Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
EFHD2	79180	broad.mit.edu	37	1	15736668	15736668	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:15736668G>T	uc001awh.2	+	1	278	c.201G>T	c.(199-201)CAG>CAT	p.Q67H		NM_024329	NP_077305	Q96C19	EFHD2_HUMAN	EF-hand domain family, member D2	67						membrane raft					0		Renal(390;0.00145)|Breast(348;0.00173)|Colorectal(325;0.00215)|all_lung(284;0.00366)|Lung NSC(340;0.00395)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)|Hepatocellular(190;0.152)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.59e-07)|COAD - Colon adenocarcinoma(227;3.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000119)|KIRC - Kidney renal clear cell carcinoma(229;0.00251)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0649)		ACCTCAACCAGGGCATCGGCG	0.697													18	31					1.33834e-09	1.37713e-09	0.557998	1	0
RNF186	54546	broad.mit.edu	37	1	20141448	20141448	+	Nonsense_Mutation	SNP	A	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:20141448A>T	uc001bcr.2	-	1	324	c.147T>A	c.(145-147)TGT>TGA	p.C49*		NM_019062	NP_061935	Q9NXI6	RN186_HUMAN	ring finger protein 186	49	RING-type.					integral to membrane	zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;7.77e-05)|Kidney(64;0.000162)|GBM - Glioblastoma multiforme(114;0.00036)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCAACCGGGGACAGCTGTAGG	0.642													51	74					0	0	0.870114	0	0
HSPG2	3339	broad.mit.edu	37	1	22165520	22165520	+	Silent	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:22165520C>A	uc001bfj.2	-	74	9988	c.9948G>T	c.(9946-9948)GTG>GTT	p.V3316V	HSPG2_uc009vqd.2_Silent_p.V3317V	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3316	Ig-like C2-type 19.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	ACTGGAGCTGCACCGTCTCCC	0.677													38	44					1.47244e-24	1.62083e-24	0.819951	1	0
RPL11	6135	broad.mit.edu	37	1	24021148	24021148	+	Splice_Site	SNP	A	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:24021148A>T	uc001bhk.2	+	4	285	c.265_splice	c.e4-2	p.V89_splice	RPL11_uc001bhl.2_Splice_Site_p.V88_splice|RPL11_uc001bhm.2_Splice_Site_p.V78_splice|RPL11_uc001bhn.1_Splice_Site_p.V78_splice	NM_000975	NP_000966	P62913	RL11_HUMAN	ribosomal protein L11						endocrine pancreas development|protein localization to nucleus|protein targeting|ribosomal large subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|nucleolus	protein binding|rRNA binding|structural constituent of ribosome			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000112)|all_lung(284;0.00016)|Renal(390;0.000219)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;2.13e-24)|Colorectal(126;5.06e-08)|COAD - Colon adenocarcinoma(152;2.92e-06)|GBM - Glioblastoma multiforme(114;4.4e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000954)|KIRC - Kidney renal clear cell carcinoma(1967;0.00322)|STAD - Stomach adenocarcinoma(196;0.0124)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0837)|LUSC - Lung squamous cell carcinoma(448;0.185)		TTTTCTCCACAGGTGCGGGAG	0.443													49	75					0	0	0.870114	0	0
RHD	6007	broad.mit.edu	37	1	25611223	25611223	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:25611223C>A	uc001bjz.2	+	2	366	c.308C>A	c.(307-309)TCT>TAT	p.S103Y	RHD_uc010oep.1_Missense_Mutation_p.S103Y|RHD_uc001bkc.2_Missense_Mutation_p.S103Y|RHD_uc009vrm.2_Translation_Start_Site|RHD_uc001bka.2_Missense_Mutation_p.S103Y|RHD_uc001bkb.2_Missense_Mutation_p.S103Y|RHD_uc009vrn.2_Missense_Mutation_p.S103Y|RHD_uc009vro.2_Missense_Mutation_p.S103Y|RHD_uc009vrp.2_Missense_Mutation_p.S103Y	NM_016124	NP_057208	Q02161	RHD_HUMAN	Rh blood group D antigen isoform 1	103			S -> C (in a breast cancer sample; somatic mutation).	S -> P (in Ref. 4; AAB26081).		integral to plasma membrane		p.S103C(1)		breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;7.39e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;6.43e-07)|STAD - Stomach adenocarcinoma(196;0.000332)|BRCA - Breast invasive adenocarcinoma(304;0.000438)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.000908)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CAGTTCCCTTCTGGGAAGGTG	0.562													30	36					3.90053e-15	4.07261e-15	0.760397	1	0
SPTA1	6708	broad.mit.edu	37	1	158585088	158585088	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:158585088T>C	uc001fst.1	-	48	6905	c.6706A>G	c.(6706-6708)ATT>GTT	p.I2236V		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2236	Spectrin 21.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCCAATCCAATGGTGCTGTAT	0.527													116	175					0	0	0.870114	0	0
VANGL2	57216	broad.mit.edu	37	1	160385958	160385958	+	Nonsense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:160385958C>T	uc001fwb.1	+	4	477	c.178C>T	c.(178-180)CGA>TGA	p.R60*	VANGL2_uc001fwc.1_Nonsense_Mutation_p.R60*	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	60	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TGAGTCCACACGAGGGGATGA	0.662													36	61					0	0	0.812448	0	0
OBSCN	84033	broad.mit.edu	37	1	228475632	228475632	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:228475632A>T	uc009xez.1	+	36	9826	c.9782A>T	c.(9781-9783)CAG>CTG	p.Q3261L	OBSCN_uc001hsn.2_Missense_Mutation_p.Q3261L|OBSCN_uc001hsq.1_Missense_Mutation_p.Q517L	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3261	Ig-like 32.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TTCGGGGACCAGACTACTTCT	0.607													18	27					0	0	0.539581	0	0
OR2M7	391196	broad.mit.edu	37	1	248486962	248486962	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:248486962T>A	uc010pzk.1	-	1	909	c.909A>T	c.(907-909)AAA>AAT	p.K303N		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TTCCTAAGATTTTCATTAATG	0.393													11	72					0	0	0.411799	0	0
ZMYND11	10771	broad.mit.edu	37	10	267270	267270	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr10:267270A>T	uc010pzt.1	+	4	840	c.412A>T	c.(412-414)AGT>TGT	p.S138C	ZMYND11_uc001ifk.2_Missense_Mutation_p.S138C|ZMYND11_uc010pzu.1_Missense_Mutation_p.S138C|ZMYND11_uc010pzv.1_Intron|ZMYND11_uc010pzw.1_Intron|ZMYND11_uc001ifm.2_Intron|ZMYND11_uc010pzx.1_Missense_Mutation_p.S138C|ZMYND11_uc001ifn.2_Intron|ZMYND11_uc009xhg.2_Missense_Mutation_p.S121C|ZMYND11_uc009xhh.2_Intron|ZMYND11_uc010pzy.1_Intron	NM_006624	NP_006615	Q15326	ZMY11_HUMAN	zinc finger, MYND domain containing 11 isoform	98	PHD-type.				cell cycle|cell proliferation|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(4;1.32e-05)|all_lung(4;3.67e-05)|Lung NSC(4;0.000301)|all_epithelial(10;0.000416)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.132)	Epithelial(11;0.00289)|all cancers(11;0.0108)|Lung(33;0.0689)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		AGACAGCAGTAGTCCCTGGCA	0.448													41	70					0	0	0.840704	0	0
ARMC4	55130	broad.mit.edu	37	10	28225698	28225698	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr10:28225698C>A	uc009xky.2	-	15	2307	c.2209G>T	c.(2209-2211)GGG>TGG	p.G737W	ARMC4_uc010qds.1_Missense_Mutation_p.G262W|ARMC4_uc010qdt.1_Missense_Mutation_p.G429W|ARMC4_uc001itz.2_Missense_Mutation_p.G737W	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	737							binding			ovary(4)|skin(2)	6						CATATAGCCCCTGTGACAGCA	0.453													67	117					1.59245e-42	1.83844e-42	0.870114	1	0
BAG3	9531	broad.mit.edu	37	10	121429616	121429616	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr10:121429616C>T	uc001lem.2	+	2	740	c.434C>T	c.(433-435)ACT>ATT	p.T145I	BAG3_uc001lel.2_Missense_Mutation_p.T145I	NM_004281	NP_004272	O95817	BAG3_HUMAN	BCL2-associated athanogene 3	145	WW 2.				anti-apoptosis|apoptosis|protein folding	cytosol				ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00187)|BRCA - Breast invasive adenocarcinoma(275;0.148)		CCAGAAACCACTCAGCCAGAT	0.652													63	95					0	0	0.870114	0	0
Unknown	0	broad.mit.edu	37	10	134660468	134660468	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr10:134660468C>T	uc010qux.1	-	35	5413	c.5413G>A	c.(5413-5415)GCA>ACA	p.A1805T		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		CAGGTAGTTGCAGGGTCCAGG	0.652													12	19					0	0	0.411799	0	0
MPEG1	219972	broad.mit.edu	37	11	58979712	58979712	+	Silent	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr11:58979712G>T	uc001nnu.3	-	1	783	c.627C>A	c.(625-627)GTC>GTA	p.V209V		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	209	MACPF.|Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				CCCCAGCGTCGACACTGGTGG	0.587													44	70					2.35958e-20	2.55772e-20	0.847076	1	0
SLC4A8	9498	broad.mit.edu	37	12	51856201	51856201	+	Silent	SNP	C	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr12:51856201C>G	uc001rys.1	+	10	1387	c.1209C>G	c.(1207-1209)CCC>CCG	p.P403P	SLC4A8_uc010sni.1_Silent_p.P350P|SLC4A8_uc001rym.2_Silent_p.P350P|SLC4A8_uc001ryn.2_Silent_p.P350P|SLC4A8_uc001ryo.2_Silent_p.P350P|SLC4A8_uc001ryp.1_3'UTR|SLC4A8_uc010snj.1_Silent_p.P430P|SLC4A8_uc001ryq.3_Silent_p.P403P|SLC4A8_uc001ryr.2_Silent_p.P403P|SLC4A8_uc010snk.1_Silent_p.P350P	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	403	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		AGTGGGATCCCTCCATTAGAA	0.502													72	39					0	0	0.870114	0	0
KRT84	3890	broad.mit.edu	37	12	52779107	52779107	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr12:52779107C>T	uc001sah.1	-	1	311	c.263G>A	c.(262-264)GGT>GAT	p.G88D		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	88	Head.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		TCTCCCATCACCAAAACCCAT	0.597													62	172					0	0	0.870114	0	0
ITGA7	3679	broad.mit.edu	37	12	56088585	56088585	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr12:56088585C>T	uc001shh.2	-	15	2405	c.2185G>A	c.(2185-2187)GGG>AGG	p.G729R	ITGA7_uc001shg.2_Missense_Mutation_p.G725R|ITGA7_uc010sps.1_Missense_Mutation_p.G632R|ITGA7_uc009znw.2_Intron|ITGA7_uc009znx.2_Missense_Mutation_p.G606R	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	769	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GCCCGGACCCCTGAGTAGTGC	0.642													70	51					0	0	0.870114	0	0
STAT6	6778	broad.mit.edu	37	12	57498519	57498519	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr12:57498519A>T	uc009zpe.2	-	10	1330	c.1079T>A	c.(1078-1080)TTC>TAC	p.F360Y	STAT6_uc009zpf.2_Missense_Mutation_p.F360Y|STAT6_uc001sna.2_Missense_Mutation_p.F360Y|STAT6_uc010srb.1_Missense_Mutation_p.F250Y|STAT6_uc010src.1_Missense_Mutation_p.F250Y|STAT6_uc010srd.1_Missense_Mutation_p.F250Y|STAT6_uc009zpg.2_Missense_Mutation_p.F409Y	NM_003153	NP_003144	P42226	STAT6_HUMAN	signal transducer and activator of transcription	360					regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4						CAGGTTCTTGAACAGGGCAGA	0.577													60	45					0	0	0.870114	0	0
R3HDM2	22864	broad.mit.edu	37	12	57663773	57663774	+	Missense_Mutation	DNP	TC	CA	CA			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr12:57663773_57663774TC>CA	uc009zpm.1	-	13	1341_1342	c.1306_1307GA>TG	c.(1306-1308)GAT>TGT	p.D436C	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Missense_Mutation_p.D131C|R3HDM2_uc001snr.2_Missense_Mutation_p.D163C|R3HDM2_uc001sns.2_Missense_Mutation_p.D436C|R3HDM2_uc001snt.2_Missense_Mutation_p.D450C|R3HDM2_uc009zpn.1_Missense_Mutation_p.D59C	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	436	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						GCTGAGGTCATCTGCCTGTTGA	0.465													45	113					0	0	0.115264	0	0
VPS37B	79720	broad.mit.edu	37	12	123351949	123351949	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr12:123351949T>G	uc001udl.2	-	4	675	c.572A>C	c.(571-573)TAC>TCC	p.Y191S		NM_024667	NP_078943	Q9H9H4	VP37B_HUMAN	vacuolar protein sorting 37B	191	Pro-rich.				cellular membrane organization|endosome transport|protein transport	late endosome membrane					0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.08e-05)|Epithelial(86;0.000197)|BRCA - Breast invasive adenocarcinoma(302;0.205)		TGGGGCAGGGTAGGGAAGGGG	0.706													15	88					0	0	0.706142	0	0
USPL1	10208	broad.mit.edu	37	13	31232332	31232332	+	Silent	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr13:31232332T>C	uc001utc.2	+	9	2550	c.2118T>C	c.(2116-2118)CTT>CTC	p.L706L	USPL1_uc001utd.2_Silent_p.L377L|USPL1_uc001ute.1_Silent_p.L377L	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	706					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		AACAATTCCTTACACCAAAAA	0.348													30	28					0	0	0.729181	0	0
FAM48A	55578	broad.mit.edu	37	13	37598530	37598530	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr13:37598530T>G	uc001uwg.2	-	18	1627	c.1379A>C	c.(1378-1380)AAA>ACA	p.K460T	FAM48A_uc010abt.2_Missense_Mutation_p.K461T|FAM48A_uc001uwh.2_Missense_Mutation_p.K461T|FAM48A_uc001uwi.2_Missense_Mutation_p.K460T|FAM48A_uc001uwj.2_Missense_Mutation_p.K461T|FAM48A_uc001uwk.2_Missense_Mutation_p.K460T|FAM48A_uc010tes.1_Missense_Mutation_p.K424T|FAM48A_uc001uwl.1_Missense_Mutation_p.K460T|FAM48A_uc001uwd.2_5'Flank|FAM48A_uc001uwe.2_5'UTR|FAM48A_uc001uwf.2_Missense_Mutation_p.K38T	NM_001014286	NP_001014308	Q8NEM7	FA48A_HUMAN	family with sequence similarity 48, member A	460					autophagy|gastrulation	SAGA-type complex	protein binding				0		Lung NSC(96;2.09e-06)|Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.0959)		all cancers(112;6.06e-07)|Epithelial(112;1.87e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00794)|BRCA - Breast invasive adenocarcinoma(63;0.0128)|GBM - Glioblastoma multiforme(144;0.0477)		GGGTCGATGTTTTACACCCTT	0.353													21	27					0	0	0.624587	0	0
AKAP11	11215	broad.mit.edu	37	13	42876085	42876085	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr13:42876085A>G	uc001uys.1	+	8	3378	c.3203A>G	c.(3202-3204)CAT>CGT	p.H1068R		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1068					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		CCCTTTCCTCATTCACATACT	0.398													62	99					0	0	0.870114	0	0
ZC3H13	23091	broad.mit.edu	37	13	46619094	46619094	+	Missense_Mutation	SNP	T	C	C	rs138236264		TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr13:46619094T>C	uc010tfw.1	-	2	229	c.223A>G	c.(223-225)AGA>GGA	p.R75G	ZC3H13_uc001vas.1_Missense_Mutation_p.R75G|ZC3H13_uc001vat.1_Missense_Mutation_p.R75G	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	75							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		GTTTACCTTCTATAATTGCTG	0.373													22	45					0	0	0.624587	0	0
COCH	1690	broad.mit.edu	37	14	31355191	31355191	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr14:31355191C>T	uc001wqr.2	+	11	1230	c.1150C>T	c.(1150-1152)CGC>TGC	p.R384C	COCH_uc001wqp.2_Missense_Mutation_p.R384C|COCH_uc001wqq.3_Missense_Mutation_p.R384C|uc001wqs.2_RNA|COCH_uc001wqt.1_Missense_Mutation_p.R235C	NM_004086	NP_004077	O43405	COCH_HUMAN	cochlin precursor	384	VWFA 2.				sensory perception of sound	proteinaceous extracellular matrix				pancreas(1)|central_nervous_system(1)|skin(1)	3	Hepatocellular(127;0.0877)|Breast(36;0.148)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)|BRCA - Breast invasive adenocarcinoma(188;0.0805)	GBM - Glioblastoma multiforme(265;0.00645)		TAGCAATTTCCGCCTCATGCT	0.428													41	50					0	0	0.819951	0	0
MDGA2	161357	broad.mit.edu	37	14	47530766	47530766	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr14:47530766C>T	uc001wwj.3	-	7	1200	c.1004G>A	c.(1003-1005)CGA>CAA	p.R335Q	MDGA2_uc001wwi.3_Missense_Mutation_p.R106Q|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	335					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						GATCCAAAATCGTCCTTTTTT	0.368													16	29					0	0	0.500413	0	0
C14orf135	64430	broad.mit.edu	37	14	60591759	60591759	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr14:60591759T>C	uc001xer.3	+	8	2690	c.2168T>C	c.(2167-2169)GTA>GCA	p.V723A	C14orf135_uc001xeq.2_Missense_Mutation_p.V723A|C14orf135_uc010apm.2_RNA	NM_022495	NP_071940	Q63HM2	CN135_HUMAN	hepatitis C virus F protein-binding protein 2	957						integral to membrane				ovary(2)	2		Myeloproliferative disorder(585;0.163)		OV - Ovarian serous cystadenocarcinoma(108;0.127)		GCCTCAAATGTACTGGAAGAA	0.348													22	29					0	0	0.624587	0	0
SYNE2	23224	broad.mit.edu	37	14	64606710	64606710	+	Silent	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr14:64606710T>C	uc001xgm.2	+	80	15125	c.14895T>C	c.(14893-14895)CAT>CAC	p.H4965H	SYNE2_uc001xgl.2_Silent_p.H4965H|SYNE2_uc010apy.2_Silent_p.H1350H|SYNE2_uc001xgn.2_5'UTR|SYNE2_uc001xgo.2_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4965	Spectrin 1.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		CTTCCCAGCATACTCTGAATT	0.373													34	52					0	0	0.788014	0	0
NUDT14	256281	broad.mit.edu	37	14	105639492	105639492	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr14:105639492T>G	uc010tyn.1	-	5	649	c.535A>C	c.(535-537)ATT>CTT	p.I179L	NUDT14_uc001yqi.2_RNA	NM_177533	NP_803877	O95848	NUD14_HUMAN	nudix-type motif 14	179	Nudix hydrolase.					cytoplasm	metal ion binding|protein binding|UDP-sugar diphosphatase activity			skin(1)	1		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		ACCACCTCAATGAGCTCACCC	0.617										HNSCC(42;0.11)			29	43					0	0	0.717897	0	0
ADAM6	8755	broad.mit.edu	37	14	106539191	106539191	+	RNA	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr14:106539191G>A	uc010tyt.1	-	1519		c.31502C>T								Parts of antibodies, mostly variable regions.												0						GAACTTCTGTGCATAGCCTGT	0.532													6	9					0	0	0.248553	0	0
TGM7	116179	broad.mit.edu	37	15	43577123	43577123	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr15:43577123C>T	uc001zrf.1	-	7	898	c.893G>A	c.(892-894)CGT>CAT	p.R298H		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	298					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	GGAAACAACACGGGTTGGAAC	0.413													42	62					0	0	0.819951	0	0
EID1	23741	broad.mit.edu	37	15	49170564	49170564	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr15:49170564A>C	uc001zxc.1	+	1	275	c.191A>C	c.(190-192)CAG>CCG	p.Q64P	SHC4_uc010uey.1_5'Flank|SHC4_uc010uez.1_5'Flank|SHC4_uc001zxb.1_Intron	NM_014335	NP_055150	Q9Y6B2	EID1_HUMAN	CREBBP/EP300 inhibitor 1	64	Interaction with NR0B2 (By similarity).				cell cycle|cell differentiation|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	histone acetyltransferase binding|histone acetyltransferase regulator activity|transcription corepressor activity			liver(1)	1		all_lung(180;0.00455)		all cancers(107;2.73e-08)|GBM - Glioblastoma multiforme(94;9.58e-07)		GAGGAGGCCCAGCCAATGGCG	0.697													22	38					0	0	0.592651	0	0
C15orf42	90381	broad.mit.edu	37	15	90138786	90138786	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr15:90138786G>T	uc002boe.2	+	7	1844	c.1844G>T	c.(1843-1845)AGA>ATA	p.R615I		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	615					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CCTAGTGGGAGAACAGTGGAT	0.423													37	36					8.73648e-17	9.32767e-17	0.796494	1	0
MPG	4350	broad.mit.edu	37	16	133072	133072	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:133072A>C	uc002cfn.2	+	4	655	c.337A>C	c.(337-339)AAT>CAT	p.N113H	MPG_uc002cfm.2_Missense_Mutation_p.N96H|MPG_uc010bqp.2_Missense_Mutation_p.N96H|MPG_uc002cfo.2_Missense_Mutation_p.N108H	NM_002434	NP_002425	P29372	3MG_HUMAN	N-methylpurine-DNA glycosylase isoform a	113					depurination|DNA dealkylation involved in DNA repair	nucleoplasm	alkylbase DNA N-glycosylase activity|damaged DNA binding|identical protein binding			ovary(1)|skin(1)	2		all_cancers(16;9.01e-08)|all_epithelial(16;7.64e-07)|Hepatocellular(780;0.000325)|Lung NSC(18;0.0104)|all_lung(18;0.0239)				GCGACTTCCTAATGGCACAGA	0.642								BER_DNA_glycosylases					16	292					0	0	0.500413	0	0
CASKIN1	57524	broad.mit.edu	37	16	2230031	2230031	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:2230031G>A	uc010bsg.1	-	18	3370	c.3338C>T	c.(3337-3339)CCG>CTG	p.P1113L		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	1113	Pro-rich.				signal transduction	cytoplasm				skin(2)	2						GGCCAAGGGCGGGCCTTCGAC	0.677													5	13					0	0	0.217242	0	0
RBBP6	5930	broad.mit.edu	37	16	24551969	24551969	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:24551969T>A	uc002dmh.2	+	1	1062	c.22T>A	c.(22-24)TTT>ATT	p.F8I	RBBP6_uc010vcb.1_Intron|RBBP6_uc002dmg.2_Missense_Mutation_p.F8I|RBBP6_uc002dmi.2_Missense_Mutation_p.F8I|RBBP6_uc010bxr.2_Missense_Mutation_p.F8I	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	8	DWNN.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GCATTATAAATTTTCCTCTAA	0.428													34	96					0	0	0.812448	0	0
MAZ	4150	broad.mit.edu	37	16	29819577	29819577	+	Missense_Mutation	SNP	G	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:29819577G>C	uc002dty.2	+	3	1238	c.1070G>C	c.(1069-1071)AGA>ACA	p.R357T	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAZ_uc002dtv.1_Intron|MAZ_uc010vdx.1_Missense_Mutation_p.R334T|MAZ_uc002dtw.2_Intron|MAZ_uc002dtx.2_Missense_Mutation_p.R357T|MAZ_uc010bzg.2_Intron|MAZ_uc002dtz.1_3'UTR|MAZ_uc002dua.2_5'UTR|MAZ_uc010vdy.1_5'UTR	NM_002383	NP_002374	P56270	MAZ_HUMAN	MYC-associated zinc finger protein isoform 1	357	C2H2-type 4.				regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription|transcription initiation from RNA polymerase II promoter	nucleus	DNA binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1						AGTCACGTCAGACAAGTGCAC	0.562													42	44					0	0	0.870114	0	0
SLC9A5	6553	broad.mit.edu	37	16	67293772	67293772	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:67293772G>A	uc002esm.2	+	12	1828	c.1765G>A	c.(1765-1767)GTA>ATA	p.V589I	SLC9A5_uc010cee.2_Missense_Mutation_p.V294I|SLC9A5_uc010vji.1_Missense_Mutation_p.V93I|uc002esn.1_5'Flank	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	589					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		GATTGACACAGTACGCAGCGG	0.627													55	37					0	0	0.870114	0	0
CYB5B	80777	broad.mit.edu	37	16	69493017	69493017	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:69493017T>G	uc002exg.1	+	4	444	c.355T>G	c.(355-357)TGC>GGC	p.C119G	CYB5B_uc010cfl.1_Intron	NM_030579	NP_085056	O43169	CYB5B_HUMAN	cytochrome b5 outer mitochondrial membrane	115					electron transport chain|transport	integral to membrane|mitochondrial outer membrane	heme binding				0		Ovarian(137;0.101)				AAATGATACATGCAAAAGGTT	0.264													24	77					0	0	0.639603	0	0
CYB5B	80777	broad.mit.edu	37	16	69493023	69493023	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:69493023A>G	uc002exg.1	+	4	450	c.361A>G	c.(361-363)AGT>GGT	p.S121G	CYB5B_uc010cfl.1_Intron	NM_030579	NP_085056	O43169	CYB5B_HUMAN	cytochrome b5 outer mitochondrial membrane	117					electron transport chain|transport	integral to membrane|mitochondrial outer membrane	heme binding				0		Ovarian(137;0.101)				TACATGCAAAAGGTTAGTATC	0.269													25	83					0	0	0.667858	0	0
CDH15	1013	broad.mit.edu	37	16	89257739	89257739	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:89257739T>C	uc002fmt.2	+	9	1311	c.1234T>C	c.(1234-1236)TAC>CAC	p.Y412H		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	412	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		CTGCATCAGCTACTCCAAGGA	0.587													36	95					0	0	0.796494	0	0
TCF25	22980	broad.mit.edu	37	16	89961526	89961526	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:89961526G>T	uc002fpb.2	+	8	991	c.909G>T	c.(907-909)GAG>GAT	p.E303D	TCF25_uc002fpc.2_Missense_Mutation_p.E68D	NM_014972	NP_055787	Q9BQ70	TCF25_HUMAN	NULP1	303					heart development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(9;4.71e-08)|Lung NSC(15;0.000192)|all_lung(18;0.000319)|all_neural(9;0.0122)|all_hematologic(23;0.027)		BRCA - Breast invasive adenocarcinoma(80;0.0288)		AGGATCAGGAGATGGCTCGAG	0.572													27	26					3.6622e-26	4.06275e-26	0.788014	1	0
MYH13	8735	broad.mit.edu	37	17	10265744	10265744	+	Missense_Mutation	SNP	A	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr17:10265744A>T	uc002gmk.1	-	4	371	c.281T>A	c.(280-282)ATG>AAG	p.M94K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	94	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CAGGTGAGTCATCATGGCCAT	0.468													178	101					0	0	0.870114	0	0
ULK2	9706	broad.mit.edu	37	17	19699037	19699037	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr17:19699037A>G	uc002gwm.3	-	20	2508	c.1999T>C	c.(1999-2001)TCT>CCT	p.S667P	ULK2_uc002gwn.2_Missense_Mutation_p.S667P	NM_001142610	NP_001136082	Q8IYT8	ULK2_HUMAN	unc-51-like kinase 2	667					signal transduction		ATP binding|protein binding|protein serine/threonine kinase activity			skin(2)|large_intestine(1)|stomach(1)	4	all_cancers(12;4.97e-05)|all_epithelial(12;0.00362)|Breast(13;0.186)					GTACTGACAGATCTAAAAAGA	0.338													39	81					0	0	0.796494	0	0
G6PC	2538	broad.mit.edu	37	17	41059548	41059548	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr17:41059548T>A	uc002icb.1	+	3	428	c.349T>A	c.(349-351)TCT>ACT	p.S117T	G6PC_uc010whf.1_Intron	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	117	Lumenal (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		AGGGAGCCCCTCTGGCCATGC	0.418									Glycogen_Storage_Disease_type_Ia				17	50					0	0	0.539581	0	0
ACSF2	80221	broad.mit.edu	37	17	48539814	48539814	+	Silent	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr17:48539814T>C	uc002iqu.2	+	6	764	c.660T>C	c.(658-660)GAT>GAC	p.D220D	ACSF2_uc010wml.1_Silent_p.D177D|ACSF2_uc010wmm.1_Silent_p.D245D|ACSF2_uc010wmn.1_Silent_p.D207D|ACSF2_uc010wmo.1_Silent_p.D60D	NM_025149	NP_079425	Q96CM8	ACSF2_HUMAN	acyl-CoA synthetase family member 2 precursor	220					fatty acid metabolic process	mitochondrion	ATP binding|ligase activity				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			TCTCGGTGGATGCCCCTTTGC	0.627													37	134					0	0	0.819951	0	0
EPX	8288	broad.mit.edu	37	17	56281676	56281676	+	Silent	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr17:56281676T>C	uc002ivq.2	+	12	2126	c.2040T>C	c.(2038-2040)GGT>GGC	p.G680G		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	680					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						ACAATACCGGTATCACCACGG	0.512													39	98					0	0	0.812448	0	0
SLC25A19	60386	broad.mit.edu	37	17	73279572	73279572	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr17:73279572T>A	uc002jns.3	-	3	1301	c.391A>T	c.(391-393)ATG>TTG	p.M131L	SLC25A19_uc010dge.2_Intron|SLC25A19_uc002jnv.3_Missense_Mutation_p.M131L|SLC25A19_uc002jnu.3_Missense_Mutation_p.M131L|SLC25A19_uc002jnw.3_Missense_Mutation_p.M131L|SLC25A19_uc002jnt.3_Missense_Mutation_p.M131L	NM_021734	NP_068380	Q9HC21	TPC_HUMAN	solute carrier family 25, member 19	131	Helical; Name=3; (Potential).|Solcar 2.					integral to membrane|mitochondrial inner membrane	binding|deoxynucleotide transmembrane transporter activity			ovary(1)	1	all_cancers(13;5.98e-08)|all_epithelial(9;1.16e-08)|Breast(9;3.1e-08)		all cancers(21;6.82e-07)|Epithelial(20;6.86e-06)			AGGGTGGCCATACAGGCAGCC	0.607													41	31					0	0	0.853193	0	0
NFATC1	4772	broad.mit.edu	37	18	77170518	77170518	+	Silent	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr18:77170518G>T	uc010xfg.1	+	2	696	c.243G>T	c.(241-243)CCG>CCT	p.P81P	NFATC1_uc002lnc.1_Silent_p.P81P|NFATC1_uc010xff.1_Silent_p.P81P|NFATC1_uc002lnd.2_Silent_p.P81P|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Silent_p.P81P|NFATC1_uc010xfi.1_Silent_p.P68P|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Silent_p.P68P|NFATC1_uc002lng.2_Silent_p.P68P|NFATC1_uc010xfk.1_Silent_p.P68P	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	81					intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GCATCATCCCGCCGGCGGATC	0.721													57	82					1.82294e-38	2.07086e-38	0.870114	1	0
EMR1	2015	broad.mit.edu	37	19	6926601	6926601	+	Silent	SNP	A	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr19:6926601A>C	uc002mfw.2	+	16	2249	c.2211A>C	c.(2209-2211)GGA>GGC	p.G737G	EMR1_uc010dvc.2_Silent_p.G672G|EMR1_uc010dvb.2_Silent_p.G685G|EMR1_uc010xji.1_Silent_p.G596G|EMR1_uc010xjj.1_Silent_p.G560G	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	737	Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					AGGGCTATGGAATGCATAATC	0.512													42	67					0	0	0.827153	0	0
SNRPA	6626	broad.mit.edu	37	19	41265475	41265475	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr19:41265475G>A	uc002ooz.2	+	3	921	c.386G>A	c.(385-387)GGA>GAA	p.G129E	SNRPA_uc002opa.2_Missense_Mutation_p.G79E	NM_004596	NP_004587	P09012	SNRPA_HUMAN	small nuclear ribonucleoprotein polypeptide A	129						nucleoplasm|spliceosomal complex	nucleotide binding|protein binding|RNA binding			skin(2)|ovary(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			CAAGGCGGGGGAGCCACCCCC	0.662													38	45					0	0	0.804634	0	0
MEGF8	1954	broad.mit.edu	37	19	42838229	42838229	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr19:42838229T>A	uc002otl.3	+	3	1057	c.422T>A	c.(421-423)CTG>CAG	p.L141Q	MEGF8_uc002otm.3_5'Flank	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	141	Extracellular (Potential).|EGF-like 1.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				CGCTTCTCCCTGTGCCCGGGT	0.652													13	25					0	0	0.411799	0	0
TMEM150B	284417	broad.mit.edu	37	19	55824409	55824409	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr19:55824409C>T	uc010esw.1	-	8	693	c.520G>A	c.(520-522)GCC>ACC	p.A174T	TMEM150B_uc010yfu.1_Missense_Mutation_p.A174T|TMEM150B_uc010yfv.1_RNA|TMEM150B_uc010yfw.1_RNA	NM_001085488	NP_001078957	A6NC51	T150B_HUMAN	transmembrane protein 150B precursor	174	Helical; (Potential).					integral to membrane					0						AGCGAGCAGGCGTGGAGGACG	0.682													19	18					0	0	0.575678	0	0
ZNF547	284306	broad.mit.edu	37	19	57889118	57889118	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr19:57889118T>A	uc002qol.2	+	4	967	c.774T>A	c.(772-774)CAT>CAA	p.H258Q	ZNF547_uc002qpm.3_Missense_Mutation_p.H184Q|ZNF547_uc010ygx.1_Missense_Mutation_p.H258Q	NM_173631	NP_775902	Q8IVP9	ZN547_HUMAN	zinc finger protein 547	258	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCATTACACATCAGAGGGTTC	0.438													48	54					0	0	0.864702	0	0
CUL3	8452	broad.mit.edu	37	2	225379451	225379451	+	Silent	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr2:225379451G>T	uc002vny.2	-	4	801	c.417C>A	c.(415-417)GTC>GTA	p.V139V	CUL3_uc010zls.1_Silent_p.V73V|CUL3_uc010fwy.1_Silent_p.V145V	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	139					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		CCAAATTGTAGACGTTCTCCA	0.348													11	29					1.08611e-07	1.10162e-07	0.387290	1	0
CUL3	8452	broad.mit.edu	37	2	225422564	225422564	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr2:225422564C>T	uc002vny.2	-	2	460	c.76G>A	c.(76-78)GAT>AAT	p.D26N	CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Missense_Mutation_p.D32N	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	26					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		TATTTTTCATCCATGGTCATC	0.313													7	13					0	0	0.307466	0	0
NCL	4691	broad.mit.edu	37	2	232319963	232319963	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr2:232319963C>A	uc002vru.2	-	14	2213	c.2072G>T	c.(2071-2073)CGA>CTA	p.R691L		NM_005381	NP_005372	P19338	NUCL_HUMAN	nucleolin	691	Arg/Gly/Phe-rich.				angiogenesis	cell cortex|nucleolus|ribonucleoprotein complex	nucleotide binding|protein C-terminus binding|RNA binding|telomeric DNA binding			ovary(2)|pancreas(1)	3		Ovarian(221;1.34e-05)|Renal(207;0.0112)|Lung NSC(271;0.0339)|all_lung(227;0.0616)|all_hematologic(139;0.0748)|Hepatocellular(293;0.137)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.65e-111)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.014)|COAD - Colon adenocarcinoma(134;0.141)|STAD - Stomach adenocarcinoma(1183;0.18)		TCTGCCTCCTCGGAAGCCTCC	0.512													37	66					6.05902e-23	6.61831e-23	0.788014	1	0
SIRPB2	284759	broad.mit.edu	37	20	1460698	1460698	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr20:1460698T>C	uc002wfg.2	-	2	326	c.98A>G	c.(97-99)CAG>CGG	p.Q33R	SIRPB2_uc002wfh.3_Missense_Mutation_p.Q33R|SIRPB2_uc010zpr.1_5'UTR	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	33	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane					0						CCTGCTGCTCTGCCCAGAGGC	0.532													20	43					0	0	0.557998	0	0
TGM3	7053	broad.mit.edu	37	20	2290999	2290999	+	Silent	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr20:2290999C>A	uc002wfx.3	+	3	454	c.357C>A	c.(355-357)TCC>TCA	p.S119S		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	119					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	AGATCTTCTCCCAGGGCGGCA	0.562													121	190					9.11594e-60	1.06104e-59	0.870114	1	0
DDRGK1	65992	broad.mit.edu	37	20	3171443	3171443	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr20:3171443C>A	uc002wic.2	-	9	823	c.801G>T	c.(799-801)AAG>AAT	p.K267N	DDRGK1_uc010gaw.2_RNA	NM_023935	NP_076424	Q96HY6	DDRGK_HUMAN	DDRGK domain containing 1 precursor	267	PCI.			K->R: Impairs ufmylation.		endoplasmic reticulum	protein binding				0						TGTAGATGAACTTGCCCCGGT	0.627													19	18					3.99206e-14	4.13775e-14	0.557998	1	0
PLCB1	23236	broad.mit.edu	37	20	8678416	8678416	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr20:8678416G>A	uc002wnb.2	+	11	1156	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K	PLCB1_uc010zrb.1_Missense_Mutation_p.E284K|PLCB1_uc002wna.2_Missense_Mutation_p.E385K|PLCB1_uc002wnc.1_Missense_Mutation_p.E284K	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	385	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CATGACAACTGAAATATCTTT	0.483													36	52					0	0	0.788014	0	0
FAM182B	728882	broad.mit.edu	37	20	25848617	25848617	+	RNA	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr20:25848617A>G	uc002wvd.1	-	1		c.170T>C								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						ggcaggcctgaggctgggatg	0													2	10					0	0	0.115264	0	0
ZNF280B	140883	broad.mit.edu	37	22	22843552	22843552	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr22:22843552A>C	uc002zwc.1	-	4	948	c.172T>G	c.(172-174)TCA>GCA	p.S58A	LOC96610_uc011aim.1_Intron	NM_080764	NP_542942	Q86YH2	Z280B_HUMAN	zinc finger protein 280B	58					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		AAAATGTTTGAAACGACTGGT	0.408													46	65					0	0	0.853193	0	0
Unknown	0	broad.mit.edu	37	22	25853368	25853368	+	RNA	SNP	T	C	C	rs6423498	by1000genomes	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr22:25853368T>C	uc003abt.2	+	4		c.589T>C			uc003abu.2_RNA|uc003abv.2_RNA					Homo sapiens cDNA clone IMAGE:3542716, partial cds.																		CGGAGTGGCATGTAAGTGCAT	0.378													5	41					0	0	0.217242	0	0
WNT7A	7476	broad.mit.edu	37	3	13916593	13916593	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:13916593G>T	uc003bye.1	-	2	454	c.149C>A	c.(148-150)GCG>GAG	p.A50E		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	50					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						CTGGCAGATCGCCCGCTGTCT	0.592													41	102					1.15505e-17	1.24255e-17	0.847076	1	0
NR1D2	9975	broad.mit.edu	37	3	24003482	24003482	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:24003482C>T	uc003ccs.2	+	5	851	c.532C>T	c.(532-534)CGT>TGT	p.R178C	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.R103C	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	178					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						TCGGTTTGGTCGTATTCCTAA	0.343													20	28					0	0	0.608945	0	0
PTH1R	5745	broad.mit.edu	37	3	46935398	46935398	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:46935398T>G	uc003cqm.2	+	4	280	c.77T>G	c.(76-78)GTG>GGG	p.V26G	PTH1R_uc003cqn.2_Missense_Mutation_p.V26G	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	26						cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						GCTTGGCAGGTGGATGCAGAT	0.572									Ollier_disease_/_Maffuci_syndrome				6	12					0	0	0.539581	0	0
SCAP	22937	broad.mit.edu	37	3	47461039	47461039	+	Silent	SNP	C	T	T	rs141351370	byFrequency	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:47461039C>T	uc003crh.1	-	13	1974	c.1719G>A	c.(1717-1719)CCG>CCA	p.P573P	SCAP_uc011baz.1_Silent_p.P318P|SCAP_uc003crg.2_Silent_p.P181P	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	573	Lumenal (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		AGGCAGGGTCCGGGTGGCTGG	0.647													50	115					0	0	0.870114	0	0
CNTN3	5067	broad.mit.edu	37	3	74474021	74474021	+	Silent	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:74474021G>A	uc003dpm.1	-	4	509	c.429C>T	c.(427-429)CTC>CTT	p.L143L		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	143	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		GGGGGCCGCAGAGCAGCACAA	0.433													9	37					0	0	0.361761	0	0
SKIL	6498	broad.mit.edu	37	3	170079130	170079130	+	Silent	SNP	A	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:170079130A>T	uc003fgu.2	+	2	1723	c.1011A>T	c.(1009-1011)GGA>GGT	p.G337G	SKIL_uc011bps.1_Silent_p.G317G|SKIL_uc003fgv.2_Silent_p.G337G|SKIL_uc003fgw.2_Silent_p.G337G	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	337					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			AATACTTAGGAACACCTGAAG	0.363													28	86					0	0	0.693898	0	0
CRMP1	1400	broad.mit.edu	37	4	5827300	5827300	+	Silent	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr4:5827300A>G	uc003gip.2	-	14	1649	c.1548T>C	c.(1546-1548)GCT>GCC	p.A516A	EVC_uc003gim.1_Intron|CRMP1_uc003gin.1_Silent_p.A428A|CRMP1_uc003giq.2_Silent_p.A516A|CRMP1_uc003gir.2_Silent_p.A511A|CRMP1_uc003gis.2_Silent_p.A630A	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2	516					axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		TGGCTGAAGGAGCGGGAGTTG	0.517													33	51					0	0	0.760397	0	0
ALB	213	broad.mit.edu	37	4	74275161	74275161	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr4:74275161A>C	uc003hgs.3	+	5	645	c.572A>C	c.(571-573)GAA>GCA	p.E191A	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Missense_Mutation_p.E191A|ALB_uc010iii.2_Missense_Mutation_p.E76A|ALB_uc003hgu.3_Missense_Mutation_p.E41A|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_Missense_Mutation_p.E81A|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'UTR	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	191	Albumin 1.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	GCTTTTACAGAATGTTGCCAA	0.358													33	56					0	0	0.769981	0	0
BMP2K	55589	broad.mit.edu	37	4	79832296	79832296	+	Silent	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr4:79832296A>G	uc003hlk.2	+	16	2761	c.2595A>G	c.(2593-2595)GCA>GCG	p.A865A	PAQR3_uc003hlm.2_Intron|PAQR3_uc003hln.2_Intron|uc010ijm.1_5'Flank	NM_198892	NP_942595	Q9NSY1	BMP2K_HUMAN	BMP-2 inducible kinase isoform a	865						nucleus	ATP binding|protein serine/threonine kinase activity			lung(1)	1						CCTTCTTTGCAGTGCGTGCTC	0.473													32	29					0	0	0.769981	0	0
LARP7	51574	broad.mit.edu	37	4	113574375	113574375	+	Missense_Mutation	SNP	A	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr4:113574375A>C	uc003iay.2	+	11	1837	c.1559A>C	c.(1558-1560)AAA>ACA	p.K520T	LARP7_uc003iaz.2_Missense_Mutation_p.K527T|LARP7_uc003iba.2_Missense_Mutation_p.K441T|LARP7_uc003ibb.2_Missense_Mutation_p.K520T	NM_016648	NP_057732	Q4G0J3	LARP7_HUMAN	La ribonucleoprotein domain family, member 7	520					RNA processing	nucleoplasm|ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(3)	3		Ovarian(17;0.0443)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		CACTGCTGGAAACTCGAGATC	0.348													20	24					0	0	0.624587	0	0
NUDT6	11162	broad.mit.edu	37	4	123814307	123814307	+	Silent	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr4:123814307C>A	uc003iew.2	-	5	659	c.627G>T	c.(625-627)CGG>CGT	p.R209R	FGF2_uc003iev.1_3'UTR|NUDT6_uc003iex.2_Silent_p.R40R	NM_007083	NP_009014	P53370	NUDT6_HUMAN	nudix-type motif 6 isoform a	209	Nudix hydrolase.					mitochondrion|nucleus	growth factor activity|hydrolase activity				0						TGTGCTGTTGCCGAATACTCA	0.403													54	79					3.48956e-15	3.6705e-15	0.870114	1	0
KIAA0947	23379	broad.mit.edu	37	5	5460831	5460831	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr5:5460831A>G	uc003jdm.3	+	13	1606	c.1384A>G	c.(1384-1386)AAA>GAA	p.K462E		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	462										ovary(1)|central_nervous_system(1)	2						AGTTGGTGAAAAACACTGGAC	0.408													20	60					0	0	0.575678	0	0
TRIO	7204	broad.mit.edu	37	5	14297362	14297362	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr5:14297362A>G	uc003jff.2	+	7	1364	c.1358A>G	c.(1357-1359)AAG>AGG	p.K453R	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Missense_Mutation_p.K404R|TRIO_uc003jfh.1_Missense_Mutation_p.K102R	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	453					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					TTCCACCAGAAGGCCGAAAAG	0.547													35	24					0	0	0.760397	0	0
WDR70	55100	broad.mit.edu	37	5	37396478	37396478	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr5:37396478G>A	uc003jkv.2	+	5	356	c.298G>A	c.(298-300)GAT>AAT	p.D100N	WDR70_uc010iva.1_Missense_Mutation_p.D100N	NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	100	Ser-rich.									ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TATTTTCAGGGATACGAGCAG	0.393													43	102					0	0	0.864702	0	0
GPR98	84059	broad.mit.edu	37	5	90024517	90024517	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr5:90024517T>G	uc003kju.2	+	49	10289	c.10193T>G	c.(10192-10194)TTG>TGG	p.L3398W	GPR98_uc003kjt.2_Missense_Mutation_p.L1104W|GPR98_uc003kjv.2_Missense_Mutation_p.L998W	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3398	EAR 4.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGCTTCGTGTTGCATCAAAAA	0.453													155	132					0	0	0.870114	0	0
PPIC	5480	broad.mit.edu	37	5	122364999	122364999	+	Splice_Site	SNP	C	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr5:122364999C>G	uc003kth.2	-	2	336	c.231_splice	c.e2+1	p.E77_splice	PPIC_uc011cwp.1_Missense_Mutation_p.V78L	NM_000943	NP_000934	P45877	PPIC_HUMAN	peptidylprolyl isomerase C						protein folding|signal transduction	cytoplasm	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity|unfolded protein binding			ovary(1)	1		all_cancers(142;0.0168)|Prostate(80;0.0322)|Lung NSC(810;0.102)|all_lung(232;0.163)	KIRC - Kidney renal clear cell carcinoma(527;0.0897)|Kidney(363;0.137)	OV - Ovarian serous cystadenocarcinoma(64;0.000331)|Epithelial(69;0.000553)|all cancers(49;0.00505)	L-Proline(DB00172)	TTGAGACATACCTCTCCTGTT	0.353													44	44					0	0	0.847076	0	0
PCDH12	51294	broad.mit.edu	37	5	141336768	141336768	+	Missense_Mutation	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr5:141336768A>G	uc003llx.2	-	1	1860	c.649T>C	c.(649-651)TAT>CAT	p.Y217H		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	217	Extracellular (Potential).|Cadherin 2.				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCATTGTCATAGGCAGTTAAC	0.493													104	69					0	0	0.870114	0	0
SIRT5	23408	broad.mit.edu	37	6	13595708	13595708	+	Splice_Site	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr6:13595708G>T	uc003nay.2	+	6	772	c.476_splice	c.e6-1	p.G159_splice	SIRT5_uc003naw.2_Splice_Site_p.G159_splice|SIRT5_uc003nax.2_Splice_Site_p.G51_splice|SIRT5_uc011dit.1_Splice_Site_p.G159_splice	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1						chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	GTATTTTTCAGGTAGCTTATT	0.338													24	32					1.22574e-08	1.25219e-08	0.624587	1	0
MDC1	9656	broad.mit.edu	37	6	30668243	30668243	+	Nonstop_Mutation	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr6:30668243C>A	uc003nrg.3	-	15	6709	c.6269G>T	c.(6268-6270)TGA>TTA	p.*2090L	MDC1_uc003nrf.3_Nonstop_Mutation_p.*721L	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	2090					cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GTGGAGTTCTCAGGTGGATGA	0.512								Other_conserved_DNA_damage_response_genes					64	112					2.66076e-39	3.047e-39	0.870114	1	0
XPO5	57510	broad.mit.edu	37	6	43527956	43527956	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr6:43527956T>G	uc003ovp.2	-	11	1391	c.1180A>C	c.(1180-1182)ATA>CTA	p.I394L		NM_020750	NP_065801	Q9HAV4	XPO5_HUMAN	exportin 5	394					gene silencing by RNA	cytosol|nucleoplasm	protein binding|tRNA binding			skin(2)|breast(1)|kidney(1)	4	all_cancers(18;2.08e-05)|Lung NSC(15;0.000907)|all_lung(25;0.00243)		all cancers(41;0.000321)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0524)			TATTTTGGTATTATTGCTAAT	0.378													12	16					0	0	0.387290	0	0
CYB5R4	51167	broad.mit.edu	37	6	84569533	84569533	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr6:84569533C>T	uc003pkf.2	+	1	164	c.32C>T	c.(31-33)GCC>GTC	p.A11V		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	11					cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		TCTTTCCCGGCCCCCAGGTCG	0.692											OREG0017553	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	28					0	0	0.681144	0	0
ARID1B	57492	broad.mit.edu	37	6	157510846	157510846	+	Silent	SNP	A	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr6:157510846A>C	uc003qqn.2	+	14	3719	c.3567A>C	c.(3565-3567)CCA>CCC	p.P1189P	ARID1B_uc003qqo.2_Silent_p.P1149P|ARID1B_uc003qqp.2_Silent_p.P1136P	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1194					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CAGAGGTTCCAGGTGACCTGA	0.537													47	81					0	0	0.870114	0	0
NOD1	10392	broad.mit.edu	37	7	30475634	30475634	+	Missense_Mutation	SNP	G	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr7:30475634G>T	uc003tav.2	-	11	3124	c.2601C>A	c.(2599-2601)AAC>AAA	p.N867K		NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	867	LRR 7.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						CTAGAGACGTGTTCTGCTGCA	0.343													34	34					1.30015e-28	1.45371e-28	0.804634	1	0
ADCYAP1R1	117	broad.mit.edu	37	7	31126125	31126125	+	Missense_Mutation	SNP	T	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr7:31126125T>A	uc003tca.1	+	10	1020	c.797T>A	c.(796-798)TTC>TAC	p.F266Y	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.F245Y|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.F266Y|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.F266Y|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.F266Y|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	266	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						AGGAGATACTTCTACTGGTAC	0.527													18	68					0	0	0.592651	0	0
HIP1	3092	broad.mit.edu	37	7	75211434	75211434	+	Missense_Mutation	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr7:75211434C>A	uc003uds.1	-	6	540	c.499G>T	c.(499-501)GAC>TAC	p.D167Y	HIP1_uc011kfz.1_Missense_Mutation_p.D44Y	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	167					activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						AGCTGGCGGTCACTCATCTGC	0.537			T	PDGFRB	CMML								25	35					6.36457e-07	6.40971e-07	0.667858	1	0
SAMD9L	219285	broad.mit.edu	37	7	92763870	92763870	+	Missense_Mutation	SNP	T	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr7:92763870T>G	uc003umh.1	-	5	2631	c.1415A>C	c.(1414-1416)CAA>CCA	p.Q472P	SAMD9L_uc003umj.1_Missense_Mutation_p.Q472P|SAMD9L_uc003umi.1_Missense_Mutation_p.Q472P|SAMD9L_uc010lfb.1_Missense_Mutation_p.Q472P|SAMD9L_uc003umk.1_Missense_Mutation_p.Q472P|SAMD9L_uc010lfc.1_Missense_Mutation_p.Q472P|SAMD9L_uc010lfd.1_Missense_Mutation_p.Q472P|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	472										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			GTCTTCATATTGATTTGGAAA	0.408													77	53					0	0	0.870114	0	0
CDCA2	157313	broad.mit.edu	37	8	25323728	25323728	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:25323728G>A	uc003xep.1	+	5	904	c.425G>A	c.(424-426)AGA>AAA	p.R142K	PPP2R2A_uc003xek.2_Intron|CDCA2_uc011lae.1_Missense_Mutation_p.R142K|CDCA2_uc003xeq.1_Missense_Mutation_p.R127K|CDCA2_uc003xer.1_5'Flank	NM_152562	NP_689775	Q69YH5	CDCA2_HUMAN	cell division cycle associated 2	142					cell division|mitosis	cytoplasm|nucleus					0		all_cancers(63;0.0378)|Ovarian(32;0.000878)|all_epithelial(46;0.0162)|Breast(100;0.0164)|Prostate(55;0.191)		UCEC - Uterine corpus endometrioid carcinoma (27;0.022)|Epithelial(17;1.37e-11)|Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0443)		AACACTTTAAGAGAACGAATA	0.403													31	36					0	0	0.769981	0	0
ADRA1A	148	broad.mit.edu	37	8	26623625	26623625	+	Missense_Mutation	SNP	C	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:26623625C>G	uc003xfg.1	-	3	1747	c.1311G>C	c.(1309-1311)GAG>GAC	p.E437D	ADRA1A_uc003xfc.1_Intron|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Intron|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron	NM_033304	NP_150647	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 4	Error:Variant_position_missing_in_P35348_after_alignment					activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	GCTTGATATGCTCTCTGCAAT	0.423													43	71					0	0	0.870114	0	0
EXTL3	2137	broad.mit.edu	37	8	28574533	28574533	+	Silent	SNP	G	A	A	rs112390366	byFrequency	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:28574533G>A	uc003xgz.1	+	3	1550	c.957G>A	c.(955-957)CTG>CTA	p.L319L		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	319	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		TATCACCGCTGGTCCATGCCA	0.537													6	72					0	0	0.217242	0	0
PLAT	5327	broad.mit.edu	37	8	42040399	42040399	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:42040399T>C	uc003xos.2	-	8	850	c.641A>G	c.(640-642)GAC>GGC	p.D214G	PLAT_uc010lxf.1_Missense_Mutation_p.D131G|PLAT_uc010lxg.1_Intron|PLAT_uc003xot.2_Missense_Mutation_p.D168G|PLAT_uc011lcm.1_Missense_Mutation_p.D125G|PLAT_uc011lcn.1_Missense_Mutation_p.D88G	NM_000930	NP_000921	P00750	TPA_HUMAN	plasminogen activator, tissue isoform 1	214					blood coagulation|fibrinolysis|negative regulation of proteolysis|protein modification process|proteolysis	cell surface|cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			breast(1)|skin(1)	2	all_cancers(6;3.84e-26)|all_epithelial(6;9.61e-28)|all_lung(13;7.2e-13)|Lung NSC(13;1.18e-11)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000378)|Lung NSC(58;0.00145)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00135)|Colorectal(10;0.00165)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)		Alteplase(DB00009)|Aminocaproic Acid(DB00513)|Anistreplase(DB00029)|Iloprost(DB01088)|Reteplase(DB00015)|Tenecteplase(DB00031)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AAAGTAGCAGTCACTGTTTCC	0.537													71	83					0	0	0.870114	0	0
RP1	6101	broad.mit.edu	37	8	55538827	55538827	+	Silent	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:55538827C>T	uc003xsd.1	+	4	2533	c.2385C>T	c.(2383-2385)ATC>ATT	p.I795I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	795					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAAGAGAAATCGGTCAAAGAG	0.284													3	30					0	0	0.150653	0	0
CHD7	55636	broad.mit.edu	37	8	61707678	61707678	+	Missense_Mutation	SNP	G	A	A	rs141947938	by1000genomes	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:61707678G>A	uc003xue.2	+	4	2707	c.2230G>A	c.(2230-2232)GGT>AGT	p.G744S		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	744					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity	p.556_871dup(1)		ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TGAGGACCCAGGTGTTCAGGT	0.428													6	109					0	0	0.278610	0	0
CHD7	55636	broad.mit.edu	37	8	61769429	61769429	+	Silent	SNP	A	G	G	rs61742801	by1000genomes	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:61769429A>G	uc003xue.2	+	34	8067	c.7590A>G	c.(7588-7590)AAA>AAG	p.K2530K		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2530					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TGAGCCACAAACGGACGTCAT	0.542													7	114					0	0	0.278610	0	0
RBM12B	389677	broad.mit.edu	37	8	94748606	94748606	+	Silent	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:94748606A>G	uc003yfz.2	-	3	226	c.33T>C	c.(31-33)CCT>CCC	p.P11P		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	11							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			CCGCAATAAAAGGAAGCCCCA	0.443													43	63					0	0	0.847076	0	0
VPS13B	157680	broad.mit.edu	37	8	100147934	100147934	+	Silent	SNP	A	G	G	rs145969836	byFrequency	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:100147934A>G	uc003yiv.2	+	11	1647	c.1536A>G	c.(1534-1536)GAA>GAG	p.E512E	VPS13B_uc003yiw.2_Silent_p.E512E|VPS13B_uc003yit.2_Silent_p.E512E|VPS13B_uc003yiu.1_Silent_p.E512E|VPS13B_uc003yix.1_5'Flank	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	512					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CTCGCGCAGAATTTATCTTGG	0.348													4	30					0	0	0.150653	0	0
VPS13B	157680	broad.mit.edu	37	8	100155332	100155332	+	Silent	SNP	T	C	C	rs145648860	byFrequency	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:100155332T>C	uc003yiv.2	+	13	1893	c.1782T>C	c.(1780-1782)ATT>ATC	p.I594I	VPS13B_uc003yiw.2_Silent_p.I594I|VPS13B_uc003yit.2_Silent_p.I594I|VPS13B_uc003yiu.1_Silent_p.I594I|VPS13B_uc003yix.1_Silent_p.I65I	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	594					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TGCATAGGATTTTGAAAATGA	0.383													8	114					0	0	0.278610	0	0
HAS2	3037	broad.mit.edu	37	8	122626358	122626358	+	Silent	SNP	A	G	G			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:122626358A>G	uc003yph.2	-	4	2188	c.1650T>C	c.(1648-1650)CTT>CTC	p.L550L		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	550	Extracellular (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			ATCATACATCAAGCACCATGT	0.443													49	76					0	0	0.870114	0	0
EIF2C2	27161	broad.mit.edu	37	8	141542542	141542542	+	Missense_Mutation	SNP	T	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr8:141542542T>C	uc003yvn.2	-	18	2484	c.2444A>G	c.(2443-2445)TAC>TGC	p.Y815C	EIF2C2_uc010men.2_Missense_Mutation_p.Y738C|EIF2C2_uc010meo.2_Missense_Mutation_p.Y781C	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	815	Piwi.				mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CACCAGGTGGTACCTGGCCCG	0.597													19	23					0	0	0.539581	0	0
ZNF462	58499	broad.mit.edu	37	9	109691965	109691965	+	Silent	SNP	T	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr9:109691965T>A	uc004bcz.2	+	3	6061	c.5772T>A	c.(5770-5772)CGT>CGA	p.R1924R	ZNF462_uc010mto.2_Silent_p.R1772R|ZNF462_uc004bda.2_Silent_p.R1772R|ZNF462_uc011lvz.1_5'Flank	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1924					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						GTGCCAAACGTCAGGAGAGGA	0.448													24	59					0	0	0.654019	0	0
RABEPK	10244	broad.mit.edu	37	9	127990238	127990238	+	Silent	SNP	C	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr9:127990238C>A	uc004bpi.2	+	7	749	c.576C>A	c.(574-576)CCC>CCA	p.P192P	RABEPK_uc004bpj.2_Silent_p.P141P|RABEPK_uc004bpk.2_Silent_p.P192P|RABEPK_uc004bpl.1_Silent_p.P141P|RABEPK_uc004bpm.2_Silent_p.P192P	NM_005833	NP_005824	Q7Z6M1	RABEK_HUMAN	Rab9 effector protein with kelch motifs	192	Kelch 3.				receptor-mediated endocytosis|vesicle docking involved in exocytosis	endosome membrane|plasma membrane				ovary(1)	1						CTCCATCTCCCCGGCATGGTC	0.458													28	43					2.08457e-15	2.20902e-15	0.750413	1	0
OGT	8473	broad.mit.edu	37	X	70757686	70757686	+	Missense_Mutation	SNP	C	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chrX:70757686C>T	uc004eaa.1	+	3	443	c.226C>T	c.(226-228)CAC>TAC	p.H76Y	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Missense_Mutation_p.H66Y|OGT_uc011mpw.1_Missense_Mutation_p.H76Y	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	76					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					CAGATCTGCTCACTTTAGCAC	0.453													11	65					0	0	0.435327	0	0
ACTRT1	139741	broad.mit.edu	37	X	127186092	127186092	+	Missense_Mutation	SNP	G	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chrX:127186092G>A	uc004eum.2	-	1	291	c.94C>T	c.(94-96)CGC>TGC	p.R32C		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	32						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						ATGACATGGCGGGGTCCAATC	0.448													6	64					0	0	0.217242	0	0
CASP9	842	broad.mit.edu	37	1	15844628	15844628	+	Frame_Shift_Del	DEL	C	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:15844628delC	uc001awn.2	-	2	490	c.395delG	c.(394-396)GGTfs	p.G132fs	CASP9_uc001awm.1_Frame_Shift_Del_p.G132fs|CASP9_uc001awo.2_Frame_Shift_Del_p.G132fs|CASP9_uc001awp.2_5'UTR|CASP9_uc009voi.2_Intron|CASP9_uc010obm.1_Frame_Shift_Del_p.G49fs|CASP9_uc001awq.2_Frame_Shift_Del_p.G49fs	NM_001229	NP_001220	P55211	CASP9_HUMAN	caspase 9 isoform alpha preproprotein	132					activation of caspase activity by cytochrome c|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol	cysteine-type endopeptidase activity|enzyme activator activity|protein binding			central_nervous_system(1)|kidney(1)	2		Breast(348;0.000207)|all_lung(284;0.000211)|Colorectal(325;0.000259)|Lung NSC(340;0.000269)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;8.49e-07)|COAD - Colon adenocarcinoma(227;4.36e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00013)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00763)|READ - Rectum adenocarcinoma(331;0.0655)		TCCTCCAGAACCAATGTCCAC	0.517													43	69	---	---	---	---					
RAB7L1	8934	broad.mit.edu	37	1	205740780	205740780	+	Frame_Shift_Del	DEL	C	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:205740780delC	uc001hdf.3	-	4	538	c.198delG	c.(196-198)GGGfs	p.G66fs	RAB7L1_uc009xbp.2_5'UTR|RAB7L1_uc001hde.3_Frame_Shift_Del_p.G66fs|RAB7L1_uc010prr.1_Frame_Shift_Del_p.G42fs|RAB7L1_uc009xbq.2_Intron	NM_003929	NP_003920	O14966	RAB7L_HUMAN	RAB7, member RAS oncogene family-like 1 isoform	66	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)	1	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			AGCGCTCCTGCCCTGGGGAGA	0.473													30	80	---	---	---	---					
ARID4B	51742	broad.mit.edu	37	1	235490233	235490235	+	Translation_Start_Site	DEL	ATG	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr1:235490233_235490235delATG	uc001hwq.2	-	2					ARID4B_uc001hwr.2_Translation_Start_Site|ARID4B_uc001hws.3_Translation_Start_Site|ARID4B_uc001hwu.1_Translation_Start_Site|GGPS1_uc001hwv.2_5'Flank|GGPS1_uc001hww.2_5'Flank|GGPS1_uc001hwx.2_5'Flank|GGPS1_uc001hwy.2_5'Flank	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TCTTACCTTCATGATGACTCTGG	0.522													56	103	---	---	---	---					
QSER1	79832	broad.mit.edu	37	11	32955335	32955336	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr11:32955335_32955336delGC	uc001mty.2	+	4	2411_2412	c.2144_2145delGC	c.(2143-2145)GGCfs	p.G715fs	QSER1_uc001mtz.1_Frame_Shift_Del_p.G476fs|QSER1_uc001mua.2_Frame_Shift_Del_p.G220fs	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	715	Gln-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					TTAGGGCATGGCCATCAGGCAT	0.411													40	67	---	---	---	---					
ZFP106	64397	broad.mit.edu	37	15	42710119	42710120	+	Frame_Shift_Ins	INS	-	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr15:42710119_42710120insA	uc001zpw.2	-	18	5813_5814	c.5478_5479insT	c.(5476-5481)GTTGTAfs	p.V1826fs	ZFP106_uc001zpu.2_Frame_Shift_Ins_p.V924fs|ZFP106_uc001zpv.2_Frame_Shift_Ins_p.V1011fs|ZFP106_uc001zpx.2_Frame_Shift_Ins_p.V1054fs	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	1826_1827	C2H2-type 2; atypical.					nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		AAATGATCTACAACGCCAAATA	0.465													20	33	---	---	---	---					
SLC5A11	115584	broad.mit.edu	37	16	24921737	24921739	+	In_Frame_Del	DEL	CAG	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:24921737_24921739delCAG	uc002dmu.2	+	15	1993_1995	c.1761_1763delCAG	c.(1759-1764)GCCAGC>GCC	p.S592del	SLC5A11_uc002dms.2_In_Frame_Del_p.S528del|SLC5A11_uc010vcd.1_In_Frame_Del_p.S557del|SLC5A11_uc002dmt.2_In_Frame_Del_p.S436del|SLC5A11_uc010vce.1_In_Frame_Del_p.S522del|SLC5A11_uc010bxt.2_In_Frame_Del_p.S528del|SLC5A11_uc002dmv.2_In_Frame_Del_p.S215del	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	592	Cytoplasmic (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		TGCCAGAGGCCAGCAGCAGCAGC	0.542													8	166	---	---	---	---					
RBL2	5934	broad.mit.edu	37	16	53513071	53513071	+	Frame_Shift_Del	DEL	A	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:53513071delA	uc002ehi.3	+	18	2827	c.2709delA	c.(2707-2709)ACAfs	p.T903fs	RBL2_uc002ehj.2_Frame_Shift_Del_p.T613fs|RBL2_uc010vgw.1_Intron	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	903	Domain B.|Pocket; binds E1A.				cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GCCAGGTCACAAAAGAAGATA	0.338													73	52	---	---	---	---					
BCMO1	53630	broad.mit.edu	37	16	81295815	81295821	+	Frame_Shift_Del	DEL	AAGACTT	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr16:81295815_81295821delAAGACTT	uc002fgn.1	+	4	616_622	c.398_404delAAGACTT	c.(397-405)GAAGACTTCfs	p.E133fs	BCMO1_uc002fgm.1_Frame_Shift_Del_p.E133fs|BCMO1_uc010vnp.1_Frame_Shift_Del_p.E64fs	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	133_135					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						AAGTGCGGAGAAGACTTCTACGCGACC	0.469													77	203	---	---	---	---					
TYK2	7297	broad.mit.edu	37	19	10464284	10464285	+	Frame_Shift_Ins	INS	-	T	T			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr19:10464284_10464285insT	uc002moc.3	-	21	3324_3325	c.2946_2947insA	c.(2944-2949)CCCCTGfs	p.P982fs	TYK2_uc010dxe.2_Frame_Shift_Ins_p.P797fs	NM_003331	NP_003322	P29597	TYK2_HUMAN	tyrosine kinase 2	982_983	Protein kinase 2.				intracellular protein kinase cascade|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|large_intestine(2)|ovary(1)|breast(1)	9			OV - Ovarian serous cystadenocarcinoma(20;1.77e-09)|Epithelial(33;3.92e-06)|all cancers(31;8.95e-06)			AGGCTGCCCAGGGGCACGTACT	0.723													11	12	---	---	---	---					
LYPD3	27076	broad.mit.edu	37	19	43969653	43969655	+	In_Frame_Del	DEL	AGC	-	-	rs141441894	byFrequency	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr19:43969653_43969655delAGC	uc002owl.1	-	1	177_179	c.69_71delGCT	c.(67-72)CTGCTT>CTT	p.23_24LL>L	LYPD3_uc002owm.2_In_Frame_Del_p.23_24LL>L	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	23_24						anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				ACCTCCGCGAAGCAGCAGCAGCA	0.675													7	226	---	---	---	---					
COL5A2	1290	broad.mit.edu	37	2	189901411	189901411	+	Frame_Shift_Del	DEL	G	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr2:189901411delG	uc002uqk.2	-	52	4319	c.4044delC	c.(4042-4044)ACCfs	p.T1348fs	COL5A2_uc010frx.2_Frame_Shift_Del_p.T924fs	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	1348	Fibrillar collagen NC1.				axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TGGCCCACCAGGTTTTACGTG	0.378													17	23	---	---	---	---					
C21orf99	149992	broad.mit.edu	37	21	14439225	14439226	+	RNA	INS	-	A	A			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr21:14439225_14439226insA	uc002yja.3	+	10		c.2743_2744insA				NR_026916				Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						TATATTAAATGAAAAATTAGGG	0.287													2	4	---	---	---	---					
CCR5	1234	broad.mit.edu	37	3	46415305	46415307	+	In_Frame_Del	DEL	CAG	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:46415305_46415307delCAG	uc003cpo.3	+	3	1034_1036	c.912_914delCAG	c.(910-915)TTCAGA>TTA	p.304_305FR>L	CCR5_uc010hjd.2_In_Frame_Del_p.304_305FR>L	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	304_305	Cytoplasmic (Potential).				cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	GGGAGAAGTTCAGAAACTACCTC	0.493													168	209	---	---	---	---					
GSK3B	2932	broad.mit.edu	37	3	119582397	119582398	+	Frame_Shift_Ins	INS	-	C	C			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:119582397_119582398insC	uc003edo.2	-	9	1947_1948	c.964_965insG	c.(964-966)GAGfs	p.E322fs	GSK3B_uc003edn.2_Frame_Shift_Ins_p.E335fs|GSK3B_uc003edm.2_5'UTR	NM_001146156	NP_001139628	P49841	GSK3B_HUMAN	glycogen synthase kinase 3 beta isoform 2	322	Protein kinase.				axon guidance|epithelial to mesenchymal transition|ER overload response|glycogen metabolic process|hippocampus development|negative regulation of apoptosis|negative regulation of protein binding|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|positive regulation of cell-matrix adhesion|positive regulation of protein complex assembly|positive regulation of protein export from nucleus|positive regulation of Rac GTPase activity|regulation of microtubule-based process|superior temporal gyrus development	Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|nucleus|plasma membrane	ATP binding|beta-catenin binding|NF-kappaB binding|p53 binding|protein kinase A catalytic subunit binding|protein serine/threonine kinase activity|RNA polymerase II transcription factor binding|tau-protein kinase activity|ubiquitin protein ligase binding			lung(2)	2				GBM - Glioblastoma multiforme(114;0.24)	Lithium(DB01356)	TGGTGTATACTCCAGCAGACGG	0.450													39	84	---	---	---	---					
SEC61A1	29927	broad.mit.edu	37	3	127778945	127778945	+	Frame_Shift_Del	DEL	T	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:127778945delT	uc003ekb.2	+	6	537	c.353delT	c.(352-354)TTAfs	p.L118fs	SEC61A1_uc003ekc.2_Frame_Shift_Del_p.L65fs|SEC61A1_uc003ekd.2_5'UTR	NM_013336	NP_037468	P61619	S61A1_HUMAN	Sec61 alpha 1 subunit	118	Helical; (Potential).				protein targeting to ER	integral to endoplasmic reticulum membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|protein binding|ribosome binding			ovary(1)	1						TCAATTCTAGTATTTGGCATG	0.438													33	113	---	---	---	---					
DBR1	51163	broad.mit.edu	37	3	137880741	137880743	+	In_Frame_Del	DEL	TCG	-	-	rs150114751	byFrequency	TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr3:137880741_137880743delTCG	uc003erv.2	-	8	1759_1761	c.1623_1625delCGA	c.(1621-1626)GATGAT>GAT	p.541_542DD>D	DBR1_uc003eru.2_In_Frame_Del_p.490_491DD>D|DBR1_uc003ert.2_In_Frame_Del_p.309_310DD>D	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	541_542						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						TTAAGCTGCATCGTCATCATCAT	0.251													7	178	---	---	---	---					
PPARGC1B	133522	broad.mit.edu	37	5	149216400	149216402	+	In_Frame_Del	DEL	CAG	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr5:149216400_149216402delCAG	uc003lrc.2	+	8	2424_2426	c.2382_2384delCAG	c.(2380-2385)GACAGC>GAC	p.S799del	PPARGC1B_uc003lrb.1_In_Frame_Del_p.S799del|PPARGC1B_uc003lrd.2_In_Frame_Del_p.S760del|PPARGC1B_uc003lrf.2_In_Frame_Del_p.S778del|PPARGC1B_uc003lre.1_In_Frame_Del_p.S778del	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	799	Glu-rich.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TCTTTGAAGACAGCAGCAGCAGC	0.453													10	297	---	---	---	---					
PRR3	80742	broad.mit.edu	37	6	30525928	30525928	+	Frame_Shift_Del	DEL	A	-	-			TCGA-A4-8516-01A-11D-2396-08	TCGA-A4-8516-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	fb836423-fc3f-4be5-a6a6-3bc134f2f6a9	a350b29c-6d99-40f4-80bb-66973f20b337	g.chr6:30525928delA	uc003nqi.1	+	2	474	c.108delA	c.(106-108)GGAfs	p.G36fs	GNL1_uc011dmi.1_5'Flank|GNL1_uc011dmj.1_5'Flank|GNL1_uc011dmk.1_5'Flank|GNL1_uc003nqh.2_5'Flank|PRR3_uc003nqj.1_Intron	NM_025263	NP_079539	P79522	PRR3_HUMAN	proline-rich protein 3 isoform a	36	Pro-rich.						nucleic acid binding|zinc ion binding				0						TGCTCTTAGGACCACCCAGCC	0.458													35	77	---	---	---	---					
