Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16975947	16975947	+	RNA	SNP	C	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr1:16975947C>T	uc010och.1	+	11		c.1969C>T			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						AGAGCCAGGCCTACAGCGGGT	0.577000													3	35					0	0	0.004672	0	0
TMCO4	255104	broad.mit.edu	37	1	20067299	20067299	+	Missense_Mutation	SNP	T	C	C	rs147635887		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr1:20067299T>C	uc001bcn.2	-	11	1255	c.1013A>G	c.(1012-1014)CAG>CGG	p.Q338R	TMCO4_uc001bcm.2_Intron|TMCO4_uc001bco.1_Missense_Mutation_p.Q338R|TMCO4_uc001bcp.1_Missense_Mutation_p.Q298R	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	338						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		TAGGGCCTCCTGGGCCACCAT	0.587000													4	77					0	0	0.009096	0	0
DOCK1	1793	broad.mit.edu	37	10	129245700	129245700	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr10:129245700T>A	uc001ljt.2	+	51	5457	c.5393T>A	c.(5392-5394)GTC>GAC	p.V1798D	DOCK1_uc010qun.1_Missense_Mutation_p.V1819D|DOCK1_uc009yaq.2_Nonsense_Mutation_p.C797*|DOCK1_uc001ljw.1_5'Flank	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1798	Interaction with NCK2 second and third SH3 domain (minor).				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		GTGGCCGATGTCCCACCCCCT	0.592000													4	15					0	0	0.009096	0	0
CCKBR	887	broad.mit.edu	37	11	6281226	6281226	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr11:6281226G>C	uc001mcp.2	+	1	261	c.68G>C	c.(67-69)CGC>CCC	p.R23P	CCKBR_uc001mcq.2_5'UTR|CCKBR_uc001mcr.2_Missense_Mutation_p.R23P|CCKBR_uc001mcs.2_Missense_Mutation_p.R23P	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	23	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TCCCTGTGCCGCCCGGGGGCG	0.716000													6	17					0	0	0.029380	0	0
LRP4	4038	broad.mit.edu	37	11	46920187	46920187	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr11:46920187T>A	uc001ndn.3	-	7	864	c.718A>T	c.(718-720)AGT>TGT	p.S240C	LRP4_uc009ylh.1_Missense_Mutation_p.S191C	NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	240	Extracellular (Potential).|LDL-receptor class A 6.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		CACAGGCCACTGTCACACATG	0.567000													49	172					0	0	0.048971	0	0
EPS8	2059	broad.mit.edu	37	12	15784493	15784493	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr12:15784493C>A	uc009zif.2	-	18	2021	c.1927G>T	c.(1927-1929)GCA>TCA	p.A643S	EPS8_uc001rdb.2_Missense_Mutation_p.A643S|EPS8_uc009zig.2_Missense_Mutation_p.A383S|EPS8_uc010shv.1_Missense_Mutation_p.A383S	NM_004447	NP_004438	Q12929	EPS8_HUMAN	epidermal growth factor receptor pathway	643	Pro-rich.				cell proliferation|epidermal growth factor receptor signaling pathway		SH3/SH2 adaptor activity			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		all_epithelial(100;1.87e-05)|Breast(259;0.000286)|Hepatocellular(102;0.244)		BRCA - Breast invasive adenocarcinoma(232;4.29e-05)|GBM - Glioblastoma multiforme(207;0.0264)		GGAACAGGTGCTGGAGTGGAA	0.547000													28	132					6.32553e-13	7.06971e-13	0.024334	1	0
SFRS2IP	9169	broad.mit.edu	37	12	46320210	46320210	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr12:46320210G>T	uc001rox.2	-	11	3561	c.3274C>A	c.(3274-3276)CAG>AAG	p.Q1092K	SFRS2IP_uc001row.2_Missense_Mutation_p.Q777K|SFRS2IP_uc001roy.1_Missense_Mutation_p.Q1166K	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1092					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		TTTTCATTCTGATCTTTATAG	0.433000													20	102					1.50039e-11	1.64466e-11	0.012319	1	0
INHBC	3626	broad.mit.edu	37	12	57828750	57828750	+	Silent	SNP	A	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr12:57828750A>C	uc001snv.1	+	1	208	c.81A>C	c.(79-81)CCA>CCC	p.P27P		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	27					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						GTCAGTGTCCAGCATGTGGGG	0.607000													15	74					0	0	0.020292	0	0
ALDH1L2	160428	broad.mit.edu	37	12	105428135	105428135	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr12:105428135A>C	uc001tlc.2	-	19	2314	c.2187T>G	c.(2185-2187)ATT>ATG	p.I729M	ALDH1L2_uc009zuo.2_Missense_Mutation_p.I184M|ALDH1L2_uc009zup.2_RNA	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2	729	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						GCCCAGCAGCAATACAGTTCT	0.418000													13	59					0	0	0.033300	0	0
Unknown	0	broad.mit.edu	37	13	21875674	21875674	+	RNA	SNP	C	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr13:21875674C>T	uc001unz.1	+	2		c.307C>T			uc001uny.2_RNA					Homo sapiens cDNA FLJ33446 fis, clone BRAMY1000095.																		GCTTGTGGACCGTGCGTGTTC	0.502000													3	25					0	0	0.004672	0	0
LOC374491	374491	broad.mit.edu	37	13	25171595	25171595	+	RNA	SNP	T	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr13:25171595T>C	uc001upm.2	+	13		c.1491T>C			LOC374491_uc001upn.2_RNA|LOC374491_uc001upo.2_RNA					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						TCCACCAGAATTTGCCGTGGA	0.348000													14	49					0	0	0.043863	0	0
RNF6	6049	broad.mit.edu	37	13	26788332	26788332	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr13:26788332T>A	uc001uqo.2	-	5	1978	c.1687A>T	c.(1687-1689)AGT>TGT	p.S563C	RNF6_uc001uqn.1_Intron|RNF6_uc010aak.2_Missense_Mutation_p.S563C|RNF6_uc001uqp.2_Missense_Mutation_p.S563C|RNF6_uc001uqq.2_Missense_Mutation_p.S563C|RNF6_uc010tdk.1_Missense_Mutation_p.S207C	NM_183044	NP_898865	Q9Y252	RNF6_HUMAN	ring finger protein 6	563					negative regulation of axon extension|positive regulation of transcription, DNA-dependent|protein K27-linked ubiquitination|protein K48-linked ubiquitination|protein K6-linked ubiquitination|regulation of androgen receptor signaling pathway|ubiquitin-dependent protein catabolic process	axon|cytoplasm|PML body	androgen receptor binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|skin(1)	2	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.00893)|Epithelial(112;0.0481)|OV - Ovarian serous cystadenocarcinoma(117;0.148)|GBM - Glioblastoma multiforme(144;0.23)|Lung(94;0.245)		CTACTGTCACTGTTTCGAGTA	0.483000													44	118					0	0	0.045515	0	0
TEP1	7011	broad.mit.edu	37	14	20857434	20857434	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr14:20857434C>T	uc001vxe.2	-	17	2528	c.2488G>A	c.(2488-2490)GAT>AAT	p.D830N	TEP1_uc010ahk.2_Missense_Mutation_p.D180N|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.D722N	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	830					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AGTGTCACATCATTGGGATTC	0.418000													15	43					0	0	0.028581	0	0
ATP10A	57194	broad.mit.edu	37	15	25959389	25959389	+	Splice_Site	SNP	C	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr15:25959389C>G	uc010ayu.2	-	10	1883	c.1777_splice	c.e10-1	p.V593_splice		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A						ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		TCACCCTCACCTGCAAGAGAA	0.582000													5	33					0	0	0.014758	0	0
ALDH3A2	224	broad.mit.edu	37	17	19575183	19575183	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr17:19575183T>A	uc002gwb.1	+	9	1578	c.1357T>A	c.(1357-1359)TTT>ATT	p.F453I	ALDH3A2_uc002gwa.1_Missense_Mutation_p.F453I|ALDH3A2_uc010cqr.1_Missense_Mutation_p.F260I|ALDH3A2_uc002gwc.1_Missense_Mutation_p.F453I|ALDH3A2_uc002gwd.1_Missense_Mutation_p.F260I	NM_000382	NP_000373	P51648	AL3A2_HUMAN	aldehyde dehydrogenase 3A2 isoform 2	453	Cytoplasmic.				cellular aldehyde metabolic process|central nervous system development|epidermis development|lipid metabolic process|peripheral nervous system development	endoplasmic reticulum membrane|integral to membrane	3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(2)	2	all_cancers(12;1.39e-05)|all_epithelial(12;0.00158)|Breast(13;0.245)				NADH(DB00157)	TTGGGGAAAATTTTTTCTCTT	0.423000													50	190					0	0	0.048971	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274291	39274291	+	Missense_Mutation	SNP	T	C	C	rs149439944	by1000genomes	TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr17:39274291T>C	uc002hvz.2	-	1	316	c.277A>G	c.(277-279)ATG>GTG	p.M93V		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	93	14.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			TGGCAGCACATAGACTGGCAG	0.388000													4	66					0	0	0.047766	0	0
Unknown	0	broad.mit.edu	37	17	39296167	39296167	+	RNA	SNP	A	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr17:39296167A>G	uc010cxk.1	-	1		c.537T>C								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		GGCAGGTGGAAATGACACAGG	0.478000													3	18					0	0	0.014758	0	0
ENGASE	64772	broad.mit.edu	37	17	77079593	77079593	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr17:77079593C>G	uc002jwv.2	+	9	1180	c.1172C>G	c.(1171-1173)CCC>CGC	p.P391R	ENGASE_uc002jww.2_Missense_Mutation_p.P97R	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	391						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						CGTTATCTGCCCACACATAGC	0.617000													10	54					0	0	0.006214	0	0
AATK	9625	broad.mit.edu	37	17	79094952	79094952	+	Silent	SNP	A	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr17:79094952A>T	uc010dia.2	-	11	2864	c.2784T>A	c.(2782-2784)TCT>TCA	p.S928S	AATK_uc010dhz.2_Intron	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	928						integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GCTGCCCTCCAGAGGGGCCAG	0.647000													6	19					0	0	0.029380	0	0
FCGRT	2217	broad.mit.edu	37	19	50017180	50017180	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr19:50017180T>C	uc002poe.2	+	3	601	c.115T>C	c.(115-117)TCG>CCG	p.S39P	FCGRT_uc002pod.2_RNA|FCGRT_uc002pog.2_Missense_Mutation_p.S39P|FCGRT_uc002pof.1_5'UTR|FCGRT_uc010yax.1_Missense_Mutation_p.S39P|FCGRT_uc002poh.1_5'Flank	NM_001136019	NP_001129491	P55899	FCGRN_HUMAN	Fc fragment of IgG, receptor, transporter, alpha	39	Extracellular (Potential).|Alpha-1.				antigen processing and presentation|female pregnancy|immune response	integral to membrane|MHC class I protein complex	IgG binding|receptor activity			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00291)|GBM - Glioblastoma multiforme(134;0.0156)		CGCGGTGTCCTCGCCTGCCCC	0.657000													53	139					0	0	0.048971	0	0
NCOA1	8648	broad.mit.edu	37	2	24991159	24991159	+	Silent	SNP	C	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr2:24991159C>T	uc002rfk.2	+	21	4483	c.4225C>T	c.(4225-4227)CTG>TTG	p.L1409L	NCOA1_uc010eye.2_3'UTR|NCOA1_uc002rfi.2_3'UTR|NCOA1_uc002rfj.2_3'UTR|NCOA1_uc002rfl.2_Silent_p.L1408L|NCOA1_uc010eyf.2_3'UTR	NM_003743	NP_003734	Q15788	NCOA1_HUMAN	nuclear receptor coactivator 1 isoform 1	1409									PAX3/NCOA1(8)	soft_tissue(8)|ovary(1)|lung(1)|skin(1)	11	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGACCCTTACCTGAACCAGCC	0.532000			T	PAX3	alveolar rhadomyosarcoma								25	99					0	0	0.021523	0	0
CCDC75	253635	broad.mit.edu	37	2	37319335	37319336	+	Missense_Mutation	DNP	AA	CT	CT			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr2:37319335_37319336AA>CT	uc010ezz.2	+	6	610_611	c.465_466AA>CT	c.(463-468)GAAATG>GACTTG	p.155_156EM>DL	CCDC75_uc002rpr.3_Missense_Mutation_p.52_53EM>DL	NM_174931	NP_777591	Q8N954	CCD75_HUMAN	coiled-coil domain containing 75	155_156						intracellular	nucleic acid binding				0		all_hematologic(82;0.21)				AGCAAGATGAAATGAAGCTAGA	0.361000													8	17					0	0	0.004672	0	0
RTKN	6242	broad.mit.edu	37	2	74657398	74657398	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr2:74657398A>G	uc002sle.2	-	5	643	c.526T>C	c.(526-528)TTT>CTT	p.F176L	RTKN_uc002slc.2_Missense_Mutation_p.F163L|RTKN_uc002sld.2_Missense_Mutation_p.F126L	NM_001015055	NP_001015055	Q9BST9	RTKN_HUMAN	rhotekin isoform a	176					apoptosis|regulation of anti-apoptosis|Rho protein signal transduction	intracellular	GTP binding|GTP-Rho binding|GTPase inhibitor activity			skin(1)	1						TTGCTCTGAAAGGAGATGTCT	0.562000													7	32					0	0	0.038147	0	0
SPOPL	339745	broad.mit.edu	37	2	139308572	139308572	+	Silent	SNP	A	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr2:139308572A>G	uc002tvh.2	+	4	700	c.300A>G	c.(298-300)GCA>GCG	p.A100A		NM_001001664	NP_001001664	Q6IQ16	SPOPL_HUMAN	speckle-type POZ protein-like	100	MATH.					nucleus				skin(2)|breast(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0296)		AAGTTCGAGCAAAATTCAAAT	0.368000													27	76					0	0	0.037714	0	0
KYNU	8942	broad.mit.edu	37	2	143718222	143718222	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr2:143718222C>G	uc002tvl.2	+	8	742	c.612C>G	c.(610-612)ATC>ATG	p.I204M	KYNU_uc002tvk.2_Missense_Mutation_p.I204M|KYNU_uc010fnm.2_Missense_Mutation_p.I204M	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	204					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	TAGAGGATATCCTTGAAGTAA	0.368000													12	68					0	0	0.016723	0	0
LY75	4065	broad.mit.edu	37	2	160665004	160665004	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr2:160665004T>C	uc002ubc.3	-	33	4847	c.4778A>G	c.(4777-4779)AAC>AGC	p.N1593S	LY75_uc002ubb.3_Missense_Mutation_p.N1593S|LY75_uc010fos.2_Missense_Mutation_p.N1593S	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	1593	Extracellular (Potential).|C-type lectin 10.				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		CATGGTAATGTTATTATTTTC	0.338000													17	52					0	0	0.049695	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18142850	18142850	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr20:18142850C>G	uc002wqj.2	+	6	1691	c.1069C>G	c.(1069-1071)CCA>GCA	p.P357A	CSRP2BP_uc002wqk.2_Missense_Mutation_p.P229A|CSRP2BP_uc010zru.1_Missense_Mutation_p.P228A	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	357					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						AGATCTGATTCCAGATGTGAT	0.458000													104	412					0	0	0.048971	0	0
HM13	81502	broad.mit.edu	37	20	30137040	30137040	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr20:30137040G>A	uc002wwe.2	+	6	685	c.571G>A	c.(571-573)GCC>ACC	p.A191T	HM13_uc002wwc.2_Missense_Mutation_p.A191T|HM13_uc002wwd.2_Missense_Mutation_p.A191T|HM13_uc002wwf.2_Missense_Mutation_p.A67T|HM13_uc010gdu.2_Missense_Mutation_p.A67T	NM_030789	NP_110416	Q8TCT9	HM13_HUMAN	minor histocompatibility antigen 13 isoform 1	191	Cytoplasmic (Potential).				membrane protein proteolysis	cell surface|endoplasmic reticulum membrane|integral to membrane|plasma membrane	aspartic-type endopeptidase activity|protein binding			breast(1)	1	all_cancers(5;3.44e-05)|Lung NSC(7;4.38e-06)|all_lung(7;7.65e-06)|all_hematologic(12;0.158)|Ovarian(7;0.198)		all cancers(5;0.000479)|Colorectal(19;0.00202)|COAD - Colon adenocarcinoma(19;0.0264)			TTTTGGCCTGGCCTTCTCCCT	0.567000													54	254					0	0	0.048971	0	0
CHD6	84181	broad.mit.edu	37	20	40080522	40080522	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr20:40080522C>G	uc002xka.1	-	22	3645	c.3467G>C	c.(3466-3468)TGG>TCG	p.W1156S		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1156					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GATCAGTTCCCAAATGAAACT	0.522000													35	194					0	0	0.027894	0	0
PARD6B	84612	broad.mit.edu	37	20	49367023	49367023	+	Nonstop_Mutation	SNP	T	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr20:49367023T>C	uc002xvo.2	+	3	1360	c.1117T>C	c.(1117-1119)TGA>CGA	p.*373R		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	373					axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						CATAACATTATGAAACCGTGG	0.398000													10	48					0	0	0.006214	0	0
PRPF6	24148	broad.mit.edu	37	20	62648174	62648174	+	Silent	SNP	T	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr20:62648174T>C	uc002yho.2	+	12	1791	c.1623T>C	c.(1621-1623)CAT>CAC	p.H541H	PRPF6_uc002yhp.2_Silent_p.H541H	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	541					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					ATCGGAAGCATACCTGGATGG	0.552000													10	55					0	0	0.010729	0	0
DLEC1	9940	broad.mit.edu	37	3	38159473	38159473	+	Silent	SNP	A	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr3:38159473A>G	uc003cho.1	+	33	4683	c.4662A>G	c.(4660-4662)TCA>TCG	p.S1554S	DLEC1_uc003chp.1_Silent_p.S1554S|DLEC1_uc010hgv.1_Silent_p.S1557S|DLEC1_uc003chr.1_Silent_p.S625S|DLEC1_uc003chs.1_Silent_p.S111S	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1554					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		AGACAGCCTCAGCGGACAAGC	0.612000											OREG0015476	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	16					0	0	0.014758	0	0
RGS12	6002	broad.mit.edu	37	4	3441324	3441324	+	Silent	SNP	T	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr4:3441324T>C	uc003ggw.2	+	18	5161	c.4257T>C	c.(4255-4257)CCT>CCC	p.P1419P	RGS12_uc003ggz.2_Silent_p.P771P|RGS12_uc003gha.2_Silent_p.P761P|RGS12_uc010icv.2_Silent_p.P618P|HGFAC_uc003ghc.2_5'Flank|HGFAC_uc010icw.2_5'Flank	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	1419						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GTGGTGGGCCTCCTACATCAG	0.677000													7	30					0	0	0.029380	0	0
CCNG2	901	broad.mit.edu	37	4	78082688	78082688	+	Nonsense_Mutation	SNP	C	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr4:78082688C>T	uc003hkq.3	+	5	886	c.583C>T	c.(583-585)CGA>TGA	p.R195*	CCNG2_uc003hkn.3_Nonsense_Mutation_p.R195*|CCNG2_uc011ccc.1_Nonsense_Mutation_p.R195*|CCNG2_uc003hkp.3_Nonsense_Mutation_p.R195*	NM_004354	NP_004345	Q16589	CCNG2_HUMAN	cyclin G2	195					cell cycle checkpoint|cell division|mitosis	cytoplasm				ovary(2)|lung(1)	3						TTGCAACTGCCGACTCATCTT	0.289000													7	37					0	0	0.047766	0	0
SYNPO2	171024	broad.mit.edu	37	4	119952706	119952706	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr4:119952706A>T	uc003icm.3	+	4	2972	c.2776A>T	c.(2776-2778)AAT>TAT	p.N926Y	SYNPO2_uc010ina.2_Missense_Mutation_p.N926Y|SYNPO2_uc010inb.2_Missense_Mutation_p.N926Y|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.N854Y	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	926						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TGTGGCCTATAATCCTATCCA	0.572000													26	65					0	0	0.030593	0	0
FTMT	94033	broad.mit.edu	37	5	121188229	121188229	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr5:121188229G>A	uc003kss.2	+	1	580	c.571G>A	c.(571-573)GAT>AAT	p.D191N		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	191	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CCATTTGTGCGATTTCCTGGA	0.507000													46	138					0	0	0.048971	0	0
TRIM52	84851	broad.mit.edu	37	5	180687083	180687083	+	Silent	SNP	G	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr5:180687083G>T	uc003mnp.2	-	1	1037	c.732C>A	c.(730-732)GCC>GCA	p.A244A	uc003mnq.2_5'Flank	NM_032765	NP_116154	Q96A61	TRI52_HUMAN	tripartite motif-containing 52	244	B box-type.					intracellular	zinc ion binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.0106)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.0588)|all_lung(500;0.149)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.232)		CCACACAGATGGCCTCTTTGT	0.537000													34	101					1.06647e-15	1.21578e-15	0.017118	1	0
DDX56	54606	broad.mit.edu	37	7	44607797	44607797	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr7:44607797T>G	uc003tlg.2	-	12	2052	c.1409A>C	c.(1408-1410)GAC>GCC	p.D470A	DDX56_uc003tle.2_RNA|DDX56_uc003tlf.2_Missense_Mutation_p.D406A|DDX56_uc003tlh.2_RNA|DDX56_uc010kyg.2_Missense_Mutation_p.D430A	NM_019082	NP_061955	Q9NY93	DDX56_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	470					rRNA processing	nucleolus	ATP binding|ATP-dependent RNA helicase activity|identical protein binding|RNA binding			upper_aerodigestive_tract(1)	1						CAGCTGGAGGTCCCTAGGGTT	0.567000													7	35					0	0	0.038147	0	0
RELN	5649	broad.mit.edu	37	7	103234873	103234873	+	Silent	SNP	G	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr7:103234873G>C	uc003vca.2	-	26	3766	c.3606C>G	c.(3604-3606)CCC>CCG	p.P1202P	RELN_uc010liz.2_Silent_p.P1202P	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1202					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTGAGAACACGGGCTGCCACC	0.488000													15	269					0	0	0.049695	0	0
PRSS55	203074	broad.mit.edu	37	8	10388999	10388999	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr8:10388999C>G	uc003wta.2	+	3	557	c.542C>G	c.(541-543)CCC>CGC	p.P181R	uc010lru.2_Intron|PRSS55_uc003wtb.2_RNA	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	181	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						CCCACGCAGCCCGGCCCTGCC	0.587000													10	82					0	0	0.008291	0	0
TRHR	7201	broad.mit.edu	37	8	110131438	110131438	+	Silent	SNP	G	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr8:110131438G>A	uc003ymz.3	+	2	967	c.951G>A	c.(949-951)CCG>CCA	p.P317P		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	317	Helical; Name=7; (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			CCATCAACCCGGTGATTTACA	0.438000													58	231					0	0	0.048971	0	0
COL22A1	169044	broad.mit.edu	37	8	139790649	139790649	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr8:139790649C>T	uc003yvd.2	-	15	2152	c.1705G>A	c.(1705-1707)GGG>AGG	p.G569R		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	569	Pro-rich.|Gly-rich.|Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCTTGGGGCCCCTGCAGAAGA	0.572000										HNSCC(7;0.00092)			17	34					0	0	0.043863	0	0
ANKS6	203286	broad.mit.edu	37	9	101533259	101533259	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr9:101533259A>T	uc004ayu.2	-	10	1912	c.1891T>A	c.(1891-1893)TTC>ATC	p.F631I	ANKS6_uc004ayt.2_Missense_Mutation_p.F330I|ANKS6_uc004ayv.1_Missense_Mutation_p.F93I|ANKS6_uc004ayw.1_Missense_Mutation_p.F213I|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	631	Ser-rich.									ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				GAGTGGTTGAAGTTTCCAGAA	0.582000													12	35					0	0	0.010729	0	0
ALG2	85365	broad.mit.edu	37	9	101980774	101980774	+	Silent	SNP	G	A	A			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr9:101980774G>A	uc004azf.2	-	2	763	c.693C>T	c.(691-693)ATC>ATT	p.I231I	ALG2_uc004azg.2_Silent_p.I138I	NM_033087	NP_149078	Q9H553	ALG2_HUMAN	alpha-1,3-mannosyltransferase ALG2	231					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in endoplasmic reticulum|protein N-linked glycosylation via asparagine|response to calcium ion	endoplasmic reticulum membrane|integral to membrane|membrane fraction|nucleus|perinuclear region of cytoplasm	alpha-1,3-mannosyltransferase activity|calcium-dependent protein binding|glycolipid 3-alpha-mannosyltransferase activity|protein anchor|protein heterodimerization activity|protein N-terminus binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.0559)				CGTATCTGTTGATGGAGAGCA	0.463000													25	65					0	0	0.016522	0	0
BHLHB9	80823	broad.mit.edu	37	X	102004858	102004858	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chrX:102004858G>C	uc010nog.2	+	4	1506	c.935G>C	c.(934-936)TGT>TCT	p.C312S	BHLHB9_uc011mrq.1_Missense_Mutation_p.C312S|BHLHB9_uc011mrr.1_Missense_Mutation_p.C312S|BHLHB9_uc011mrs.1_Missense_Mutation_p.C312S|BHLHB9_uc011mrt.1_Missense_Mutation_p.C312S|BHLHB9_uc004ejo.2_Missense_Mutation_p.C312S|BHLHB9_uc011mru.1_Missense_Mutation_p.C312S|BHLHB9_uc011mrv.1_Missense_Mutation_p.C312S	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	312						cytoplasm|nucleus	binding			ovary(2)	2						CCATTTGCTTGTCCTTGCAAA	0.398000													17	40					0	0	0.033300	0	0
SLC17A6	57084	broad.mit.edu	37	11	22363111	22363112	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr11:22363111_22363112delGA	uc001mqk.2	+	2	537_538	c.124_125delGA	c.(124-126)GAGfs	p.E42fs		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	42	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						GGAGACAATCGAGCTGACGGAG	0.649													17	95	---	---	---	---					
MORN3	283385	broad.mit.edu	37	12	122107353	122107353	+	Frame_Shift_Del	DEL	G	-	-			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr12:122107353delG	uc001uax.2	-	1	208	c.37delC	c.(37-39)CTGfs	p.L13fs	MORN3_uc001uay.2_RNA	NM_173855	NP_776254	Q6PF18	MORN3_HUMAN	MORN repeat containing 3	13											0	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000409)|Epithelial(86;0.00145)		CCCTTCCACAGGGACTCCGAC	0.602													42	194	---	---	---	---					
APOB	338	broad.mit.edu	37	2	21266775	21266783	+	In_Frame_Del	DEL	GCAGCGCCA	-	-	rs17240441		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr2:21266775_21266783delGCAGCGCCA	uc002red.2	-	1	163_171	c.35_43delTGGCGCTGC	c.(34-45)CTGGCGCTGCCT>CCT	p.LAL12del		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	12_14					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	agcagcgcaggcagcgccagcagcgccag	0.622													3	5	---	---	---	---					
FKBP9	11328	broad.mit.edu	37	7	33014881	33014881	+	Frame_Shift_Del	DEL	C	-	-			TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08									Somatic	Phase_I	Capture				Illumina GAIIx	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	g.chr7:33014881delC	uc003tdh.2	+	3	636	c.455delC	c.(454-456)ACCfs	p.T152fs	AVL9_uc011kai.1_Intron|FKBP9_uc011kak.1_RNA|FKBP9_uc011kal.1_Frame_Shift_Del_p.T205fs|FKBP9_uc003tdg.2_Frame_Shift_Del_p.T152fs|FKBP9_uc010kwm.2_Frame_Shift_Del_p.T59fs	NM_007270	NP_009201	O95302	FKBP9_HUMAN	FK506 binding protein 9 precursor	152					protein folding	endoplasmic reticulum|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			central_nervous_system(13)|ovary(1)	14			GBM - Glioblastoma multiforme(11;0.0156)			CAGATTCACACCTATTTCAAG	0.468													17	78	---	---	---	---					
