Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
UBE4B	10277	broad.mit.edu	37	1	10209302	10209302	+	Silent	SNP	T	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr1:10209302T>C	uc001aqs.3	+	20	3365	c.2652T>C	c.(2650-2652)TAT>TAC	p.Y884Y	UBE4B_uc001aqr.3_Silent_p.Y755Y|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Silent_p.Y339Y|UBE4B_uc001aqt.1_Silent_p.Y224Y	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	884					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		CTGAGTTTTATGTAGAAGATG	0.274													5	53	---	---	---	---	0	0	0.014758	0	0
MACF1	23499	broad.mit.edu	37	1	39926406	39926406	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr1:39926406G>A	uc010oiu.1	+	57	16923	c.16792G>A	c.(16792-16794)GAT>AAT	p.D5598N	MACF1_uc010ois.1_Missense_Mutation_p.D5096N|MACF1_uc001cde.1_5'Flank|MACF1_uc001cdf.1_5'Flank	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7054	1 (Potential).|EF-hand 1.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CCGGCGCATTGATAAGGACCA	0.428													10	150	---	---	---	---	0	0	0.093190	0	0
NASP	4678	broad.mit.edu	37	1	46080813	46080813	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr1:46080813C>T	uc001coi.1	+	10	1897	c.1795C>T	c.(1795-1797)CAG>TAG	p.Q599*	NASP_uc001coh.1_Nonsense_Mutation_p.Q601*|NASP_uc001coj.1_Nonsense_Mutation_p.Q260*|NASP_uc010olr.1_Nonsense_Mutation_p.Q535*|NASP_uc001col.1_Nonsense_Mutation_p.Q107*	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	599	TPR 3.|Potential.|Glu-rich (acidic).				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					GTACAACTCTCAGTATGATGA	0.512													4	85	---	---	---	---	0	0	0.014758	0	0
PTPN22	26191	broad.mit.edu	37	1	114380398	114380398	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr1:114380398G>A	uc001eds.2	-	13	1754	c.1624C>T	c.(1624-1626)CCA>TCA	p.P542S	PTPN22_uc009wgq.2_Missense_Mutation_p.P487S|PTPN22_uc010owo.1_Missense_Mutation_p.P298S|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.P542S|PTPN22_uc009wgs.2_Missense_Mutation_p.P415S|PTPN22_uc001edu.2_Missense_Mutation_p.P542S	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	542					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACCACTTGGAGGCCATGAT	0.393													5	66	---	---	---	---	0	0	0.021553	0	0
INSRR	3645	broad.mit.edu	37	1	156821796	156821796	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr1:156821796G>A	uc010pht.1	-	3	1079	c.825C>T	c.(823-825)GTC>GTT	p.V275V	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Silent_p.V275V	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	275					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCTCAGCTGTGACACAGCGCC	0.657													5	35	---	---	---	---	0	0	0.021553	0	0
ANGPTL1	9068	broad.mit.edu	37	1	178820385	178820385	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr1:178820385C>T	uc001gma.2	-	6	1831	c.1355G>A	c.(1354-1356)GGA>GAA	p.G452E	RALGPS2_uc001gly.1_Intron|RALGPS2_uc001glz.2_Intron|RALGPS2_uc010pnb.1_Intron|ANGPTL1_uc001gmb.2_Missense_Mutation_p.G452E	NM_004673	NP_004664	O95841	ANGL1_HUMAN	angiopoietin-like 1 precursor	452	Fibrinogen C-terminal.					extracellular space	receptor binding				0						GTACCATACTCCATTTAGGTT	0.438													6	76	---	---	---	---	0	0	0.029380	0	0
ACTA1	58	broad.mit.edu	37	1	229567331	229567331	+	Missense_Mutation	SNP	G	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr1:229567331G>C	uc001htm.2	-	7	1154	c.1049C>G	c.(1048-1050)TCG>TGG	p.S350W		NM_001100	NP_001091	P68133	ACTS_HUMAN	actin, alpha 1, skeletal muscle	350			S -> L (in NEM3).		muscle filament sliding|skeletal muscle fiber development|skeletal muscle thin filament assembly	actin filament|cytosol|stress fiber|striated muscle thin filament	ADP binding|ATP binding|myosin binding|structural constituent of cytoskeleton				0	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.167)			Dornase Alfa(DB00003)	GGTGGACAGCGAGGCCAGGAT	0.627													11	194	---	---	---	---	0	0	0.105934	0	0
KLF6	1316	broad.mit.edu	37	10	3824138	3824138	+	Missense_Mutation	SNP	T	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr10:3824138T>C	uc001iha.2	-	2	638	c.371A>G	c.(370-372)AAG>AGG	p.K124R	KLF6_uc010qaj.1_Missense_Mutation_p.K124R|KLF6_uc010qak.1_RNA|KLF6_uc010qal.1_Missense_Mutation_p.K124R|KLF6_uc001ihb.2_Missense_Mutation_p.K124R	NM_001300	NP_001291	Q99612	KLF6_HUMAN	Kruppel-like factor 6 isoform A	124					B cell differentiation	nucleus	zinc ion binding	p.K124R(1)		central_nervous_system(3)|lung(1)	4				Colorectal(1;0.238)		GGAGGTAAACTTGGCCGTGGG	0.532											OREG0019980	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	152	---	---	---	---	0	0	0.076483	0	0
GPR158	57512	broad.mit.edu	37	10	25464395	25464395	+	Missense_Mutation	SNP	C	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr10:25464395C>A	uc001isj.2	+	1	106	c.46C>A	c.(46-48)CAG>AAG	p.Q16K	LOC100128811_uc010qde.1_Intron	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	16						integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						CCTGCTTGCTCAGCTGGGATT	0.637													6	92	---	---	---	---	0.000274275	0.000287589	0.047766	1	0
CCNJ	54619	broad.mit.edu	37	10	97817702	97817702	+	Nonsense_Mutation	SNP	C	T	T	rs149060787		TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr10:97817702C>T	uc001klm.2	+	6	1182	c.823C>T	c.(823-825)CAG>TAG	p.Q275*	uc001klg.1_Intron|uc001klj.1_Intron|uc009xvb.1_Intron|CCNJ_uc010qoq.1_Nonsense_Mutation_p.Q286*|CCNJ_uc001kln.2_Nonsense_Mutation_p.Q274*	NM_019084	NP_061957	Q5T5M9	CCNJ_HUMAN	cyclin J isoform 2	275						nucleus				ovary(1)	1				Epithelial(162;6.1e-08)|all cancers(201;2.32e-06)		AGTTCACTTTCAGCAACCTCA	0.502													14	159	---	---	---	---	0	0	0.024245	0	0
KCNIP2	30819	broad.mit.edu	37	10	103587154	103587154	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr10:103587154C>T	uc001kub.2	-	10	1121	c.769G>A	c.(769-771)GAG>AAG	p.E257K	KCNIP2_uc010qqg.1_Missense_Mutation_p.E201K|KCNIP2_uc001ktx.2_RNA|KCNIP2_uc001kty.2_Missense_Mutation_p.E155K|KCNIP2_uc001ktz.2_Missense_Mutation_p.E212K|KCNIP2_uc009xwu.2_Missense_Mutation_p.E206K|KCNIP2_uc009xwv.2_Missense_Mutation_p.E203K|KCNIP2_uc001kuc.2_Missense_Mutation_p.E272K|KCNIP2_uc001kue.2_Missense_Mutation_p.E239K|KCNIP2_uc001kud.2_Missense_Mutation_p.E214K|KCNIP2_uc001kuf.2_Missense_Mutation_p.E207K|KCNIP2_uc001kua.2_Missense_Mutation_p.E188K|KCNIP2_uc009xww.2_RNA	NM_173191	NP_775283	Q9NS61	KCIP2_HUMAN	Kv channel interacting protein 2 isoform 2	257	Interaction with KCND2 (By similarity).|EF-hand 4.				clustering of voltage-gated potassium channels|detection of calcium ion|muscle contraction|regulation of heart contraction|signal transduction|synaptic transmission	cytoplasm|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|calcium ion binding|ER retention sequence binding|identical protein binding|protein N-terminus binding				0		Colorectal(252;0.122)		Epithelial(162;4.93e-09)|all cancers(201;2.63e-07)		ATGATGTTCTCATCCTGTGGC	0.527													10	176	---	---	---	---	0	0	0.080935	0	0
Unknown	0	broad.mit.edu	37	10	134647628	134647628	+	Splice_Site	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr10:134647628C>G	uc010qux.1	-	41	6045	c.6045_splice	c.e41-1	p.R2015_splice		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		TGTCTGCACTCTGAAAGTCAG	0.502													9	68	---	---	---	---	0	0	0.058154	0	0
MUC6	4588	broad.mit.edu	37	11	1026001	1026001	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr11:1026001G>A	uc001lsw.2	-	21	2738	c.2687C>T	c.(2686-2688)ACG>ATG	p.T896M		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	896	VWFD 3.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GATGGTTACCGTGGCCAGGAT	0.677													2	2	---	---	---	---	0	0	0.004672	0	0
NLRP14	338323	broad.mit.edu	37	11	7064628	7064628	+	Silent	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr11:7064628C>G	uc001mfb.1	+	4	1694	c.1371C>G	c.(1369-1371)GTC>GTG	p.V457V		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	457	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		AATCTGATGTCTCTAGTTTTA	0.408													4	84	---	---	---	---	0	0	0.021553	0	0
RAG1	5896	broad.mit.edu	37	11	36597776	36597776	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr11:36597776C>T	uc001mwu.3	+	2	3046	c.2922C>T	c.(2920-2922)TTC>TTT	p.F974F	RAG1_uc001mwt.2_Intron	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	974					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				TTAGGCGCTTCCGGAAAATGA	0.468									Familial_Hemophagocytic_Lymphohistiocytosis				8	86	---	---	---	---	0	0	0.047766	0	0
PACSIN3	29763	broad.mit.edu	37	11	47200728	47200728	+	Missense_Mutation	SNP	C	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr11:47200728C>A	uc001ndw.2	-	8	1220	c.882G>T	c.(880-882)ATG>ATT	p.M294I	ARFGAP2_uc001ndt.2_5'Flank|ARFGAP2_uc010rhb.1_5'Flank|ARFGAP2_uc001ndu.2_5'Flank|ARFGAP2_uc010rhc.1_5'Flank|ARFGAP2_uc010rhd.1_5'Flank|ARFGAP2_uc001ndv.1_5'Flank|PACSIN3_uc001ndx.2_Missense_Mutation_p.M294I|PACSIN3_uc001ndy.2_Missense_Mutation_p.M294I|PACSIN3_uc001ndz.2_RNA|PACSIN3_uc001nea.2_RNA	NM_016223	NP_057307	Q9UKS6	PACN3_HUMAN	protein kinase C and casein kinase substrate in	294					endocytosis|negative regulation of endocytosis|positive regulation of membrane protein ectodomain proteolysis	cytoplasm|plasma membrane	cytoskeletal protein binding				0						GTGGCCAGTTCATGGCCATGC	0.627													26	265	---	---	---	---	2.68265e-12	2.86858e-12	0.054565	1	0
CNIH2	254263	broad.mit.edu	37	11	66050518	66050518	+	Missense_Mutation	SNP	G	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr11:66050518G>C	uc001ohi.1	+	4	443	c.211G>C	c.(211-213)GAA>CAA	p.E71Q	CNIH2_uc001ohh.2_Missense_Mutation_p.E71Q|CNIH2_uc009yrb.1_RNA	NM_182553	NP_872359	Q6PI25	CNIH2_HUMAN	cornichon homolog 2	71	Lumenal (Potential).				intracellular signal transduction|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic shaft|dendritic spine|endoplasmic reticulum membrane|postsynaptic density|postsynaptic membrane	protein binding				0						GGTGGTCCCAGAATACTCCAT	0.597											OREG0021100	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	157	---	---	---	---	0	0	0.020292	0	0
ODZ4	26011	broad.mit.edu	37	11	78437190	78437190	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr11:78437190C>T	uc001ozl.3	-	23	3947	c.3484G>A	c.(3484-3486)GAA>AAA	p.E1162K		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1162	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GCGTCAATTTCATAGCCCTGC	0.443													26	234	---	---	---	---	0	0	0.050027	0	0
DDX25	29118	broad.mit.edu	37	11	125780286	125780286	+	Silent	SNP	T	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr11:125780286T>C	uc001qcz.3	+	7	676	c.535T>C	c.(535-537)TTG>CTG	p.L179L	DDX25_uc010sbk.1_Silent_p.L179L	NM_013264	NP_037396	Q9UHL0	DDX25_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	179	Helicase ATP-binding.				mRNA export from nucleus|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|nucleus	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0203)|Lung NSC(97;0.0203)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.14e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.046)		TACTTATGAATTGGCTCTGCA	0.443													10	103	---	---	---	---	0	0	0.080935	0	0
DDX25	29118	broad.mit.edu	37	11	125780318	125780318	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr11:125780318G>A	uc001qcz.3	+	7	708	c.567G>A	c.(565-567)CAG>CAA	p.Q189Q	DDX25_uc010sbk.1_Silent_p.Q189Q	NM_013264	NP_037396	Q9UHL0	DDX25_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	189	Helicase ATP-binding.				mRNA export from nucleus|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|nucleus	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0203)|Lung NSC(97;0.0203)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.14e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.046)		TGGTTGAGCAGATGGGAAAAT	0.393													10	118	---	---	---	---	0	0	0.105934	0	0
CSDA	8531	broad.mit.edu	37	12	10862690	10862690	+	Silent	SNP	T	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr12:10862690T>C	uc001qyt.2	-	6	840	c.597A>G	c.(595-597)GAA>GAG	p.E199E	CSDA_uc001qyu.2_Intron	NM_003651	NP_003642	P16989	DBPA_HUMAN	cold shock domain protein A isoform a	199					negative regulation of transcription from RNA polymerase II promoter|response to cold	cytoplasm|nucleus	double-stranded DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|lung(1)|large_intestine(1)	4	Glioma(1;0.155)					TGCCGCTCCCTTCCTCCTCCT	0.537													2	20	---	---	---	---	0	0	0.004672	0	0
BCL2L14	79370	broad.mit.edu	37	12	12240312	12240312	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr12:12240312C>G	uc001rac.2	+	3	800	c.599C>G	c.(598-600)TCT>TGT	p.S200C	ETV6_uc001raa.1_Intron|BCL2L14_uc001raf.1_RNA|BCL2L14_uc001rad.2_Missense_Mutation_p.S200C|BCL2L14_uc001rae.2_Missense_Mutation_p.S200C	NM_138723	NP_620049	Q9BZR8	B2L14_HUMAN	BCL2-like 14 isoform 1	200					apoptosis|regulation of apoptosis	cytosol|endomembrane system|intracellular organelle|membrane	protein binding			skin(1)	1		Prostate(47;0.0872)		BRCA - Breast invasive adenocarcinoma(232;0.154)		GCTTCAAGTTCTAAGAAAGGT	0.532													5	57	---	---	---	---	0	0	0.029380	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906627	13906627	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr12:13906627C>T	uc001rbt.2	-	3	813	c.634G>A	c.(634-636)GGA>AGA	p.G212R		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	212	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTAGAATCTCCATCGTCCAGG	0.473													6	78	---	---	---	---	0	0	0.029380	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43858536	43858536	+	Splice_Site	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr12:43858536C>T	uc010skx.1	-	10	1368	c.1368_splice	c.e10-1	p.D456_splice		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with							proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GTAACCAGTACTGTAACAGTG	0.343													4	20	---	---	---	---	0	0	0.009096	0	0
ARID2	196528	broad.mit.edu	37	12	46244997	46244997	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr12:46244997C>T	uc001ros.1	+	15	3091	c.3091C>T	c.(3091-3093)CAG>TAG	p.Q1031*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q1031*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q487*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q658*|ARID2_uc001rou.1_Nonsense_Mutation_p.Q365*	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1031	Gln-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGTACAAGTTCAGCAGCCCCA	0.502													9	78	---	---	---	---	0	0	0.069234	0	0
ACVR1B	91	broad.mit.edu	37	12	52345548	52345548	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr12:52345548C>T	uc001rzn.2	+	1	63	c.21C>T	c.(19-21)GCC>GCT	p.A7A	ACVR1B_uc001rzl.2_Silent_p.A7A|ACVR1B_uc001rzm.2_Silent_p.A7A|ACVR1B_uc010snn.1_Silent_p.A7A	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	7					G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	CGGCCGGAGCCTCCTCCTTCT	0.517													3	8	---	---	---	---	0	0	0.004672	0	0
COPZ1	22818	broad.mit.edu	37	12	54741787	54741787	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr12:54741787G>A	uc001sfs.1	+	7	436	c.399G>A	c.(397-399)GTG>GTA	p.V133V	COPZ1_uc001sft.2_Silent_p.V82V|COPZ1_uc009znm.1_Silent_p.V141V|COPZ1_uc010sot.1_Silent_p.V110V	NM_016057	NP_057141	P61923	COPZ1_HUMAN	coatomer protein complex, subunit zeta 1	133					COPI coating of Golgi vesicle|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol					0						TTTGCAGGGTGATCCTAGAGA	0.512													8	69	---	---	---	---	0	0	0.105934	0	0
CHST11	50515	broad.mit.edu	37	12	104851270	104851270	+	Silent	SNP	C	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr12:104851270C>A	uc001tkx.1	+	2	372	c.81C>A	c.(79-81)ATC>ATA	p.I27I	CHST11_uc001tky.2_Silent_p.I27I	NM_018413	NP_060883	Q9NPF2	CHSTB_HUMAN	carbohydrate sulfotransferase 11	27	Helical; Signal-anchor for type II membrane protein; (Potential).				chondroitin sulfate biosynthetic process	Golgi membrane|integral to membrane	chondroitin 4-sulfotransferase activity|N-acetylgalactosamine 4-O-sulfotransferase activity				0						GATCCTTTATCCTGGTCATCT	0.532													6	91	---	---	---	---	0.00116845	0.00121339	0.021553	1	0
TPT1	7178	broad.mit.edu	37	13	45914212	45914212	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr13:45914212G>A	uc001uzy.1	-	3	303	c.210C>T	c.(208-210)GTC>GTT	p.V70V	TPT1_uc001uzz.1_Silent_p.V36V|SNORA31_uc001vaa.1_5'Flank|TPT1_uc010tfp.1_3'UTR|LOC100190939_uc010tfr.1_5'Flank|LOC100190939_uc001vac.2_5'Flank	NM_003295	NP_003286	P13693	TCTP_HUMAN	tumor protein, translationally-controlled 1	70					anti-apoptosis|response to virus	extracellular space|multivesicular body	calcium ion binding|protein binding				0		Lung NSC(96;0.00227)|Prostate(109;0.00578)|Breast(56;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000232)		TGACAATATCGACACCAGTGA	0.458													7	76	---	---	---	---	0	0	0.038147	0	0
EBPL	84650	broad.mit.edu	37	13	50237326	50237326	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr13:50237326C>T	uc001vdg.2	-	3	310	c.247G>A	c.(247-249)GAA>AAA	p.E83K	EBPL_uc001vdh.2_RNA|EBPL_uc001vdi.2_Missense_Mutation_p.E83K	NM_032565	NP_115954	Q9BY08	EBPL_HUMAN	emopamil binding related protein, delta8-delta7	83					sterol metabolic process	endoplasmic reticulum membrane|integral to membrane	cholestenol delta-isomerase activity				0		Lung NSC(96;0.000468)|Breast(56;0.0011)|Prostate(109;0.00243)|Hepatocellular(98;0.0556)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.06e-09)		TTGCCATATTCTTTCCCTAAA	0.398													6	81	---	---	---	---	0	0	0.021553	0	0
FARP1	10160	broad.mit.edu	37	13	99063014	99063014	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr13:99063014C>T	uc001vnj.2	+	15	1965	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F	FARP1_uc001vnh.2_Silent_p.F543F	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	543	DH.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			AAGCGTACTTCATAGCTAAGG	0.408													3	28	---	---	---	---	0	0	0.014758	0	0
UBR1	197131	broad.mit.edu	37	15	43348594	43348594	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr15:43348594C>G	uc001zqq.2	-	11	1295	c.1229G>C	c.(1228-1230)AGA>ACA	p.R410T	UBR1_uc010udk.1_Missense_Mutation_p.R410T	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	410					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		AGAGATACTTCTGTCATGATC	0.284													5	88	---	---	---	---	0	0	0.029380	0	0
SYT17	51760	broad.mit.edu	37	16	19195026	19195026	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr16:19195026G>A	uc002dfw.2	+	5	839	c.508G>A	c.(508-510)GAT>AAT	p.D170N	SYT17_uc002dfx.2_Missense_Mutation_p.D109N|SYT17_uc002dfy.2_Missense_Mutation_p.D166N|SYT17_uc002dfv.1_Missense_Mutation_p.D109N	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	170						membrane|synaptic vesicle	transporter activity			ovary(1)	1						CAACAGCGACGATGTGGACTC	0.567													9	75	---	---	---	---	0	0	0.047766	0	0
TMC5	79838	broad.mit.edu	37	16	19451644	19451644	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr16:19451644C>G	uc002dgc.3	+	3	1033	c.284C>G	c.(283-285)TCT>TGT	p.S95C	TMC5_uc010vaq.1_Missense_Mutation_p.S95C|TMC5_uc002dgb.3_Missense_Mutation_p.S95C|TMC5_uc010var.1_Missense_Mutation_p.S95C	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	95	Extracellular (Potential).					integral to membrane				skin(1)	1						TCTGCAGCCTCTAGAACAAGC	0.483													16	149	---	---	---	---	0	0	0.024245	0	0
SIAH1	6477	broad.mit.edu	37	16	48395650	48395650	+	Silent	SNP	A	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr16:48395650A>G	uc002efo.1	-	2	807	c.690T>C	c.(688-690)CAT>CAC	p.H230H	uc002efk.1_RNA|SIAH1_uc002efl.2_RNA|SIAH1_uc002efn.1_Silent_p.H261H	NM_003031	NP_003022	Q8IUQ4	SIAH1_HUMAN	seven in absentia homolog 1 isoform a	230	SBD.				axon guidance|cell cycle|neuron apoptosis|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	beta-catenin destruction complex|cytosol|nucleus	protein C-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		all_cancers(37;0.157)|all_lung(18;0.11)|Breast(268;0.238)				ATCGTCGCCTATGACCATTTA	0.443													3	34	---	---	---	---	0	0	0.004672	0	0
CTCF	10664	broad.mit.edu	37	16	67663340	67663340	+	Missense_Mutation	SNP	G	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr16:67663340G>C	uc002etl.2	+	10	2031	c.1741G>C	c.(1741-1743)GAT>CAT	p.D581H	CTCF_uc010cek.2_Missense_Mutation_p.D253H|CTCF_uc002etm.1_Missense_Mutation_p.D70H	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	581					chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		TGCTGGCCCAGATGGCGTAGA	0.408													7	57	---	---	---	---	0	0	0.029380	0	0
SLC12A4	6560	broad.mit.edu	37	16	67979417	67979417	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr16:67979417C>G	uc002euz.2	-	22	3028	c.2887G>C	c.(2887-2889)GAG>CAG	p.E963Q	LCAT_uc002euy.1_5'Flank|SLC12A4_uc010ceu.2_Missense_Mutation_p.E957Q|SLC12A4_uc010vkh.1_Missense_Mutation_p.E932Q|SLC12A4_uc010vki.1_Missense_Mutation_p.E957Q|SLC12A4_uc010vkj.1_Missense_Mutation_p.E965Q|SLC12A4_uc002eva.2_Missense_Mutation_p.E963Q	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	963	Cytoplasmic (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	TACAGGCTCTCCAGCCGCAGG	0.597													5	76	---	---	---	---	0	0	0.021553	0	0
CIRH1A	84916	broad.mit.edu	37	16	69201033	69201033	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr16:69201033C>G	uc002ews.3	+	16	1985	c.1889C>G	c.(1888-1890)TCA>TGA	p.S630*	CIRH1A_uc002ewr.2_3'UTR|CIRH1A_uc002ewt.3_Nonsense_Mutation_p.S547*|CIRH1A_uc010cfi.2_Nonsense_Mutation_p.S432*	NM_032830	NP_116219	Q969X6	CIR1A_HUMAN	cirhin	630						nucleolus	protein binding				0				OV - Ovarian serous cystadenocarcinoma(108;0.125)		ACGAATGAATCAGATGTCATC	0.363													4	84	---	---	---	---	0	0	0.009096	0	0
DEF8	54849	broad.mit.edu	37	16	90020690	90020691	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr16:90020690_90020691CC>TT	uc002fpn.1	+	3	302_303	c.213_214CC>TT	c.(211-216)TTCCGG>TTTTGG	p.R72W	DEF8_uc002fpl.2_Missense_Mutation_p.R11W|DEF8_uc002fpm.2_Missense_Mutation_p.R11W|DEF8_uc002fpo.1_Missense_Mutation_p.R11W|DEF8_uc002fpp.1_Missense_Mutation_p.R11W|DEF8_uc010vpq.1_Intron|DEF8_uc010vpr.1_Missense_Mutation_p.R11W	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	72					intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		TGGCCCGTTTCCGGCAGGCCCA	0.644													4	80	---	---	---	---	0	0	0.004672	0	0
TSR1	55720	broad.mit.edu	37	17	2233812	2233812	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:2233812C>T	uc002fuj.2	-	10	2724	c.1767G>A	c.(1765-1767)CAG>CAA	p.Q589Q	SNORD91B_uc002fuk.1_5'Flank|SNORD91A_uc002ful.1_5'Flank	NM_018128	NP_060598	Q2NL82	TSR1_HUMAN	TSR1, 20S rRNA accumulation	589					ribosome assembly	nucleolus	protein binding			ovary(1)	1						AATTTACCTTCTGTTCATGAG	0.433													4	75	---	---	---	---	0	0	0.009096	0	0
CHD3	1107	broad.mit.edu	37	17	7798683	7798683	+	Missense_Mutation	SNP	G	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:7798683G>C	uc002gje.2	+	10	1680	c.1530G>C	c.(1528-1530)CAG>CAC	p.Q510H	CHD3_uc002gjd.2_Missense_Mutation_p.Q569H|CHD3_uc002gjf.2_Missense_Mutation_p.Q510H|CHD3_uc002gjg.1_Missense_Mutation_p.Q338H	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	510	Chromo 1.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				GTCGAGTGCAGAAGATCCTAC	0.557													8	138	---	---	---	---	0	0	0.058154	0	0
ALOX12B	242	broad.mit.edu	37	17	7979610	7979610	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:7979610G>A	uc002gjy.1	-	11	1676	c.1415C>T	c.(1414-1416)TCG>TTG	p.S472L		NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	472	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						GGTGAGCTCCGACAGAGCCCG	0.607										Multiple Myeloma(8;0.094)			5	26	---	---	---	---	0	0	0.014758	0	0
MYH3	4621	broad.mit.edu	37	17	10533478	10533478	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:10533478C>T	uc002gmq.1	-	37	5570	c.5493G>A	c.(5491-5493)CAG>CAA	p.Q1831Q		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1831	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TGTTCTTCTTCTGCTCTCCCT	0.552													19	226	---	---	---	---	0	0	0.062417	0	0
FLII	2314	broad.mit.edu	37	17	18150552	18150552	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:18150552C>G	uc002gsr.1	-	21	2658	c.2607G>C	c.(2605-2607)AAG>AAC	p.K869N	FLII_uc002gsq.1_Missense_Mutation_p.K740N|FLII_uc010cpy.1_Missense_Mutation_p.K858N|FLII_uc010vxn.1_Missense_Mutation_p.K838N|FLII_uc010vxo.1_Missense_Mutation_p.K814N|FLII_uc002gss.1_Missense_Mutation_p.K868N	NM_002018	NP_002009	Q13045	FLII_HUMAN	flightless I homolog	869					multicellular organismal development|muscle contraction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	actin binding			central_nervous_system(1)|skin(1)	2	all_neural(463;0.228)					TCTGGTCTTTCTTCTCGGCGT	0.522													7	55	---	---	---	---	0	0	0.038147	0	0
ITGA2B	3674	broad.mit.edu	37	17	42458006	42458006	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:42458006G>A	uc002igt.1	-	14	1433	c.1401C>T	c.(1399-1401)ATC>ATT	p.I467I	ITGA2B_uc002igu.1_5'UTR	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	467	Extracellular (Potential).|FG-GAP 7.				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	AAGCTCCCACGATCAGGTCTA	0.602													12	77	---	---	---	---	0	0	0.105934	0	0
CBX1	10951	broad.mit.edu	37	17	46148811	46148811	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:46148811C>G	uc002ind.3	-	5	1025	c.544G>C	c.(544-546)GAT>CAT	p.D182H	CBX1_uc002ine.3_Missense_Mutation_p.D182H	NM_006807	NP_006798	P83916	CBX1_HUMAN	heterochromatin protein 1-beta	182						nuclear heterochromatin|nucleoplasm|spindle	chromatin binding|enzyme binding				0						TTCTTGTCATCTTTTTTGTCA	0.493													3	43	---	---	---	---	0	0	0.004672	0	0
C17orf28	283987	broad.mit.edu	37	17	72959073	72959073	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:72959073C>T	uc002jmj.3	-	4	640	c.491G>A	c.(490-492)CGG>CAG	p.R164Q	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Missense_Mutation_p.R163Q	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	164						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					AGTGCTCCTCCGGTGGCTCTG	0.662													8	72	---	---	---	---	0	0	0.047766	0	0
KIAA1468	57614	broad.mit.edu	37	18	59947626	59947626	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr18:59947626G>A	uc002lil.2	+	23	3216	c.3001G>A	c.(3001-3003)GAC>AAC	p.D1001N	KIAA1468_uc010xel.1_Intron|KIAA1468_uc002lim.2_Intron	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	1001							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				AGCGTTAGTTGACAAGCGGGT	0.448													9	127	---	---	---	---	0	0	0.093190	0	0
FZR1	51343	broad.mit.edu	37	19	3523039	3523039	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:3523039G>A	uc010dtk.2	+	1	86	c.52G>A	c.(52-54)GAG>AAG	p.E18K	FZR1_uc002lxt.2_Missense_Mutation_p.E18K|FZR1_uc002lxv.2_Missense_Mutation_p.E18K	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	18					activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		CATCCAGAATGAGAACACGAT	0.687													16	120	---	---	---	---	0	0	0.055883	0	0
GIPC3	126326	broad.mit.edu	37	19	3586871	3586871	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:3586871C>T	uc002lyd.3	+	3	498	c.471C>T	c.(469-471)ATC>ATT	p.I157I		NM_133261	NP_573568	Q8TF64	GIPC3_HUMAN	GIPC PDZ domain containing family, member 3	157	PDZ.									breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGACAGCATCGAAGCCATCA	0.627											OREG0025154	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	42	---	---	---	---	0	0	0.014758	0	0
HDGFRP2	84717	broad.mit.edu	37	19	4501226	4501226	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:4501226G>A	uc002mao.2	+	16	1906	c.1813G>A	c.(1813-1815)GAG>AAG	p.E605K	HDGFRP2_uc002map.2_Missense_Mutation_p.E605K|HDGFRP2_uc010dua.2_Intron|HDGFRP2_uc002maq.1_Missense_Mutation_p.E75K	NM_001001520	NP_001001520	Q7Z4V5	HDGR2_HUMAN	hepatoma-derived growth factor-related protein 2	605					transcription, DNA-dependent	nucleus	DNA binding|protein binding				0						AGTGAATGGCGAGGCCACATC	0.637													9	80	---	---	---	---	0	0	0.058154	0	0
ZNF177	7730	broad.mit.edu	37	19	9489680	9489680	+	Missense_Mutation	SNP	G	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:9489680G>C	uc002mli.2	+	9	739	c.76G>C	c.(76-78)GAG>CAG	p.E26Q	ZNF177_uc002mlj.2_5'UTR|ZNF177_uc002mlk.2_Missense_Mutation_p.E26Q	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	26	KRAB.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTTTTCCCAGGAGGAGTGGGC	0.458													5	53	---	---	---	---	0	0	0.021553	0	0
ARRDC2	27106	broad.mit.edu	37	19	18119799	18119799	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:18119799G>A	uc002nhv.2	+	3	504	c.361G>A	c.(361-363)GAG>AAG	p.E121K	ARRDC2_uc002nhu.2_Missense_Mutation_p.E116K	NM_015683	NP_056498	Q8TBH0	ARRD2_HUMAN	arrestin domain containing 2 isoform 1	121										pancreas(1)	1						GACATCCTTCGAGGGCAAACA	0.617													6	134	---	---	---	---	0	0	0.038147	0	0
PSG5	5673	broad.mit.edu	37	19	43680121	43680121	+	Missense_Mutation	SNP	G	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:43680121G>C	uc002ovu.2	-	3	741	c.610C>G	c.(610-612)CTA>GTA	p.L204V	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.L204V|PSG5_uc002ovv.2_Missense_Mutation_p.L297V|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	204	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				ACACTGGGTAGAATGAGGATC	0.507													13	131	---	---	---	---	0	0	0.020292	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45889407	45889407	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:45889407G>A	uc002pbn.2	-	9	1924	c.1847C>T	c.(1846-1848)TCC>TTC	p.S616F	PPP1R13L_uc002pbm.2_Missense_Mutation_p.S195F|PPP1R13L_uc002pbo.2_Missense_Mutation_p.S616F	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	616					apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		CTTGCGCGGGGAGCCCGCCTT	0.597													4	10	---	---	---	---	0	0	0.014758	0	0
PRKD2	25865	broad.mit.edu	37	19	47177807	47177807	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:47177807C>T	uc002pfh.2	-	19	2952	c.2610G>A	c.(2608-2610)GGG>GGA	p.G870G	PRKD2_uc002pfd.2_Silent_p.G244G|PRKD2_uc010eks.2_Silent_p.G273G|PRKD2_uc010ekt.2_Silent_p.G137G|PRKD2_uc002pfe.2_Silent_p.G400G|PRKD2_uc002pff.2_Silent_p.G390G|PRKD2_uc002pfg.2_Silent_p.G713G|PRKD2_uc002pfi.2_Silent_p.G870G|PRKD2_uc002pfj.2_Silent_p.G870G|PRKD2_uc010xye.1_Silent_p.G880G|PRKD2_uc002pfk.2_Silent_p.G713G	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	870			G -> E (in a gastric adenocarcinoma sample; somatic mutation).		cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity	p.G870E(1)		ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		GCTCCGCCAGCCCCTGCATGT	0.632													5	36	---	---	---	---	0	0	0.029380	0	0
SHANK1	50944	broad.mit.edu	37	19	51172499	51172499	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr19:51172499C>T	uc002psx.1	-	22	2737	c.2718G>A	c.(2716-2718)ATG>ATA	p.M906I	SHANK1_uc002psw.1_Missense_Mutation_p.M290I	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	906					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GGCTGAATTTCATGGCTGGGG	0.647											OREG0025642	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	41	---	---	---	---	0	0	0.004672	0	0
FBXO11	80204	broad.mit.edu	37	2	48040983	48040983	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr2:48040983C>G	uc010fbl.2	-	17	1892	c.1778G>C	c.(1777-1779)AGA>ACA	p.R593T	FBXO11_uc002rwe.2_Missense_Mutation_p.R593T|FBXO11_uc002rwf.2_Missense_Mutation_p.R593T|FBXO11_uc010fbk.2_Missense_Mutation_p.R101T	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	677	PbH1 13.				ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TTTGTTGCGTCTAATTTTGGG	0.348													6	34	---	---	---	---	0	0	0.038147	0	0
ERCC3	2071	broad.mit.edu	37	2	128036808	128036808	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr2:128036808C>G	uc002toh.1	-	10	1766	c.1671G>C	c.(1669-1671)AAG>AAC	p.K557N	ERCC3_uc002toe.1_Missense_Mutation_p.K312N|ERCC3_uc002tof.1_Missense_Mutation_p.K493N|ERCC3_uc002tog.1_Missense_Mutation_p.K493N	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	557	Helicase C-terminal.				cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		AGACAATAATCTTGTCATTCC	0.398			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				5	29	---	---	---	---	0	0	0.021553	0	0
SMPD4	55627	broad.mit.edu	37	2	130910385	130910385	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr2:130910385C>T	uc002tqq.1	-	20	2864	c.2344G>A	c.(2344-2346)GAA>AAA	p.E782K	SMPD4_uc002tqo.1_Missense_Mutation_p.E314K|SMPD4_uc002tqp.1_Missense_Mutation_p.E521K|SMPD4_uc010yzy.1_Missense_Mutation_p.E531K|SMPD4_uc010yzz.1_Missense_Mutation_p.E446K|SMPD4_uc002tqr.1_Missense_Mutation_p.E753K|SMPD4_uc002tqs.1_Missense_Mutation_p.E650K|SMPD4_uc002tqt.1_Missense_Mutation_p.E631K|SMPD4_uc010zaa.1_Missense_Mutation_p.E640K|SMPD4_uc010zab.1_Missense_Mutation_p.E680K|SMPD4_uc010zac.1_Missense_Mutation_p.E523K|SMPD4_uc010zad.1_Missense_Mutation_p.E418K	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	743					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	AGCCCAGGTTCTGTGAGGTGG	0.672													3	12	---	---	---	---	0	0	0.004672	0	0
IRS1	3667	broad.mit.edu	37	2	227662792	227662792	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr2:227662792G>A	uc002voh.3	-	1	715	c.663C>T	c.(661-663)TTC>TTT	p.F221F		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	221	IRS-type PTB.				fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		CCTCGATGAAGAAGAAGTTTT	0.607											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	114	---	---	---	---	0	0	0.058154	0	0
SLC12A5	57468	broad.mit.edu	37	20	44670044	44670044	+	Missense_Mutation	SNP	G	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr20:44670044G>C	uc010zxl.1	+	8	1076	c.1000G>C	c.(1000-1002)GAG>CAG	p.E334Q	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.E311Q	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	334	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	GGAAGGAAATGAGACGGTGAC	0.542													6	74	---	---	---	---	0	0	0.021553	0	0
TRPM2	7226	broad.mit.edu	37	21	45799002	45799002	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr21:45799002C>G	uc002zet.1	+	9	1350	c.1137C>G	c.(1135-1137)ATC>ATG	p.I379M	TRPM2_uc002zeu.1_Missense_Mutation_p.I379M|TRPM2_uc002zew.1_Missense_Mutation_p.I379M|TRPM2_uc010gpt.1_Missense_Mutation_p.I379M|TRPM2_uc002zex.1_Missense_Mutation_p.I165M	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	379	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCTCCCTGATCCAGCAGAAAC	0.597													4	79	---	---	---	---	0	0	0.009096	0	0
LOC96610	96610	broad.mit.edu	37	22	23006961	23006961	+	RNA	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr22:23006961C>T	uc011aim.1	+	119		c.7564C>T								Parts of antibodies, mostly variable regions.												0						GGCTCTGCTCCTCCTCACCCT	0.627													2	10	---	---	---	---	0	0	0.004672	0	0
EIF3D	8664	broad.mit.edu	37	22	36920659	36920659	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr22:36920659C>T	uc003apq.2	-	4	406	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	EIF3D_uc003apr.2_Missense_Mutation_p.R97Q|EIF3D_uc011ams.1_5'UTR|EIF3D_uc011amt.1_Intron	NM_003753	NP_003744	O15371	EIF3D_HUMAN	eukaryotic translation initiation factor 3	97						cytosol|eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			pancreas(1)	1						AAATCTCATTCGATTCCGCTG	0.512													14	114	---	---	---	---	0	0	0.020292	0	0
ITPR1	3708	broad.mit.edu	37	3	4715019	4715019	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr3:4715019G>A	uc003bqa.2	+	21	2752	c.2404G>A	c.(2404-2406)GTG>ATG	p.V802M	ITPR1_uc010hca.1_Missense_Mutation_p.V787M|ITPR1_uc011asu.1_Intron|ITPR1_uc010hcb.1_Missense_Mutation_p.V787M	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	802	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGTCACCCCCGTGAAATATGC	0.562													12	124	---	---	---	---	0	0	0.105934	0	0
EDEM1	9695	broad.mit.edu	37	3	5244672	5244672	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr3:5244672C>T	uc003bqi.2	+	5	1012	c.880C>T	c.(880-882)CCT>TCT	p.P294S	EDEM1_uc011asz.1_Missense_Mutation_p.P72S|EDEM1_uc003bqh.2_Missense_Mutation_p.P294S	NM_014674	NP_055489	Q92611	EDEM1_HUMAN	ER degradation enhancer, mannosidase alpha-like	294	Lumenal (Potential).				ER-associated protein catabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	integral to endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			ovary(2)|breast(1)	3				Epithelial(13;0.0588)|OV - Ovarian serous cystadenocarcinoma(96;0.0682)		GACAGGAGTTCCTCCTGACAC	0.512													7	76	---	---	---	---	0	0	0.038147	0	0
NPRL2	10641	broad.mit.edu	37	3	50386439	50386439	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr3:50386439C>T	uc003daj.1	-	5	854	c.451G>A	c.(451-453)GAG>AAG	p.E151K	NPRL2_uc003dai.1_Missense_Mutation_p.E31K|CYB561D2_uc003dak.2_5'Flank|CYB561D2_uc003dal.2_5'Flank|CYB561D2_uc003dam.2_5'Flank	NM_006545	NP_006536	Q8WTW4	NPRL2_HUMAN	tumor suppressor candidate 4	151					negative regulation of kinase activity		protein binding|protein kinase activity			lung(1)	1						GTGTTGGACTCATCTGCAGGG	0.423													9	101	---	---	---	---	0	0	0.069234	0	0
ALAS1	211	broad.mit.edu	37	3	52238848	52238848	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr3:52238848C>T	uc003dcy.1	+	6	1054	c.717C>T	c.(715-717)CTC>CTT	p.L239L	ALAS1_uc003dcz.1_Silent_p.L239L|ALAS1_uc011bec.1_Silent_p.L256L	NM_000688	NP_000679	P13196	HEM1_HUMAN	5-aminolevulinate synthase 1 precursor	239					heme biosynthetic process	mitochondrial matrix	5-aminolevulinate synthase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(2)|upper_aerodigestive_tract(1)	3				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.000583)|KIRC - Kidney renal clear cell carcinoma(197;0.000751)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CAGACTCCCTCATCACCAAAA	0.473													7	91	---	---	---	---	0	0	0.047766	0	0
PARP14	54625	broad.mit.edu	37	3	122437591	122437591	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr3:122437591C>G	uc003efq.3	+	14	4652	c.4593C>G	c.(4591-4593)ATC>ATG	p.I1531M	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.I1248M|PARP14_uc003efs.1_Missense_Mutation_p.I1248M	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	1531	WWE.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		CAGATTGTATCAGTGAGTTTA	0.388													6	159	---	---	---	---	0	0	0.047766	0	0
AADACL2	344752	broad.mit.edu	37	3	151475099	151475099	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr3:151475099C>T	uc003ezc.2	+	5	1043	c.923C>T	c.(922-924)TCA>TTA	p.S308L	AADACL2_uc010hvn.2_Missense_Mutation_p.S95L	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	308						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			CTTAGTTATTCATTGCCAGGA	0.363													8	105	---	---	---	---	0	0	0.080935	0	0
CD38	952	broad.mit.edu	37	4	15780234	15780234	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr4:15780234G>A	uc011bxc.1	+	1	304	c.197G>A	c.(196-198)CGA>CAA	p.R66Q	CD38_uc003goj.1_Missense_Mutation_p.R66Q|CD38_uc003gol.1_Missense_Mutation_p.R66Q	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	66	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						GTCCTGGCGCGATGCGTCAAG	0.672													11	62	---	---	---	---	0	0	0.080935	0	0
MUC7	4589	broad.mit.edu	37	4	71346814	71346814	+	Nonsense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr4:71346814C>G	uc011cat.1	+	4	641	c.353C>G	c.(352-354)TCA>TGA	p.S118*	MUC7_uc011cau.1_Nonsense_Mutation_p.S118*|MUC7_uc003hfj.2_Nonsense_Mutation_p.S118*|uc011cav.1_RNA	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	118	Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACTTTCCCATCAGCTTCCACC	0.428													5	69	---	---	---	---	0	0	0.029380	0	0
PRDM8	56978	broad.mit.edu	37	4	81122505	81122505	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr4:81122505C>T	uc010ijo.2	+	7	1120	c.281C>T	c.(280-282)TCG>TTG	p.S94L	PRDM8_uc003hmb.3_Missense_Mutation_p.S94L|PRDM8_uc003hmc.3_Missense_Mutation_p.S94L	NM_020226	NP_064611	Q9NQV8	PRDM8_HUMAN	PR domain containing 8	94	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TTGGTCCAATCGGCCAGAGAT	0.483													8	33	---	---	---	---	0	0	0.038147	0	0
NNT	23530	broad.mit.edu	37	5	43616136	43616136	+	Missense_Mutation	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr5:43616136G>A	uc003joe.2	+	4	823	c.568G>A	c.(568-570)GAT>AAT	p.D190N	NNT_uc003jof.2_Missense_Mutation_p.D190N	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	190	Mitochondrial matrix.				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	TCAGGGATATGATGCGCTAAG	0.443													9	83	---	---	---	---	0	0	0.093190	0	0
PCDHB9	56127	broad.mit.edu	37	5	140567496	140567496	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr5:140567496C>T	uc003liw.1	+	1	604	c.604C>T	c.(604-606)CGG>TGG	p.R202W		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	202	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCACTGGATCGGGAGGAGCA	0.483													22	168	---	---	---	---	0	0	0.083992	0	0
BNIP1	662	broad.mit.edu	37	5	172573902	172573902	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr5:172573902C>G	uc003mcj.3	+	2	222	c.118C>G	c.(118-120)CTT>GTT	p.L40V	BNIP1_uc003mci.3_Missense_Mutation_p.L40V|BNIP1_uc003mck.3_Missense_Mutation_p.L40V|BNIP1_uc003mcl.3_Missense_Mutation_p.L40V	NM_001205	NP_001196	Q12981	SEC20_HUMAN	BCL2/adenovirus E1B 19kD interacting protein 1	40	Potential.|Cytoplasmic (Potential).				anti-apoptosis|apoptosis|endoplasmic reticulum membrane fusion|endoplasmic reticulum organization|induction of apoptosis|vesicle-mediated transport	integral to endoplasmic reticulum membrane|nuclear envelope|SNARE complex	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			CTTAAGTGCTCTTACTGAACT	0.408													6	46	---	---	---	---	0	0	0.029380	0	0
CPEB4	80315	broad.mit.edu	37	5	173337561	173337561	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr5:173337561G>A	uc003mcs.3	+	2	2567	c.1161G>A	c.(1159-1161)GAG>GAA	p.E387E	CPEB4_uc010jju.1_Silent_p.E387E|CPEB4_uc010jjv.2_Silent_p.E387E|CPEB4_uc011dfg.1_Silent_p.E387E|CPEB4_uc003mct.3_Silent_p.E5E|CPEB4_uc003mcu.3_Silent_p.E5E	NM_030627	NP_085130	Q17RY0	CPEB4_HUMAN	cytoplasmic polyadenylation element binding	387							nucleotide binding|RNA binding				0	Renal(175;0.000159)|Lung NSC(126;0.0128)|all_lung(126;0.0202)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			ACTCACTGGAGAGTTCACTCA	0.343													9	115	---	---	---	---	0	0	0.069234	0	0
FLT4	2324	broad.mit.edu	37	5	180048729	180048729	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr5:180048729C>T	uc003mma.3	-	13	1912	c.1833G>A	c.(1831-1833)AAG>AAA	p.K611K	FLT4_uc003mlz.3_Silent_p.K611K|FLT4_uc003mmb.1_Silent_p.K144K|FLT4_uc011dgy.1_Silent_p.K611K	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	611	Ig-like C2-type 6.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GATGCACGTTCTTGCAGTCGA	0.672									Congenital_Hereditary_Lymphedema				5	62	---	---	---	---	0	0	0.021553	0	0
TNF	7124	broad.mit.edu	37	6	31543617	31543617	+	Silent	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr6:31543617C>T	uc003nui.2	+	1	268	c.99C>T	c.(97-99)CTC>CTT	p.L33L	TNF_uc003nuj.2_5'Flank	NM_000594	NP_000585	P01375	TNFA_HUMAN	tumor necrosis factor alpha	33	Cytoplasmic (Potential).				activation of caspase activity|activation of MAPK activity|activation of MAPKKK activity|anti-apoptosis|cellular response to nicotine|chronic inflammatory response to antigenic stimulus|embryonic digestive tract development|induction of apoptosis via death domain receptors|induction of necroptosis by extracellular signals|leukocyte tethering or rolling|necrotic cell death|negative regulation of branching involved in lung morphogenesis|negative regulation of cytokine secretion involved in immune response|negative regulation of fat cell differentiation|negative regulation of interleukin-6 production|negative regulation of lipid catabolic process|negative regulation of lipid storage|negative regulation of viral genome replication|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of chemokine biosynthetic process|positive regulation of chemokine production|positive regulation of cytokine secretion|positive regulation of ERK1 and ERK2 cascade|positive regulation of fever generation|positive regulation of heterotypic cell-cell adhesion|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of membrane protein ectodomain proteolysis|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of NFAT protein import into nucleus|positive regulation of nitric oxide biosynthetic process|positive regulation of osteoclast differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of podosome assembly|positive regulation of protein complex disassembly|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D biosynthetic process|protein import into nucleus, translocation|receptor biosynthetic process|regulation of insulin secretion|response to glucocorticoid stimulus|response to salt stress|response to virus|sequestering of triglyceride|transformed cell apoptosis|tumor necrosis factor-mediated signaling pathway	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane raft|phagocytic cup|recycling endosome	cytokine activity|identical protein binding|protease binding|transcription regulatory region DNA binding|tumor necrosis factor receptor binding			ovary(1)|pancreas(1)|skin(1)	3		Ovarian(999;0.00556)			Adalimumab(DB00051)|Adenosine(DB00640)|Amrinone(DB01427)|Atorvastatin(DB01076)|Chloroquine(DB00608)|Clenbuterol(DB01407)|Etanercept(DB00005)|Glucosamine(DB01296)|Infliximab(DB00065)|Naltrexone(DB00704)|Pranlukast(DB01411)|Procaterol(DB01366)|Saquinavir(DB01232)|Simvastatin(DB00641)|Thalidomide(DB01041)	GCTTGTTCCTCAGCCTCTTCT	0.647									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				6	103	---	---	---	---	0	0	0.038147	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333807	33333807	+	Missense_Mutation	SNP	T	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr6:33333807T>C	uc003shx.2	-	1	333	c.199A>G	c.(199-201)ATG>GTG	p.M67V		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						CAGGAGGGCATCACCATCTTC	0.567													6	116	---	---	---	---	0	0	0.047766	0	0
FGD2	221472	broad.mit.edu	37	6	36995226	36995226	+	Missense_Mutation	SNP	G	C	C			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr6:36995226G>C	uc010jwp.1	+	15	1798	c.1627G>C	c.(1627-1629)GAC>CAC	p.D543H	FGD2_uc003ong.2_Missense_Mutation_p.D265H|FGD2_uc011dtv.1_Missense_Mutation_p.D171H|FGD2_uc003onj.1_Missense_Mutation_p.D120H	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	543					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						AGCCACGCCTGACCAGAGCCT	0.522													18	177	---	---	---	---	0	0	0.043863	0	0
PPP2R5D	5528	broad.mit.edu	37	6	42976211	42976211	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr6:42976211C>T	uc003oth.2	+	9	1110	c.1024C>T	c.(1024-1026)CAG>TAG	p.Q342*	MEA1_uc010jyc.1_Intron|PPP2R5D_uc003otg.2_Nonsense_Mutation_p.Q310*|PPP2R5D_uc010jyd.2_Nonsense_Mutation_p.Q236*|PPP2R5D_uc011dva.1_Nonsense_Mutation_p.Q191*|PPP2R5D_uc003oti.2_Nonsense_Mutation_p.Q191*|PPP2R5D_uc003otj.2_Nonsense_Mutation_p.Q191*	NM_006245	NP_006236	Q14738	2A5D_HUMAN	delta isoform of regulatory subunit B56, protein	342					nervous system development|signal transduction	cytoplasm|nucleus|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			breast(1)|central_nervous_system(1)	2			Colorectal(64;0.00237)|all cancers(41;0.00411)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0664)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CTACCACCCTCAGGTGAGCTG	0.532													5	54	---	---	---	---	0	0	0.021553	0	0
KCNQ5	56479	broad.mit.edu	37	6	73834209	73834209	+	Missense_Mutation	SNP	G	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr6:73834209G>T	uc003pgk.2	+	9	1568	c.1221G>T	c.(1219-1221)AAG>AAT	p.K407N	KCNQ5_uc003pgj.3_Missense_Mutation_p.K407N|KCNQ5_uc011dyh.1_Missense_Mutation_p.K407N|KCNQ5_uc011dyi.1_Intron|KCNQ5_uc010kat.2_Intron|KCNQ5_uc011dyj.1_Missense_Mutation_p.K407N|KCNQ5_uc011dyk.1_Intron	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	407					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		GCACCTGAAGGAAAGAACAAG	0.383													4	50	---	---	---	---	0.00024832	0.000262927	0.009096	1	0
TIAM2	26230	broad.mit.edu	37	6	155450556	155450556	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr6:155450556C>T	uc003qqb.2	+	6	1472	c.199C>T	c.(199-201)CAC>TAC	p.H67Y	TIAM2_uc003qqe.2_Missense_Mutation_p.H67Y	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	67					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		CTGCCTTTCTCACTTTAAGAG	0.547													5	32	---	---	---	---	0	0	0.014758	0	0
LINGO2	158038	broad.mit.edu	37	9	27949733	27949733	+	Missense_Mutation	SNP	C	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr9:27949733C>T	uc003zqu.1	-	2	1131	c.937G>A	c.(937-939)GAG>AAG	p.E313K	LINGO2_uc010mjf.1_Missense_Mutation_p.E313K|LINGO2_uc003zqv.1_Missense_Mutation_p.E313K	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	313	LRR 11.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		GAGTGAGGCTCAATGGTGCGA	0.542													5	69	---	---	---	---	0	0	0.021553	0	0
TMEM2	23670	broad.mit.edu	37	9	74300217	74300217	+	Missense_Mutation	SNP	C	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr9:74300217C>G	uc011lsa.1	-	24	4588	c.4048G>C	c.(4048-4050)GAA>CAA	p.E1350Q	TMEM2_uc011lrz.1_Missense_Mutation_p.E343Q|TMEM2_uc010mos.2_Missense_Mutation_p.E1287Q|TMEM2_uc011lsb.1_RNA|TMEM2_uc004aik.2_Missense_Mutation_p.E184Q	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	1350						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		ATGAATTGTTCAAGCACCCCA	0.458													7	84	---	---	---	---	0	0	0.058154	0	0
FAM47C	442444	broad.mit.edu	37	X	37027623	37027623	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chrX:37027623G>A	uc004ddl.1	+	1	1154	c.1140G>A	c.(1138-1140)CCG>CCA	p.P380P		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	380										ovary(3)	3						ATCTCTGCCCGGAACCTCCCA	0.617													3	48	---	---	---	---	0	0	0.004672	0	0
PHF16	9767	broad.mit.edu	37	X	46898446	46898446	+	Silent	SNP	G	A	A			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chrX:46898446G>A	uc004dgx.2	+	8	1002	c.951G>A	c.(949-951)TTG>TTA	p.L317L	PHF16_uc004dgy.2_Silent_p.L317L	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	317					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0						TGTGCAAGTTGAAGACGGGGG	0.468													6	24	---	---	---	---	0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	1	152716737	152716738	+	IGR	INS	-	T	T			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr1:152716737_152716738insT								C1orf68 (23833 upstream) : KPRP (13768 downstream)																							GCACTGATTTCTTTTTTTTTCT	0.416													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46427466	46427466	+	IGR	DEL	A	-	-			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr16:46427466delA								None (None upstream) : ANKRD26P1 (75783 downstream)																							aatggactcgaatggaatcat	0.000													2	4	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684390	26684391	+	Splice_Site	INS	-	C	C	rs148075904	by1000genomes	TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:26684390_26684391insC	uc002haz.2	-	3	211	c.79_splice	c.e3+0	p.P27_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		GCACAGAGCGGCTTTGCCACCG	0.762													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	81026101	81026102	+	IGR	INS	-	G	G			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr17:81026101_81026102insG								B3GNTL1 (16415 upstream) : METRNL (11465 downstream)																							gaggcgacagcgggggcggcag	0.059													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	49512891	49512892	+	IGR	INS	-	GGCAGG	GGCAGG	rs66866671		TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr22:49512891_49512892insGGCAGG								FAM19A5 (365149 upstream) : C22orf34 (295284 downstream)																							GACCTTGTGCAggcaggggcag	0.248													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	189192022	189192023	+	IGR	INS	-	CAG	CAG	rs138764960	by1000genomes	TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr4:189192022_189192023insCAG								TRIML1 (123373 upstream) : None (None downstream)																							agcagccccaccagcagcagca	0.000													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	158195314	158195315	+	IGR	DEL	GA	-	-			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr6:158195314_158195315delGA								ZDHHC14 (100338 upstream) : SNX9 (48979 downstream)																							gtggaggagggatgtgggaggg	0.287													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	170406357	170406368	+	IGR	DEL	CCCTGCCCTGCT	-	-	rs76907063	byFrequency	TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr6:170406357_170406368delCCCTGCCCTGCT								C6orf208 (203388 upstream) : LOC154449 (157054 downstream)																							ctgccctgccccctgccctgctccctgccctg	0.236													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	85816943	85816943	+	IGR	DEL	A	-	-			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr9:85816943delA								RASEF (138900 upstream) : FRMD3 (40962 downstream)																							ATCTCCAGTTATGGCCCTCTG	0.483													2	4	---	---	---	---					
DNAJC25	548645	broad.mit.edu	37	9	114393996	114393996	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DO-A2HM-01B-11D-A22D-08	TCGA-DO-A2HM-10B-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	a4db75b1-bd83-4158-a816-9d95c4ebdd8e	89bf52a8-dfde-48d5-96ee-d81e013d6ca1	g.chr9:114393996delG	uc004bfl.2	+	1	365	c.309delG	c.(307-309)CTGfs	p.L103fs	DNAJC25-GNG10_uc004bfn.2_Frame_Shift_Del_p.L103fs|uc004bfk.3_5'Flank|DNAJC25_uc004bfm.2_5'UTR	NM_001015882	NP_001015882	Q9H1X3	DJC25_HUMAN	DnaJ (Hsp40) homolog, subfamily C , member 25	103	J.				protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0						CTTTCCTGCTGGTGGCAACCG	0.741													2	4	---	---	---	---					
