Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			62	104	---	---	---	---	0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	12	92018	92018	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr12:92018T>C	uc010sdi.1	-	2	320	c.292A>G	c.(292-294)AGT>GGT	p.S98G	uc010sdj.1_RNA					SubName: Full=DEAD/H box polypeptide 11 like 11;																		GACTCCACACTCTCCTGGGTT	0.592													4	17	---	---	---	---	0	0	0.000602	0	0
PRB2	653247	broad.mit.edu	37	12	11546273	11546273	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr12:11546273G>A	uc010shk.1	-	3	774	c.739C>T	c.(739-741)CCA>TCA	p.P247S		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CCTCCTTGTGGGGGTGGTCCT	0.617													110	174	---	---	---	---	0	0	0.014410	0	0
NEK8	284086	broad.mit.edu	37	17	27061954	27061954	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr17:27061954C>T	uc002hcp.2	+	3	418	c.418C>T	c.(418-420)CGC>TGC	p.R140C		NM_178170	NP_835464	Q86SG6	NEK8_HUMAN	NIMA-related kinase 8	140	Protein kinase.					cytoplasm|primary cilium	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)|pancreas(1)|liver(1)|skin(1)	6	Lung NSC(42;0.0158)					TGACAAACACCGCATGGTCGT	0.562													68	114	---	---	---	---	0	0	0.014410	0	0
TMEM49	81671	broad.mit.edu	37	17	57842412	57842412	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr17:57842412G>C	uc002ixu.3	+	6	768	c.495G>C	c.(493-495)CAG>CAC	p.Q165H	TMEM49_uc010wog.1_5'UTR|TMEM49_uc010woh.1_Intron|TMEM49_uc010woi.1_Missense_Mutation_p.Q68H|TMEM49_uc010woj.1_Missense_Mutation_p.Q31H	NM_030938	NP_112200	Q96GC9	VMP1_HUMAN	transmembrane protein 49	165	Extracellular (Potential).				autophagy|cell adhesion	endoplasmic reticulum|ER-Golgi intermediate compartment membrane|integral to membrane|plasma membrane|vacuolar membrane					0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;1.15e-09)|all cancers(12;1.15e-08)			ATCCTGATCAGATTATTTGTC	0.388													3	65	---	---	---	---	0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9084433	9084433	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr19:9084433G>T	uc002mkp.2	-	1	7586	c.7382C>A	c.(7381-7383)ACA>AAA	p.T2461K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2461	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCCGAGCTTGTCTCGACAGG	0.507													13	38	---	---	---	---	4.3838e-07	1.20555e-06	0.001855	1	0
ZNF155	7711	broad.mit.edu	37	19	44500960	44500960	+	Silent	SNP	G	A	A			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr19:44500960G>A	uc002oxy.1	+	5	1156	c.951G>A	c.(949-951)AGG>AGA	p.R317R	ZNF155_uc002oxz.1_Silent_p.R317R|ZNF155_uc010xwt.1_Silent_p.R328R	NM_003445	NP_003436	Q12901	ZN155_HUMAN	zinc finger protein 155	317	C2H2-type 6.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Prostate(69;0.0352)				AACCATTTAGGTGTGATACAT	0.413													5	104	---	---	---	---	0	0	0.000602	0	0
TMEM37	140738	broad.mit.edu	37	2	120194901	120194901	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr2:120194901T>C	uc002tly.2	+	2	492	c.458T>C	c.(457-459)GTC>GCC	p.V153A		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	153						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						AGGAACCAAGTCACACTCATC	0.552													7	363	---	---	---	---	0	0	0.004482	0	0
KIF1A	547	broad.mit.edu	37	2	241683392	241683392	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr2:241683392T>G	uc002vzy.2	-	31	3394	c.3248A>C	c.(3247-3249)CAC>CCC	p.H1083P	KIF1A_uc010fzk.2_Missense_Mutation_p.H1184P|KIF1A_uc002vzz.1_Missense_Mutation_p.H1184P	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1083					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		CGGGAACGGGTGCTGCTGGTA	0.602													9	177	---	---	---	---	0	0	0.004656	0	0
SIRPB1	10326	broad.mit.edu	37	20	1551539	1551539	+	Silent	SNP	C	T	T			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr20:1551539C>T	uc010gai.2	-	4	1095	c.996G>A	c.(994-996)GTG>GTA	p.V332V	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	332	Ig-like C1-type 2.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CATCATGCTCCACCTGACAGG	0.562													55	96	---	---	---	---	0	0	0.014410	0	0
DGCR8	54487	broad.mit.edu	37	22	20079439	20079439	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr22:20079439G>A	uc002zri.2	+	7	1902	c.1552G>A	c.(1552-1554)GAG>AAG	p.E518K	DGCR8_uc010grz.2_Missense_Mutation_p.E518K|DGCR8_uc002zrj.2_Missense_Mutation_p.E161K	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	518	Necessary for interaction with DROSHA.|Necessary for heme-binding and pri-miRNA processing.|DRBM 1.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					CATCCTGCACGAGTACATGCA	0.463													26	8	---	---	---	---	0	0	0.005443	0	0
LOC96610	96610	broad.mit.edu	37	22	22663087	22663087	+	RNA	SNP	A	G	G	rs1054158		TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr22:22663087A>G	uc011aim.1	+	29		c.1860A>G			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_RNA|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						GCTGCCACATAAGTTGTCCTT	0.303													3	9	---	---	---	---	0	0	0.004672	0	0
MCF2L2	23101	broad.mit.edu	37	3	183041038	183041038	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr3:183041038C>T	uc003fli.1	-	6	678	c.588G>A	c.(586-588)TGG>TGA	p.W196*	MCF2L2_uc003flj.1_Nonsense_Mutation_p.W196*|MCF2L2_uc003flp.1_Nonsense_Mutation_p.W231*	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	196					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			GGTGATTTACCCACTGACCGT	0.502													4	96	---	---	---	---	0	0	0.009096	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351126	40351126	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr4:40351126T>C	uc003gva.1	+	4	609	c.593T>C	c.(592-594)ATT>ACT	p.I198T		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	198	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	TCTGACTTCATTGAAGATGTG	0.517													6	191	---	---	---	---	0	0	0.001168	0	0
CXCL13	10563	broad.mit.edu	37	4	78532142	78532142	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr4:78532142A>T	uc003hkr.2	+	5	357	c.279A>T	c.(277-279)AAA>AAT	p.K93N		NM_006419	NP_006410	O43927	CXL13_HUMAN	chemokine (C-X-C motif) ligand 13 (B-cell	93					activation of Rap GTPase activity|B cell chemotaxis|cell-cell signaling|chronic inflammatory response|defense response to bacterium|elevation of cytosolic calcium ion concentration|endothelial cell chemotaxis to fibroblast growth factor|germinal center formation|lymphocyte chemotaxis across high endothelial venule|negative regulation of apoptosis|positive regulation of cell-cell adhesion mediated by integrin|positive regulation of integrin activation|positive regulation of T cell chemotaxis|regulation of angiogenesis|regulation of humoral immune response	extracellular space|soluble fraction	CCR10 chemokine receptor binding|chemokine activity|CXCR3 chemokine receptor binding|CXCR5 chemokine receptor binding|fibroblast growth factor 2 binding|heparin binding|protein heterodimerization activity|receptor agonist activity				0						TGCTTCACAGAAGAAGTTCTT	0.408													46	74	---	---	---	---	0	0	0.011902	0	0
MORF4	10934	broad.mit.edu	37	4	174537650	174537650	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr4:174537650T>C	uc011cke.1	-	1	145	c.145A>G	c.(145-147)AGG>GGG	p.R49G		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		ACCTGGGCCCTTTTCTTTCGA	0.403													3	181	---	---	---	---	0	0	0.004672	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553676	140553676	+	Silent	SNP	C	T	T			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr5:140553676C>T	uc003lit.2	+	1	1434	c.1260C>T	c.(1258-1260)ACC>ACT	p.T420T		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	420	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAACATCACCATCACCGTCA	0.512													5	177	---	---	---	---	0	0	0.001168	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291129	141291129	+	Silent	SNP	G	A	A			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chrX:141291129G>A	uc004fbu.1	-	3	993	c.645C>T	c.(643-645)ACC>ACT	p.T215T		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	215	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TACCCTCATCGGTGAGGCCTA	0.507										HNSCC(46;0.14)			84	133	---	---	---	---	0	0	0.014410	0	0
HIST2H3C	126961	broad.mit.edu	37	1	149821913	149821916	+	5'Flank	DEL	GGAG	-	-			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr1:149821913_149821916delGGAG	uc001esy.2	+						HIST2H2AA3_uc001esx.2_5'Flank	NM_021059	NP_066403	Q71DI3	H32_HUMAN	histone cluster 2, H3c						blood coagulation|nucleosome assembly	nucleoplasm|nucleosome	DNA binding|protein binding				0	Breast(34;0.0124)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.221)			GGCGACCCGCggagggagggaggg	0.490													5	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	1814155	1814155	+	IGR	DEL	A	-	-			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr11:1814155delA								CTSD (28933 upstream) : SYT8 (34554 downstream)																							TGTTCacttcaaaaaaaaaaa	0.179													7	25	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22566684	22566684	+	IGR	DEL	A	-	-			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr15:22566684delA								MIR1268 (53404 upstream) : GOLGA8DP (135601 downstream)																							GTAAAGCGTGAACAAGTAAGA	0.299													10	7	---	---	---	---					
RAB37	326624	broad.mit.edu	37	17	72725494	72725494	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr17:72725494delA	uc010dfu.2	+	2	642	c.172delA	c.(172-174)ATCfs	p.I58fs	RAB37_uc002jlc.2_Frame_Shift_Del_p.I58fs|RAB37_uc002jld.2_Frame_Shift_Del_p.I58fs	NM_175738	NP_783865	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 3	65	Effector region (By similarity).				protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						CACTGTGGGCATCGGATTCAC	0.512													60	100	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	119428155	119428155	+	IGR	DEL	C	-	-			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr4:119428155delC								PRSS12 (154233 upstream) : CEP170L (9340 downstream)																							AGCATAAAttctttttttttt	0.184													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	44056857	44056858	+	IGR	INS	-	TTTG	TTTG	rs143182535	by1000genomes	TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr6:44056857_44056858insTTTG								C6orf223 (83971 upstream) : MRPL14 (24516 downstream)																							ttgcttttttttttgttttCCT	0.257													5	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160132603	160132620	+	IGR	DEL	ACCACTCACACTGCTCTG	-	-			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr6:160132603_160132620delACCACTCACACTGCTCTG								SOD2 (18250 upstream) : WTAP (15509 downstream)																							ctccacaaccaccactcacactgctctgaccaccataa	0.000													7	125	---	---	---	---					
PODXL	5420	broad.mit.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	-	-	rs11277659		TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr7:131241030_131241035delGGCGAC	uc003vqw.3	-	1	342_347	c.84_89delGTCGCC	c.(82-90)CCGTCGCCC>CCC	p.28_30PSP>P	PODXL_uc003vqx.3_In_Frame_Del_p.28_30PSP>P	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	28_30	Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					ATTCTGGGAGggcgacggcgacggcg	0.573													6	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	49297743	49297743	+	IGR	DEL	A	-	-	rs140564135		TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr8:49297743delA								UBE2V2 (323291 upstream) : EFCAB1 (325608 downstream)																							CGGAGGCAGGAAAAAAAAAAG	0.428													6	9	---	---	---	---					
C9orf86	55684	broad.mit.edu	37	9	139734633	139734635	+	In_Frame_Del	DEL	AGA	-	-			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chr9:139734633_139734635delAGA	uc004cji.1	+	14	2226_2228	c.1958_1960delAGA	c.(1957-1962)GAGAAG>GAG	p.K660del	C9orf86_uc004cjj.1_In_Frame_Del_p.K661del|C9orf86_uc004cjk.1_RNA|C9orf86_uc010nbr.1_Intron|C9orf86_uc004cjl.1_RNA|C9orf86_uc010nbs.1_In_Frame_Del_p.K545del|C9orf86_uc004cjn.1_In_Frame_Del_p.K454del	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	660	Interaction with CDKN2A.|Lys-rich.				small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		CCCTCTaaggagaagaagaagaa	0.532													7	86	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	65176645	65176645	+	IGR	DEL	A	-	-			TCGA-EM-A2CR-01A-11D-A17V-08	TCGA-EM-A2CR-10A-01D-A17V-08									Somatic	Phase_I	Capture				Illumina GAIIx	93d1a3b9-03a4-4996-a346-29265d03c432	1150e291-cd97-4352-adc9-55a58fa846b5	g.chrX:65176645delA								MSN (214853 upstream) : MIR223 (62067 downstream)																							AATATCCACCAGTCATCCATG	0.512													7	181	---	---	---	---					
