Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIF1B	23095	broad.mit.edu	37	1	10394681	10394681	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr1:10394681G>A	uc001aqx.3	+	28	3230	c.3028G>A	c.(3028-3030)GTA>ATA	p.V1010I	KIF1B_uc001aqw.3_Missense_Mutation_p.V964I|KIF1B_uc001aqy.2_Missense_Mutation_p.V984I|KIF1B_uc001aqz.2_Missense_Mutation_p.V1010I|KIF1B_uc001ara.2_Missense_Mutation_p.V970I|KIF1B_uc001arb.2_Missense_Mutation_p.V996I	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1010					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		GCGTGTGGCTGTACAGGCCAT	0.517000													4	91	---	---	---	---	0	0	1	0	0
CROCCL2	114819	broad.mit.edu	37	1	16812919	16812919	+	Splice_Site	SNP	A	T	T	rs148768002	by1000genomes	TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr1:16812919A>T	uc001ayt.2	-	6		c.1391_splice	c.e6+1		CROCCL2_uc001ays.2_Intron	NR_023386				Homo sapiens mRNA for KIAA1922 protein, partial cds.												0						CCAGGGACCCACCTGGCACTG	0.607000													3	24	---	---	---	---	0	0	1	0	0
NEXN	91624	broad.mit.edu	37	1	78383724	78383724	+	Splice_Site	SNP	G	A	A			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr1:78383724G>A	uc001dic.3	+	4	595	c.298_splice	c.e4+1	p.G100_splice	NEXN_uc001dia.3_Splice_Site_p.G100_splice|NEXN_uc009wcb.1_Splice_Site_p.G36_splice|NEXN_uc001dib.3_Splice_Site_p.G36_splice|NEXN_uc001did.1_Splice_Site_p.G24_splice|NEXN_uc001dif.1_5'Flank	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)						regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		AAATTAACAGGTAAGAAGCTT	0.284000													3	64	---	---	---	---	0	0	1	0	0
MARCH8	220972	broad.mit.edu	37	10	45954618	45954618	+	Missense_Mutation	SNP	T	C	C			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr10:45954618T>C	uc001jci.1	-	6	760	c.521A>G	c.(520-522)TAT>TGT	p.Y174C	MARCH8_uc001jch.2_Missense_Mutation_p.Y456C|MARCH8_uc001jcj.1_Missense_Mutation_p.Y174C|MARCH8_uc001jck.1_Missense_Mutation_p.Y174C|uc001jcf.2_5'Flank|MARCH8_uc001jcg.1_Missense_Mutation_p.Y43C	NM_001002266	NP_001002266	Q5T0T0	MARH8_HUMAN	cellular modulator of immune recognition isoform	174	Helical; (Potential).					cytoplasmic vesicle membrane|early endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding				0						AATGAGCACATACAAGGACCA	0.552000													11	172	---	---	---	---	0	0	1	0	0
WDR11	55717	broad.mit.edu	37	10	122619684	122619684	+	Missense_Mutation	SNP	A	G	G			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr10:122619684A>G	uc010qtf.1	+	4	654	c.416A>G	c.(415-417)AAT>AGT	p.N139S	WDR11_uc010qte.1_Intron|WDR11_uc001lfd.1_5'UTR	NM_018117	NP_060587	Q9BZH6	WDR11_HUMAN	bromodomain and WD repeat domain containing 2	139	WD 2.					integral to membrane					0						CACCCGCCAAATTACATTGTG	0.428000													4	85	---	---	---	---	0	0	1	0	0
CD6	923	broad.mit.edu	37	11	60777117	60777117	+	Silent	SNP	C	T	T			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr11:60777117C>T	uc001nqq.2	+	5	1078	c.855C>T	c.(853-855)GTC>GTT	p.V285V	CD6_uc009yni.2_Intron|CD6_uc009ynj.2_Intron|CD6_uc001nqp.2_Silent_p.V285V|CD6_uc001nqr.2_Silent_p.V285V|CD6_uc001nqs.2_RNA|CD6_uc001nqt.2_Silent_p.V285V	NM_006725	NP_006716	P30203	CD6_HUMAN	CD6 molecule precursor	285	SRCR 3.|Extracellular (Potential).				cell adhesion	cell surface|integral to plasma membrane	scavenger receptor activity			pancreas(1)	1						TCCGAGGGGTCTGGAACACAG	0.652000													8	71	---	---	---	---	0	0	1	0	0
MARK2	2011	broad.mit.edu	37	11	63668346	63668346	+	Missense_Mutation	SNP	G	A	A	rs146234903		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr11:63668346G>A	uc001nxw.2	+	10	1562	c.983G>A	c.(982-984)CGG>CAG	p.R328Q	MARK2_uc001nxx.2_Missense_Mutation_p.R328Q|MARK2_uc001nxy.2_Missense_Mutation_p.R328Q|MARK2_uc001nxv.3_Missense_Mutation_p.R328Q|MARK2_uc001nxz.3_Missense_Mutation_p.R295Q|MARK2_uc009yoy.2_Missense_Mutation_p.R295Q	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	328	UBA.				cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						GACCCCCGGCGGACAGGTGAG	0.547000													4	188	---	---	---	---	0	0	1	0	0
IGDCC4	57722	broad.mit.edu	37	15	65676658	65676658	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr15:65676658G>A	uc002aou.1	-	20	3652	c.3442C>T	c.(3442-3444)CTC>TTC	p.L1148F	IGDCC4_uc002aot.1_Missense_Mutation_p.L736F	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	1148	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						TGGAGATGGAGGTCAGGGTTC	0.607000													3	69	---	---	---	---	0	0	1	0	0
DECR2	26063	broad.mit.edu	37	16	461481	461481	+	Missense_Mutation	SNP	C	T	T			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr16:461481C>T	uc002chb.2	+	8	888	c.782C>T	c.(781-783)ACG>ATG	p.T261M	DECR2_uc002chc.2_Missense_Mutation_p.T177M|DECR2_uc010bqv.2_Missense_Mutation_p.T177M|DECR2_uc002chd.2_Missense_Mutation_p.T177M|DECR2_uc002che.1_RNA	NM_020664	NP_065715	Q9NUI1	DECR2_HUMAN	2,4-dienoyl CoA reductase 2	261						peroxisome	2,4-dienoyl-CoA reductase (NADPH) activity|binding				0		Hepatocellular(16;0.00015)				TCCTACGTGACGGGGGCCGTG	0.632000													24	62	---	---	---	---	0	0	1	0	0
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	Missense_Mutation	SNP	T	G	G			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr16:32890622T>G	uc002edh.1	-	5	440	c.264A>C	c.(262-264)AAA>AAC	p.K88N	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CGTTGGTGTTTTTGTAGACCA	0.512000													6	41	---	---	---	---	0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29054111	29054111	+	Missense_Mutation	SNP	G	A	A			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr18:29054111G>A	uc002kws.2	+	15	2238	c.2129G>A	c.(2128-2130)GGC>GAC	p.G710D	DSG3_uc002kwt.2_5'UTR	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	710	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TATGCCAGAGGCACAGCGGTG	0.443000													3	113	---	---	---	---	0	0	1	0	0
ZNF324B	388569	broad.mit.edu	37	19	58966764	58966764	+	Silent	SNP	G	C	C			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr19:58966764G>C	uc002qsv.1	+	4	560	c.453G>C	c.(451-453)TCG>TCC	p.S151S	ZNF324B_uc002qsu.1_Silent_p.S141S|ZNF324B_uc010euq.1_Silent_p.S151S	NM_207395	NP_997278	Q6AW86	Z324B_HUMAN	zinc finger protein 324B	151					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0164)|Lung(386;0.179)		TGCTAGGCTCGCGCAGTGACC	0.632000													40	65	---	---	---	---	0	0	1	0	0
HPCAL1	3241	broad.mit.edu	37	2	10560174	10560174	+	Silent	SNP	G	A	A			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr2:10560174G>A	uc002raj.2	+	3	665	c.291G>A	c.(289-291)CTG>CTA	p.L97L	HPCAL1_uc002rak.2_Silent_p.L97L|HPCAL1_uc002ral.2_Silent_p.L97L|HPCAL1_uc010exe.2_RNA|HPCAL1_uc010exf.2_Silent_p.L97L	NM_002149	NP_002140	P37235	HPCL1_HUMAN	hippocalcin-like 1	97	EF-hand 3.						calcium ion binding			pancreas(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.214)		GGGGCAAGCTGGAGCAGAAGC	0.637000													3	78	---	---	---	---	0	0	1	0	0
SRP72	6731	broad.mit.edu	37	4	57340448	57340448	+	Missense_Mutation	SNP	G	C	C			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr4:57340448G>C	uc003hbv.2	+	5	541	c.501G>C	c.(499-501)GAG>GAC	p.E167D	SRP72_uc010ihe.2_Missense_Mutation_p.E167D|SRP72_uc003hbw.1_5'UTR	NM_006947	NP_008878	O76094	SRP72_HUMAN	signal recognition particle 72kDa	167					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|nucleolus|plasma membrane|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding|signal recognition particle binding			ovary(1)	1	Glioma(25;0.08)|all_neural(26;0.101)					CCTGACAGGAGAACCTGGGCC	0.448000													6	187	---	---	---	---	0	0	1	0	0
BDP1	55814	broad.mit.edu	37	5	70858315	70858315	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr5:70858315C>T	uc003kbp.1	+	38	7974	c.7711C>T	c.(7711-7713)CAA>TAA	p.Q2571*	BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2571					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TATTACTACTCAATCTGAGAA	0.348000													17	82	---	---	---	---	0	0	1	0	0
SMPD2	6610	broad.mit.edu	37	6	109763769	109763769	+	Missense_Mutation	SNP	G	C	C			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr6:109763769G>C	uc003pti.2	+	6	826	c.432G>C	c.(430-432)CAG>CAC	p.Q144H	PPIL6_uc003ptg.3_5'Flank|PPIL6_uc010kdo.2_5'Flank|PPIL6_uc010kdp.2_5'Flank|PPIL6_uc003pth.1_5'Flank	NM_003080	NP_003071	O60906	NSMA_HUMAN	sphingomyelin phosphodiesterase 2, neutral	144					induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|sphingomyelin metabolic process	integral to plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity				0		all_cancers(87;1.1e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000144)|all_lung(197;0.0221)|Colorectal(196;0.0488)|Lung SC(18;0.0548)		Epithelial(106;0.0137)|all cancers(137;0.0188)|OV - Ovarian serous cystadenocarcinoma(136;0.0228)|BRCA - Breast invasive adenocarcinoma(108;0.0566)		ACAATCGACAGAAGGACATCT	0.522000													4	176	---	---	---	---	0	0	1	0	0
PRSS55	203074	broad.mit.edu	37	8	10390524	10390524	+	Missense_Mutation	SNP	C	T	T			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr8:10390524C>T	uc003wta.2	+	4	722	c.707C>T	c.(706-708)GCC>GTC	p.A236V	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	236	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						ATGCTGTGTGCCGGATACAAG	0.483000													3	76	---	---	---	---	0	0	1	0	0
RNF128	79589	broad.mit.edu	37	X	105970419	105970419	+	Silent	SNP	G	T	T			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chrX:105970419G>T	uc004eml.2	+	1	526	c.276G>T	c.(274-276)GCG>GCT	p.A92A	RNF128_uc004emk.2_Intron	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	92	PA.					endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						GGCCCGGGGCGCTTAACGCCT	0.677000													6	27	---	---	---	---	0.000157383	0.000157383	1	1	0
FAM43B	163933	broad.mit.edu	37	1	20880268	20880270	+	In_Frame_Del	DEL	GAG	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr1:20880268_20880270delGAG	uc001bdj.2	+	1	1337_1339	c.802_804delGAG	c.(802-804)GAGdel	p.E272del		NM_207334	NP_997217	Q6ZT52	FA43B_HUMAN	family with sequence similarity 43, member B	272											0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00979)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000132)|Kidney(64;0.00016)|GBM - Glioblastoma multiforme(114;0.000399)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.195)		ggaggaggacgaggaggaggagg	0.567													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121484633	121484633	+	IGR	DEL	T	-	-	rs4898120		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr1:121484633delT								LOC647121 (170947 upstream) : None (None downstream)																							agagtttaacttttcttttca	0.000													9	1921	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr10:42385707_42385722delAATGGAATCATCATTA								None (None upstream) : LOC441666 (441593 downstream)																							aatggaatcgaatggaatcatcattaaatggaatca	0.042													9	86	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr10:42400455delT								None (None upstream) : LOC441666 (426860 downstream)																							cttctttgtgttgtgtgtatt	0.000													26	496	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42599986	42599988	+	IGR	DEL	AAT	-	-	rs147442258		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr10:42599986_42599988delAAT								None (None upstream) : LOC441666 (227327 downstream)																							attcgaatgcaatcatcatcgaa	0.000													7	367	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	125015169	125015169	+	IGR	DEL	T	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr10:125015169delT								BUB3 (90283 upstream) : GPR26 (410702 downstream)																							atcaccatcatcacaccacca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	122860403	122860405	+	IGR	DEL	TGG	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr11:122860403_122860405delTGG								BSX (8024 upstream) : LOC341056 (27869 downstream)																							gtggtgatgatggtggtggtggt	0.054													2	4	---	---	---	---					
OAS1	4938	broad.mit.edu	37	12	113345000	113345001	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr12:113345000_113345001delTG	uc001tud.2	+	1	262_263	c.156_157delTG	c.(154-159)CCTGTGfs	p.P52fs	OAS1_uc010syn.1_Frame_Shift_Del_p.P51fs|OAS1_uc010syo.1_Frame_Shift_Del_p.P51fs|OAS1_uc001tub.2_Frame_Shift_Del_p.P52fs|OAS1_uc001tuc.2_Frame_Shift_Del_p.P52fs|OAS1_uc009zwf.2_Frame_Shift_Del_p.P51fs	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	52_53					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						GCTCCTACCCTGTGTGTGTGTC	0.495													7	113	---	---	---	---					
ZNF598	90850	broad.mit.edu	37	16	2049882	2049883	+	In_Frame_Ins	INS	-	TCC	TCC	rs141374045	by1000genomes	TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr16:2049882_2049883insTCC	uc002cof.1	-	11	1682_1683	c.1667_1668insGGA	c.(1666-1668)GAC>GAGGAC	p.555_556insE	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	555_556						intracellular	zinc ion binding			lung(1)|breast(1)	2						CCGGGCCGCCGTCCTCCTCCTC	0.703													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	30419054	30419054	+	IGR	DEL	C	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr17:30419054delC								LRRC37B (38537 upstream) : RHOT1 (50419 downstream)																							ACCACCACCACcacacacaca	0.234													2	4	---	---	---	---					
COL1A1	1277	broad.mit.edu	37	17	48276617	48276617	+	Frame_Shift_Del	DEL	G	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr17:48276617delG	uc002iqm.2	-	5	567	c.441delC	c.(439-441)CCCfs	p.P147fs		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	147					axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	cgggaggtccggggggtccgg	0.488			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27731986	27731989	+	IGR	DEL	TGTT	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr19:27731986_27731989delTGTT								None (None upstream) : LOC148189 (549413 downstream)																							ggaaacactctgtttgtaaagtct	0.000													7	340	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732326	27732329	+	IGR	DEL	TGTT	-	-	rs74211006		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr19:27732326_27732329delTGTT								None (None upstream) : LOC148189 (549073 downstream)																							ggaaacactctgtttgtaaaatct	0.000													8	160	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	1000443	1000446	+	IGR	DEL	TTCA	-	-	rs112800484		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr20:1000443_1000446delTTCA								RSPO4 (17539 upstream) : PSMF1 (93460 downstream)																							caccctttctttcattcactcatc	0.015													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	98031434	98031434	+	IGR	DEL	A	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr3:98031434delA								OR5H2 (28758 upstream) : OR5K4 (41264 downstream)																							TTACAATCTTAAAAAAAAAAG	0.333													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49107447	49107447	+	IGR	DEL	T	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr4:49107447delT								CWH43 (43354 upstream) : None (None downstream)																							ttccattccattccattgcac	0.000													9	89	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	32441391	32441392	+	IGR	INS	-	T	T	rs28986194		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr6:32441391_32441392insT								HLA-DRA (28570 upstream) : HLA-DRB1 (43771 downstream)																							AAATTATGGGGAGGAGGTTACT	0.505													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	61968770	61968770	+	IGR	DEL	G	-	-	rs61713499		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr7:61968770delG								None (None upstream) : LOC643955 (782902 downstream)																							ttgaaacactgtttttgcgga	0.000													16	100	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	94324275	94324278	+	IGR	DEL	TTTT	-	-	rs150996407		TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr7:94324275_94324278delTTTT								PEG10 (25271 upstream) : PPP1R9A (212671 downstream)																							ttctttcttctttttttttttttt	0.176													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	64382847	64382849	+	IGR	DEL	AGC	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chr8:64382847_64382849delAGC								YTHDF3 (257502 upstream) : MIR124-2 (908857 downstream)																							GAGCACCTGAagcagcagcagca	0.433													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13483364	13483364	+	IGR	DEL	T	-	-			TCGA-FK-A3SG-01A-11D-A22D-08	TCGA-FK-A3SG-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	990ad7fa-0593-423d-b23d-e97adece44c5	2d4134fe-7a6c-40bf-b28a-dace85f849a5	g.chrY:13483364delT								None (None upstream) : None (None downstream)																							tctgtcacaattcccctttag	0.000													24	99	---	---	---	---					
