Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1orf216	127703	broad.mit.edu	37	1	36181503	36181503	+	Silent	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr1:36181503G>A	uc001bzh.1	-	2	908	c.420C>T	c.(418-420)CCC>CCT	p.P140P		NM_152374	NP_689587	Q8TAB5	CA216_HUMAN	hypothetical protein LOC127703	140										skin(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				GAAGGGGATCGGGAGGGCCAG	0.617000											OREG0013357	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	198	---	---	---	---	0	0	0.001984	0	0
SNX7	51375	broad.mit.edu	37	1	99161131	99161131	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr1:99161131G>T	uc010ouc.1	+	5	749	c.697G>T	c.(697-699)GTC>TTC	p.V233F	SNX7_uc001dsa.2_Missense_Mutation_p.V169F|SNX7_uc010oud.1_Missense_Mutation_p.V178F	NM_015976	NP_057060	Q9UNH6	SNX7_HUMAN	sorting nexin 7 isoform a	169					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		all_epithelial(167;7.64e-07)|all_lung(203;0.0006)|Lung NSC(277;0.00137)		Epithelial(280;0.0521)|all cancers(265;0.0687)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.207)|Colorectal(170;0.234)		GGGGCAAACCGTCAGAGCTGT	0.403000													33	75	---	---	---	---	4.3181e-19	4.84151e-19	0.013726	1	0
ARRB1	408	broad.mit.edu	37	11	74979939	74979939	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr11:74979939G>A	uc001owe.1	-	14	1309	c.1087C>T	c.(1087-1089)CGG>TGG	p.R363W	ARRB1_uc001owf.1_Missense_Mutation_p.R355W	NM_004041	NP_004032	P49407	ARRB1_HUMAN	arrestin beta 1 isoform A	363	Interaction with TRAF6.				G-protein coupled receptor internalization|histone H4 acetylation|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|positive regulation of histone acetylation|positive regulation of Rho protein signal transduction|positive regulation of transcription from RNA polymerase II promoter|post-Golgi vesicle-mediated transport|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|signal transduction|stress fiber assembly|transcription from RNA polymerase II promoter	chromatin|coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane fraction|nucleus|plasma membrane|pseudopodium|soluble fraction	angiotensin receptor binding|enzyme inhibitor activity|GTPase activator activity|insulin-like growth factor receptor binding|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding			breast(2)	2						TCACCTTCCCGATGCGGGGGT	0.627000													49	108	---	---	---	---	0	0	0.014410	0	0
IRAK4	51135	broad.mit.edu	37	12	44172022	44172022	+	Silent	SNP	C	T	T			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr12:44172022C>T	uc001rnu.3	+	9	988	c.858C>T	c.(856-858)CAC>CAT	p.H286H	IRAK4_uc001rnt.3_Silent_p.H286H|IRAK4_uc001rnx.3_Silent_p.H162H|IRAK4_uc001rny.3_Silent_p.H162H|IRAK4_uc010sky.1_Silent_p.H162H|IRAK4_uc001rnv.3_Silent_p.H162H|IRAK4_uc001rnw.3_Silent_p.H162H	NM_001114182	NP_001107654	Q9NWZ3	IRAK4_HUMAN	interleukin-1 receptor-associated kinase 4	286	Protein kinase.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0	all_cancers(12;0.00149)	Lung NSC(34;0.0804)|all_lung(34;0.181)		GBM - Glioblastoma multiforme(48;0.04)		TTTCTTGGCACATGAGATGCA	0.303000													25	73	---	---	---	---	0	0	0.008361	0	0
GCN1L1	10985	broad.mit.edu	37	12	120589045	120589045	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr12:120589045C>G	uc001txo.2	-	34	4226	c.4213G>C	c.(4213-4215)GTG>CTG	p.V1405L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	1405					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AGGCCCTTCACCAGGCCCGCC	0.602000													5	98	---	---	---	---	0	0	0.000602	0	0
ZC3H13	23091	broad.mit.edu	37	13	46563027	46563027	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr13:46563027T>C	uc010tfw.1	-	8	1156	c.1150A>G	c.(1150-1152)AGA>GGA	p.R384G	ZC3H13_uc001vas.1_Missense_Mutation_p.R384G|ZC3H13_uc001vat.1_Missense_Mutation_p.R384G	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	384	Arg/Ser-rich.						nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		CTCTGCTTTCTCTGGGGAGAC	0.483000													5	56	---	---	---	---	0	0	0.000602	0	0
ATL1	51062	broad.mit.edu	37	14	51054695	51054695	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr14:51054695G>A	uc001wyf.3	+	2	422	c.181G>A	c.(181-183)GCT>ACT	p.A61T	ATL1_uc001wyd.3_Missense_Mutation_p.A61T|ATL1_uc001wye.3_Missense_Mutation_p.A61T	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	61	Cytoplasmic.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						TCTCTCGGAGGCTGTCAGAGA	0.433000													6	278	---	---	---	---	0	0	0.003080	0	0
SYNE2	23224	broad.mit.edu	37	14	64678781	64678781	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr14:64678781G>C	uc001xgm.2	+	104	19056	c.18826G>C	c.(18826-18828)GAG>CAG	p.E6276Q	SYNE2_uc001xgl.2_Missense_Mutation_p.E6276Q|SYNE2_uc010apy.2_Missense_Mutation_p.E2661Q|SYNE2_uc001xgn.2_Missense_Mutation_p.E1238Q|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.E246Q|SYNE2_uc001xgq.2_Missense_Mutation_p.E641Q|SYNE2_uc001xgr.2_Missense_Mutation_p.E59Q|SYNE2_uc010tsi.1_5'Flank|SYNE2_uc001xgs.2_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6276	Spectrin 8.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GCACTTCTCAGAGAGTGACGC	0.542000													4	197	---	---	---	---	0	0	0.009096	0	0
GALNTL1	57452	broad.mit.edu	37	14	69795278	69795278	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr14:69795278G>A	uc010aqu.1	+	6	773	c.680G>A	c.(679-681)CGG>CAG	p.R227Q	GALNTL1_uc001xla.1_Missense_Mutation_p.R227Q|GALNTL1_uc001xlb.1_Missense_Mutation_p.R227Q	NM_020692	NP_065743	Q8N428	GLTL1_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	227	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(1)|central_nervous_system(1)	2				all cancers(60;0.00793)|BRCA - Breast invasive adenocarcinoma(234;0.0174)|OV - Ovarian serous cystadenocarcinoma(108;0.0656)		ATGCTGCAGCGGGTGAAGGAG	0.622000													24	62	---	---	---	---	0	0	0.009535	0	0
Unknown	0	broad.mit.edu	37	15	28929385	28929385	+	RNA	SNP	T	C	C	rs692172	by1000genomes	TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr15:28929385T>C	uc010azc.2	+	14		c.2090T>C								Homo sapiens I.M.A.G.E. clone 321824, mRNA sequence.																		CACGCTGCGGTGGTCTTGCAT	0.453000													4	52	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	15	102292819	102292819	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr15:102292819C>T	uc010usj.1	+	4	466	c.407C>T	c.(406-408)ACG>ATG	p.T136M	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank|uc002byr.2_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		CGCGTGGGAACGAGAAGACAC	0.592000													4	16	---	---	---	---	0	0	0.009096	0	0
MYH13	8735	broad.mit.edu	37	17	10209906	10209906	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr17:10209906G>A	uc002gmk.1	-	37	5426	c.5336C>T	c.(5335-5337)ACC>ATC	p.T1779I		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1779	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GTGGGCGCTGGTGTCCTGTTC	0.592000													26	129	---	---	---	---	0	0	0.005443	0	0
CD300LF	146722	broad.mit.edu	37	17	72692351	72692351	+	Missense_Mutation	SNP	C	T	T	rs149416788		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr17:72692351C>T	uc002jlg.2	-	5	668	c.565G>A	c.(565-567)GGG>AGG	p.G189R	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|CD300LF_uc002jlf.2_Missense_Mutation_p.G192R|CD300LF_uc010dfw.2_Intron|CD300LF_uc002jlh.2_Missense_Mutation_p.R204Q|CD300LF_uc002jli.2_Missense_Mutation_p.R154Q|CD300LF_uc010wra.1_Missense_Mutation_p.G204R|CD300LF_uc002jlj.1_Intron	NM_139018	NP_620587	Q8TDQ1	CLM1_HUMAN	NK inhibitory receptor precursor	189	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			upper_aerodigestive_tract(1)	1						GGGGACATCCCGGCTGCTAAA	0.488000													5	211	---	---	---	---	0	0	0.000602	0	0
FADS6	283985	broad.mit.edu	37	17	72874555	72874555	+	Missense_Mutation	SNP	C	T	T	rs145096183	by1000genomes	TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr17:72874555C>T	uc002jmd.1	-	6	970	c.958G>A	c.(958-960)GAG>AAG	p.E320K	FADS6_uc010wrn.1_Missense_Mutation_p.E174K	NM_178128	NP_835229	Q8N9I5	FADS6_HUMAN	fatty acid desaturase domain family, member 6	326					fatty acid biosynthetic process	integral to membrane	oxidoreductase activity				0	all_lung(278;0.172)|Lung NSC(278;0.207)					TATGAGTCCTCGTTGTACGGT	0.587000													20	65	---	---	---	---	0	0	0.007413	0	0
CEP192	55125	broad.mit.edu	37	18	13068880	13068880	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr18:13068880G>A	uc010xac.1	+	25	4932	c.4852G>A	c.(4852-4854)GCA>ACA	p.A1618T	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.A1143T|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_Missense_Mutation_p.A40T|CEP192_uc002krw.2_5'Flank	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1618										ovary(4)|pancreas(1)	5						AGAATTCTCGGCAAAAGTTGA	0.438000													4	156	---	---	---	---	0	0	0.001168	0	0
NPAS2	4862	broad.mit.edu	37	2	101592002	101592002	+	Silent	SNP	C	T	T	rs140730823	byFrequency	TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr2:101592002C>T	uc002tap.1	+	14	1651	c.1365C>T	c.(1363-1365)CCC>CCT	p.P455P	NPAS2_uc010yvt.1_Silent_p.P520P|NPAS2_uc010fit.1_Silent_p.P33P	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	455					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						TACCTGTCCCCGGGCTCAGCC	0.612000													6	256	---	---	---	---	0	0	0.001168	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47611021	47611021	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr20:47611021C>T	uc002xtx.3	+	22	3159	c.3007C>T	c.(3007-3009)CAG>TAG	p.Q1003*	ARFGEF2_uc010zyf.1_Nonsense_Mutation_p.Q296*	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1003					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			GGAGCTCGCTCAGCTGATAGG	0.493000													20	66	---	---	---	---	0	0	0.010504	0	0
SI	6476	broad.mit.edu	37	3	164741469	164741469	+	Silent	SNP	T	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr3:164741469T>A	uc003fei.2	-	26	3050	c.2988A>T	c.(2986-2988)ACA>ACT	p.T996T		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	996	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGAGGTCAGCTGTTATACCCA	0.403000										HNSCC(35;0.089)			29	75	---	---	---	---	0	0	0.008361	0	0
CLCN3	1182	broad.mit.edu	37	4	170628369	170628369	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr4:170628369C>T	uc003isi.2	+	11	2610	c.2101C>T	c.(2101-2103)CAG>TAG	p.Q701*	CLCN3_uc003ish.2_Nonsense_Mutation_p.Q701*|CLCN3_uc011cjz.1_Nonsense_Mutation_p.Q684*|CLCN3_uc011cka.1_Nonsense_Mutation_p.Q674*|CLCN3_uc003isj.1_Nonsense_Mutation_p.Q674*	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	701	CBS 1.|Cytoplasmic (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		AAAAGAATCTCAGAGATTAGT	0.358000													47	154	---	---	---	---	0	0	0.014410	0	0
HCN1	348980	broad.mit.edu	37	5	45262699	45262699	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr5:45262699G>A	uc003jok.2	-	8	2022	c.1997C>T	c.(1996-1998)CCG>CTG	p.P666L		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	666	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TGTGTACACCGGTGGAGATTG	0.577000													4	103	---	---	---	---	0	0	0.001168	0	0
KIF4B	285643	broad.mit.edu	37	5	154395057	154395057	+	Silent	SNP	C	T	T			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr5:154395057C>T	uc010jih.1	+	1	1798	c.1638C>T	c.(1636-1638)AAC>AAT	p.N546N		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	546	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGACTCAGAACGACAACCAAC	0.418000													22	50	---	---	---	---	0	0	0.010504	0	0
FAM50B	26240	broad.mit.edu	37	6	3850220	3850220	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr6:3850220G>A	uc003mvu.2	+	2	287	c.175G>A	c.(175-177)GAG>AAG	p.E59K		NM_012135	NP_036267	Q9Y247	FA50B_HUMAN	family with sequence similarity 50, member B	59						nucleus				pancreas(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				CGTGGAGGCCGAGCTGAAGTC	0.662000													15	30	---	---	---	---	0	0	0.003163	0	0
OPLAH	26873	broad.mit.edu	37	8	145113008	145113008	+	Silent	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr8:145113008G>A	uc003zar.3	-	8	1075	c.993C>T	c.(991-993)CAC>CAT	p.H331H	OPLAH_uc003zas.1_5'Flank|OPLAH_uc003zat.1_Silent_p.H109H	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	331							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	CCTCGAAGACGTGCTCGAATT	0.662000													4	131	---	---	---	---	0	0	0.009096	0	0
C9orf86	55684	broad.mit.edu	37	9	139733836	139733836	+	Silent	SNP	G	A	A			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr9:139733836G>A	uc004cji.1	+	12	1924	c.1656G>A	c.(1654-1656)TCG>TCA	p.S552S	C9orf86_uc004cjj.1_Silent_p.S553S|C9orf86_uc004cjk.1_RNA|C9orf86_uc010nbr.1_Intron|C9orf86_uc004cjl.1_RNA|C9orf86_uc010nbs.1_Silent_p.S437S|C9orf86_uc004cjn.1_Silent_p.S346S	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	552					small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		AGGCCTCCTCGTCGGAGAGTG	0.642000													6	32	---	---	---	---	0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	1	37568497	37568498	+	IGR	INS	-	AA	AA			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr1:37568497_37568498insAA								GRIK3 (68653 upstream) : ZC3H12A (371621 downstream)																							ggaagaggagggaggaggagga	0.000													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	44362841	44362842	+	IGR	INS	-	GGGCAG	GGGCAG	rs148321434	by1000genomes	TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr10:44362841_44362842insGGGCAG								HNRNPA3P1 (76976 upstream) : CXCL12 (502765 downstream)																							ggcgggggcaagggcaggggca	0.163													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	134206019	134206020	+	IGR	INS	-	G	G	rs142843997		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr10:134206019_134206020insG								LRRC27 (11009 upstream) : PWWP2B (4682 downstream)																							atgatggtgatgtgataatggt	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	74711567	74711568	+	IGR	INS	-	TCCT	TCCT			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr12:74711567_74711568insTCCT								None (None upstream) : ATXN7L3B (219983 downstream)																							cttttccttcctccttccttcc	0.134													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	130652163	130652164	+	IGR	INS	-	GA	GA			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr12:130652163_130652164insGA								FZD10 (1879 upstream) : PIWIL1 (170450 downstream)																							aaggaaagaaggaaagaaagaa	0.005													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	31652513	31652520	+	IGR	DEL	AAGAAAGA	-	-	rs7986217		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr13:31652513_31652520delAAGAAAGA								C13orf26 (103362 upstream) : HSPH1 (58245 downstream)																							ggaaggaaggaagaaagaaagaaagaaa	0.192													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	3010024	3010035	+	IGR	DEL	ACCTACCTACCT	-	-	rs111260640		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr16:3010024_3010035delACCTACCTACCT								FLYWCH1 (8816 upstream) : KREMEN2 (4182 downstream)																							caaccaaccaacctacctacctacctacctac	0.009													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	39130721	39130724	+	IGR	DEL	TCTT	-	-	rs12941907	by1000genomes	TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr17:39130721_39130724delTCTT								KRT39 (7577 upstream) : KRT40 (3244 downstream)																							tttctttctctctttctttctttc	0.000													6	4	---	---	---	---					
GRIN2C	2905	broad.mit.edu	37	17	72858493	72858494	+	5'Flank	INS	-	C	C	rs150874217	by1000genomes	TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr17:72858493_72858494insC	uc002jlt.1	-						GRIN2C_uc010wrh.1_5'Flank|GRIN2C_uc002jlu.1_5'Flank|GRIN2C_uc002jlv.1_5'Flank	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C						glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	GCCCCATCAAGCCCCAATGAGG	0.658											OREG0024719	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	47265476	47265479	+	IGR	DEL	GTGT	-	-			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr19:47265476_47265479delGTGT								FKRP (3644 upstream) : SLC1A5 (12663 downstream)																							ctaaaaatacgtgtgtgtgtgtgt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	58479808	58479808	+	IGR	DEL	A	-	-			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr2:58479808delA								FANCL (11293 upstream) : None (None downstream)																							TTTGtaaattaaaaaaaaaaa	0.234													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	91764926	91764935	+	IGR	DEL	TGTGTGTGTA	-	-	rs4844533		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr2:91764926_91764935delTGTGTGTGTA								None (None upstream) : LOC654342 (40257 downstream)																							tgtgtgtgtgtgtgtgtgtatatatataca	0.014													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	9100705	9100705	+	IGR	DEL	C	-	-	rs35489941		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr6:9100705delC								HULC (446628 upstream) : None (None downstream)																							cttcctccctctccttcctct	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	32210288	32210291	+	IGR	DEL	TTCC	-	-	rs41286514		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr6:32210288_32210291delTTCC								NOTCH4 (18444 upstream) : C6orf10 (46012 downstream)																							cattccttctttccttccttcctt	0.044													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	62665042	62665043	+	IGR	DEL	AC	-	-	rs79271344		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr7:62665042_62665043delAC								None (None upstream) : LOC643955 (86629 downstream)																							TTAGGATTATacacacacacac	0.228													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	148888416	148888419	+	IGR	DEL	CTCA	-	-	rs147356472		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr7:148888416_148888419delCTCA								ZNF398 (8300 upstream) : ZNF282 (4158 downstream)																							gagatggagtctcactctgtcgcc	0.172													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	91131649	91131650	+	IGR	INS	-	TTCCTTCC	TTCCTTCC	rs62580715		TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr9:91131649_91131650insTTCCTTCC								SPIN1 (38029 upstream) : NXNL2 (18366 downstream)																							accaCATTTTGttccttccttc	0.010													2	4	---	---	---	---					
C9orf86	55684	broad.mit.edu	37	9	139734633	139734635	+	In_Frame_Del	DEL	AGA	-	-			TCGA-DJ-A13R-01A-11D-A10S-08	TCGA-DJ-A13R-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f039593-91d1-43cb-a06b-41e92f7e8d20	97808f8d-720c-41c2-ba0d-59922e48a182	g.chr9:139734633_139734635delAGA	uc004cji.1	+	14	2226_2228	c.1958_1960delAGA	c.(1957-1962)GAGAAG>GAG	p.K660del	C9orf86_uc004cjj.1_In_Frame_Del_p.K661del|C9orf86_uc004cjk.1_RNA|C9orf86_uc010nbr.1_Intron|C9orf86_uc004cjl.1_RNA|C9orf86_uc010nbs.1_In_Frame_Del_p.K545del|C9orf86_uc004cjn.1_In_Frame_Del_p.K454del	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	660	Interaction with CDKN2A.|Lys-rich.				small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		CCCTCTaaggagaagaagaagaa	0.532													8	84	---	---	---	---					
