Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ECE1	1889	broad.mit.edu	37	1	21573852	21573852	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr1:21573852A>G	uc001bek.2	-	9	1100	c.1025T>C	c.(1024-1026)TTG>TCG	p.L342S	ECE1_uc001bem.2_Missense_Mutation_p.L326S|ECE1_uc001bej.2_Missense_Mutation_p.L330S|ECE1_uc001bei.2_Missense_Mutation_p.L339S|ECE1_uc010odl.1_Missense_Mutation_p.L342S|ECE1_uc009vqa.1_Missense_Mutation_p.L342S	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	342	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		GGCGGGTGCCAAGGTCTGCAA	0.532000													3	96	---	---	---	---	0	0	0.000602	0	0
OR10K1	391109	broad.mit.edu	37	1	158436162	158436162	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr1:158436162G>A	uc010pij.1	+	1	811	c.811G>A	c.(811-813)GAC>AAC	p.D271N		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					TTCAAGCCAAGACACCCTAAT	0.418000													4	137	---	---	---	---	0	0	0.001168	0	0
SFMBT2	57713	broad.mit.edu	37	10	7412244	7412244	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr10:7412244T>C	uc009xio.1	-	3	285	c.194A>G	c.(193-195)CAC>CGC	p.H65R	SFMBT2_uc001ijn.1_Missense_Mutation_p.H65R|SFMBT2_uc010qay.1_Missense_Mutation_p.H65R|SFMBT2_uc001ijo.1_Missense_Mutation_p.H65R	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	65	MBT 1.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TTTACATACGTGTTTGAATGA	0.473000													3	108	---	---	---	---	0	0	0.000248	0	0
BMS1	9790	broad.mit.edu	37	10	43318571	43318571	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr10:43318571G>A	uc001jaj.2	+	20	3496	c.3138G>A	c.(3136-3138)ATG>ATA	p.M1046I		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1046					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						TGTAGGGAATGTTTAATTCTG	0.393000													5	179	---	---	---	---	0	0	0.003080	0	0
OR51M1	390059	broad.mit.edu	37	11	5410737	5410737	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr11:5410737C>T	uc010qzc.1	+	1	109	c.109C>T	c.(109-111)CAC>TAC	p.H37Y	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	37						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGCATCAAACACTGGATTTT	0.423000													10	144	---	---	---	---	0	0	0.006214	0	0
GRIA4	2893	broad.mit.edu	37	11	105795388	105795388	+	Silent	SNP	C	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr11:105795388C>T	uc001pix.2	+	12	2186	c.1740C>T	c.(1738-1740)GAC>GAT	p.D580D	GRIA4_uc001piw.2_Silent_p.D580D	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	580	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	AGCCAGAGGACGGAAAGGAAG	0.473000													9	53	---	---	---	---	0	0	0.006214	0	0
BTBD7	55727	broad.mit.edu	37	14	93717850	93717850	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr14:93717850T>C	uc001ybo.2	-	8	2227	c.1901A>G	c.(1900-1902)AAC>AGC	p.N634S	BTBD7_uc010aur.2_Missense_Mutation_p.N159S|BTBD7_uc010two.1_Missense_Mutation_p.N454S|BTBD7_uc001ybp.2_Missense_Mutation_p.N283S	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	634										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		GCTTGACTGGTTGCTGCTGAT	0.418000													40	239	---	---	---	---	0	0	0.002852	0	0
LOC646214	646214	broad.mit.edu	37	15	21936443	21936443	+	RNA	SNP	C	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr15:21936443C>T	uc010tzj.1	-	1		c.4297G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TCATTTGCTTCTTTCATTCAG	0.318000													5	19	---	---	---	---	0	0	0.000602	0	0
SRRM2	23524	broad.mit.edu	37	16	2807800	2807800	+	Missense_Mutation	SNP	G	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr16:2807800G>T	uc002crk.2	+	4	918	c.369G>T	c.(367-369)CAG>CAT	p.Q123H	SRRM2_uc002crj.1_Missense_Mutation_p.Q27H|SRRM2_uc002crl.1_Missense_Mutation_p.Q123H|SRRM2_uc010bsu.1_Missense_Mutation_p.Q27H	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	123						Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						AGACTCACCAgttggcagaat	0.264000													42	97	---	---	---	---	1.76056e-25	2.10131e-25	0.002852	1	0
ZNF267	10308	broad.mit.edu	37	16	31925925	31925925	+	Missense_Mutation	SNP	A	G	G			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr16:31925925A>G	uc002ecs.3	+	4	564	c.355A>G	c.(355-357)AGG>GGG	p.R119G		NM_003414	NP_003405	Q14586	ZN267_HUMAN	zinc finger protein 267	119					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|breast(1)|skin(1)	4						AAGGTGGAAAAGGGAGGAGTG	0.378000													3	142	---	---	---	---	0	0	0.004672	0	0
CDK12	51755	broad.mit.edu	37	17	37682293	37682293	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr17:37682293G>A	uc010cvv.2	+	13	4070	c.3484G>A	c.(3484-3486)GAA>AAA	p.E1162K	CDK12_uc010wef.1_Missense_Mutation_p.E1161K|CDK12_uc002hrw.3_Missense_Mutation_p.E1162K	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	1162					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						TGCCCTGACGGAAGCTACTTC	0.567000										TCGA Ovarian(9;0.13)			12	38	---	---	---	---	0	0	0.000978	0	0
MYBPC2	4606	broad.mit.edu	37	19	50940753	50940753	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr19:50940753C>T	uc002psf.2	+	6	538	c.487C>T	c.(487-489)CAG>TAG	p.Q163*		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	163					cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		TGCCTCTGGGCAGAGTCTAGA	0.587000													5	11	---	---	---	---	0	0	0.001984	0	0
SPR	6697	broad.mit.edu	37	2	73115548	73115548	+	Missense_Mutation	SNP	G	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr2:73115548G>A	uc002sik.2	+	2	460	c.410G>A	c.(409-411)AGC>AAC	p.S137N		NM_003124	NP_003115	P35270	SPRE_HUMAN	sepiapterin reductase	137					nitric oxide biosynthetic process|tetrahydrobiopterin biosynthetic process	cytoplasm	aldo-keto reductase (NADP) activity|NADP binding|sepiapterin reductase activity			ovary(2)	2						CTGACTTCCAGCGTCCTGAAG	0.562000											OREG0014704	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	102	---	---	---	---	0	0	0.005443	0	0
DNAH6	1768	broad.mit.edu	37	2	84811124	84811124	+	Missense_Mutation	SNP	T	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr2:84811124T>A	uc010fgb.2	+	15	2368	c.2231T>A	c.(2230-2232)ATT>AAT	p.I744N	DNAH6_uc002soo.2_Missense_Mutation_p.I323N|DNAH6_uc002sop.2_Missense_Mutation_p.I323N	NM_001370	NP_001361	Q9C0G6	DYH6_HUMAN	dynein, axonemal, heavy polypeptide 6	744	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			central_nervous_system(1)	1						TCCATTTAGATTGAAAGCCTT	0.373000													18	71	---	---	---	---	0	0	0.001882	0	0
FRG1B	284802	broad.mit.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr20:29625941A>T	uc010ztl.1	+	2	127	c.95A>T	c.(94-96)GAT>GTT	p.D32V	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGGCATTCAGATGCAATTGGA	0.333000													10	160	---	---	---	---	0	0	0.001855	0	0
BAP1	8314	broad.mit.edu	37	3	52443600	52443600	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr3:52443600T>C	uc003ddx.2	-	3	207	c.92A>G	c.(91-93)GAG>GGG	p.E31G	PHF7_uc003ddy.2_5'Flank|PHF7_uc003ddz.2_5'Flank	NM_004656	NP_004647	Q92560	BAP1_HUMAN	BRCA1 associated protein-1	31					monoubiquitinated histone H2A deubiquitination|negative regulation of cell proliferation|protein K48-linked deubiquitination|regulation of cell cycle|regulation of cell growth|ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|PR-DUB complex	chromatin binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			pleura(32)|eye(28)|lung(2)|ovary(2)|breast(1)	65				BRCA - Breast invasive adenocarcinoma(193;1.72e-05)|Kidney(197;0.0018)|KIRC - Kidney renal clear cell carcinoma(197;0.00203)|OV - Ovarian serous cystadenocarcinoma(275;0.0277)		GTCGTAGATCTCCTCCACTTG	0.617000			N|Mis|F|S|O		uveal melanoma|breast|NSCLC								9	493	---	---	---	---	0	0	0.006214	0	0
CCDC52	152185	broad.mit.edu	37	3	113207801	113207801	+	Missense_Mutation	SNP	T	C	C			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr3:113207801T>C	uc003eag.3	-	7	893	c.602A>G	c.(601-603)AAT>AGT	p.N201S	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Missense_Mutation_p.N97S	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	201					cell division|mitosis	centriole|spindle	protein binding				0						CCTGTCTGTATTCGTGTTAGA	0.358000													3	153	---	---	---	---	0	0	0.004672	0	0
PRDM9	56979	broad.mit.edu	37	5	23524563	23524563	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr5:23524563T>A	uc003jgo.2	+	10	1253	c.1071T>A	c.(1069-1071)TAT>TAA	p.Y357*		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	357	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TGGTCTGGTATGGGGATGAAT	0.507000										HNSCC(3;0.000094)			10	128	---	---	---	---	0	0	0.000978	0	0
COL9A1	1297	broad.mit.edu	37	6	70964879	70964879	+	Missense_Mutation	SNP	C	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr6:70964879C>T	uc003pfg.3	-	23	1744	c.1585G>A	c.(1585-1587)GGT>AGT	p.G529S	COL9A1_uc003pfe.3_Missense_Mutation_p.G102S|COL9A1_uc003pff.3_Missense_Mutation_p.G286S	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	529	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						CCAGGGAGACCAGGAATTCCT	0.423000													33	218	---	---	---	---	0	0	0.004289	0	0
ZBTB24	9841	broad.mit.edu	37	6	109787521	109787521	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr6:109787521G>C	uc003ptl.1	-	7	1795	c.1627C>G	c.(1627-1629)CAA>GAA	p.Q543E	MICAL1_uc011eaq.1_5'Flank|ZBTB24_uc011ear.1_RNA|ZBTB24_uc010kds.1_Missense_Mutation_p.Q487E|ZBTB24_uc010kdt.1_RNA	NM_014797	NP_055612	O43167	ZBT24_HUMAN	zinc finger and BTB domain containing 24 isoform	543					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		GTAGAGAGTTGATATGGCTGT	0.448000													5	177	---	---	---	---	0	0	0.003080	0	0
ZBTB24	9841	broad.mit.edu	37	6	109802299	109802299	+	Missense_Mutation	SNP	T	C	C	rs141429160		TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr6:109802299T>C	uc003ptl.1	-	2	1099	c.931A>G	c.(931-933)ATC>GTC	p.I311V	ZBTB24_uc011ear.1_RNA|ZBTB24_uc010kds.1_Missense_Mutation_p.I311V|ZBTB24_uc010kdt.1_RNA|ZBTB24_uc003ptm.2_Missense_Mutation_p.I311V	NM_014797	NP_055612	O43167	ZBT24_HUMAN	zinc finger and BTB domain containing 24 isoform	311	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		CTCTGGTGGATTGCTAAAAAG	0.428000													7	268	---	---	---	---	0	0	0.004482	0	0
RMND1	55005	broad.mit.edu	37	6	151726916	151726916	+	Missense_Mutation	SNP	T	G	G			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr6:151726916T>G	uc003qoi.2	-	11	1436	c.1256A>C	c.(1255-1257)CAC>CCC	p.H419P	RMND1_uc011eeq.1_Missense_Mutation_p.H208P	NM_017909	NP_060379	Q9NWS8	RMND1_HUMAN	required for meiotic nuclear division 1 homolog	419											0		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.146)	OV - Ovarian serous cystadenocarcinoma(155;6.8e-11)		CTCATTCAGGTGATTCCGCAT	0.373000													10	43	---	---	---	---	0	0	0.008291	0	0
POM121	9883	broad.mit.edu	37	7	72412636	72412636	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr7:72412636C>T	uc003twk.2	+	11	2104	c.2104C>T	c.(2104-2106)CAA>TAA	p.Q702*	POM121_uc003twj.2_Nonsense_Mutation_p.Q437*|POM121_uc010lam.1_Nonsense_Mutation_p.Q437*	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	702	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				CGCCCCCAAGCAAAGCTTCCT	0.597000													5	113	---	---	---	---	0	0	0.001168	0	0
MEPCE	56257	broad.mit.edu	37	7	100028454	100028454	+	Missense_Mutation	SNP	G	C	C			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr7:100028454G>C	uc003uuw.2	+	1	926	c.813G>C	c.(811-813)CAG>CAC	p.Q271H	ZCWPW1_uc003uut.2_5'Flank|ZCWPW1_uc011kjr.1_5'Flank|ZCWPW1_uc003uuu.1_5'Flank|ZCWPW1_uc011kjt.1_5'Flank|ZCWPW1_uc011kju.1_5'Flank|MEPCE_uc003uuv.2_5'UTR	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	271							methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGCACCACCAGCAGCAGCAGG	0.647000													5	289	---	---	---	---	0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	MT	3880	3880	+	RNA	SNP	G	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chrM:3880G>A	uc004cos.3	+	2		c.2173G>A			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		CCACACTAGCAGAGACCAACC	0.512000													206	161	---	---	---	---	0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	MT	11403	11403	+	RNA	SNP	G	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chrM:11403G>A	uc004cov.3	+	1		c.826G>A			uc004cow.1_5'Flank|uc004cox.3_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		ACTCCACTTATGACTCCCTAA	0.443000													272	3	---	---	---	---	0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	10	132587296	132587297	+	IGR	INS	-	A	A	rs34796062		TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr10:132587296_132587297insA								GLRX3 (604512 upstream) : TCERG1L (303359 downstream)																							gggagcaggggagcaggggagc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	45536103	45536103	+	IGR	DEL	T	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr11:45536103delT								SYT13 (228219 upstream) : CHST1 (134324 downstream)																							TTGTTGTACCTTTTTTTAAGC	0.378													2	4	---	---	---	---					
POLD3	10714	broad.mit.edu	37	11	74336608	74336609	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr11:74336608_74336609insA	uc001ovf.1	+	8	964_965	c.889_890insA	c.(889-891)GAAfs	p.E297fs	POLD3_uc009yua.1_Frame_Shift_Ins_p.E191fs	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	297					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					GCTGCAGAAGGAAAAAAAAAGG	0.460													7	57	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20508055	20508056	+	IGR	INS	-	GCCCT	GCCCT	rs138742206	by1000genomes	TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr15:20508055_20508056insGCCCT								None (None upstream) : GOLGA6L6 (229038 downstream)																							ccctggccccggccctgccctg	0.243													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	102299886	102299887	+	5'Flank	INS	-	G	G			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr15:102299886_102299887insG	uc002bzh.1	-						uc002bzk.2_5'Flank|uc002bzn.2_5'Flank|uc010uso.1_5'Flank|uc002bzs.2_5'Flank|uc010usv.1_5'Flank|uc002cal.2_5'Flank|uc002cam.2_5'Flank|uc010usx.1_5'Flank|uc002cao.2_5'Flank|uc002cap.2_5'Flank|uc002caq.2_5'Flank|uc010usz.1_5'Flank|uc010uta.1_5'Flank|uc002cas.2_5'Flank|uc002cat.1_5'Flank|uc002cau.2_5'Flank|uc010utb.1_5'Flank|uc002cav.2_5'Flank|uc002caw.2_5'Flank|uc002cax.2_5'Flank|uc010utc.1_5'Flank|uc002cay.2_5'Flank|uc002cbb.2_5'Flank|uc002cbc.1_5'Flank|uc002cbd.2_5'Flank|uc002cbe.2_5'Flank|uc002cbg.2_5'Flank|uc002cbh.2_5'Flank|uc002cbi.2_5'Flank|uc002cbk.2_5'Flank|uc002cbl.2_5'Flank|uc010utd.1_5'Flank					DQ575740																		AACCTGTACTCGCGTCGGAACC	0.589													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46429993	46430017	+	IGR	DEL	AATCATCATCAAATGAATTGAATGC	-	-	rs148322524		TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr16:46429993_46430017delAATCATCATCAAATGAATTGAATGC								None (None upstream) : ANKRD26P1 (73232 downstream)																							aattgaatggaatcatcatcaaatgaattgaatgcaatcatcaaa	0.004													2	4	---	---	---	---					
FAM38A	9780	broad.mit.edu	37	16	88789666	88789667	+	In_Frame_Ins	INS	-	CCTGCT	CCTGCT	rs143959641	by1000genomes	TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr16:88789666_88789667insCCTGCT	uc010vpb.1	-	32	4408_4409	c.4405_4406insAGCAGG	c.(4405-4407)GCA>GAGCAGGCA	p.1468_1469insEQ	FAM38A_uc002flr.3_In_Frame_Ins_p.1036_1037insEQ|FAM38A_uc010cib.2_Intron	NM_001142864	NP_001136336	Q92508	PIEZ1_HUMAN	family with sequence similarity 38, member A	1468_1469						endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to membrane|plasma membrane	ion channel activity				0						TTCCTGCCTTGCCTGCTCCTGC	0.693													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	20976805	20976806	+	RNA	INS	-	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr19:20976805_20976806insT	uc002npe.2	+	3		c.522_523insT								Homo sapiens zinc finger protein 66, mRNA (cDNA clone MGC:87430 IMAGE:5270688), complete cds.																		CTGGGCAGCTGTTTtttttgtt	0.322													2	4	---	---	---	---					
LSR	51599	broad.mit.edu	37	19	35753538	35753540	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr19:35753538_35753540delTGC	uc002nyl.2	+	5	1088_1090	c.865_867delTGC	c.(865-867)TGCdel	p.C291del	LSR_uc002nym.2_In_Frame_Del_p.C272del|LSR_uc002nyn.2_Intron|LSR_uc002nyo.2_In_Frame_Del_p.C272del|LSR_uc010xsr.1_Intron|LSR_uc002nyp.2_In_Frame_Del_p.C254del	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	291	Cys-rich.|Cytoplasmic (Potential).				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			CCCGCACACTTGCTGCTGCTACG	0.621													8	143	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	44915710	44915710	+	IGR	DEL	C	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr19:44915710delC								ZFP112 (9933 upstream) : ZNF229 (14716 downstream)																							tactctccaaccacgcccaga	0.000													3	3	---	---	---	---					
MIR518B	574474	broad.mit.edu	37	19	54204650	54204651	+	5'Flank	INS	-	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr19:54204650_54204651insT	hsa-mir-518b|MI0003156	+																							0						ctgtttttttgttttttttttt	0.188													4	5	---	---	---	---					
MIR1285-2	100302268	broad.mit.edu	37	2	70480799	70480799	+	5'Flank	DEL	T	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr2:70480799delT	hsa-mir-1285-2|MI0006347	-																							0						GAAATGAGACTTTTTTTTTTT	0.343													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	92260423	92260424	+	IGR	INS	-	C	C	rs111904852		TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr2:92260423_92260424insC								FKSG73 (129929 upstream) : None (None downstream)																							tagctgATAGATAACATCAAGT	0.223													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	130893081	130893082	+	IGR	DEL	AA	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr2:130893081_130893082delAA								POTEF (6286 upstream) : CCDC74B (3780 downstream)																							actccatctcaaaaaaaaaaaa	0.257													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9590549	9590550	+	IGR	INS	-	A	A			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr21:9590549_9590550insA								None (None upstream) : None (None downstream)																							CCCTCaaatttaaaaaattata	0.322													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	116723511	116723511	+	IGR	DEL	T	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr4:116723511delT								NDST4 (688479 upstream) : MIR1973 (497370 downstream)																							cctctccttatttttttttgt	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	79987981	79987981	+	IGR	DEL	G	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr6:79987981delG								HMGN3 (43526 upstream) : LCA5 (206728 downstream)																							GCCTGGGTTTGGCATGATGAT	0.448													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	1235946	1235946	+	IGR	DEL	T	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr7:1235946delT								ZFAND2A (36091 upstream) : UNCX (36708 downstream)																							GAGGGGCGGGTGGGGGGACAC	0.657													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	31032309	31032311	+	IGR	DEL	GCT	-	-	rs72214821		TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr7:31032309_31032311delGCT								GHRHR (13168 upstream) : ADCYAP1R1 (59831 downstream)																							TAAAATTAAGgctgctgctgctg	0.488													2	4	---	---	---	---					
MLL3	58508	broad.mit.edu	37	7	151970890	151970891	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr7:151970890_151970891insT	uc003wla.2	-	7	1130_1131	c.911_912insA	c.(910-912)CAGfs	p.Q304fs		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	304					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AATGATACATCTGGGTACATTT	0.436			N		medulloblastoma								7	318	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	55243463	55243464	+	IGR	INS	-	A	A	rs143800844		TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr8:55243463_55243464insA								MRPL15 (182389 upstream) : SOX17 (127031 downstream)																							AGTTTAGTTTGAAAAAAAAAAA	0.139													5	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	139082054	139082055	+	IGR	INS	-	CCTCCC	CCTCCC			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chr9:139082054_139082055insCCTCCC								C9orf69 (71323 upstream) : LHX3 (6043 downstream)																							CTTTCTGCCGTcctccccctcc	0.614													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	302	303	+	RNA	INS	-	C	C			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chrM:302_303insC	uc004coq.3	-	2		c.66_67insG			uc004cor.1_5'Flank|uc004cos.3_5'Flank					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		TTTCCACCAAACCCCCCCCTCC	0.416													34	124	---	---	---	---					
CYorf15B	84663	broad.mit.edu	37	Y	21758004	21758005	+	5'Flank	DEL	AG	-	-			TCGA-EM-A3O9-01A-11D-A21Z-08	TCGA-EM-A3O9-10A-01D-A21Z-08									Somatic	Phase_I	Capture				Illumina GAIIx	41f16ea2-75e3-4257-b53d-2fe305ce9ff4	e91ddb5f-f587-4569-98ea-7473379e654f	g.chrY:21758004_21758005delAG	uc011nay.1	+							NM_032576	NP_115965	Q9BZA4	CY15B_HUMAN	lipopolysaccaride-specific response 5-like												0						GAAAGACATCAGAGAGAGAGAG	0.347													2	4	---	---	---	---					
