Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AJAP1	55966	broad.mit.edu	37	1	4832584	4832584	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr1:4832584C>T	uc001alm.1	+	4	1543	c.1162C>T	c.(1162-1164)CGA>TGA	p.R388*	AJAP1_uc001aln.2_Nonsense_Mutation_p.R388*	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	388	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		TAATGGAAACCGGTAAGCTCG	0.592000													4	26	---	---	---	---	0	0	0.009096	0	0
LUZP1	7798	broad.mit.edu	37	1	23418878	23418878	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr1:23418878C>A	uc001bgk.2	-	4	2261	c.1877G>T	c.(1876-1878)GGG>GTG	p.G626V	LUZP1_uc010odv.1_Missense_Mutation_p.G626V|LUZP1_uc001bgl.2_Missense_Mutation_p.G626V|LUZP1_uc001bgm.1_Missense_Mutation_p.G626V	NM_033631	NP_361013	Q86V48	LUZP1_HUMAN	leucine zipper protein 1	626						nucleus					0		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Ovarian(437;0.00373)|Breast(348;0.00815)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.88e-27)|Colorectal(126;8.36e-08)|COAD - Colon adenocarcinoma(152;4.31e-06)|GBM - Glioblastoma multiforme(114;8.64e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00112)|KIRC - Kidney renal clear cell carcinoma(1967;0.00176)|STAD - Stomach adenocarcinoma(196;0.0146)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.0967)|LUSC - Lung squamous cell carcinoma(448;0.199)		TTGATTAACCCCTTCTTTATG	0.473000													4	149	---	---	---	---	3.59834e-05	4.41614e-05	0.021553	1	0
HIST3H2A	92815	broad.mit.edu	37	1	228645400	228645400	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr1:228645400T>C	uc001hsy.2	-	1	161	c.119A>G	c.(118-120)TAT>TGT	p.Y40C	HIST3H2BB_uc001hsz.2_5'Flank	NM_033445	NP_254280	Q7L7L0	H2A3_HUMAN	histone cluster 3, H2a	40					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)	1		Prostate(94;0.183)				GCGCTCCGAATAGTTGCCCTT	0.721000													3	20	---	---	---	---	0	0	0.115264	0	0
MMRN2	79812	broad.mit.edu	37	10	88704974	88704974	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr10:88704974G>T	uc001kea.2	-	4	579	c.452C>A	c.(451-453)CCT>CAT	p.P151H	MMRN2_uc010qmn.1_Intron|MMRN2_uc009xtb.2_Missense_Mutation_p.P108H	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	151						extracellular space				large_intestine(1)	1						TCCATCCTGAGGTTCCTGGTG	0.562000													4	34	---	---	---	---	3.59834e-05	4.41614e-05	0.021553	1	0
OR56A1	120796	broad.mit.edu	37	11	6048624	6048624	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr11:6048624C>T	uc010qzw.1	-	1	311	c.311G>A	c.(310-312)TGC>TAC	p.C104Y		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	104	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGGAGGAAGCAGGCAGGGAA	0.552000													4	53	---	---	---	---	0	0	0.009096	0	0
OR2D3	120775	broad.mit.edu	37	11	6942667	6942667	+	Silent	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr11:6942667C>T	uc010rav.1	+	1	435	c.435C>T	c.(433-435)CCC>CCT	p.P145P		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	145	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCTGCAAGCCCCTGTACTACT	0.512000													17	80	---	---	---	---	0	0	0.038395	0	0
DYNC2H1	79659	broad.mit.edu	37	11	102999693	102999693	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr11:102999693A>G	uc001pho.2	+	13	2056	c.1912A>G	c.(1912-1914)ATG>GTG	p.M638V	DYNC2H1_uc001phn.1_Missense_Mutation_p.M638V|DYNC2H1_uc009yxe.1_Missense_Mutation_p.M638V	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	638	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TCAGAGGCCAATGATGTTACA	0.249000													3	35	---	---	---	---	0	0	0.115264	0	0
SLC38A4	55089	broad.mit.edu	37	12	47172402	47172402	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr12:47172402C>T	uc001rpi.2	-	11	1274	c.875G>A	c.(874-876)CGC>CAC	p.R292H	SLC38A4_uc001rpj.2_Missense_Mutation_p.R292H	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	292	Extracellular (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TGCAGGATTGCGGTGGGTGTA	0.458000													7	72	---	---	---	---	0	0	0.029380	0	0
CPSF6	11052	broad.mit.edu	37	12	69651614	69651614	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr12:69651614C>T	uc001sut.3	+	5	733	c.623C>T	c.(622-624)CCA>CTA	p.P208L	CPSF6_uc001suu.3_Missense_Mutation_p.P208L|CPSF6_uc010stk.1_5'Flank	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	208	Pro-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			GGCCGTTTTCCAGGGGCTGTT	0.542000													14	101	---	---	---	---	0	0	0.119110	0	0
MTMR15	22909	broad.mit.edu	37	15	31202968	31202968	+	Silent	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr15:31202968C>T	uc001zff.2	+	4	1818	c.1527C>T	c.(1525-1527)GTC>GTT	p.V509V	MTMR15_uc001zfc.3_Silent_p.V509V|MTMR15_uc010azw.2_Silent_p.V509V|MTMR15_uc001zfd.3_Silent_p.V509V|MTMR15_uc001zfe.2_Silent_p.V114V	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	509					double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		AGCGTTCAGTCTGCACTTGGG	0.418000								Direct_reversal_of_damage|Editing_and_processing_nucleases					9	32	---	---	---	---	0	0	0.047766	0	0
CHRM5	1133	broad.mit.edu	37	15	34355791	34355791	+	Silent	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr15:34355791C>T	uc001zhk.1	+	3	1543	c.873C>T	c.(871-873)AGC>AGT	p.S291S	CHRM5_uc001zhl.1_Silent_p.S291S	NM_012125	NP_036257	P08912	ACM5_HUMAN	cholinergic receptor, muscarinic 5	291	Cytoplasmic (By similarity).				cell proliferation|inhibition of adenylate cyclase activity by muscarinic acetylcholine receptor signaling pathway	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;1.76e-08)		all cancers(64;4.82e-17)|GBM - Glioblastoma multiforme(113;2.58e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0262)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)	CTGGCCCAAGCGCCAATTGGG	0.632000													6	65	---	---	---	---	0	0	0.029380	0	0
DNAJC17	55192	broad.mit.edu	37	15	41071505	41071505	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr15:41071505C>A	uc001zms.1	-	4	222	c.211G>T	c.(211-213)GCA>TCA	p.A71S	DNAJC17_uc010bbz.1_RNA|DNAJC17_uc010bca.1_RNA|DNAJC17_uc010bcb.1_RNA	NM_018163	NP_060633	Q9NVM6	DJC17_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 17	71	J.				protein folding		heat shock protein binding|nucleotide binding|RNA binding|unfolded protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;9.68e-12)|Lung NSC(122;3.19e-09)|all_lung(180;6.45e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		TTGTCATATGCAGCCTGGCAG	0.542000													7	60	---	---	---	---	0.00307968	0.00369561	0.038147	1	0
PCSK6	5046	broad.mit.edu	37	15	101972253	101972253	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr15:101972253C>T	uc002bwy.2	-	4	769	c.455G>A	c.(454-456)CGA>CAA	p.R152Q	PCSK6_uc010bpd.2_Missense_Mutation_p.R22Q|PCSK6_uc010bpe.2_Missense_Mutation_p.R152Q|PCSK6_uc002bxa.2_Missense_Mutation_p.R152Q|PCSK6_uc002bxb.2_Missense_Mutation_p.R152Q|PCSK6_uc002bxc.1_Missense_Mutation_p.R152Q|PCSK6_uc002bxd.1_Missense_Mutation_p.R152Q|PCSK6_uc002bxe.2_Missense_Mutation_p.R152Q|PCSK6_uc002bxg.1_Missense_Mutation_p.R152Q	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	152	Catalytic.				glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CGGGTCACTTCGCACCTGTCT	0.483000													3	14	---	---	---	---	0	0	0.115264	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39280056	39280056	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr17:39280056G>C	uc002hwa.2	-	1	364	c.319C>G	c.(319-321)CAG>GAG	p.Q107E		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	107	31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].|19.		Missing (in allele KAP4.12-v1).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			CAGGTGGTCTGACAGCAGCTG	0.418000													9	71	---	---	---	---	0	0	0.047766	0	0
CIDEA	1149	broad.mit.edu	37	18	12274153	12274153	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr18:12274153T>A	uc002kqt.3	+	4	457	c.392T>A	c.(391-393)TTC>TAC	p.F131Y	CIDEA_uc002kqu.3_Missense_Mutation_p.F165Y|CIDEA_uc010dlc.2_RNA	NM_001279	NP_001270	O60543	CIDEA_HUMAN	cell death-inducing DFFA-like effector a isoform	131					DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change|lipid metabolic process|lipid storage|negative regulation of apoptosis|negative regulation of cytokine secretion|negative regulation of lipid catabolic process|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of sequestering of triglyceride|temperature homeostasis	mitochondrial envelope|nucleus	protein homodimerization activity			ovary(1)|central_nervous_system(1)	2						AGAGTCACCTTCGACTTGTAC	0.597000													11	65	---	---	---	---	0	0	0.080935	0	0
SIX5	147912	broad.mit.edu	37	19	46270388	46270388	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr19:46270388C>G	uc002pdb.2	-	2	1224	c.829G>C	c.(829-831)GAG>CAG	p.E277Q	SIX5_uc002pdc.2_Intron	NM_175875	NP_787071	Q8N196	SIX5_HUMAN	SIX homeobox 5	277						cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00783)|GBM - Glioblastoma multiforme(486;0.0802)|Epithelial(262;0.235)		GACTCGTCCTCAGTCGTGGGA	0.677000													5	8	---	---	---	---	0	0	0.021553	0	0
HAS1	3036	broad.mit.edu	37	19	52217155	52217155	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr19:52217155C>T	uc002pxo.1	-	5	1297	c.1262G>A	c.(1261-1263)CGT>CAT	p.R421H	HAS1_uc010epc.1_Missense_Mutation_p.R21H|HAS1_uc010epd.1_3'UTR|HAS1_uc002pxn.1_Missense_Mutation_p.R428H|HAS1_uc002pxp.1_Missense_Mutation_p.R420H	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	421	Extracellular (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GTAGAACAGACGCAGCACAGT	0.701000													13	15	---	---	---	---	0	0	0.119110	0	0
DNMT3A	1788	broad.mit.edu	37	2	25469564	25469564	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr2:25469564G>A	uc002rgc.2	-	10	1461	c.1204C>T	c.(1204-1206)CAG>TAG	p.Q402*	DNMT3A_uc002rgd.2_Nonsense_Mutation_p.Q402*|DNMT3A_uc010eyi.2_RNA|DNMT3A_uc002rgb.2_Nonsense_Mutation_p.Q213*	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	402	Interaction with DNMT1 and DNMT3B.				regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCTTGTTCTGCACCTCCACG	0.637000			Mis|F|N|S		AML								5	102	---	---	---	---	0	0	0.014758	0	0
C20orf160	140706	broad.mit.edu	37	20	30602787	30602787	+	Silent	SNP	G	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr20:30602787G>A	uc002wxf.2	+	2	124	c.111G>A	c.(109-111)CGG>CGA	p.R37R		NM_080625	NP_542192	Q9NUG4	CT160_HUMAN	hypothetical protein LOC140706	37										central_nervous_system(3)|ovary(1)	4						TGAGCCGCCGGCCCCTGCACT	0.632000													5	80	---	---	---	---	0	0	0.021553	0	0
TMF1	7110	broad.mit.edu	37	3	69088082	69088082	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr3:69088082C>G	uc003dnn.2	-	7	2153	c.1906G>C	c.(1906-1908)GAG>CAG	p.E636Q	TMF1_uc011bfx.1_Missense_Mutation_p.E639Q	NM_007114	NP_009045	P82094	TMF1_HUMAN	TATA element modulatory factor 1	636	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity				0		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		AGATCTTTCTCTTGGCGTTCT	0.373000													4	40	---	---	---	---	0	0	0.009096	0	0
KIAA1530	57654	broad.mit.edu	37	4	1347109	1347109	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr4:1347109C>G	uc003gde.3	+	5	1289	c.842C>G	c.(841-843)TCA>TGA	p.S281*		NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	281											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			GGTGACCCCTCAGATGAGGAC	0.662000													4	18	---	---	---	---	0	0	0.009096	0	0
KIAA0232	9778	broad.mit.edu	37	4	6826286	6826286	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr4:6826286T>G	uc003gjr.3	+	3	569	c.106T>G	c.(106-108)TTG>GTG	p.L36V	KIAA0232_uc003gjq.3_Missense_Mutation_p.L36V	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	36							ATP binding			ovary(2)	2						GCTTCATGCTTTGGGTCCAGT	0.488000													4	101	---	---	---	---	0	0	0.009096	0	0
FASTKD3	79072	broad.mit.edu	37	5	7868025	7868025	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr5:7868025G>A	uc003jeb.2	-	2	309	c.172C>T	c.(172-174)CAT>TAT	p.H58Y	FASTKD3_uc011cmp.1_Intron|FASTKD3_uc003jec.2_Intron|MTRR_uc010itn.1_5'Flank|MTRR_uc003jee.3_5'Flank|MTRR_uc003jed.2_5'Flank|MTRR_uc003jef.3_5'Flank|MTRR_uc003jeg.3_5'Flank|MTRR_uc010ito.2_5'Flank	NM_024091	NP_076996	Q14CZ7	FAKD3_HUMAN	FAST kinase domains 3	58					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(2)|breast(1)|pancreas(1)	4						TGGGCATGATGGAATTTGACC	0.433000													12	51	---	---	---	---	0	0	0.093190	0	0
HOMER1	9456	broad.mit.edu	37	5	78752789	78752789	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr5:78752789T>A	uc003kfy.2	-	2	1161	c.58A>T	c.(58-60)ACA>TCA	p.T20S	HOMER1_uc010jab.2_Missense_Mutation_p.T20S|HOMER1_uc010jac.2_Missense_Mutation_p.T20S|HOMER1_uc010jad.2_Intron	NM_004272	NP_004263	Q86YM7	HOME1_HUMAN	homer 1	20	WH1.				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic density|postsynaptic membrane					0		Lung NSC(167;0.00131)|all_lung(232;0.00151)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.87e-44)|Epithelial(54;7.07e-41)|all cancers(79;5.5e-36)		TTCTTCTTTGTGTTTGGGTCA	0.423000													4	118	---	---	---	---	0	0	0.014758	0	0
DMXL1	1657	broad.mit.edu	37	5	118506950	118506950	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr5:118506950T>G	uc003ksd.2	+	24	6645	c.6464T>G	c.(6463-6465)ATT>AGT	p.I2155S	DMXL1_uc010jcl.1_Missense_Mutation_p.I2155S	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	2155										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		ATGGAATTGATTTTGCTTTTG	0.353000													4	33	---	---	---	---	0	0	0.009096	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181292	140181292	+	Silent	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr5:140181292C>T	uc003lhf.2	+	1	510	c.510C>T	c.(508-510)TAC>TAT	p.Y170Y	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.Y170Y	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	170	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTGACTTACAGTCTTGATT	0.393000													6	68	---	---	---	---	0	0	0.021553	0	0
PCDHGA12	26025	broad.mit.edu	37	5	140812302	140812302	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr5:140812302C>G	uc003lkt.1	+	1	2145	c.1976C>G	c.(1975-1977)ACG>AGG	p.T659R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_Missense_Mutation_p.T659R	NM_003735	NP_003726	O60330	PCDGC_HUMAN	protocadherin gamma subfamily A, 12 isoform 1	659	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCACTGTCACGCTCACCGTG	0.667000													13	104	---	---	---	---	0	0	0.093190	0	0
HIST1H2AH	85235	broad.mit.edu	37	6	27114964	27114964	+	Silent	SNP	T	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr6:27114964T>G	uc003niz.2	+	1	57	c.57T>G	c.(55-57)TCT>TCG	p.S19S	HIST1H2BK_uc003nix.1_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080596	NP_542163	Q96KK5	H2A1H_HUMAN	histone cluster 1, H2ah	19					nucleosome assembly	nucleosome|nucleus	DNA binding				0						AGACCCGCTCTTCTCGGGCTG	0.622000													8	70	---	---	---	---	0	0	0.038147	0	0
TBL2	26608	broad.mit.edu	37	7	72985120	72985120	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr7:72985120A>C	uc003tyh.2	-	7	1195	c.1061T>G	c.(1060-1062)ATT>AGT	p.I354S	TBL2_uc011kex.1_Missense_Mutation_p.I318S|TBL2_uc010lbg.2_Missense_Mutation_p.I259S|TBL2_uc003tyi.2_Missense_Mutation_p.I189S|TBL2_uc011key.1_Missense_Mutation_p.I225S|TBL2_uc010lbh.2_Missense_Mutation_p.I259S	NM_012453	NP_036585	Q9Y4P3	TBL2_HUMAN	transducin (beta)-like 2	354	WD 6.										0		Lung NSC(55;0.0659)|all_lung(88;0.152)				GTAGAGATGAATACTACTGCC	0.622000													15	83	---	---	---	---	0	0	0.146539	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				28	46	---	---	---	---	0	0	0.144211	0	0
DLC1	10395	broad.mit.edu	37	8	12956022	12956022	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr8:12956022A>G	uc003wwm.2	-	10	3497	c.3053T>C	c.(3052-3054)CTA>CCA	p.L1018P	DLC1_uc003wwk.1_Missense_Mutation_p.L581P|DLC1_uc003wwl.1_Missense_Mutation_p.L615P|DLC1_uc011kxx.1_Missense_Mutation_p.L507P	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	1018					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GTTAATCTGTAGTGATACAGA	0.502000													4	53	---	---	---	---	0	0	0.009096	0	0
POLR3D	661	broad.mit.edu	37	8	22107993	22107993	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr8:22107993C>T	uc003xbl.2	+	9	1242	c.1159C>T	c.(1159-1161)CCT>TCT	p.P387S	POLR3D_uc003xbm.2_Missense_Mutation_p.P387S|POLR3D_uc011kze.1_RNA	NM_001722	NP_001713	P05423	RPC4_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	387					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity				0				Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		TGTATGTTCCCCTGATTTTGA	0.547000													5	83	---	---	---	---	0	0	0.014758	0	0
VPS13B	157680	broad.mit.edu	37	8	100832176	100832176	+	Silent	SNP	C	T	T			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr8:100832176C>T	uc003yiv.2	+	49	9006	c.8895C>T	c.(8893-8895)AGC>AGT	p.S2965S	VPS13B_uc003yiw.2_Silent_p.S2940S	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2965					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AGTGGGATAGCCCAATGCGAG	0.393000													19	48	---	---	---	---	0	0	0.043863	0	0
OXR1	55074	broad.mit.edu	37	8	107722934	107722934	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr8:107722934T>C	uc011lht.1	+	9	1811	c.1712T>C	c.(1711-1713)TTT>TCT	p.F571S	OXR1_uc003ymf.2_Missense_Mutation_p.F570S|OXR1_uc011lhu.1_Missense_Mutation_p.F563S|OXR1_uc010mcg.2_Intron|OXR1_uc010mch.2_Missense_Mutation_p.F268S	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	571					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			AGGAAAACGTTTGTATCTCAA	0.378000													5	40	---	---	---	---	0	0	0.014758	0	0
TRPS1	7227	broad.mit.edu	37	8	116599646	116599646	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr8:116599646T>C	uc003ynz.2	-	4	2702	c.2243A>G	c.(2242-2244)AAT>AGT	p.N748S	TRPS1_uc011lhy.1_Missense_Mutation_p.N752S|TRPS1_uc003yny.2_Missense_Mutation_p.N761S|TRPS1_uc010mcy.2_Missense_Mutation_p.N748S	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	748	Mediates interaction with GLI3.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			AGTTAGCAGATTGTAGACCCT	0.498000									Langer-Giedion_syndrome				8	162	---	---	---	---	0	0	0.047766	0	0
BAI1	575	broad.mit.edu	37	8	143623678	143623678	+	Silent	SNP	G	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr8:143623678G>A	uc003ywm.2	+	27	4266	c.4083G>A	c.(4081-4083)GAG>GAA	p.E1361E		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1361	Cytoplasmic (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					AGCCCAAGGAGGAGCCCAAGT	0.607000													4	30	---	---	---	---	0	0	0.009096	0	0
TSPYL2	64061	broad.mit.edu	37	X	53114196	53114196	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chrX:53114196G>A	uc004drw.2	+	4	1190	c.1058G>A	c.(1057-1059)CGT>CAT	p.R353H	TSPYL2_uc004drv.2_3'UTR|TSPYL2_uc004drx.1_5'UTR	NM_022117	NP_071400	Q9H2G4	TSYL2_HUMAN	TSPY-like 2	353					cell cycle|chromatin modification|negative regulation of cell cycle|negative regulation of cell growth|negative regulation of DNA replication|nucleosome assembly|regulation of protein kinase activity|regulation of signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|rDNA binding				0						CCCCAGGCCCGTCGTCACGGG	0.607000													9	51	---	---	---	---	0	0	0.047766	0	0
Unknown	0	broad.mit.edu	37	10	42385261	42385261	+	IGR	DEL	A	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr10:42385261delA								None (None upstream) : LOC441666 (442054 downstream)																							aatggaatcgaatggaatcac	0.000													7	1848	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400586	42400586	+	IGR	DEL	A	-	-	rs74207080		TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr10:42400586delA								None (None upstream) : LOC441666 (426729 downstream)																							atcttcgtataaaaactagac	0.000													10	1224	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42529391	42529391	+	IGR	DEL	G	-	-	rs71210893		TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr10:42529391delG								None (None upstream) : LOC441666 (297924 downstream)																							attatatgaagaaatcccgtt	0.000													12	831	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42597159	42597159	+	IGR	DEL	T	-	-	rs149908177		TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr10:42597159delT								None (None upstream) : LOC441666 (230156 downstream)																							ttgaacggaatcgaatggaat	0.035													21	977	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600053	42600053	+	IGR	DEL	T	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr10:42600053delT								None (None upstream) : LOC441666 (227262 downstream)																							ttgaacggaattgaatggaat	0.000													12	362	---	---	---	---					
HMGB1	3146	broad.mit.edu	37	13	31037690	31037690	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr13:31037690delT	uc001usw.2	-	2	312	c.128delA	c.(127-129)AAGfs	p.K43fs	HMGB1_uc001usz.2_Frame_Shift_Del_p.K43fs|HMGB1_uc001usv.2_Frame_Shift_Del_p.K43fs|HMGB1_uc001usx.2_Frame_Shift_Del_p.K43fs|HMGB1_uc001usy.2_Frame_Shift_Del_p.R28fs|HMGB1_uc001uta.1_Frame_Shift_Del_p.K43fs	NM_002128	NP_002119	P09429	HMGB1_HUMAN	high-mobility group box 1	43	HMG box 1.				base-excision repair, DNA ligation|dendritic cell chemotaxis|DNA fragmentation involved in apoptotic nuclear change|DNA topological change|inflammatory response to antigenic stimulus|innate immune response|myeloid dendritic cell activation|negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|neuron projection development|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of DNA binding|positive regulation of transcription from RNA polymerase II promoter|V(D)J recombination	cell surface|condensed chromosome|extracellular space|nucleolus|nucleoplasm	chemoattractant activity|cytokine activity|damaged DNA binding|DNA bending activity|double-stranded DNA binding|RAGE receptor binding|repressing transcription factor binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			ovary(1)	1		Lung SC(185;0.0257)		all cancers(112;0.072)|OV - Ovarian serous cystadenocarcinoma(117;0.177)|Lung(94;0.216)|GBM - Glioblastoma multiforme(144;0.232)		TGAGCACTTCTTAGAAAACTC	0.403													12	116	---	---	---	---					
TBC1D2B	23102	broad.mit.edu	37	15	78316614	78316614	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr15:78316614delC	uc002bcy.3	-	6	1354	c.1354delG	c.(1354-1356)GAGfs	p.E452fs	TBC1D2B_uc010bla.2_Frame_Shift_Del_p.E452fs	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	452	Potential.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						ATGATGACCTCGTCCTTGGCT	0.612													7	49	---	---	---	---					
IGF1R	3480	broad.mit.edu	37	15	99467892	99467894	+	In_Frame_Del	DEL	TTC	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr15:99467892_99467894delTTC	uc002bul.2	+	13	2811_2813	c.2761_2763delTTC	c.(2761-2763)TTCdel	p.F922del	IGF1R_uc010bon.2_In_Frame_Del_p.F922del|IGF1R_uc010boo.1_RNA	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	922	Extracellular (Potential).|Fibronectin type-III 3.				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	AGATCCTGTGTTCTTCTATGTCC	0.542													10	49	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46403697	46403698	+	IGR	INS	-	G	G	rs142975115		TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr16:46403697_46403698insG								None (None upstream) : ANKRD26P1 (99551 downstream)																							tttcattcgatgatgattccat	0.000													7	637	---	---	---	---					
ARRDC5	645432	broad.mit.edu	37	19	4903031	4903032	+	5'Flank	INS	-	TCACTGGTTCTTTT	TCACTGGTTCTTTT	rs144459964	by1000genomes	TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr19:4903031_4903032insTCACTGGTTCTTTT	uc002mbm.2	-							NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5						signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		ACCTGTAGTCCTCACTGGttct	0.302													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732021	27732021	+	IGR	DEL	T	-	-	rs4115062		TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr19:27732021delT								None (None upstream) : LOC148189 (549381 downstream)																							ttcagacctctttgaggcctt	0.000													7	2520	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732215	27732216	+	IGR	INS	-	C	C	rs74197760		TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr19:27732215_27732216insC								None (None upstream) : LOC148189 (549186 downstream)																							agaaaaggaaatatcttcgtat	0.000													20	1898	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736410	27736410	+	IGR	DEL	A	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr19:27736410delA								None (None upstream) : LOC148189 (544992 downstream)																							taaagtctgcaagtggatatt	0.000													17	482	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	92296752	92296753	+	IGR	INS	-	C	C			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr2:92296752_92296753insC								FKSG73 (166258 upstream) : None (None downstream)																							atgtcagaaatttttcatgatg	0.000													9	67	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133020743	133020744	+	IGR	INS	-	T	T	rs137914230		TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr2:133020743_133020744insT								NCRNA00164 (5201 upstream) : GPR39 (153403 downstream)																							TTAGATAGCTCTTTATTGTCAT	0.327													3	4	---	---	---	---					
PIK3CA	5290	broad.mit.edu	37	3	178916938	178916940	+	In_Frame_Del	DEL	GAA	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr3:178916938_178916940delGAA	uc003fjk.2	+	2	482_484	c.325_327delGAA	c.(325-327)GAAdel	p.E110del		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	110					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E109del(2)|p.G106_R108del(1)|p.E110K(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AGGCAACCGTGAAGAAAAGATCC	0.340		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			10	68	---	---	---	---					
KCNN2	3781	broad.mit.edu	37	5	113698631	113698632	+	In_Frame_Ins	INS	-	GCC	GCC	rs151038013	by1000genomes	TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr5:113698631_113698632insGCC	uc003kqo.2	+	1	616_617	c.159_160insGCC	c.(157-162)insGCC	p.58_59insA		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	58_59						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		CTGCAGCCGCTGCCGCCGCCGC	0.658													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58776848	58776848	+	IGR	DEL	T	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr6:58776848delT								GUSBL2 (489124 upstream) : None (None downstream)																							tgagacaccgtttttgtagaa	0.000													9	637	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61969534	61969534	+	IGR	DEL	A	-	-	rs56839084		TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr7:61969534delA								None (None upstream) : LOC643955 (782138 downstream)																							taataaccagacagaatcatt	0.000													11	1643	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	7478408	7478408	+	IGR	DEL	A	-	-			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chr9:7478408delA								KDM4C (302761 upstream) : C9orf123 (318085 downstream)																							agttactcttaataataaaca	0.219													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	11866	11867	+	RNA	INS	-	C	C			TCGA-EL-A3CR-01A-12D-A202-08	TCGA-EL-A3CR-10A-01D-A202-08									Somatic	Phase_I	Capture				Illumina GAIIx	1389f11b-6b68-4227-990a-5e6fcf476ebb	3381e87b-fd31-4d66-b6f9-cc7627de79b5	g.chrM:11866_11867insC	uc004cov.3	+	1		c.1289_1290insC			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		AACCTCGCCTTACCCCCCACTA	0.455													26	205	---	---	---	---					
