Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PDPN	10630	broad.mit.edu	37	1	13942398	13942398	+	Splice_Site	SNP	A	G	G			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr1:13942398A>G	uc001avd.2	+	6	760	c.711_splice	c.e6-2	p.S237_splice	PDPN_uc001avc.2_Splice_Site_p.R235_splice|PDPN_uc009vob.2_Splice_Site_p.S119_splice|PDPN_uc009voc.2_Splice_Site_p.S119_splice|PDPN_uc001ave.2_Splice_Site_p.R117_splice|PDPN_uc001avf.2_Splice_Site_p.S119_splice	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated						cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		CTATTTTCACAGGCCCTAAAG	0.478000													3	83	---	---	---	---	0	0	0.004672	0	0
LOC441666	441666	broad.mit.edu	37	10	42832499	42832499	+	RNA	SNP	C	G	G			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr10:42832499C>G	uc010qey.1	-	3		c.1476G>C				NR_024380				Homo sapiens noncoding mRNA sequence.												0						TCTCCCCTATCAATTATGTTT	0.363000													2	8	---	---	---	---	0	0	0.004672	0	0
RPL13AP6	644511	broad.mit.edu	37	10	112696573	112696573	+	Missense_Mutation	SNP	T	C	C			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr10:112696573T>C	uc010qrh.1	-	1	441	c.419A>G	c.(418-420)CAC>CGC	p.H140R	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						GTGAGCCAGGTGCCCCAGATA	0.537000													3	14	---	---	---	---	0	0	0.009096	0	0
OTUB1	55611	broad.mit.edu	37	11	63764532	63764532	+	Missense_Mutation	SNP	T	C	C			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr11:63764532T>C	uc001nyf.1	+	6	1038	c.434T>C	c.(433-435)CTG>CCG	p.L145P	OTUB1_uc001nyg.1_Missense_Mutation_p.L188P|OTUB1_uc010rmz.1_Missense_Mutation_p.L182P|OTUB1_uc010rna.1_Missense_Mutation_p.L154P|OTUB1_uc009ypa.2_Missense_Mutation_p.L44P|OTUB1_uc009ypb.1_Missense_Mutation_p.L115P	NM_017670	NP_060140	Q96FW1	OTUB1_HUMAN	otubain 1	145	OTU.				protein K48-linked deubiquitination	cytoplasm	NEDD8-specific protease activity|omega peptidase activity|ubiquitin binding|ubiquitin-specific protease activity			breast(1)	1						TTCATGGACCTGATTGAGCAG	0.617000													3	84	---	---	---	---	0	0	0.004672	0	0
FOXM1	2305	broad.mit.edu	37	12	2983216	2983216	+	Silent	SNP	T	G	G			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr12:2983216T>G	uc001qlf.2	-	2	694	c.429A>C	c.(427-429)CCA>CCC	p.P143P	FOXM1_uc001qle.2_Silent_p.P143P|FOXM1_uc001qlg.2_Silent_p.P143P|FOXM1_uc009zea.2_Silent_p.P143P|FOXM1_uc009zeb.2_Silent_p.P143P	NM_021953	NP_068772	Q08050	FOXM1_HUMAN	forkhead box M1 isoform 2	143					cell cycle|embryo development|liver development|negative regulation of cell aging|negative regulation of stress-activated MAPK cascade|negative regulation of transcription from RNA polymerase II promoter|pattern specification process|positive regulation of cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of cell growth|regulation of cell proliferation|regulation of oxygen and reactive oxygen species metabolic process|regulation of Ras protein signal transduction|regulation of reactive oxygen species metabolic process|regulation of sequence-specific DNA binding transcription factor activity|tissue development|transcription from RNA polymerase II promoter|vasculogenesis	cytoplasm|transcription factor complex	DNA bending activity|DNA binding|DNA binding|double-stranded DNA binding|promoter binding|protein binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|transcription factor binding			central_nervous_system(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.000622)			CTGCAGGTTTTGGTCCCAAGG	0.572000													3	134	---	---	---	---	0	0	0.004672	0	0
TEAD4	7004	broad.mit.edu	37	12	3127744	3127744	+	Missense_Mutation	SNP	A	T	T			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr12:3127744A>T	uc010sej.1	+	7	791	c.514A>T	c.(514-516)ACG>TCG	p.T172S	TEAD4_uc010sek.1_Missense_Mutation_p.T129S|TEAD4_uc001qln.2_Missense_Mutation_p.T44S	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	173					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			CCAAGCCGGAACGTCCCATGA	0.582000													18	45	---	---	---	---	0	0	0.008871	0	0
WASH3P	374666	broad.mit.edu	37	15	102515344	102515344	+	Missense_Mutation	SNP	A	C	C	rs141089280	by1000genomes	TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr15:102515344A>C	uc002cdi.2	+	9	1988	c.568A>C	c.(568-570)AAG>CAG	p.K190Q	WASH3P_uc002cdl.2_Missense_Mutation_p.K190Q|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.K190Q|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						GCTGGAGAAGAAGCAGCAGAA	0.662000													2	8	---	---	---	---	0	0	0.004672	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	A	A	rs7266938	by1000genomes	TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353000													5	98	---	---	---	---	0	0	0.001984	0	0
UBASH3A	53347	broad.mit.edu	37	21	43838718	43838718	+	Missense_Mutation	SNP	G	T	T			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr21:43838718G>T	uc002zbe.2	+	7	1082	c.1046G>T	c.(1045-1047)AGG>ATG	p.R349M	UBASH3A_uc002zbf.2_Missense_Mutation_p.R311M|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Missense_Mutation_p.R311M	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	349						cytosol|nucleus				ovary(3)	3						GTGAAGCACAGGTGAGTGCTG	0.582000													13	17	---	---	---	---	4.36969e-10	1.4719e-09	0.001855	1	0
THPO	7066	broad.mit.edu	37	3	184090683	184090683	+	Missense_Mutation	SNP	G	C	C			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr3:184090683G>C	uc003fol.1	-	6	895	c.680C>G	c.(679-681)GCC>GGC	p.A227G	THPO_uc003fom.1_Missense_Mutation_p.A223G|THPO_uc003fon.2_Missense_Mutation_p.S188R|THPO_uc011bro.1_Missense_Mutation_p.S184R|THPO_uc003fop.2_Missense_Mutation_p.S184R|THPO_uc011brp.1_Intron|THPO_uc011brq.1_Intron|THPO_uc003for.1_RNA|THPO_uc003fos.1_RNA	NM_000460	NP_000451	P40225	TPO_HUMAN	thrombopoietin precursor	227					cell proliferation|platelet activation	extracellular space	cytokine activity|growth factor activity|hormone activity			ovary(1)	1	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGGAATCTTGGCTCTGAATCC	0.527000													4	50	---	---	---	---	0	0	0.009096	0	0
LOC220729	220729	broad.mit.edu	37	3	197348634	197348634	+	RNA	SNP	G	C	C			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr3:197348634G>C	uc011bug.1	-	4		c.457C>G			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						CAGCAGCACCGATGGGCCTGC	0.542000													3	31	---	---	---	---	0	0	0.004672	0	0
STK32B	55351	broad.mit.edu	37	4	5468544	5468544	+	Missense_Mutation	SNP	A	C	C			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr4:5468544A>C	uc003gih.1	+	10	1088	c.1024A>C	c.(1024-1026)AAG>CAG	p.K342Q	STK32B_uc010ida.1_Missense_Mutation_p.K295Q	NM_018401	NP_060871	Q9NY57	ST32B_HUMAN	serine/threonine kinase 32B	342							ATP binding|metal ion binding|protein serine/threonine kinase activity			breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						GGATGGCACAAAGGACAGCTG	0.502000													3	40	---	---	---	---	0	0	0.009096	0	0
FAM13A	10144	broad.mit.edu	37	4	89653166	89653166	+	Missense_Mutation	SNP	G	T	T			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr4:89653166G>T	uc003hse.1	-	22	3038	c.2830C>A	c.(2830-2832)CAT>AAT	p.H944N	FAM13A_uc011cdp.1_Missense_Mutation_p.H46N|FAM13A_uc003hsa.1_Missense_Mutation_p.H387N|FAM13A_uc003hsb.1_Missense_Mutation_p.H618N|FAM13A_uc003hsd.1_Missense_Mutation_p.H590N|FAM13A_uc003hsc.1_Missense_Mutation_p.H604N|FAM13A_uc011cdq.1_Missense_Mutation_p.H590N|FAM13A_uc003hsf.1_Missense_Mutation_p.H530N|FAM13A_uc003hsg.1_Missense_Mutation_p.H387N	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	944					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity	p.H944L(1)		ovary(1)|liver(1)	2						GAGGCAGCATGGAGATTTGAA	0.368000													4	46	---	---	---	---	0.00116845	0.00373903	0.001168	1	0
RGL2	5863	broad.mit.edu	37	6	33263171	33263171	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr6:33263171G>A	uc003odv.2	-	8	1182	c.1049C>T	c.(1048-1050)TCA>TTA	p.S350L	RGL2_uc003odu.2_5'UTR|RGL2_uc010jur.2_5'UTR|RGL2_uc003odw.2_Missense_Mutation_p.S268L|RGL2_uc011drb.1_Missense_Mutation_p.S268L	NM_004761	NP_004752	O15211	RGL2_HUMAN	ral guanine nucleotide dissociation	350	Ras-GEF.				Ras protein signal transduction|regulation of small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity			skin(3)|lung(1)|breast(1)|pancreas(1)	6						GGCATAAACTGAAGAGAAGTT	0.602000													5	6	---	---	---	---	0	0	0.001984	0	0
TG	7038	broad.mit.edu	37	8	133906022	133906022	+	Missense_Mutation	SNP	G	A	A			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr8:133906022G>A	uc003ytw.2	+	11	2890	c.2849G>A	c.(2848-2850)CGG>CAG	p.R950Q		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	950	Thyroglobulin type-1 8.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AACAGTTCTCGGTTCCCTCTG	0.572000													4	111	---	---	---	---	0	0	0.009096	0	0
TLR4	7099	broad.mit.edu	37	9	120475419	120475419	+	Missense_Mutation	SNP	T	C	C			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr9:120475419T>C	uc004bjz.2	+	3	1304	c.1013T>C	c.(1012-1014)GTT>GCT	p.V338A	TLR4_uc004bka.2_Missense_Mutation_p.V298A|TLR4_uc004bkb.2_Missense_Mutation_p.V138A	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	338	LRR 9.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TTAGAATTAGTTAACTGTAAA	0.338000													14	60	---	---	---	---	0	0	0.002450	0	0
TUBB2C	10383	broad.mit.edu	37	9	140137041	140137041	+	Missense_Mutation	SNP	C	G	G			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr9:140137041C>G	uc004cmh.1	+	4	473	c.371C>G	c.(370-372)GCT>GGT	p.A124G	TUBB2C_uc004cmg.1_5'UTR	NM_006088	NP_006079	P68371	TBB2C_HUMAN	tubulin, beta, 2	124					'de novo' posttranslational protein folding|cellular component movement|G2/M transition of mitotic cell cycle|microtubule-based movement|natural killer cell mediated cytotoxicity|protein polymerization	cytosol|microtubule	GTP binding|GTPase activity|MHC class I protein binding|structural molecule activity|unfolded protein binding			ovary(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		AGAAAGGAGGCTGAGAGCTGT	0.617000													26	46	---	---	---	---	0	0	0.003954	0	0
MR1	3140	broad.mit.edu	37	1	181003006	181003006	+	5'Flank	DEL	T	-	-			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr1:181003006delT	uc001goq.1	+						MR1_uc001gop.2_5'Flank|MR1_uc001gor.1_5'Flank|MR1_uc001gos.1_5'Flank|MR1_uc010pns.1_5'Flank	NM_001531	NP_001522	Q95460	HMR1_HUMAN	major histocompatibility complex, class						antigen processing and presentation of peptide antigen via MHC class I|immune response	endoplasmic reticulum|extracellular region|integral to membrane|MHC class I protein complex	MHC class I receptor activity			skin(1)	1						TCATTTTATCTTTTTTTTTTA	0.413													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	122114156	122114156	+	IGR	DEL	T	-	-	rs146890294		TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr10:122114156delT								SEC23IP (412911 upstream) : PPAPDC1A (102310 downstream)																							AAGTTCATTCTTTTTTTTTTT	0.303													2	4	---	---	---	---					
LPXN	9404	broad.mit.edu	37	11	58343414	58343414	+	5'Flank	DEL	T	-	-	rs34461980		TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr11:58343414delT	uc001nmw.2	-						LPXN_uc009ymp.2_5'Flank|LPXN_uc010rkj.1_Intron|LPXN_uc010rkk.1_Intron	NM_004811	NP_004802	O60711	LPXN_HUMAN	leupaxin isoform 2						cell adhesion|protein complex assembly|signal transduction	cytoplasm	zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				TTTGGTGAGCTTTTTTTTTTT	0.388													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	113492284	113492285	+	IGR	INS	-	A	A	rs34462445		TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr12:113492284_113492285insA								OAS2 (42757 upstream) : DTX1 (3377 downstream)																							CTCAATGGACCAAAAAAAAAAA	0.381													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	75340955	75340955	+	IGR	DEL	T	-	-	rs35863744		TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr14:75340955delT								PROX2 (10418 upstream) : DLST (7639 downstream)																							ATCATACAAGttttttttttt	0.199													2	4	---	---	---	---					
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	G	G	rs2981599		TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr16:3119304_3119305insG	uc002cto.2	+	6	864_865	c.653_654insG	c.(652-654)GACfs	p.D218fs	IL32_uc002ctk.2_Frame_Shift_Ins_p.D115fs|IL32_uc010uwp.1_Frame_Shift_Ins_p.D152fs|IL32_uc010btb.2_Frame_Shift_Ins_p.D162fs|IL32_uc002ctl.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctm.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctn.2_Frame_Shift_Ins_p.D172fs|IL32_uc002cts.3_Frame_Shift_Ins_p.D172fs|IL32_uc002ctp.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctq.2_Frame_Shift_Ins_p.D218fs|IL32_uc002ctr.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctt.2_Frame_Shift_Ins_p.D172fs|IL32_uc010uwr.1_Frame_Shift_Ins_p.D132fs|IL32_uc002ctu.2_Frame_Shift_Ins_p.D163fs	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						CCACGGGGGGACAAGGAGGAGC	0.574													18	242	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	32471773	32471774	+	IGR	INS	-	A	A	rs149995933	by1000genomes	TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr16:32471773_32471774insA								HERC2P4 (307899 upstream) : TP53TG3B (213067 downstream)																							TATCACTTGCTAAAAAAAAATC	0.252													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	60308706	60308706	+	IGR	DEL	A	-	-			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr17:60308706delA								MED13 (166063 upstream) : TBC1D3P2 (33363 downstream)																							TGGCTTATTTAAAAAAAAAAA	0.323													2	4	---	---	---	---					
DOK6	220164	broad.mit.edu	37	18	67231729	67231729	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr18:67231729delA	uc002lkl.2	+	2	263	c.73delA	c.(73-75)AGAfs	p.R25fs		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	25	PH.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				TCAGATTTTCAGACGATGCTG	0.328													18	23	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	21817582	21817586	+	IGR	DEL	GCAAA	-	-	rs55707945		TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr19:21817582_21817586delGCAAA								ZNF429 (78514 upstream) : ZNF100 (89258 downstream)																							tcttgcaactgcaaaaaaaaaaaaa	0.068													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	110268303	110268304	+	IGR	INS	-	AA	AA			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr4:110268303_110268304insAA								COL25A1 (44504 upstream) : SEC24B (86667 downstream)																							AGACCTTTTGGAGGGCCTCTAC	0.475													8	77	---	---	---	---					
LOC644936	644936	broad.mit.edu	37	5	79598394	79598395	+	5'Flank	DEL	AA	-	-			TCGA-DE-A2OL-01A-11D-A18F-08	TCGA-DE-A2OL-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	fc812906-d3b6-4210-a842-96f095280cbf	385b3242-e4b2-4574-9289-48b8826ae644	g.chr5:79598394_79598395delAA	uc010jai.2	-							NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						cttttaaaggaaaaaaaaaaaa	0.203													3	5	---	---	---	---					
