Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
DNAJC11	55735	broad.mit.edu	37	1	6696245	6696245	+	Missense_Mutation	SNP	T	C	C			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr1:6696245T>C	uc001aof.2	-	15	1692	c.1586A>G	c.(1585-1587)TAT>TGT	p.Y529C	DNAJC11_uc010nzt.1_Intron|DNAJC11_uc001aog.2_Missense_Mutation_p.Y477C|DNAJC11_uc010nzu.1_Missense_Mutation_p.Y439C	NM_018198	NP_060668	Q9NVH1	DJC11_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 11	529					protein folding		heat shock protein binding|unfolded protein binding			ovary(1)|skin(1)	2	Ovarian(185;0.0265)|all_lung(157;0.154)	all_cancers(23;1.97e-27)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;2.34e-07)|COAD - Colon adenocarcinoma(227;2.05e-05)|Kidney(185;7.67e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000639)|KIRC - Kidney renal clear cell carcinoma(229;0.00128)|STAD - Stomach adenocarcinoma(132;0.00179)|READ - Rectum adenocarcinoma(331;0.0649)		CCGGAACTGATAGAGCACTTT	0.547000													22	55	---	---	---	---	0	0	0.016522	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			62	78	---	---	---	---	0	0	0.014410	0	0
SAAL1	113174	broad.mit.edu	37	11	18111042	18111042	+	Missense_Mutation	SNP	T	G	G			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr11:18111042T>G	uc001mnq.2	-	7	655	c.605A>C	c.(604-606)AAG>ACG	p.K202T	SAAL1_uc001mnr.2_Missense_Mutation_p.K202T|SAAL1_uc001mns.2_RNA|SAAL1_uc009yhf.2_Missense_Mutation_p.K202T	NM_138421	NP_612430	Q96ER3	SAAL1_HUMAN	serum amyloid A-like 1	202					acute-phase response	extracellular region	binding				0						CTCCCCCACCTTCACCAGCAA	0.418000													11	29	---	---	---	---	0	0	0.010729	0	0
LTBP3	4054	broad.mit.edu	37	11	65319868	65319868	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr11:65319868G>A	uc001oej.2	-	7	1465	c.1196C>T	c.(1195-1197)CCG>CTG	p.P399L	LTBP3_uc010roi.1_Missense_Mutation_p.P282L|LTBP3_uc001oei.2_Missense_Mutation_p.P399L|LTBP3_uc010roj.1_Missense_Mutation_p.P100L|LTBP3_uc010rok.1_Missense_Mutation_p.P310L	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	399						extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						CTTCTCCTCCGGTTTGTCTGC	0.667000											OREG0021081	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	68	---	---	---	---	0	0	0.014410	0	0
HEXA	3073	broad.mit.edu	37	15	72640388	72640388	+	Splice_Site	SNP	C	T	T	rs76173977	byFrequency	TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr15:72640388C>T	uc002aun.3	-	9	1280	c.1073_splice	c.e9+1	p.T358_splice	uc002aug.2_Intron|CELF6_uc002auk.3_Intron|HEXA_uc010ukn.1_Splice_Site_p.T369_splice|HEXA_uc002auo.3_Splice_Site_p.T221_splice|HEXA_uc010bix.2_Splice_Site_p.T358_splice|HEXA_uc010biy.2_Splice_Site_p.T221_splice|HEXA_uc010uko.1_Splice_Site_p.T184_splice|HEXA_uc010biz.1_Splice_Site	NM_000520	NP_000511	P06865	HEXA_HUMAN	hexosaminidase A preproprotein						cell death	lysosome	beta-N-acetylhexosaminidase activity|cation binding|protein heterodimerization activity			ovary(3)|upper_aerodigestive_tract(1)	4						TCCTTCCTCACGTCTGGATGT	0.577000													8	22	---	---	---	---	0	0	0.006214	0	0
OTOA	146183	broad.mit.edu	37	16	21726416	21726416	+	Silent	SNP	C	T	T			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr16:21726416C>T	uc002djh.2	+	13	1432	c.1431C>T	c.(1429-1431)GCC>GCT	p.A477A	uc002diq.3_Intron|OTOA_uc010vbj.1_Silent_p.A398A|OTOA_uc002dji.2_Silent_p.A153A|OTOA_uc010vbk.1_Silent_p.A125A	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	491					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		TGAGAAGTGCCGTCTCCCAGT	0.577000													8	355	---	---	---	---	0	0	0.013537	0	0
SETD6	79918	broad.mit.edu	37	16	58549787	58549787	+	Silent	SNP	G	A	A			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr16:58549787G>A	uc002ens.2	+	2	179	c.120G>A	c.(118-120)GTG>GTA	p.V40V	SETD6_uc010cdl.2_Silent_p.V40V|SETD6_uc002enr.2_Intron|SETD6_uc010cdm.2_Intron|SETD6_uc010vij.1_Intron	NM_001160305	NP_001153777	Q8TBK2	SETD6_HUMAN	SET domain containing 6 isoform a	40	SET.				negative regulation of NF-kappaB transcription factor activity|peptidyl-lysine monomethylation|regulation of inflammatory response	nucleus	NF-kappaB binding|protein-lysine N-methyltransferase activity			ovary(1)	1						GTCCCAAGGTGAGCGAGCGAg	0.592000													4	13	---	---	---	---	0	0	0.009096	0	0
SLC43A2	124935	broad.mit.edu	37	17	1479938	1479938	+	Missense_Mutation	SNP	G	A	A			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr17:1479938G>A	uc002fsv.2	-	13	1590	c.1501C>T	c.(1501-1503)CCG>TCG	p.P501S	SLC43A2_uc002fsu.2_Missense_Mutation_p.P505S	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	501	Helical; (Potential).				cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)		AGAAACAGCGGCTGCTGCAGA	0.642000													3	59	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	17	21731144	21731144	+	Missense_Mutation	SNP	T	G	G	rs149119138	by1000genomes	TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr17:21731144T>G	uc002gyy.3	+	2	571	c.446T>G	c.(445-447)CTG>CGG	p.L149R						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;																		GTCCTGCGTCTGAGAGGTGGT	0.542000													4	79	---	---	---	---	0	0	0.009096	0	0
SERTAD3	29946	broad.mit.edu	37	19	40947564	40947564	+	Missense_Mutation	SNP	A	C	C			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr19:40947564A>C	uc002onu.3	-	2	702	c.424T>G	c.(424-426)TTG>GTG	p.L142V	SERTAD3_uc002onv.3_Missense_Mutation_p.L142V	NM_013368	NP_037500	Q9UJW9	SRTD3_HUMAN	RPA-binding trans-activator	142					negative regulation of cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GAGTCCCCCAAGTACCGGGAG	0.572000													27	44	---	---	---	---	0	0	0.010818	0	0
ZNF628	89887	broad.mit.edu	37	19	55995137	55995137	+	Silent	SNP	A	G	G			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr19:55995137A>G	uc002qld.2	+	3	3130	c.2565A>G	c.(2563-2565)GCA>GCG	p.A855A	NAT14_uc002qle.1_5'Flank	NM_033113	NP_149104	Q5EBL2	ZN628_HUMAN	zinc finger protein 628	855	4.|4 X approximate tandem repeats.					nucleus	DNA binding|zinc ion binding				0	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0531)		TCCAGCCAGCACAGGAGGTGA	0.642000													4	110	---	---	---	---	0	0	0.009096	0	0
ZNF628	89887	broad.mit.edu	37	19	55995152	55995152	+	Silent	SNP	G	A	A			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr19:55995152G>A	uc002qld.2	+	3	3145	c.2580G>A	c.(2578-2580)ACG>ACA	p.T860T	NAT14_uc002qle.1_5'Flank	NM_033113	NP_149104	Q5EBL2	ZN628_HUMAN	zinc finger protein 628	860	4.|4 X approximate tandem repeats.					nucleus	DNA binding|zinc ion binding				0	Breast(117;0.155)		BRCA - Breast invasive adenocarcinoma(297;0.18)|LUSC - Lung squamous cell carcinoma(43;0.193)	GBM - Glioblastoma multiforme(193;0.0531)		AGGTGACCACGGTCCAGCTCC	0.657000													4	93	---	---	---	---	0	0	0.009096	0	0
FN1	2335	broad.mit.edu	37	2	216285470	216285470	+	Missense_Mutation	SNP	C	G	G	rs142165052		TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr2:216285470C>G	uc002vfa.2	-	11	1867	c.1601G>C	c.(1600-1602)CGT>CCT	p.R534P	FN1_uc002vfb.2_Missense_Mutation_p.R534P|FN1_uc002vfc.2_Missense_Mutation_p.R534P|FN1_uc002vfd.2_Missense_Mutation_p.R534P|FN1_uc002vfe.2_Missense_Mutation_p.R534P|FN1_uc002vff.2_Missense_Mutation_p.R534P|FN1_uc002vfg.2_Missense_Mutation_p.R534P|FN1_uc002vfh.2_Missense_Mutation_p.R534P|FN1_uc002vfi.2_Missense_Mutation_p.R534P|FN1_uc002vfj.2_Missense_Mutation_p.R534P|FN1_uc002vfl.2_Missense_Mutation_p.R534P	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	534	Collagen-binding.|Fibronectin type-I 8.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCTTCATGACGCTTGTGGAA	0.478000													23	46	---	---	---	---	0	0	0.005443	0	0
FANCD2	2177	broad.mit.edu	37	3	10106101	10106101	+	Missense_Mutation	SNP	T	C	C			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr3:10106101T>C	uc003buw.2	+	22	2087	c.2009T>C	c.(2008-2010)GTT>GCT	p.V670A	FANCD2_uc003bux.1_Missense_Mutation_p.V670A|FANCD2_uc003buy.1_Missense_Mutation_p.V670A|FANCD2_uc010hcw.1_RNA	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	670					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		GACTCCTGTGTTGTTCCGGAA	0.458000			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				28	68	---	---	---	---	0	0	0.014410	0	0
BMP3	651	broad.mit.edu	37	4	81952594	81952594	+	Silent	SNP	G	A	A			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr4:81952594G>A	uc003hmg.3	+	1	476	c.156G>A	c.(154-156)CCG>CCA	p.P52P		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	52					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						AGCTGCAGCCGCAAGACAAGG	0.672000													3	44	---	---	---	---	0	0	0.014758	0	0
NKRF	55922	broad.mit.edu	37	X	118724002	118724002	+	Silent	SNP	G	A	A			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chrX:118724002G>A	uc004erq.2	-	2	2039	c.1386C>T	c.(1384-1386)AAC>AAT	p.N462N	NKRF_uc004err.2_Silent_p.N462N	NM_017544	NP_060014	O15226	NKRF_HUMAN	transcription factor NRF	462					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|double-stranded RNA binding			ovary(1)|central_nervous_system(1)	2						CTGTCATTCGGTTAAACTGAG	0.433000													3	32	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	1	114896051	114896052	+	IGR	INS	-	G	G	rs147181697	by1000genomes	TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr1:114896051_114896052insG								SYT6 (199579 upstream) : TRIM33 (39349 downstream)																							GGGCCAGCTGTGGGGGAGGAGG	0.584													3	4	---	---	---	---					
NBPF14	25832	broad.mit.edu	37	1	148012561	148012562	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr1:148012561_148012562delAT	uc001eqq.2	-	12	1414_1415	c.1397_1398delAT	c.(1396-1398)TATfs	p.Y466fs	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqf.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Frame_Shift_Del_p.Y377fs|NBPF14_uc010pae.1_Frame_Shift_Del_p.Y133fs|NBPF14_uc010paf.1_Frame_Shift_Del_p.Y621fs|NBPF14_uc010pad.1_5'Flank|NBPF14_uc001eqs.1_Intron	NM_015383	NP_056198	Q5TI25	NBPFE_HUMAN	hypothetical protein LOC25832	466	NBPF 5.					cytoplasm				ovary(1)	1	all_hematologic(923;0.032)					AGGAACTTCCATAGGGCTGGCA	0.470													2	4	---	---	---	---					
NMT2	9397	broad.mit.edu	37	10	15210781	15210782	+	5'Flank	INS	-	C	C			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr10:15210781_15210782insC	uc001inz.1	-						NMT2_uc001ioa.1_5'Flank|NMT2_uc009xjo.1_5'Flank	NM_004808	NP_004799	O60551	NMT2_HUMAN	N-myristoyltransferase 2						N-terminal protein myristoylation|protein lipoylation	Golgi apparatus|plasma membrane	glycylpeptide N-tetradecanoyltransferase activity			ovary(1)	1						ccgccctccgtcccgccccgcc	0.193													6	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42672528	42672528	+	IGR	DEL	C	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr10:42672528delC								None (None upstream) : LOC441666 (154787 downstream)																							CGGCTTTTTGCCCCCCCCCCC	0.637													7	12	---	---	---	---					
PPTC7	160760	broad.mit.edu	37	12	111020740	111020742	+	In_Frame_Del	DEL	CGC	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr12:111020740_111020742delCGC	uc001trh.1	-	1	323_325	c.95_97delGCG	c.(94-99)GGCGAC>GAC	p.G32del		NM_139283	NP_644812	Q8NI37	PPTC7_HUMAN	T-cell activation protein phosphatase 2C	32	Gly-rich.						metal ion binding|phosphoprotein phosphatase activity				0						AGTCCGTAGTcgccgccgccgcc	0.611													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	73067715	73067716	+	IGR	INS	-	GAG	GAG	rs149157490	by1000genomes	TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr14:73067715_73067716insGAG								RGS6 (34478 upstream) : DPF3 (18288 downstream)																							aggaggggggagaggaggagga	0.203													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	1308851	1308867	+	IGR	DEL	GCCCCCTCCTCCATCCT	-	-	rs72249435		TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr16:1308851_1308867delGCCCCCTCCTCCATCCT								TPSD1 (357 upstream) : UBE2I (50313 downstream)																							tccatcctgagccccctcctccatcctgccccctcct	0.240													5	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	1482703	1482705	+	IGR	DEL	GAG	-	-	rs72210635		TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr16:1482703_1482705delGAG								C16orf91 (3358 upstream) : CCDC154 (1685 downstream)																							ggaggaggaagaggaggaggagg	0.576													3	3	---	---	---	---					
SP6	80320	broad.mit.edu	37	17	45929130	45929130	+	5'Flank	DEL	C	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr17:45929130delC	uc002img.1	-						SP6_uc002imh.1_Intron	NM_199262	NP_954871	Q3SY56	SP6_HUMAN	Sp6 transcription factor						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ccgcttctctccaccaccacc	0.239													2	4	---	---	---	---					
SLC26A11	284129	broad.mit.edu	37	17	78201649	78201651	+	In_Frame_Del	DEL	TGC	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr17:78201649_78201651delTGC	uc002jyb.1	+	7	895_897	c.626_628delTGC	c.(625-630)ATGCTG>ATG	p.L213del	SLC26A11_uc002jyc.1_In_Frame_Del_p.L213del|SLC26A11_uc002jyd.1_In_Frame_Del_p.L213del|SLC26A11_uc010dhv.1_In_Frame_Del_p.L213del	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	213	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			CTGGTCTGCATGCTGCTGCTGCT	0.675													9	382	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	77377395	77377396	+	IGR	INS	-	T	T	rs11435088		TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr18:77377395_77377396insT								NFATC1 (88073 upstream) : CTDP1 (62405 downstream)																							ggaccccgcccccccgggaccc	0.119													2	4	---	---	---	---					
EPS8L1	54869	broad.mit.edu	37	19	55593835	55593836	+	Frame_Shift_Ins	INS	-	G	G			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr19:55593835_55593836insG	uc002qis.3	+	12	1183_1184	c.1079_1080insG	c.(1078-1080)TCGfs	p.S360fs	EPS8L1_uc010ess.1_Frame_Shift_Ins_p.S342fs|EPS8L1_uc010est.1_Frame_Shift_Ins_p.S360fs|EPS8L1_uc010yfr.1_Frame_Shift_Ins_p.S296fs|EPS8L1_uc010esu.1_RNA|EPS8L1_uc002qiu.2_Frame_Shift_Ins_p.S233fs|EPS8L1_uc002qiv.2_Frame_Shift_Ins_p.S6fs|EPS8L1_uc002qiw.2_Frame_Shift_Ins_p.S107fs	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway	360						cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GTGAACACGTCGGGGGGGCCGG	0.663													7	181	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	2772643	2772643	+	IGR	DEL	C	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr2:2772643delC								MYT1L (437598 upstream) : TSSC1 (420098 downstream)																							CCCGTCTAGGCCCCCTTTCCC	0.647													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9826311	9826312	+	IGR	INS	-	G	G			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr21:9826311_9826312insG								None (None upstream) : None (None downstream)																							TTccccgggtcggggggtgggg	0.426													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	47015722	47015722	+	IGR	DEL	G	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr22:47015722delG								CELSR1 (82655 upstream) : GRAMD4 (6936 downstream)																							GGTGGGGGCTGGGGCCCACTG	0.622													2	4	---	---	---	---					
GOLGB1	2804	broad.mit.edu	37	3	121410314	121410316	+	In_Frame_Del	DEL	CTA	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr3:121410314_121410316delCTA	uc003eei.3	-	14	8006_8008	c.7880_7882delTAG	c.(7879-7884)TTAGGA>TGA	p.2627_2628LG>*	GOLGB1_uc010hrc.2_In_Frame_Del_p.2632_2633LG>*|GOLGB1_uc003eej.3_In_Frame_Del_p.2593_2594LG>*	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	2627_2628	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TGATAGAGTCCTAAAGTACCTTC	0.369													9	25	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	146377564	146377565	+	IGR	DEL	AA	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr4:146377564_146377565delAA								OTUD4 (276732 upstream) : SMAD1 (25386 downstream)																							AGATTCTACTAAAAAAAAAATC	0.431													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	190076595	190076596	+	IGR	INS	-	T	T			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr4:190076595_190076596insT								None (None upstream) : FRG1 (785378 downstream)																							GGCTGCAGGGAGGGGAGGCGCA	0.703													3	3	---	---	---	---					
ZBTB24	9841	broad.mit.edu	37	6	109804747	109804752	+	5'Flank	DEL	GGGGCC	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr6:109804747_109804752delGGGGCC	uc003ptl.1	-						ZBTB24_uc011ear.1_5'Flank|ZBTB24_uc010kds.1_5'Flank|ZBTB24_uc010kdt.1_5'Flank|ZBTB24_uc003ptm.2_5'Flank	NM_014797	NP_055612	O43167	ZBT24_HUMAN	zinc finger and BTB domain containing 24 isoform						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		CCGGGGCTTTggggccggggccgggg	0.092													8	20	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160132772	160132789	+	IGR	DEL	CACTCACATTGCTCTGAT	-	-	rs62437331		TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr6:160132772_160132789delCACTCACATTGCTCTGAT								SOD2 (18419 upstream) : WTAP (15340 downstream)																							ccacaaccaccactcacattgctctgatcaccataacc	0.000													7	551	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	160319639	160319639	+	IGR	DEL	C	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr6:160319639delC								PNLDC1 (77904 upstream) : MAS1 (8335 downstream)																							ccttcctcttcctcctccttc	0.000													2	4	---	---	---	---					
AQP1	358	broad.mit.edu	37	7	30951278	30951279	+	5'Flank	DEL	GA	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr7:30951278_30951279delGA	uc003tbv.1	+						AQP1_uc011kac.1_Intron	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1						ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	AGGGCGgagggagagagagaga	0.490													2	4	---	---	---	---					
PTPN12	5782	broad.mit.edu	37	7	77166520	77166521	+	5'Flank	INS	-	GGC	GGC			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr7:77166520_77166521insGGC	uc003ugh.2	+						PTPN12_uc011kgp.1_5'Flank|PTPN12_uc011kgq.1_5'Flank	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type							soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						TGTGTTCCTGAggcggcggcgg	0.426													6	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	98409055	98409057	+	IGR	DEL	TAG	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chr7:98409055_98409057delTAG								NPTX2 (149874 upstream) : TMEM130 (35055 downstream)																							gtagtggtgatagtggtgatggt	0.000													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	12705	12705	+	RNA	DEL	C	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chrM:12705delC	uc004cox.3	+	1		c.369delC			uc004coy.2_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		TATCTACTCATTTTCCTAATT	0.373													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	442372	442373	+	IGR	INS	-	AGGA	AGGA			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chrX:442372_442373insAGGA								PPP2R3B (94745 upstream) : SHOX (142706 downstream)																							gaaggagacggaggaaggagag	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	110892535	110892535	+	IGR	DEL	G	-	-			TCGA-J8-A3O0-01A-11D-A21A-08	TCGA-J8-A3O0-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	ca22d305-a5d7-4e5a-acfd-dce09605603f	f079ecfe-3c20-4338-9e12-408dab097c66	g.chrX:110892535delG								DCX (237129 upstream) : ALG13 (31878 downstream)																							gttttgatctggtactggggt	0.000													2	4	---	---	---	---					
