Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PALMD	54873	broad.mit.edu	37	1	100154340	100154340	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:100154340C>T	uc001dsg.2	+	7	967	c.524C>T	c.(523-525)GCC>GTC	p.A175V	PALMD_uc001dsf.2_Missense_Mutation_p.A175V	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	175					regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		GCTTTATATGCCATGGAAATT	0.299000													18	49	---	---	---	---	0	0	0.010504	0	0
AKNAD1	254268	broad.mit.edu	37	1	109394761	109394761	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:109394761T>C	uc001dwa.2	-	2	795	c.526A>G	c.(526-528)AGG>GGG	p.R176G	AKNAD1_uc010ovb.1_Intron|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	176										ovary(3)	3						TCACCATCCCTTTTCGGGTTG	0.423000													3	109	---	---	---	---	0	0	0.009096	0	0
PIAS3	10401	broad.mit.edu	37	1	145578441	145578441	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:145578441A>G	uc001eoc.1	+	2	495	c.404A>G	c.(403-405)TAT>TGT	p.Y135C	NBPF10_uc001emp.3_Intron|PIAS3_uc010oyy.1_Missense_Mutation_p.Y126C|PIAS3_uc001eod.1_5'Flank	NM_006099	NP_006090	Q9Y6X2	PIAS3_HUMAN	protein inhibitor of activated STAT, 3	135	PINIT.				positive regulation of protein sumoylation|protein sumoylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck	enzyme binding|nucleic acid binding|protein C-terminus binding|zinc ion binding			ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TTGCCCTTCTATGAAGTCTAT	0.582000													19	219	---	---	---	---	0	0	0.006320	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155932417	155932417	+	Silent	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:155932417G>A	uc001fmt.2	-	9	1186	c.1068C>T	c.(1066-1068)TAC>TAT	p.Y356Y	ARHGEF2_uc001fmr.2_Silent_p.Y328Y|ARHGEF2_uc001fms.2_Silent_p.Y355Y|ARHGEF2_uc001fmu.2_Silent_p.Y400Y|ARHGEF2_uc010pgt.1_Silent_p.Y329Y|ARHGEF2_uc010pgu.1_Silent_p.Y401Y	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	356	DH.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					TGTCTCGGGCGTACAGCTCCT	0.557000													4	128	---	---	---	---	0	0	0.014758	0	0
ATP1A4	480	broad.mit.edu	37	1	160124992	160124992	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:160124992C>T	uc001fve.3	+	3	844	c.365C>T	c.(364-366)GCC>GTC	p.A122V	ATP1A4_uc001fvf.3_RNA	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	122	Extracellular (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TGCTTTGTGGCCTACAGCATC	0.517000													3	53	---	---	---	---	0	0	0.004672	0	0
OLFML2B	25903	broad.mit.edu	37	1	161953593	161953593	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:161953593C>T	uc001gbu.2	-	8	2549	c.2125G>A	c.(2125-2127)GTC>ATC	p.V709I	OLFML2B_uc001gbt.2_Missense_Mutation_p.V192I|OLFML2B_uc010pkq.1_Missense_Mutation_p.V710I	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	709	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			AGCCTGGGGACGATCTGTGTG	0.547000													7	565	---	---	---	---	0	0	0.003080	0	0
OBSCN	84033	broad.mit.edu	37	1	228461984	228461984	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:228461984G>A	uc009xez.1	+	19	5566	c.5522G>A	c.(5521-5523)TGG>TAG	p.W1841*	OBSCN_uc001hsn.2_Nonsense_Mutation_p.W1841*	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1841	Ig-like 18.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GAGGTGGTGTGGCGCTGCGGC	0.692000													4	169	---	---	---	---	0	0	0.021553	0	0
PHOX2A	401	broad.mit.edu	37	11	71950915	71950915	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr11:71950915C>T	uc001osh.3	-	3	905	c.733G>A	c.(733-735)GCG>ACG	p.A245T		NM_005169	NP_005160	O14813	PHX2A_HUMAN	paired-like homeobox 2a	245	Poly-Gly.				noradrenergic neuron differentiation|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCGCTCCCGCGCCAGGCCCG	0.771000													3	8	---	---	---	---	0	0	0.004672	0	0
RERGL	79785	broad.mit.edu	37	12	18237559	18237559	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr12:18237559C>T	uc001rdq.2	-	5	421	c.227G>A	c.(226-228)TGG>TAG	p.W76*	RERGL_uc001rdr.2_Nonsense_Mutation_p.W75*	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	76	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						CCCATCTGCCCAGTGAAGCTC	0.398000													55	93	---	---	---	---	0	0	0.014410	0	0
AQP5	362	broad.mit.edu	37	12	50357924	50357924	+	Missense_Mutation	SNP	C	T	T	rs117761535	byFrequency	TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr12:50357924C>T	uc001rvo.2	+	3	1100	c.578C>T	c.(577-579)GCG>GTG	p.A193V		NM_001651	NP_001642	P55064	AQP5_HUMAN	aquaporin 5	193	Extracellular (Potential).				carbon dioxide transport|excretion|odontogenesis|pancreatic juice secretion	apical plasma membrane|integral to plasma membrane	protein binding|water channel activity				0						TTTGGCCCTGCGGTGGTCATG	0.612000													44	91	---	---	---	---	0	0	0.014410	0	0
SBNO1	55206	broad.mit.edu	37	12	123805012	123805012	+	Silent	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr12:123805012G>A	uc010tap.1	-	18	2634	c.2634C>T	c.(2632-2634)ATC>ATT	p.I878I	SBNO1_uc010tao.1_Silent_p.I877I|SBNO1_uc010taq.1_Intron	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	878							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		CAAGTTCATCGATAAGTTCAT	0.438000													34	98	---	---	---	---	0	0	0.007835	0	0
THSD1	55901	broad.mit.edu	37	13	52971586	52971586	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr13:52971586C>T	uc001vgo.2	-	3	1347	c.802G>A	c.(802-804)GTC>ATC	p.V268I	THSD1_uc001vgp.2_Missense_Mutation_p.V268I|THSD1_uc010tgz.1_Intron|THSD1_uc010aea.2_Intron	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	268	Extracellular (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		ACTCCTTGGACGAAGGTGCAT	0.562000													30	78	---	---	---	---	0	0	0.015359	0	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	G	G			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488000													3	46	---	---	---	---	0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	14	19857036	19857036	+	RNA	SNP	A	G	G			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr14:19857036A>G	uc001vvq.1	-	5		c.494T>C								Homo sapiens cDNA FLJ12852 fis, clone NT2RP2003445.																		CTGGATAATAAAGTTCATCTC	0.373000													4	94	---	---	---	---	0	0	0.009096	0	0
SEMA7A	8482	broad.mit.edu	37	15	74703138	74703138	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr15:74703138G>A	uc002axv.2	-	14	1868	c.1828C>T	c.(1828-1830)CAC>TAC	p.H610Y	SEMA7A_uc010ulk.1_Missense_Mutation_p.H445Y|SEMA7A_uc010ull.1_Missense_Mutation_p.H596Y	NM_003612	NP_003603	O75326	SEM7A_HUMAN	semaphorin 7A isoform 1 preproprotein	610	Ig-like C2-type.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(1)|central_nervous_system(1)	2						CAGAAGTAGTGGCCGTACTGC	0.637000													27	44	---	---	---	---	0	0	0.009535	0	0
NLRC3	197358	broad.mit.edu	37	16	3614041	3614041	+	Silent	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr16:3614041C>T	uc010btn.2	-	5	1308	c.897G>A	c.(895-897)GAG>GAA	p.E299E		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	299	NACHT.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GGAACATCTGCTCCAAACACA	0.627000													5	78	---	---	---	---	0	0	0.021553	0	0
NFAT5	10725	broad.mit.edu	37	16	69727910	69727910	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr16:69727910A>T	uc002exm.1	+	12	5336	c.4128A>T	c.(4126-4128)TTA>TTT	p.L1376F	NFAT5_uc002exi.2_Missense_Mutation_p.L1300F|NFAT5_uc002exj.1_Missense_Mutation_p.L1300F|NFAT5_uc002exk.1_Missense_Mutation_p.L1300F|NFAT5_uc002exl.1_Missense_Mutation_p.L1394F|NFAT5_uc002exn.1_Missense_Mutation_p.L1393F|NFAT5_uc002exo.1_Intron	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	1376					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCTCTTCTTATCTCCAGCAT	0.453000													29	61	---	---	---	---	0	0	0.015359	0	0
Unknown	0	broad.mit.edu	37	17	45105705	45105705	+	RNA	SNP	A	G	G	rs147936028	by1000genomes	TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr17:45105705A>G	uc010wki.1	+	5		c.1307A>G								Homo sapiens cDNA FLJ42521 fis, clone BRACE3000973.																		GCCTGGCACGAAATGCAGTTT	0.303000													5	209	---	---	---	---	0	0	0.021553	0	0
UBE2O	63893	broad.mit.edu	37	17	74398184	74398184	+	Silent	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr17:74398184G>A	uc002jrm.3	-	5	776	c.711C>T	c.(709-711)GGC>GGT	p.G237G	UBE2O_uc002jrn.3_Silent_p.G237G|UBE2O_uc002jrl.3_5'Flank	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	237							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						AGAGCTTGGCGCCATCTTCCG	0.552000													3	47	---	---	---	---	0	0	0.009096	0	0
DMRTC2	63946	broad.mit.edu	37	19	42351650	42351650	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr19:42351650G>A	uc002ors.2	+	2	237	c.154G>A	c.(154-156)GCC>ACC	p.A52T	DMRTC2_uc002orr.1_5'UTR|DMRTC2_uc010xwe.1_Missense_Mutation_p.A52T	NM_001040283	NP_001035373	Q8IXT2	DMRTD_HUMAN	DMRT-like family C2	52	DM.				cell differentiation|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0						TGGTGTCACCGCCCATCTCAA	0.617000													4	117	---	---	---	---	0	0	0.021553	0	0
SYNGR4	23546	broad.mit.edu	37	19	48869181	48869181	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr19:48869181G>T	uc002piz.2	+	2	327	c.82G>T	c.(82-84)GTC>TTC	p.V28F	TMEM143_uc002piw.1_5'Flank|TMEM143_uc002pix.1_5'Flank|TMEM143_uc002piy.1_5'Flank|TMEM143_uc010xzn.1_5'Flank|TMEM143_uc010elw.1_5'Flank|TMEM143_uc010xzo.1_5'Flank|TMEM143_uc010xzp.1_5'Flank|TMEM143_uc010xzq.1_5'Flank	NM_012451	NP_036583	O95473	SNG4_HUMAN	synaptogyrin 4	28	MARVEL.|Helical; (Potential).					integral to membrane					0		all_epithelial(76;5.08e-07)|all_lung(116;5.76e-06)|Lung NSC(112;1.18e-05)|Prostate(7;0.0143)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.00017)|Epithelial(262;0.0138)|GBM - Glioblastoma multiforme(486;0.0146)		CATCACGCGGGTCTTCGAAGG	0.617000													41	52	---	---	---	---	1.48734e-19	1.75506e-19	0.013114	1	0
PPP2R1A	5518	broad.mit.edu	37	19	52719042	52719042	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr19:52719042C>T	uc002pyp.2	+	7	977	c.818C>T	c.(817-819)GCA>GTA	p.A273V	PPP2R1A_uc010ydk.1_Missense_Mutation_p.A218V|PPP2R1A_uc010epm.1_Missense_Mutation_p.A313V|PPP2R1A_uc002pyq.2_Missense_Mutation_p.A94V	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	273	HEAT 7.|PP2A subunit B binding.|Polyoma small and medium T antigens Binding.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		CTCCAGAAAGCAGTGGGGCCT	0.488000			Mis		clear cell ovarian carcinoma								29	69	---	---	---	---	0	0	0.008740	0	0
AFF3	3899	broad.mit.edu	37	2	100623626	100623626	+	Silent	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr2:100623626G>A	uc002tag.2	-	5	707	c.471C>T	c.(469-471)GAC>GAT	p.D157D	AFF3_uc002taf.2_Silent_p.D182D|AFF3_uc010fiq.1_Silent_p.D157D|AFF3_uc010yvr.1_Silent_p.D311D|AFF3_uc002tah.1_Silent_p.D182D|AFF3_uc010fir.1_Silent_p.D234D|AFF3_uc002tai.2_Silent_p.D79D	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	157					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TCTGTTGGCCGTCAGAGGGTG	0.498000													38	69	---	---	---	---	0	0	0.014410	0	0
FRG1B	284802	broad.mit.edu	37	20	29625947	29625947	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr20:29625947T>C	uc010ztl.1	+	2	133	c.101T>C	c.(100-102)ATT>ACT	p.I34T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TCAGATGCAATTGGACCAAGA	0.343000													4	101	---	---	---	---	0	0	0.003080	0	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr20:29628243T>C	uc010ztl.1	+	3	187	c.155T>C	c.(154-156)TTG>TCG	p.L52S	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.L4S					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGGCTTTGTTGGCCTCAAAT	0.353000													5	230	---	---	---	---	0	0	0.006214	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr20:29628245G>A	uc010ztl.1	+	3	189	c.157G>A	c.(157-159)GCC>ACC	p.A53T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTTTGTTGGCCTCAAATAG	0.353000													6	230	---	---	---	---	0	0	0.006214	0	0
RIMBP3	85376	broad.mit.edu	37	22	20457793	20457793	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr22:20457793C>A	uc002zsd.3	-	1	3994	c.3509G>T	c.(3508-3510)TGT>TTT	p.C1170F		NM_015672	NP_056487			RIMS binding protein 3												0	Colorectal(54;0.0993)|Melanoma(16;0.165)		LUSC - Lung squamous cell carcinoma(15;0.0405)|Lung(15;0.224)			GGACTCACCACAGAGTGACAT	0.572000													4	13	---	---	---	---	0.000442599	0.000483581	0.006214	1	0
SLC22A14	9389	broad.mit.edu	37	3	38357110	38357110	+	Silent	SNP	G	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr3:38357110G>T	uc010hhc.1	+	9	1482	c.1440G>T	c.(1438-1440)ACG>ACT	p.T480T	SLC22A14_uc003cib.2_Silent_p.T480T|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	480	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		AATCCATGACGATCTTGGTGC	0.592000													74	133	---	---	---	---	7.2426e-40	8.72068e-40	0.014410	1	0
ACVR2B	93	broad.mit.edu	37	3	38523689	38523689	+	Missense_Mutation	SNP	G	C	C			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr3:38523689G>C	uc003cif.2	+	9	1099	c.1075G>C	c.(1075-1077)GTA>CTA	p.V359L	ACVR2B_uc003cig.2_Missense_Mutation_p.V150L	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	359	Cytoplasmic (Potential).|Protein kinase.				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		CCTCACATAGGTAGGCACGAG	0.562000													26	70	---	---	---	---	0	0	0.012213	0	0
UQCRC1	7384	broad.mit.edu	37	3	48637950	48637950	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr3:48637950T>A	uc003cub.1	-	10	1223	c.1178A>T	c.(1177-1179)AAC>ATC	p.N393I	UQCRC1_uc003cua.1_Missense_Mutation_p.N278I|UQCRC1_uc003cuc.1_Missense_Mutation_p.N394I|UQCRC1_uc003cud.1_Missense_Mutation_p.N392I	NM_003365	NP_003356	P31930	QCR1_HUMAN	ubiquinol-cytochrome c reductase core protein I	393					aerobic respiration|proteolysis		metalloendopeptidase activity|ubiquinol-cytochrome-c reductase activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)	Atovaquone(DB01117)	TCTGAGGATGTTTTTGCCCCG	0.567000													33	57	---	---	---	---	0	0	0.011902	0	0
KPNA1	3836	broad.mit.edu	37	3	122168506	122168506	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr3:122168506G>A	uc003efd.1	-	9	868	c.832C>T	c.(832-834)CTC>TTC	p.L278F	KPNA1_uc003efb.1_Missense_Mutation_p.L77F|KPNA1_uc003efc.1_Missense_Mutation_p.L77F|KPNA1_uc011bjr.1_Missense_Mutation_p.L77F|KPNA1_uc010hrh.2_Missense_Mutation_p.L77F|KPNA1_uc003efe.2_Missense_Mutation_p.L278F	NM_002264	NP_002255	P52294	IMA1_HUMAN	karyopherin alpha 1	278	Binding to RAG1.|ARM 5.				DNA fragmentation involved in apoptotic nuclear change|NLS-bearing substrate import into nucleus|regulation of DNA recombination|viral genome transport in host cell|viral infectious cycle	cytosol|nuclear pore|nucleoplasm	nuclear localization sequence binding|protein binding|protein transporter activity				0				GBM - Glioblastoma multiforme(114;0.0898)		AGATATGAGAGGGCCCAGCAG	0.433000													3	94	---	---	---	---	0	0	0.004672	0	0
YTHDC1	91746	broad.mit.edu	37	4	69197877	69197877	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr4:69197877T>C	uc003hdx.2	-	7	1419	c.1066A>G	c.(1066-1068)AGA>GGA	p.R356G	YTHDC1_uc003hdy.2_Missense_Mutation_p.R338G	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	356	YTH.									upper_aerodigestive_tract(1)|ovary(1)	2						AGGAAAAATCTTGCATCTTGA	0.343000													21	73	---	---	---	---	0	0	0.018920	0	0
TERT	7015	broad.mit.edu	37	5	1293592	1293592	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr5:1293592C>T	uc003jcb.1	-	2	1467	c.1409G>A	c.(1408-1410)CGC>CAC	p.R470H	TERT_uc003jca.1_Missense_Mutation_p.R470H|TERT_uc003jcc.1_Missense_Mutation_p.R470H|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	470	Required for oligomerization.|RNA-interacting domain 2.|QFP motif.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CACCAGCCGGCGCAGGCAGGC	0.687000									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				5	7	---	---	---	---	0	0	0.001984	0	0
IGF2R	3482	broad.mit.edu	37	6	160464296	160464296	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr6:160464296G>A	uc003qta.2	+	12	1745	c.1597G>A	c.(1597-1599)GAG>AAG	p.E533K		NM_000876	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor precursor	533	4.|Lumenal (Potential).				receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			ovary(3)	3		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		AGGGTGTCCCGAGGACGCGGC	0.493000													60	133	---	---	---	---	0	0	0.014410	0	0
C7orf25	79020	broad.mit.edu	37	7	42971806	42971806	+	Splice_Site	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr7:42971806G>A	uc010kxr.2	-	1	1	c.-929_splice	c.e1-1		PSMA2_uc003thy.2_Splice_Site|PSMA2_uc010kxt.2_Splice_Site|PSMA2_uc003thz.1_Splice_Site|MRPL32_uc003tia.2_5'Flank|MRPL32_uc003tib.2_5'Flank|MRPL32_uc003tic.2_5'Flank	NM_001099858	NP_001093328	Q9BPX7	CG025_HUMAN	hypothetical protein LOC79020 a											skin(1)	1						CACTGTGGCCGATTTCCTTTC	0.537000													22	33	---	---	---	---	0	0	0.010504	0	0
PTCD1	26024	broad.mit.edu	37	7	99032844	99032844	+	Nonsense_Mutation	SNP	G	A	A	rs138103080		TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr7:99032844G>A	uc003uqh.2	-	2	153	c.22C>T	c.(22-24)CGA>TGA	p.R8*	PTCD1_uc011kiw.1_Nonsense_Mutation_p.R57*	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	8										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			GCGAACAGTCGAGCGAGTCTC	0.567000													19	114	---	---	---	---	0	0	0.016522	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				39	66	---	---	---	---	0	0	0.014410	0	0
C7orf33	202865	broad.mit.edu	37	7	148288066	148288066	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr7:148288066C>A	uc003wew.2	+	1	410	c.49C>A	c.(49-51)CTT>ATT	p.L17I		NM_145304	NP_660347	Q8WU49	CG033_HUMAN	hypothetical protein LOC202865	17										central_nervous_system(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			TCCCTGGAGACTTCCAGGCCC	0.567000													24	65	---	---	---	---	9.90768e-06	1.12414e-05	0.024334	1	0
RBM12B	389677	broad.mit.edu	37	8	94747584	94747584	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr8:94747584G>A	uc003yfz.2	-	3	1248	c.1055C>T	c.(1054-1056)CCA>CTA	p.P352L		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	352	RRM 2.						nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			AATATGAACTGGACGATATTG	0.363000													18	42	---	---	---	---	0	0	0.007413	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070768	141070768	+	Silent	SNP	C	T	T	rs4609262	by1000genomes	TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr9:141070768C>T	uc004com.2	+	4	432	c.171C>T	c.(169-171)TGC>TGT	p.C57C	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GCTGTGACTGCCTGCAGGGTT	0.617000													3	22	---	---	---	---	0	0	0.021553	0	0
XIST	7503	broad.mit.edu	37	X	73071160	73071160	+	RNA	SNP	G	A	A			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chrX:73071160G>A	uc004ebm.1	-	1		c.1429C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AAAGCACACAGCAAAGACAAA	0.517000													3	59	---	---	---	---	0	0	0.004672	0	0
TMCO2	127391	broad.mit.edu	37	1	40713708	40713709	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:40713708_40713709delTC	uc001cfe.2	+	1	136_137	c.43_44delTC	c.(43-45)TCTfs	p.S15fs		NM_001008740	NP_001008740	Q7Z6W1	TMCO2_HUMAN	transmembrane and coiled-coil domains 2	15						integral to membrane				ovary(1)	1	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			CCTCTTAGAGTCTCTCTCTCTC	0.406													7	276	---	---	---	---					
SEMA6C	10500	broad.mit.edu	37	1	151105171	151105171	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr1:151105171delG	uc001ewu.2	-	19	2882	c.2582delC	c.(2581-2583)CCTfs	p.P861fs	SEMA6C_uc001ewv.2_Frame_Shift_Del_p.P893fs|SEMA6C_uc001eww.2_Frame_Shift_Del_p.P853fs|SEMA6C_uc010pcq.1_3'UTR	NM_030913	NP_112175	Q9H3T2	SEM6C_HUMAN	semaphorin Y precursor	861	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GAGCAGGGCAGGGGGGGCCCG	0.592													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	129948183	129948184	+	IGR	INS	-	C	C			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr10:129948183_129948184insC								MKI67 (23715 upstream) : None (None downstream)																							cccagcccgcgccccctgcccg	0.277													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	80650276	80650277	+	IGR	INS	-	CAAA	CAAA	rs147846753	by1000genomes	TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr12:80650276_80650277insCAAA								PPP1R12A (321041 upstream) : PTPRQ (187849 downstream)																							TTTCTTTACATcaaacaaacaa	0.322													4	5	---	---	---	---					
CLIP1	6249	broad.mit.edu	37	12	122812690	122812691	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr12:122812690_122812691insT	uc001ucg.1	-	16	3158_3159	c.3052_3053insA	c.(3052-3054)AGCfs	p.S1018fs	CLIP1_uc001uch.1_Frame_Shift_Ins_p.S1007fs|CLIP1_uc001uci.1_Frame_Shift_Ins_p.S972fs|CLIP1_uc001ucj.1_Frame_Shift_Ins_p.S593fs	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1018	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		CTGGTTGTGGCTTGTTTCCATT	0.505													7	158	---	---	---	---					
C14orf106	55320	broad.mit.edu	37	14	45716018	45716019	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr14:45716018_45716019insT	uc001wwf.2	-	2	930_931	c.471_472insA	c.(469-474)AAATTGfs	p.K157fs	C14orf106_uc010anh.2_RNA	NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	157_158					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						GTATGCTGCAATTTTTTTTTTT	0.356													7	76	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20556978	20556979	+	IGR	DEL	GC	-	-	rs8036331		TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr15:20556978_20556979delGC								None (None upstream) : GOLGA6L6 (180115 downstream)																							CATGGGGGGGGCGGTCCTGTCC	0.668													3	4	---	---	---	---					
SRP68	6730	broad.mit.edu	37	17	74057570	74057571	+	Splice_Site	INS	-	AA	AA			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr17:74057570_74057571insAA	uc002jqk.1	-	5	679	c.644_splice	c.e5+1	p.K215_splice	SRP68_uc010wsu.1_Splice_Site_p.K114_splice|SRP68_uc002jql.1_Splice_Site_p.K177_splice	NM_014230	NP_055045	Q9UHB9	SRP68_HUMAN	signal recognition particle 68kDa						response to drug	cytosol|endoplasmic reticulum|nucleolus|ribosome|signal recognition particle, endoplasmic reticulum targeting	RNA binding|signal recognition particle binding			ovary(1)	1						CTATAGGACTTACTTGCATTTG	0.411													17	44	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	75692939	75692939	+	IGR	DEL	C	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr17:75692939delC								SEPT9 (196263 upstream) : FLJ45079 (182170 downstream)																							cctctcccttctcctcctcct	0.363													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	12088089	12088089	+	IGR	DEL	C	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr18:12088089delC								IMPA2 (57213 upstream) : CIDEA (166229 downstream)																							accgtcctagccccagccctg	0.104													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	14208095	14208095	+	IGR	DEL	T	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr18:14208095delT								ZNF519 (75666 upstream) : LOC284233 (129327 downstream)																							ATTATGTATATTTTTTGAATC	0.333													10	109	---	---	---	---					
ARID3A	1820	broad.mit.edu	37	19	929631	929631	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr19:929631delC	uc002lql.2	+	2	393	c.103delC	c.(103-105)CCCfs	p.P35fs		NM_005224	NP_005215	Q99856	ARI3A_HUMAN	AT rich interactive domain 3A (BRIGHT- like)	35						cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCTGCTGCAccccccggccg	0.607													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	18526357	18526357	+	IGR	DEL	G	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr19:18526357delG								LRRC25 (17936 upstream) : SSBP4 (3864 downstream)																							ACAGTCTTGCGGGGGCAGTGC	0.463													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	26395908	26395909	+	5'Flank	INS	-	G	G			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr2:26395908_26395909insG	uc002rgw.1	+											SubName: Full=Putative uncharacterized protein FAM59B;																		gggcggggcccgggggcggggc	0.243													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	240715022	240715023	+	IGR	INS	-	T	T			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr2:240715022_240715023insT								HDAC4 (391676 upstream) : NDUFA10 (185135 downstream)																							CTGGCCCCTTCTCCCCACGGTA	0.238													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	36041074	36041075	+	IGR	DEL	TG	-	-	rs66502814		TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr20:36041074_36041075delTG								SRC (7255 upstream) : BLCAP (104745 downstream)																							agaatgtgcatgtgtgtgtgtg	0.337													3	5	---	---	---	---					
TOX2	84969	broad.mit.edu	37	20	42542027	42542028	+	5'Flank	DEL	TG	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr20:42542027_42542028delTG	uc010ggo.2	+						TOX2_uc002xle.3_5'Flank|TOX2_uc010ggp.2_5'Flank	NM_001098797	NP_001092267	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			cagaagagtatgtgtgtgtgtg	0.030													2	4	---	---	---	---					
C21orf70	85395	broad.mit.edu	37	21	46359940	46359941	+	5'Flank	INS	-	G	G			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr21:46359940_46359941insG	uc002zgl.2	+						C21orf67_uc011afm.1_5'Flank|C21orf67_uc002zgj.3_5'Flank|C21orf67_uc002zgk.3_5'Flank|C21orf70_uc002zgm.2_5'Flank	NM_058190	NP_478070	Q9NSI2	CU070_HUMAN	hypothetical protein LOC85395												0				Colorectal(79;0.248)		TTCCGGGAGGCGCTCCGCACGT	0.708													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	46744074	46744075	+	IGR	INS	-	A	A	rs143661612	by1000genomes	TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr21:46744074_46744075insA								LOC642852 (26806 upstream) : COL18A1 (81022 downstream)																							CACCCCCCGGCACCCACCATGA	0.673													3	3	---	---	---	---					
LEF1	51176	broad.mit.edu	37	4	109088756	109088756	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr4:109088756delG	uc003hyt.1	-	1	823	c.168delC	c.(166-168)TCCfs	p.S56fs	LEF1_uc011cfj.1_5'Flank|LEF1_uc011cfk.1_5'Flank|LEF1_uc003hyu.1_Frame_Shift_Del_p.S56fs|LEF1_uc003hyv.1_Frame_Shift_Del_p.S56fs|LEF1_uc010imb.1_RNA	NM_016269	NP_057353	Q9UJU2	LEF1_HUMAN	lymphoid enhancer-binding factor 1 isoform 1	56	CTNNB1-binding (By similarity).				canonical Wnt receptor signaling pathway|cell chemotaxis|cellular response to interleukin-4|epithelial to mesenchymal transition|histone H3 acetylation|histone H4 acetylation|negative regulation of apoptosis in bone marrow|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell-cell adhesion|negative regulation of DNA binding|negative regulation of estrogen receptor binding|negative regulation of interleukin-13 production|negative regulation of interleukin-4 production|negative regulation of interleukin-5 production|negative regulation of transcription, DNA-dependent|neutrophil differentiation|osteoblast differentiation|palate development|positive regulation by host of viral transcription|positive regulation of cell cycle process|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cell proliferation in bone marrow|positive regulation of cell-cell adhesion|positive regulation of epithelial to mesenchymal transition|positive regulation of granulocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|T-helper 1 cell differentiation	cytoplasm|protein-DNA complex|transcription factor complex	armadillo repeat domain binding|beta-catenin binding|C2H2 zinc finger domain binding|caspase inhibitor activity|DNA bending activity|enhancer binding|estrogen receptor activity|estrogen receptor binding|gamma-catenin binding|histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding			large_intestine(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000224)		CGTTCACCAAGGAAGACTTGA	0.577													7	225	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	168377981	168377983	+	IGR	DEL	GTG	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr4:168377981_168377983delGTG								SPOCK3 (222240 upstream) : ANXA10 (635724 downstream)																							gatggtggcagtggtggtggtgg	0.123													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	185536410	185536413	+	IGR	DEL	TTTG	-	-	rs146473442		TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr4:185536410_185536413delTTTG								IRF2 (140684 upstream) : CASP3 (12439 downstream)																							CAAAGCCGATtttgtttgtttgtt	0.260													5	8	---	---	---	---					
MTMR12	54545	broad.mit.edu	37	5	32243628	32243630	+	In_Frame_Del	DEL	TGA	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr5:32243628_32243630delTGA	uc003jhq.2	-	11	1267_1269	c.1097_1099delTCA	c.(1096-1101)ATCAGA>AGA	p.I366del	MTMR12_uc010iuk.2_In_Frame_Del_p.I366del|MTMR12_uc010iul.2_In_Frame_Del_p.I366del	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	366	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						TTGAAATACCTGATTATGTCAAG	0.315													19	95	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	173126021	173126022	+	IGR	DEL	CG	-	-	rs67218607		TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr5:173126021_173126022delCG								BOD1 (82355 upstream) : CPEB4 (189309 downstream)																							cacacacacacGCGCGTGCGCG	0.391													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	39924831	39924831	+	IGR	DEL	G	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr7:39924831delG								LOC349114 (90610 upstream) : CDK13 (65128 downstream)																							GGCTGGGGTAGGAGAGCAGGA	0.249													2	4	---	---	---	---					
LOC100132707	100132707	broad.mit.edu	37	7	154719071	154719073	+	5'Flank	DEL	AGG	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr7:154719071_154719073delAGG	uc003wln.2	+						LOC100132707_uc011kvr.1_5'Flank|LOC100132707_uc003wlo.2_5'Flank					Homo sapiens cDNA FLJ32047 fis, clone NTONG2001137.												0						gaggaggggcaggaggaggagga	0.187													2	4	---	---	---	---					
AP3M2	10947	broad.mit.edu	37	8	42015502	42015514	+	Frame_Shift_Del	DEL	TAGTTGTGGTTTA	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr8:42015502_42015514delTAGTTGTGGTTTA	uc003xop.2	+	4	608_620	c.317_329delTAGTTGTGGTTTA	c.(316-330)GTAGTTGTGGTTTATfs	p.V106fs	AP3M2_uc003xoo.2_Frame_Shift_Del_p.V106fs|AP3M2_uc010lxe.2_RNA|AP3M2_uc003xoq.1_5'UTR|AP3M2_uc003xor.1_Frame_Shift_Del_p.V106fs	NM_001134296	NP_001127768	P53677	AP3M2_HUMAN	adaptor-related protein complex 3, mu 2 subunit	106_110					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus					0	all_cancers(6;8.14e-25)|all_epithelial(6;2.41e-27)|all_lung(13;5.09e-13)|Lung NSC(13;8.38e-12)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|Colorectal(10;0.00165)|OV - Ovarian serous cystadenocarcinoma(14;0.00346)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)			AAAGACAATGTAGTTGTGGTTTATGAGGTATTG	0.376													17	196	---	---	---	---					
ATAD2	29028	broad.mit.edu	37	8	124368685	124368685	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr8:124368685delA	uc003yqh.3	-	13	1698	c.1590delT	c.(1588-1590)TTTfs	p.F530fs	ATAD2_uc011lii.1_Frame_Shift_Del_p.F321fs|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Frame_Shift_Del_p.F530fs	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	530					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			CAATTTCGTCAAAAAAAATAA	0.413													7	77	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	23850234	23850236	+	IGR	DEL	CCC	-	-	rs1775124	by1000genomes	TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr9:23850234_23850236delCCC								ELAVL2 (24171 upstream) : None (None downstream)																							accaccaccaccccccccgcccc	0.389													5	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68438697	68438697	+	IGR	DEL	T	-	-	rs139120646		TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chr9:68438697delT								FAM27B (644508 upstream) : MIR1299 (563542 downstream)																							AAAAATAAAATTGATATTACA	0.254													8	64	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	13128	13128	+	RNA	DEL	C	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chrM:13128delC	uc004cox.3	+	1		c.792delC			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		ATCCGCTTCCACCCCCTAGCA	0.517													56	2	---	---	---	---					
LOC442459	442459	broad.mit.edu	37	X	98975827	98975827	+	RNA	DEL	T	-	-			TCGA-EL-A3MZ-01A-11D-A21A-08	TCGA-EL-A3MZ-11A-11D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	47257d8b-b2d5-4c9d-81f9-0d0d9c3bb1f8	9082f100-7dd2-49d3-898f-d4d0ec6d6c73	g.chrX:98975827delT	uc011mrd.1	-	7		c.772delA				NR_024608				Homo sapiens DNA repair protein mRNA, complete cds.												0						CTGGTCAAGCTTTAGAATTTG	0.398													2	4	---	---	---	---					
