Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
BTAF1	9044	broad.mit.edu	37	10	93748982	93748982	+	Silent	SNP	T	C	C			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr10:93748982T>C	uc001khr.2	+	20	2597	c.2499T>C	c.(2497-2499)AGT>AGC	p.S833S	BTAF1_uc001khs.1_Silent_p.S503S|BTAF1_uc001kht.1_Silent_p.S271S	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	833	HEAT 5.				negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				AGTTAGATAGTAAACGACAGC	0.378000													23	44	---	---	---	---	0	0	0.639603	0	0
QSER1	79832	broad.mit.edu	37	11	32953853	32953853	+	Missense_Mutation	SNP	T	G	G			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr11:32953853T>G	uc001mty.2	+	4	929	c.662T>G	c.(661-663)GTA>GGA	p.V221G	QSER1_uc001mtz.1_Missense_Mutation_p.V221G|QSER1_uc001mua.2_5'Flank	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	221	Ser-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					AATTCAAGTGTAGTTAATTTT	0.438000													9	37	---	---	---	---	0	0	0.307466	0	0
CCDC62	84660	broad.mit.edu	37	12	123276650	123276650	+	Missense_Mutation	SNP	G	T	T			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr12:123276650G>T	uc001udc.2	+	6	899	c.754G>T	c.(754-756)GAT>TAT	p.D252Y	CCDC62_uc010tah.1_RNA|CCDC62_uc001udf.2_Missense_Mutation_p.D252Y|CCDC62_uc001ude.2_Intron	NM_201435	NP_958843	Q6P9F0	CCD62_HUMAN	coiled-coil domain containing 62 isoform b	252	Potential.					cytoplasm|nucleus				ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.51e-06)|Epithelial(86;2.65e-05)|BRCA - Breast invasive adenocarcinoma(302;0.206)		TTGCCTGCACGATGAATTGCT	0.393000													17	85	---	---	---	---	7.05477e-17	7.9954e-17	0.520397	1	0
TSHR	7253	broad.mit.edu	37	14	81609809	81609809	+	Silent	SNP	C	A	A			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr14:81609809C>A	uc001xvd.1	+	10	1563	c.1407C>A	c.(1405-1407)CTC>CTA	p.L469L		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	469	Helical; Name=2; (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	ACCTGCTCCTCATCGCCTCTG	0.537000			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						42	69	---	---	---	---	1.38162e-09	1.51533e-09	0.840704	1	0
LOC645752	645752	broad.mit.edu	37	15	78211648	78211648	+	Missense_Mutation	SNP	A	G	G			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr15:78211648A>G	uc010bky.2	-	11	883	c.119T>C	c.(118-120)CTA>CCA	p.L40P		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CGCCAGGGATAGGGGCTCAGC	0.522000													4	76	---	---	---	---	0	0	0.184627	0	0
KCNAB3	9196	broad.mit.edu	37	17	7829388	7829388	+	Silent	SNP	G	A	A			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr17:7829388G>A	uc002gjm.1	-	5	438	c.438C>T	c.(436-438)AGC>AGT	p.S146S	KCNAB3_uc010vul.1_RNA	NM_004732	NP_004723	O43448	KCAB3_HUMAN	potassium voltage-gated channel, shaker-related	146						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(1)	1		Prostate(122;0.157)				TCCAACCTTTGCTCTTGAGGA	0.478000													11	118	---	---	---	---	0	0	0.387290	0	0
LOC96610	96610	broad.mit.edu	37	22	22664115	22664115	+	RNA	SNP	A	T	T			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr22:22664115A>T	uc011aim.1	+	30		c.1972A>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						TGTTTAATTCAGCCTTGGAAG	0.413000													6	74	---	---	---	---	0	0	0.435327	0	0
GOLGB1	2804	broad.mit.edu	37	3	121415620	121415620	+	Silent	SNP	G	A	A			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr3:121415620G>A	uc003eei.3	-	13	3861	c.3735C>T	c.(3733-3735)GAC>GAT	p.D1245D	GOLGB1_uc010hrc.2_Silent_p.D1250D|GOLGB1_uc003eej.3_Silent_p.D1211D|GOLGB1_uc011bjm.1_Silent_p.D1131D|GOLGB1_uc010hrd.1_Silent_p.D1209D	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1245	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		GGAGTTTTCCGTCTATGGATT	0.438000													21	72	---	---	---	---	0	0	0.592651	0	0
C5orf42	65250	broad.mit.edu	37	5	37176053	37176053	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr5:37176053G>A	uc011cpa.1	-	31	6167	c.5936C>T	c.(5935-5937)ACT>ATT	p.T1979I	C5orf42_uc011coy.1_Missense_Mutation_p.T479I|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.T1054I|C5orf42_uc003jkr.1_Missense_Mutation_p.T12I	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	1979										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			TGATTGAGGAGTGGTATGCCC	0.333000													8	159	---	---	---	---	0	0	0.278610	0	0
ZNF251	90987	broad.mit.edu	37	8	145947459	145947459	+	Missense_Mutation	SNP	G	C	C			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr8:145947459G>C	uc003zdv.3	-	5	1842	c.1586C>G	c.(1585-1587)TCC>TGC	p.S529C		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	529					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		TGTGAGGCTGGAGCCATGAAC	0.522000													3	59	---	---	---	---	0	0	0.115264	0	0
LRSAM1	90678	broad.mit.edu	37	9	130224635	130224635	+	Missense_Mutation	SNP	C	T	T			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr9:130224635C>T	uc004brb.1	+	9	856	c.511C>T	c.(511-513)CAC>TAC	p.H171Y	LRSAM1_uc010mxk.1_Missense_Mutation_p.H171Y|LRSAM1_uc004brc.1_Missense_Mutation_p.H171Y|LRSAM1_uc004brd.1_Missense_Mutation_p.H171Y	NM_001005373	NP_001005373	Q6UWE0	LRSM1_HUMAN	leucine rich repeat and sterile alpha motif	171	LRR 6.				negative regulation of endocytosis|non-lytic virus budding|protein autoubiquitination|protein catabolic process|protein polyubiquitination|protein transport|ubiquitin-dependent endocytosis	cytoplasm|extracellular region|membrane part	hormone activity|ubiquitin-protein ligase activity|zinc ion binding				0						GATGCTGGCTCACGTTCGAAC	0.577000													14	52	---	---	---	---	0	0	0.457914	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070139	141070139	+	Missense_Mutation	SNP	C	T	T	rs143443709	by1000genomes	TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr9:141070139C>T	uc004com.2	+	3	298	c.37C>T	c.(37-39)CTC>TTC	p.L13F	TUBBP5_uc010ncq.2_Missense_Mutation_p.L127F					RecName: Full=Putative tubulin beta-4q chain;												0						CGGGCAGGTCCTCAGGCCAGA	0.667000													5	74	---	---	---	---	0	0	0.278610	0	0
SH3KBP1	30011	broad.mit.edu	37	X	19560130	19560130	+	Missense_Mutation	SNP	G	A	A			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chrX:19560130G>A	uc004czm.2	-	16	2121	c.1805C>T	c.(1804-1806)GCG>GTG	p.A602V	SH3KBP1_uc011mje.1_Missense_Mutation_p.A341V|SH3KBP1_uc011mjf.1_Missense_Mutation_p.A364V|SH3KBP1_uc004czl.2_Missense_Mutation_p.A565V|SH3KBP1_uc010nfm.2_Missense_Mutation_p.A47V	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	602	Potential.				apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						GCTGCTGGCCGCAGGCTCCAT	0.627000													43	75	---	---	---	---	0	0	0.859065	0	0
GPR112	139378	broad.mit.edu	37	X	135427194	135427194	+	Silent	SNP	C	T	T			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chrX:135427194C>T	uc004ezu.1	+	6	1620	c.1329C>T	c.(1327-1329)GCC>GCT	p.A443A	GPR112_uc010nsb.1_Silent_p.A238A|GPR112_uc010nsc.1_Silent_p.A210A	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	443	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTACAGCTGCCGGAACTGTAC	0.478000													23	66	---	---	---	---	0	0	0.608945	0	0
Unknown	0	broad.mit.edu	37	10	30450743	30450744	+	IGR	INS	-	T	T	rs148421389		TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr10:30450743_30450744insT								KIAA1462 (46323 upstream) : MTPAP (147987 downstream)																							ATAGTTCCGGGttttttttttt	0.307													3	6	---	---	---	---					
MIR606	693191	broad.mit.edu	37	10	77312184	77312184	+	5'Flank	DEL	C	-	-	rs1367290		TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr10:77312184delC	hsa-mir-606|MI0003619	+																							0						ttttttttttcccccccctct	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	99068839	99068840	+	IGR	INS	-	T	T			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr10:99068839_99068840insT								ARHGAP19 (16426 upstream) : FRAT1 (10182 downstream)																							AAAAAAGTTTGTTTTTTTTTTT	0.173													3	4	---	---	---	---					
HNRNPC	3183	broad.mit.edu	37	14	21679622	21679623	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr14:21679622_21679623delAG	uc001vzy.2	-	8	1023_1024	c.779_780delCT	c.(778-780)TCTfs	p.S260fs	HNRNPC_uc001vzw.2_Frame_Shift_Del_p.S247fs|HNRNPC_uc001wad.2_Frame_Shift_Del_p.S180fs|HNRNPC_uc001vzx.2_RNA|HNRNPC_uc001vzz.2_Frame_Shift_Del_p.S247fs|HNRNPC_uc001waa.2_Frame_Shift_Del_p.S260fs|HNRNPC_uc010ail.2_Frame_Shift_Del_p.S260fs|HNRNPC_uc010tlq.1_RNA|HNRNPC_uc001wab.2_Frame_Shift_Del_p.S246fs|HNRNPC_uc001wac.2_Frame_Shift_Del_p.S204fs|HNRNPC_uc010tlr.1_Frame_Shift_Del_p.S125fs|HNRNPC_uc001waf.2_Frame_Shift_Del_p.S247fs|HNRNPC_uc001wae.2_Frame_Shift_Del_p.S247fs	NM_031314	NP_112604	P07910	HNRPC_HUMAN	heterogeneous nuclear ribonucleoprotein C	260	Asp/Glu-rich (acidic).					catalytic step 2 spliceosome|nucleoplasm	identical protein binding|nucleotide binding|RNA binding				0	all_cancers(95;0.00176)		Epithelial(56;1.08e-06)|all cancers(55;8.95e-06)	GBM - Glioblastoma multiforme(265;0.00783)		CCTCCTCAGCAGAGTCATCTGC	0.510													25	69	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	31177260	31177261	+	IGR	DEL	CA	-	-	rs151222801		TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr16:31177260_31177261delCA								PRSS36 (15845 upstream) : FUS (14192 downstream)																							ACAGTTTTCTCaaaaaaaaaaa	0.292													2	4	---	---	---	---					
LRRC37B	114659	broad.mit.edu	37	17	30334977	30334979	+	5'Flank	DEL	GAG	-	-			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr17:30334977_30334979delGAG	uc010wbx.1	+							NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor							integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				CTACGAGAGCgaggaggaggagt	0.232													2	4	---	---	---	---					
PPM1E	22843	broad.mit.edu	37	17	56833644	56833646	+	In_Frame_Del	DEL	GAG	-	-			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr17:56833644_56833646delGAG	uc002iwx.2	+	1	413_415	c.286_288delGAG	c.(286-288)GAGdel	p.E100del	PPM1E_uc010ddd.2_5'UTR	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	100	Glu-rich.|Pro-rich.				protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			ggttgagggtgaggaggaggagg	0.325													2	4	---	---	---	---					
MIR516B1	574490	broad.mit.edu	37	19	54238305	54238306	+	5'Flank	INS	-	T	T	rs11427814		TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr19:54238305_54238306insT	hsa-mir-516b-1|MI0003172	+																							0						GGGTTCTGTGCTTTTTTTTTTT	0.386													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	96517784	96517786	+	IGR	DEL	TAA	-	-	rs113889919		TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr2:96517784_96517786delTAA								TRIM43 (252317 upstream) : LOC729234 (158513 downstream)																							AAAGACATACTAATTATCATAAC	0.291													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	219706425	219706426	+	IGR	INS	-	A	A			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr2:219706425_219706426insA								PRKAG3 (9913 upstream) : WNT6 (18120 downstream)																							TCCACAGCCACAAAAAAAAAGA	0.515													8	161	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	27839435	27839437	+	IGR	DEL	TTT	-	-			TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr6:27839435_27839437delTTT								HIST1H1B (4076 upstream) : HIST1H3I (187 downstream)																							ATGACATGTCTTTTTTGAGTGAT	0.394													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	57659470	57659471	+	IGR	DEL	TA	-	-	rs79867563	by1000genomes	TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr7:57659470_57659471delTA								ZNF716 (126205 upstream) : None (None downstream)																							GCGTTGATCTTACAGTCTGGTG	0.371													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	131438392	131438392	+	IGR	DEL	T	-	-	rs144638874		TCGA-ET-A3DS-01A-11D-A19J-08	TCGA-ET-A3DS-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	e02fad9d-940c-45dc-829b-39c38d2f6f76	0ed6611d-ccc7-4403-a1b0-6e56cd147e8f	g.chr7:131438392delT								PODXL (197016 upstream) : PLXNA4 (369700 downstream)																							GCAAGCTTTCTTTTTTTTTTT	0.174													2	4	---	---	---	---					
