Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CDC42	998	broad.mit.edu	37	1	22412941	22412941	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr1:22412941A>T	uc001bfq.2	+	5	480	c.188A>T	c.(187-189)GAT>GTT	p.D63V	CDC42_uc009vqg.1_Missense_Mutation_p.D63V|CDC42_uc001bfp.2_Missense_Mutation_p.D63V|CDC42_uc001bfr.2_Missense_Mutation_p.D63V|CDC42_uc010odr.1_Missense_Mutation_p.D108V|CDC42_uc010ods.1_Missense_Mutation_p.D105V|CDC42_uc009vqh.2_Missense_Mutation_p.D22V	NM_001039802	NP_001034891	P60953	CDC42_HUMAN	cell division cycle 42 isoform 1	63					actin cytoskeleton organization|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|establishment or maintenance of cell polarity|macrophage differentiation|muscle cell differentiation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of protein complex assembly|positive regulation of muscle cell differentiation|positive regulation of pseudopodium assembly|regulation of filopodium assembly|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|filopodium|plasma membrane	GTP binding|GTPase activity|protein binding|thioesterase binding			haematopoietic_and_lymphoid_tissue(1)	1		Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;6.55e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)|Prostate(1639;0.0792)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0452)|OV - Ovarian serous cystadenocarcinoma(117;7.32e-26)|Colorectal(126;1.35e-07)|COAD - Colon adenocarcinoma(152;7.73e-06)|GBM - Glioblastoma multiforme(114;8.62e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000649)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00767)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.207)		GGGCAAGAGGATTATGACAGA	0.373													14	69	---	---	---	---	0	0	0.028581	0	0
IGFN1	91156	broad.mit.edu	37	1	201183351	201183351	+	Silent	SNP	G	A	A			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr1:201183351G>A	uc001gwc.2	+	2	1027	c.255G>A	c.(253-255)CAG>CAA	p.Q85Q	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						TGGAAGTGCAGCCGGGGGAGG	0.657													6	28	---	---	---	---	0	0	0.058154	0	0
CHI3L1	1116	broad.mit.edu	37	1	203148632	203148632	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr1:203148632C>G	uc001gzi.2	-	10	1264	c.1093G>C	c.(1093-1095)GGC>CGC	p.G365R	FMOD_uc010pqi.1_Intron|CHI3L1_uc001gzk.1_3'UTR|CHI3L1_uc001gzj.2_Missense_Mutation_p.G304R|CHI3L1_uc001gzl.3_5'Flank	NM_001276	NP_001267	P36222	CH3L1_HUMAN	chitinase 3-like 1 precursor	365					chitin catabolic process	extracellular space|proteinaceous extracellular matrix	cation binding|chitinase activity|extracellular matrix structural constituent|sugar binding			pancreas(1)	1						AGATCCTGGCCACAGAAGGAG	0.637													4	65	---	---	---	---	0	0	0.009096	0	0
DLG5	9231	broad.mit.edu	37	10	79581669	79581669	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr10:79581669G>T	uc001jzk.2	-	15	2643	c.2573C>A	c.(2572-2574)CCA>CAA	p.P858Q	DLG5_uc001jzi.2_5'Flank|DLG5_uc001jzj.2_Intron|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.P462Q	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	858					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TGGGGGGCCTGGCTCCTTCCT	0.592													10	94	---	---	---	---	1.08611e-07	1.32452e-07	0.080935	1	0
Unknown	0	broad.mit.edu	37	11	55065601	55065601	+	RNA	SNP	C	G	G	rs4100282		TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr11:55065601C>G	uc001nhl.1	-	1		c.108G>C								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		CACTGAGCAACAACTGCCATG	0.488													5	46	---	---	---	---	0	0	0.021553	0	0
OR5AR1	219493	broad.mit.edu	37	11	56431736	56431736	+	Missense_Mutation	SNP	C	A	A			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr11:56431736C>A	uc010rjm.1	+	1	575	c.575C>A	c.(574-576)ACC>AAC	p.T192N		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCTCAGACACCTACATCAGT	0.453													22	150	---	---	---	---	0.00152264	0.00177051	0.055883	1	0
SPTBN2	6712	broad.mit.edu	37	11	66472833	66472833	+	Silent	SNP	C	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr11:66472833C>T	uc001ojd.2	-	14	1986	c.1914G>A	c.(1912-1914)GAG>GAA	p.E638E		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	638	Spectrin 3.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCCGTGATTCCTCCAGCCGGG	0.697													5	33	---	---	---	---	0	0	0.021553	0	0
CHEK1	1111	broad.mit.edu	37	11	125513996	125513996	+	Missense_Mutation	SNP	G	A	A	rs34097480		TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr11:125513996G>A	uc009zbo.2	+	10	1826	c.934G>A	c.(934-936)GTG>ATG	p.V312M	CHEK1_uc010sbh.1_Missense_Mutation_p.V328M|CHEK1_uc010sbi.1_Missense_Mutation_p.V312M|CHEK1_uc001qcf.3_Missense_Mutation_p.V312M|CHEK1_uc009zbp.2_Missense_Mutation_p.V312M|CHEK1_uc001qcg.3_Missense_Mutation_p.V312M|CHEK1_uc009zbq.2_Missense_Mutation_p.V312M|CHEK1_uc001qci.1_RNA|CHEK1_uc001qcj.2_Translation_Start_Site	NM_001114122	NP_001107594	O14757	CHK1_HUMAN	checkpoint kinase 1	312					cellular response to mechanical stimulus|DNA repair|DNA replication|gamete generation|negative regulation of cell proliferation|reciprocal meiotic recombination|regulation of cyclin-dependent protein kinase activity|replicative senescence	condensed nuclear chromosome|microtubule organizing center|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|skin(1)	6	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0748)		TGAAGAAAATGTGAAGTACTC	0.388								Other_conserved_DNA_damage_response_genes					8	96	---	---	---	---	0	0	0.038147	0	0
POSTN	10631	broad.mit.edu	37	13	38166263	38166263	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr13:38166263A>G	uc001uwo.3	-	3	375	c.257T>C	c.(256-258)ATG>ACG	p.M86T	POSTN_uc001uwp.3_Missense_Mutation_p.M86T|POSTN_uc001uwr.2_Missense_Mutation_p.M86T|POSTN_uc001uwq.2_Missense_Mutation_p.M86T|POSTN_uc010teu.1_Missense_Mutation_p.M86T|POSTN_uc010tev.1_Missense_Mutation_p.M86T|POSTN_uc010tew.1_Missense_Mutation_p.M86T|POSTN_uc010tex.1_Missense_Mutation_p.M1T	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	86	EMI.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		CATTCCTTCCATTCTCATATA	0.333													4	45	---	---	---	---	0	0	0.014758	0	0
DHRS2	10202	broad.mit.edu	37	14	24114436	24114436	+	Silent	SNP	G	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr14:24114436G>T	uc001wkt.3	+	9	1275	c.828G>T	c.(826-828)CGG>CGT	p.R276R	DHRS2_uc001wku.3_Missense_Mutation_p.V273L|DHRS2_uc010akv.2_RNA|DHRS2_uc001wkv.3_Missense_Mutation_p.G274V	NM_182908	NP_878912	Q13268	DHRS2_HUMAN	dehydrogenase/reductase member 2 isoform 1	Error:Variant_position_missing_in_Q13268_after_alignment					C21-steroid hormone metabolic process|cellular response to oxidative stress|myeloid dendritic cell differentiation|negative regulation of apoptosis|negative regulation of cell proliferation|response to toxin	mitochondrion|nuclear envelope	binding|carbonyl reductase (NADPH) activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00659)		GAACATTGCGGTGGCAGGCTA	0.602													4	123	---	---	---	---	0.00024832	0.000295619	0.009096	1	0
PTPN21	11099	broad.mit.edu	37	14	88945377	88945377	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr14:88945377C>G	uc001xwv.3	-	13	2729	c.2398G>C	c.(2398-2400)GAC>CAC	p.D800H	PTPN21_uc010twc.1_Missense_Mutation_p.D596H	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	800						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						GTGGTGAGGTCGGACTCCGAC	0.647													8	62	---	---	---	---	0	0	0.038147	0	0
TRIP11	9321	broad.mit.edu	37	14	92471796	92471796	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr14:92471796C>T	uc001xzy.2	-	11	3312	c.2524G>A	c.(2524-2526)GAA>AAA	p.E842K	TRIP11_uc010auf.1_Missense_Mutation_p.E578K	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	842	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		CTTAAAATTTCATTTTTTCTT	0.333			T	PDGFRB	AML								5	74	---	---	---	---	0	0	0.021553	0	0
UBN1	29855	broad.mit.edu	37	16	4924499	4924499	+	Silent	SNP	T	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr16:4924499T>G	uc002cyb.2	+	15	2427	c.2088T>G	c.(2086-2088)CCT>CCG	p.P696P	UBN1_uc010uxw.1_Silent_p.P696P|UBN1_uc002cyc.2_Silent_p.P696P	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	696					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						TCACACTGCCTGCACCCTCAA	0.498													26	266	---	---	---	---	0	0	0.037714	0	0
SRCAP	10847	broad.mit.edu	37	16	30744989	30744989	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr16:30744989G>A	uc002dze.1	+	29	6749	c.6364G>A	c.(6364-6366)GGT>AGT	p.G2122S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.G1917S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	2122	Helicase C-terminal.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TCGGAGTGGGGGTGTGGGCGT	0.502													10	114	---	---	---	---	0	0	0.080935	0	0
VMO1	284013	broad.mit.edu	37	17	4689488	4689488	+	Missense_Mutation	SNP	G	A	A	rs147226483		TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr17:4689488G>A	uc002fyx.2	-	1	242	c.160C>T	c.(160-162)CCC>TCC	p.P54S	VMO1_uc010vsh.1_Missense_Mutation_p.P54S|VMO1_uc010vsi.1_Missense_Mutation_p.P54S|VMO1_uc002fyy.2_Missense_Mutation_p.P54S|GLTPD2_uc002fza.1_5'Flank	NM_182566	NP_872372	Q7Z5L0	VMO1_HUMAN	vitelline membrane outer layer 1 isoform 1	54					vitelline membrane formation	extracellular region				ovary(1)	1						AATCCATCGGGACACATCTCA	0.622													8	32	---	---	---	---	0	0	0.047766	0	0
POLR2A	5430	broad.mit.edu	37	17	7404290	7404290	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr17:7404290G>A	uc002ghf.3	+	12	2147	c.1913G>A	c.(1912-1914)GGC>GAC	p.G638D		NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	638					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				ctgatcatgggcatcctgtgt	0.398													3	47	---	---	---	---	0	0	0.004672	0	0
RAPGEFL1	51195	broad.mit.edu	37	17	38345558	38345558	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr17:38345558C>G	uc010cwu.1	+	6	917	c.427C>G	c.(427-429)CTT>GTT	p.L143V	RAPGEFL1_uc010wfd.1_Missense_Mutation_p.L79V	NM_016339	NP_057423	Q9UHV5	RPGFL_HUMAN	Rap guanine nucleotide exchange factor	349					G-protein coupled receptor protein signaling pathway|nervous system development|small GTPase mediated signal transduction	intracellular|membrane fraction	guanyl-nucleotide exchange factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GACGGAGAAACTTCAATATTC	0.552													54	185	---	---	---	---	0	0	0.048971	0	0
SPAG9	9043	broad.mit.edu	37	17	49052246	49052246	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr17:49052246C>G	uc002itc.2	-	28	3795	c.3586G>C	c.(3586-3588)GAA>CAA	p.E1196Q	SPAG9_uc002itb.2_Missense_Mutation_p.E1182Q|SPAG9_uc002itd.2_Missense_Mutation_p.E1186Q|SPAG9_uc002ita.2_Missense_Mutation_p.E1052Q	NM_001130528	NP_001124000	O60271	JIP4_HUMAN	sperm associated antigen 9 isoform 1	1196					positive regulation of cell migration|positive regulation of muscle cell differentiation|retrograde transport, endosome to Golgi|spermatogenesis	acrosomal vesicle|integral to membrane|perinuclear region of cytoplasm				lung(4)|breast(1)	5			BRCA - Breast invasive adenocarcinoma(22;4.24e-07)			TCACTGTTTTCATCACCATAT	0.418													5	61	---	---	---	---	0	0	0.014758	0	0
OTOP3	347741	broad.mit.edu	37	17	72938090	72938090	+	Silent	SNP	C	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr17:72938090C>T	uc010wrr.1	+	3	585	c.585C>T	c.(583-585)GAC>GAT	p.D195D	OTOP3_uc010wrq.1_Silent_p.D177D	NM_178233	NP_839947	Q7RTS5	OTOP3_HUMAN	otopetrin 3	195	Helical; (Potential).					integral to membrane|intracellular	zinc ion binding			ovary(1)	1	all_lung(278;0.151)|Lung NSC(278;0.185)					CACAGCTGGACCTTGTCTTCT	0.567													4	41	---	---	---	---	0	0	0.009096	0	0
MGAT5B	146664	broad.mit.edu	37	17	74869018	74869018	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr17:74869018G>A	uc002jtg.3	+	2	468	c.154G>A	c.(154-156)GAC>AAC	p.D52N	MGAT5B_uc002jth.2_Missense_Mutation_p.D52N|MGAT5B_uc002jti.2_Missense_Mutation_p.D63N			Q3V5L5	MGT5B_HUMAN	Homo sapiens GnT-IX mRNA for N-Acetylglucosaminyltransferase IX, complete cds.	52	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						GCGCCTGGGGGACTCGCCATT	0.602													16	78	---	---	---	---	0	0	0.028581	0	0
CTDP1	9150	broad.mit.edu	37	18	77474796	77474796	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr18:77474796A>G	uc002lnh.1	+	8	1483	c.1336A>G	c.(1336-1338)ACG>GCG	p.T446A	CTDP1_uc002lni.1_Missense_Mutation_p.T446A|CTDP1_uc010drd.1_Missense_Mutation_p.T446A	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	446					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		CCAGGGTGCCACGGGCACTGA	0.677													4	8	---	---	---	---	0	0	0.014758	0	0
THEG	51298	broad.mit.edu	37	19	371211	371211	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr19:371211C>T	uc002lol.2	-	6	786	c.747G>A	c.(745-747)ATG>ATA	p.M249I	THEG_uc002lom.2_Missense_Mutation_p.M225I	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	249					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCACCTCAGACATGGGCATGC	0.642													26	147	---	---	---	---	0	0	0.099896	0	0
ZNF461	92283	broad.mit.edu	37	19	37129608	37129608	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr19:37129608C>T	uc002oem.2	-	6	1867	c.1639G>A	c.(1639-1641)GAG>AAG	p.E547K	ZNF461_uc002oen.2_Missense_Mutation_p.E516K|ZNF461_uc010xtj.1_Missense_Mutation_p.E524K	NM_153257	NP_694989	Q8TAF7	ZN461_HUMAN	gonadotropin inducible transcription repressor	547					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			ACTGGCTTCTCGCCAGTATGA	0.383													3	27	---	---	---	---	0	0	0.009096	0	0
ZNF585B	92285	broad.mit.edu	37	19	37676134	37676134	+	Missense_Mutation	SNP	C	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr19:37676134C>G	uc002ofq.2	-	5	2559	c.2305G>C	c.(2305-2307)GCT>CCT	p.A769P	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.A583P	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	769					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTCTCTCAAGCGTGGCTGCTC	0.448													8	91	---	---	---	---	0	0	0.038147	0	0
TFPI	7035	broad.mit.edu	37	2	188332580	188332580	+	Silent	SNP	A	G	G			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr2:188332580A>G	uc002upx.2	-	7	741	c.708T>C	c.(706-708)AAT>AAC	p.N236N	TFPI_uc002upy.2_Silent_p.N236N|TFPI_uc002upz.2_Silent_p.N232N	NM_006287	NP_006278	P10646	TFPI1_HUMAN	tissue factor pathway inhibitor isoform a	236	BPTI/Kunitz inhibitor 3.				blood coagulation, extrinsic pathway	extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0554)		Coagulation factor VIIa(DB00036)	CAATGACTGAATTGTAGTAGA	0.413													17	69	---	---	---	---	0	0	0.055883	0	0
CYP2D7P1	1564	broad.mit.edu	37	22	42538870	42538870	+	Missense_Mutation	SNP	A	C	C	rs2982057	by1000genomes	TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr22:42538870A>C	uc003bci.2	-	3	475	c.94T>G	c.(94-96)TCG>GCG	p.S32A	CYP2D7P1_uc003bcg.2_5'Flank|CYP2D7P1_uc003bch.2_5'Flank|CYP2D7P1_uc010gyv.2_Intron|CYP2D7P1_uc010gyw.2_RNA|CYP2D7P1_uc010gyx.1_Missense_Mutation_p.S32A	NR_002570				SubName: Full=Cytochrome P450 2D6;          EC=1.14.14.1;												0						CCATAGCGCGACAGGAACACC	0.687													3	43	---	---	---	---	0	0	0.004672	0	0
IMPDH2	3615	broad.mit.edu	37	3	49064023	49064023	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr3:49064023G>C	uc003cvt.2	-	8	931	c.839C>G	c.(838-840)TCC>TGC	p.S280C		NM_000884	NP_000875	P12268	IMDH2_HUMAN	inosine monophosphate dehydrogenase 2	280					GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	IMP dehydrogenase activity|metal ion binding|nucleotide binding|protein binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)	CTGGAAGATGGAATTTCCCTG	0.468													5	78	---	---	---	---	0	0	0.029380	0	0
C3orf67	200844	broad.mit.edu	37	3	58849302	58849302	+	Silent	SNP	G	T	T	rs148755922		TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr3:58849302G>T	uc003dkt.1	-	12	1609	c.1200C>A	c.(1198-1200)GGC>GGA	p.G400G	C3orf67_uc003dks.1_Silent_p.G215G|uc003dku.1_Intron|C3orf67_uc003dkv.1_Silent_p.G215G|C3orf67_uc003dkw.2_Silent_p.G295G	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	400											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		TGCTGTCGCCGCCGTAAAAAT	0.423													6	35	---	---	---	---	0.00198382	0.00225434	0.029380	1	0
C3orf21	152002	broad.mit.edu	37	3	194991296	194991296	+	Silent	SNP	G	A	A			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr3:194991296G>A	uc003fum.3	-	1	600	c.492C>T	c.(490-492)GGC>GGT	p.G164G		NM_152531	NP_689744	Q8NBI6	CC021_HUMAN	hypothetical protein LOC152002	164						integral to membrane	transferase activity, transferring glycosyl groups				0	all_cancers(143;9.33e-09)|Ovarian(172;0.0634)		Epithelial(36;1.73e-20)|all cancers(36;1.42e-18)|OV - Ovarian serous cystadenocarcinoma(49;1.56e-17)|Lung(62;0.000117)|LUSC - Lung squamous cell carcinoma(58;0.000146)	GBM - Glioblastoma multiforme(46;1.36e-05)		TGCACTTGAAGCCAGCGGCGG	0.711													3	6	---	---	---	---	0	0	0.004672	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142393652	142393652	+	Missense_Mutation	SNP	A	C	C			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr5:142393652A>C	uc011dbj.1	+	12	1150	c.1115A>C	c.(1114-1116)AAC>ACC	p.N372T	ARHGAP26_uc003lmt.2_Missense_Mutation_p.N372T|ARHGAP26_uc003lmw.2_Missense_Mutation_p.N372T	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	372					actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGGTCTACAACTCGAACAAA	0.423													15	53	---	---	---	---	0	0	0.020292	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				16	56	---	---	---	---	0	0	0.028581	0	0
SGK223	157285	broad.mit.edu	37	8	8176174	8176174	+	Silent	SNP	G	A	A			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr8:8176174G>A	uc003wsh.3	-	5	3711	c.3711C>T	c.(3709-3711)CCC>CCT	p.P1237P		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	1237	Protein kinase.						ATP binding|non-membrane spanning protein tyrosine kinase activity				0						ACACGATCTCGGGGGCCAGCC	0.612													3	30	---	---	---	---	0	0	0.004672	0	0
WWP1	11059	broad.mit.edu	37	8	87443885	87443885	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr8:87443885G>C	uc003ydt.2	+	14	1794	c.1514G>C	c.(1513-1515)AGA>ACA	p.R505T	WWP1_uc010mai.2_Missense_Mutation_p.R281T	NM_007013	NP_008944	Q9H0M0	WWP1_HUMAN	WW domain containing E3 ubiquitin protein ligase	505	WW 4.				central nervous system development|entry of virus into host cell|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|signal transduction	cytoplasm|nucleus|plasma membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			lung(1)|liver(1)	2						TGGGAAATTAGATATACTCGT	0.368													3	68	---	---	---	---	0	0	0.004672	0	0
MTBP	27085	broad.mit.edu	37	8	121457748	121457748	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr8:121457748G>A	uc003ypc.1	+	1	83	c.38G>A	c.(37-39)GGA>GAA	p.G13E	MRPL13_uc003ypa.2_5'Flank|MRPL13_uc010mdf.2_5'Flank|MTBP_uc003ypb.1_Missense_Mutation_p.G13E|MTBP_uc011lie.1_RNA	NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	13					cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TGGGGGGAAGGAAAATTCCCG	0.582													11	89	---	---	---	---	0	0	0.080935	0	0
TNNI3K	51086	broad.mit.edu	37	1	74665386	74665397	+	In_Frame_Del	DEL	GCAATAACAGCG	-	-	rs146866661	by1000genomes	TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr1:74665386_74665397delGCAATAACAGCG	uc001dge.1	+	2	137_148	c.121_132delGCAATAACAGCG	c.(121-132)GCAATAACAGCGdel	p.AITA41del	LRRIQ3_uc001dfy.3_5'Flank|LRRIQ3_uc001dfz.3_5'Flank|TNNI3K_uc001dgc.1_In_Frame_Del_p.AITA41del|TNNI3K_uc001dgd.2_In_Frame_Del_p.AITA41del|FPGT_uc010oqt.1_5'UTR|FPGT_uc010oqu.1_In_Frame_Del_p.AITA41del|FPGT_uc001dgb.1_In_Frame_Del_p.AITA41del|FPGT_uc010oqv.1_In_Frame_Del_p.AITA41del	NM_001112808	NP_001106279	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform a	Error:Variant_position_missing_in_Q59H18_after_alignment						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						GGACATAGTTGCAATAACAGCGGCTGATGAAA	0.392													15	63	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	30978028	30978029	+	IGR	DEL	TG	-	-			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr10:30978028_30978029delTG								LYZL2 (59381 upstream) : ZNF438 (155538 downstream)																							ACGTGTGAAATGTGTGTGTGTG	0.470													2	4	---	---	---	---					
MICALCL	84953	broad.mit.edu	37	11	12316384	12316389	+	In_Frame_Del	DEL	CTCCTA	-	-	rs3812754	byFrequency	TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr11:12316384_12316389delCTCCTA	uc001mkg.1	+	3	1697_1702	c.1406_1411delCTCCTA	c.(1405-1413)CCTCCTACA>CCA	p.PT470del		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	470_471					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		cctcctcctcctcctACAGCGGGAGG	0.432													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	9555195	9555196	+	IGR	INS	-	C	C	rs140281398	by1000genomes	TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr12:9555195_9555196insC								LOC642846 (88511 upstream) : DDX12 (15092 downstream)																							AAGCCCCTCTTCCCCCCCTGGC	0.584													6	2	---	---	---	---					
COMMD6	170622	broad.mit.edu	37	13	76112127	76112127	+	5'Flank	DEL	A	-	-			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr13:76112127delA	uc001vjo.1	-						COMMD6_uc001vjn.1_5'Flank|COMMD6_uc010aet.1_5'Flank|COMMD6_uc001vjp.1_Intron	NM_203495	NP_987091	Q7Z4G1	COMD6_HUMAN	COMM domain containing 6 isoform b							cytoplasm|nucleus	protein binding				0		Breast(118;0.0979)|Prostate(6;0.122)		GBM - Glioblastoma multiforme(99;0.0104)		ACATTGAGCTAAAAGAAAATT	0.383													6	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	3131445	3131446	+	IGR	DEL	AC	-	-	rs66993077		TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr19:3131445_3131446delAC								GNA11 (9993 upstream) : GNA15 (4745 downstream)																							aaaaaaaaaaacaaaaaaaaaa	0.347													8	3	---	---	---	---					
TGOLN2	10618	broad.mit.edu	37	2	85552043	85552043	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr2:85552043delG	uc010fgd.1	-	3	1592	c.1303delC	c.(1303-1305)CAGfs	p.Q435fs	TGOLN2_uc002soz.2_Frame_Shift_Del_p.Q435fs|TGOLN2_uc002spa.2_RNA|TGOLN2_uc002spb.2_Frame_Shift_Del_p.Q377fs|TGOLN2_uc002spc.1_Frame_Shift_Del_p.Q435fs	NM_006464	NP_006455	O43493	TGON2_HUMAN	trans-golgi network protein 2	435	Cytoplasmic (Potential).					integral to membrane|nucleus|plasma membrane|trans-Golgi network|transport vesicle	protein binding				0						CTTACCTTCTGGTCCAAACGT	0.502													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133020566	133020567	+	IGR	INS	-	A	A	rs139323176		TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr2:133020566_133020567insA								NCRNA00164 (5024 upstream) : GPR39 (153580 downstream)																							CTTATGCCTATACTCTATTAGG	0.396													8	92	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	16909977	16909981	+	IGR	DEL	CAAAA	-	-	rs111736616		TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr22:16909977_16909981delCAAAA								OR11H1 (460173 upstream) : CCT8L2 (161667 downstream)																							ATGGCTCTGTCAAAATAAACAAAAT	0.322													5	10	---	---	---	---					
MIR567	693152	broad.mit.edu	37	3	111831724	111831724	+	RNA	DEL	A	-	-			TCGA-ET-A3BV-01A-11D-A19J-08	TCGA-ET-A3BV-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	a91d8c86-def8-41d7-b05e-d94b9c9303ac	21a53d88-27f7-4d6a-8667-cdb3580062eb	g.chr3:111831724delA	hsa-mir-567|MI0003573	+			c.77delA			C3orf52_uc003dyq.3_Intron|C3orf52_uc011bhs.1_Intron|C3orf52_uc011bht.1_Intron|C3orf52_uc003dyr.1_Intron																	0						ATGCAAAACTAAAAAAAAAAA	0.323													4	8	---	---	---	---					
