Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LRIG2	9860	broad.mit.edu	37	1	113616165	113616165	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:113616165C>A	uc001edf.1	+	1	335	c.137C>A	c.(136-138)CCC>CAC	p.P46H	LRIG2_uc009wgn.1_5'UTR|uc001ede.1_5'Flank	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	46	LRRNT.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TGCCCCGCGCCCTGCTCCTGC	0.652											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	94	305					7.68471e-68	9.03472e-68	0.323286	1	0
ATP1A1	476	broad.mit.edu	37	1	116941400	116941400	+	Missense_Mutation	SNP	G	C	C	rs11540954		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:116941400G>C	uc001ege.2	+	16	2621	c.2282G>C	c.(2281-2283)GGA>GCA	p.G761A	ATP1A1_uc010owv.1_Missense_Mutation_p.G730A|ATP1A1_uc010oww.1_Missense_Mutation_p.G761A|ATP1A1_uc010owx.1_Missense_Mutation_p.G730A|C1orf203_uc009whb.2_Intron|ATP1A1_uc001egh.2_5'Flank	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	761	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	ATTGTGACTGGAGTAGAGGAA	0.438													31	62					0	0	0.153744	0	0
ATP1B1	481	broad.mit.edu	37	1	169096584	169096584	+	RNA	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:169096584T>C	uc001gfs.1	+	4		c.626T>C			uc010plp.1_5'Flank			P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					AACTTATGGCTACAAAGAGGG	0.388													8	22					0	0	0.069234	0	0
GOLT1A	127845	broad.mit.edu	37	1	204183026	204183026	+	Silent	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:204183026G>T	uc001has.1	-	1	195	c.9C>A	c.(7-9)TCC>TCA	p.S3S	GOLT1A_uc001hat.1_Silent_p.S3S	NM_198447	NP_940849	Q6ZVE7	GOT1A_HUMAN	golgi transport 1 homolog A	3	Cytoplasmic (Potential).				protein transport|vesicle-mediated transport	Golgi membrane|integral to membrane					0	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.244)			ATTCGGTGATGGAGATCATGC	0.642													16	42					4.63292e-17	5.2346e-17	0.204396	1	0
FAM188A	80013	broad.mit.edu	37	10	15879212	15879212	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr10:15879212T>A	uc001iod.1	-	6	788	c.567A>T	c.(565-567)TTA>TTT	p.L189F	FAM188A_uc001ioe.1_Missense_Mutation_p.L16F|FAM188A_uc001iof.1_Missense_Mutation_p.L189F	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	189					apoptosis	nucleus	calcium ion binding			ovary(1)	1						CCTTTGTCAGTAATACAGAAT	0.353													6	12					0	0	0.278610	0	0
TNKS2	80351	broad.mit.edu	37	10	93593686	93593686	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr10:93593686T>C	uc001khp.2	+	12	1649	c.1352T>C	c.(1351-1353)CTA>CCA	p.L451P		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	451	ANK 9.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				ACCTGCCGCCTACTCCTGAGC	0.413													15	27					0	0	0.119110	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075425	106075425	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr10:106075425C>T	uc001kye.2	-	2	458	c.385G>A	c.(385-387)GCC>ACC	p.A129T	ITPRIP_uc001kyf.2_Missense_Mutation_p.A129T|ITPRIP_uc001kyg.2_Missense_Mutation_p.A129T	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	129						plasma membrane					0						TGCAAGGGGGCGCCCCCCAGC	0.692													71	154					0	0	0.323286	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955994	18955994	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr11:18955994A>T	uc001mpg.2	-	1	556	c.338T>A	c.(337-339)CTG>CAG	p.L113Q		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	113	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CACGGCACTCAGAAAGCTCAG	0.542													10	255					0	0	0.335167	0	0
OR4C11	219429	broad.mit.edu	37	11	55371692	55371692	+	Missense_Mutation	SNP	A	T	T	rs151111921	byFrequency	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr11:55371692A>T	uc010rii.1	-	1	158	c.158T>A	c.(157-159)CTA>CAA	p.L53Q		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGGCTTCCTAGTGTCCGGCT	0.398													7	14					0	0	0.278610	0	0
ABCG4	64137	broad.mit.edu	37	11	119027678	119027678	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr11:119027678G>T	uc001pvs.2	+	9	1358	c.1022G>T	c.(1021-1023)AGC>ATC	p.S341I	ABCG4_uc009zar.2_Missense_Mutation_p.S341I	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	341	Cytoplasmic (Potential).				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		AAGAAGAGCAGCCCTGAGAAG	0.607													105	266					1.92787e-56	2.23633e-56	0.323286	1	0
WDR66	144406	broad.mit.edu	37	12	122413567	122413567	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr12:122413567T>C	uc009zxk.2	+	19	3124	c.2982T>C	c.(2980-2982)ATT>ATC	p.I994I		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	994							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		TGAGAGCAATTGGCTTTTACC	0.438													46	122					0	0	0.323286	0	0
JAG2	3714	broad.mit.edu	37	14	105622266	105622266	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr14:105622266T>C	uc001yqg.2	-	4	940	c.536A>G	c.(535-537)AAG>AGG	p.K179R	JAG2_uc001yqh.2_Missense_Mutation_p.K179R	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	179	Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GTGCAGGCTCTTCCAGCGGTC	0.632													19	38					0	0	0.234183	0	0
TMC3	342125	broad.mit.edu	37	15	81648105	81648105	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr15:81648105G>A	uc002bgo.1	-	9	896	c.896C>T	c.(895-897)GCT>GTT	p.A299V	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.A299V	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	299	Extracellular (Potential).					integral to membrane				ovary(1)|liver(1)	2						TTCCAATATAGCTTCCTTTAA	0.284													15	44					0	0	0.132662	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100657190	100657190	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr15:100657190C>T	uc002bvv.1	-	13	1829	c.1750G>A	c.(1750-1752)GGT>AGT	p.G584S	ADAMTS17_uc002bvx.1_Missense_Mutation_p.G341S	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	584	TSP type-1 1.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		ACACTGGCACCCGGGCAGTGT	0.632													24	56					0	0	0.279207	0	0
IFT140	9742	broad.mit.edu	37	16	1608090	1608090	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr16:1608090G>T	uc002cmb.2	-	19	2607	c.2245C>A	c.(2245-2247)CAC>AAC	p.H749N	IFT140_uc002clz.2_Missense_Mutation_p.H400N	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	749										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGAGGGATGTGGTGGCACCCA	0.552													270	464					1.22476e-156	1.45964e-156	0.323286	1	0
HCFC1R1	54985	broad.mit.edu	37	16	3073346	3073346	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr16:3073346G>C	uc002csx.1	-	4	302	c.169C>G	c.(169-171)CAG>GAG	p.Q57E	HCFC1R1_uc002csy.1_Missense_Mutation_p.Q57E|HCFC1R1_uc002csz.1_Missense_Mutation_p.Q38E|THOC6_uc002ctb.2_5'Flank|THOC6_uc002ctd.2_5'Flank|THOC6_uc002ctc.2_5'Flank|THOC6_uc002cta.2_5'Flank	NM_001002018	NP_001002018	Q9NWW0	HPIP_HUMAN	host cell factor C1 regulator 1 (XPO1 dependant)	57						cytoplasm|nucleus					0						GACAGAAACTGCTTGCGCAGA	0.592													8	402					0	0	0.307466	0	0
RBBP6	5930	broad.mit.edu	37	16	24551952	24551952	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr16:24551952C>G	uc002dmh.2	+	1	1045	c.5C>G	c.(4-6)TCC>TGC	p.S2C	RBBP6_uc010vcb.1_Intron|RBBP6_uc002dmg.2_Missense_Mutation_p.S2C|RBBP6_uc002dmi.2_Missense_Mutation_p.S2C|RBBP6_uc010bxr.2_Missense_Mutation_p.S2C	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	2					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GGCACCATGTCCTGTGTGCAT	0.408													4	230					0	0	0.184627	0	0
MNT	4335	broad.mit.edu	37	17	2298597	2298597	+	Silent	SNP	T	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:2298597T>G	uc002fur.2	-	2	477	c.225A>C	c.(223-225)GCA>GCC	p.A75A		NM_020310	NP_064706	Q99583	MNT_HUMAN	MAX binding protein	75					multicellular organismal development|negative regulation of cell proliferation|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			skin(1)	1				Colorectal(2;1.37e-05)|READ - Rectum adenocarcinoma(2;8.68e-05)		gtggtgggggtgccggcgggg	0.204													6	18					0	0	0.279207	0	0
KIAA0664	23277	broad.mit.edu	37	17	2604434	2604434	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:2604434C>T	uc002fuy.1	-	7	997	c.911G>A	c.(910-912)AGG>AAG	p.R304K	KIAA0664_uc002fux.1_Missense_Mutation_p.R236K	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	304							binding			breast(2)	2						AAGGCACTACCTTTTCTTCTG	0.602													52	73					0	0	0.323286	0	0
ASGR1	432	broad.mit.edu	37	17	7081872	7081872	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:7081872T>G	uc002ges.3	-	2	421	c.11A>C	c.(10-12)GAG>GCG	p.E4A	ASGR1_uc010clx.1_5'Flank	NM_001671	NP_001662	P07306	ASGR1_HUMAN	asialoglycoprotein receptor 1	4	Cytoplasmic (Probable).				receptor-mediated endocytosis	integral to plasma membrane	asialoglycoprotein receptor activity|metal ion binding|sugar binding			breast(1)|central_nervous_system(1)	2						GTCTTGATACTCCTTGGTCAT	0.378													93	102					0	0	0.323286	0	0
PFAS	5198	broad.mit.edu	37	17	8170542	8170542	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:8170542C>T	uc002gkr.2	+	24	3305	c.3164C>T	c.(3163-3165)CCC>CTC	p.P1055L	PFAS_uc010vuv.1_Missense_Mutation_p.P631L|PFAS_uc002gks.2_Missense_Mutation_p.P134L	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	1055					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCCTCCGTGCCCCGTGAGCCT	0.677													21	47					0	0	0.264190	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904114	21904114	+	RNA	SNP	A	G	G	rs75848292		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:21904114A>G	uc002gza.2	+	1		c.53A>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						tccggctgccaggagtcgcaa	0													4	84					0	0	0.217242	0	0
LOC284100	284100	broad.mit.edu	37	17	36214775	36214775	+	RNA	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:36214775G>T	uc002hom.1	-	2		c.184C>A			LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						CTTGCCAGTGGTAGCTGCTGG	0.353													4	24					2.56e-06	2.65143e-06	0.150653	1	0
MAP3K14	9020	broad.mit.edu	37	17	43364549	43364549	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:43364549C>T	uc002iiw.1	-	4	617	c.508G>A	c.(508-510)GAG>AAG	p.E170K	MAP3K14_uc010daj.1_5'Flank|MAP3K14_uc002iiv.1_5'UTR	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	170					cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						CTCTCCTGCTCAGGGGTCCTG	0.617													27	102					0	0	0.353513	0	0
ACE	1636	broad.mit.edu	37	17	61562641	61562641	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:61562641T>C	uc002jau.1	+	13	1988	c.1966T>C	c.(1966-1968)TAT>CAT	p.Y656H	ACE_uc010ddu.1_Missense_Mutation_p.Y473H|ACE_uc002jav.1_Missense_Mutation_p.Y82H|ACE_uc010ddv.1_5'UTR|ACE_uc010wpj.1_Missense_Mutation_p.Y82H|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_5'UTR	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	656	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TGTGGAGGAATATGACCGGAC	0.552													80	92					0	0	0.323286	0	0
VPS4B	9525	broad.mit.edu	37	18	61058289	61058289	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr18:61058289T>C	uc002lix.2	-	11	1514	c.1254A>G	c.(1252-1254)CTA>CTG	p.L418L		NM_004869	NP_004860	O75351	VPS4B_HUMAN	vacuolar protein sorting factor 4B	418					cell cycle|cell division|cellular membrane organization|endosome to lysosome transport via multivesicular body sorting pathway|intracellular cholesterol transport|protein transport|response to lipid	cytosol|early endosome|late endosome membrane|lysosome|nucleus|vacuolar membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding			ovary(1)	1						TTGTGTTAGATAGTGACCGCA	0.348													21	153					0	0	0.234183	0	0
DAZAP1	26528	broad.mit.edu	37	19	1428875	1428875	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:1428875A>G	uc002lsn.2	+	8	770	c.581A>G	c.(580-582)AAG>AGG	p.K194R	DAZAP1_uc002lsm.2_Missense_Mutation_p.K194R|DAZAP1_uc002lso.2_Missense_Mutation_p.K193R|DAZAP1_uc002lsl.1_Missense_Mutation_p.K194R	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	194					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGGACAGCAAGAGCCAAGCG	0.657													35	87					0	0	0.268233	0	0
EEF2	1938	broad.mit.edu	37	19	3979985	3979985	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:3979985C>T	uc002lze.2	-	10	1509	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	476						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGAACTGGTCCACGCCCACG	0.592													31	105					0	0	0.144211	0	0
EIF3G	8666	broad.mit.edu	37	19	10230530	10230530	+	Silent	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:10230530A>G	uc002mnd.2	-	1	70	c.6T>C	c.(4-6)CCT>CCC	p.P2P	EIF3G_uc010dxa.2_Silent_p.P2P|EIF3G_uc010xlb.1_Silent_p.P2P	NM_003755	NP_003746	O75821	EIF3G_HUMAN	eukaryotic translation initiation factor 3,	2						cytosol|eukaryotic translation initiation factor 3 complex|nucleus|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0			OV - Ovarian serous cystadenocarcinoma(20;3.53e-09)|Epithelial(33;4.91e-06)|all cancers(31;1.1e-05)			AGTCTCCAGTAGGCATCGCAA	0.642											OREG0025231	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	109					0	0	0.323286	0	0
ZNF627	199692	broad.mit.edu	37	19	11728624	11728624	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:11728624G>T	uc002msk.2	+	4	1514	c.1306G>T	c.(1306-1308)GTA>TTA	p.V436L	ZNF627_uc010dyf.2_Missense_Mutation_p.V326L	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	436	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TTACTTTCGAGTACATGAAAA	0.423													17	46					3.32936e-07	3.53237e-07	0.175082	1	0
NXNL1	115861	broad.mit.edu	37	19	17571478	17571478	+	Silent	SNP	T	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:17571478T>G	uc002ngs.2	-	1	248	c.201A>C	c.(199-201)GTA>GTC	p.V67V		NM_138454	NP_612463	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	67	Thioredoxin.				cell redox homeostasis	nuclear outer membrane					0						CCGCCCGCAGTACATAGAACT	0.582													12	279					0	0	0.093190	0	0
BCKDHA	593	broad.mit.edu	37	19	41928188	41928188	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:41928188C>G	uc002oqq.2	+	6	795	c.766C>G	c.(766-768)CTT>GTT	p.L256V	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Missense_Mutation_p.L290V|BCKDHA_uc002oqp.1_Missense_Mutation_p.L148V|BCKDHA_uc002oqr.2_Missense_Mutation_p.L256V|BCKDHA_uc010xvz.1_Missense_Mutation_p.L234V	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	256					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						CGCTGCCACACTTGAGTGCCC	0.612													55	147					0	0	0.323286	0	0
SLC1A5	6510	broad.mit.edu	37	19	47280575	47280575	+	Silent	SNP	G	T	T	rs11541232		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:47280575G>T	uc002pfs.2	-	6	1766	c.1146C>A	c.(1144-1146)GGC>GGA	p.G382G	SLC1A5_uc010xyh.1_Silent_p.G180G|SLC1A5_uc002pfq.2_Silent_p.G206G|SLC1A5_uc002pfr.2_Silent_p.G154G	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	382	Helical; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	TGACGGTGGCGCCGATGGGCA	0.587													9	111					1.76689e-08	1.89777e-08	0.335167	1	0
VRK3	51231	broad.mit.edu	37	19	50500776	50500776	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:50500776C>T	uc002prg.2	-	7	762	c.664G>A	c.(664-666)GCC>ACC	p.A222T	VRK3_uc002prh.1_Missense_Mutation_p.A222T|VRK3_uc002pri.1_Missense_Mutation_p.A172T|VRK3_uc010ens.2_Missense_Mutation_p.A222T|VRK3_uc010ybl.1_Missense_Mutation_p.A172T|VRK3_uc010ybm.1_Intron|VRK3_uc002prj.1_Missense_Mutation_p.A172T|VRK3_uc002prk.1_Missense_Mutation_p.A222T|VRK3_uc010ent.1_5'UTR|VRK3_uc002prl.2_Missense_Mutation_p.A222T|VRK3_uc010ybn.1_Intron	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	222	Protein kinase.					nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		AGAGGCTTGGCGGCCCGCTGG	0.592													4	57					0	0	0.150653	0	0
GRHL1	29841	broad.mit.edu	37	2	10101557	10101557	+	Missense_Mutation	SNP	G	A	A	rs140278187		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:10101557G>A	uc002raa.2	+	4	832	c.661G>A	c.(661-663)GTT>ATT	p.V221I	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Silent_p.A57A|GRHL1_uc010yjb.1_Missense_Mutation_p.V70I	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	221					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		CAAGGAAGGCGTTCAGGAGGT	0.463													45	96					0	0	0.290176	0	0
LRRTM1	347730	broad.mit.edu	37	2	80529414	80529414	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:80529414T>G	uc002sok.1	-	2	1801	c.1531A>C	c.(1531-1533)ACC>CCC	p.T511P	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	511	Cytoplasmic (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						TGGTGGCAGGTACACGAGCCA	0.587										HNSCC(69;0.2)			12	39					0	0	0.312237	0	0
WASH2P	375260	broad.mit.edu	37	2	114356239	114356239	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:114356239T>C	uc002tkh.2	+	6	775	c.717T>C	c.(715-717)CGT>CGC	p.R239R	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCTTTGCCCGTGTGTCAGACT	0.642													3	17					0	0	0.150653	0	0
TMEM37	140738	broad.mit.edu	37	2	120194829	120194829	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:120194829T>C	uc002tly.2	+	2	420	c.386T>C	c.(385-387)ATC>ACC	p.I129T		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	129						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						ATGGGTTCCATCCTCCTCCTG	0.567													204	516					0	0	0.323286	0	0
PTPN18	26469	broad.mit.edu	37	2	131130764	131130764	+	Silent	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:131130764C>T	uc002trc.2	+	15	1451	c.1350C>T	c.(1348-1350)CCC>CCT	p.P450P	PTPN18_uc002trd.2_Silent_p.P429P|PTPN18_uc002trb.2_Silent_p.P343P|PTPN18_uc002tre.2_Silent_p.P101P	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	450						cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					CGAAGGGTCCCCGGGACCCGC	0.617													4	53					0	0	0.150653	0	0
KCNH7	90134	broad.mit.edu	37	2	163241347	163241347	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:163241347A>G	uc002uch.1	-	13	3025	c.2813T>C	c.(2812-2814)ATC>ACC	p.I938T		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	938	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AATGGAGGAGATGAAAGATGA	0.408													15	25					0	0	0.175082	0	0
SLC5A3	6526	broad.mit.edu	37	21	35467607	35467607	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr21:35467607G>A	uc002yto.2	+	2	622	c.110G>A	c.(109-111)AGT>AAT	p.S37N	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	37	Extracellular (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						AGCACCGTGAGTGGATACTTC	0.488													14	42					0	0	0.146539	0	0
SUSD2	56241	broad.mit.edu	37	22	24581140	24581140	+	Silent	SNP	C	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr22:24581140C>A	uc002zzn.1	+	6	905	c.861C>A	c.(859-861)GCC>GCA	p.A287A		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	287	AMOP.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCTGTGGCCTGGGCACGAA	0.662													28	85					1.75199e-13	1.9294e-13	0.353513	1	0
TTLL1	25809	broad.mit.edu	37	22	43442517	43442517	+	Silent	SNP	C	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr22:43442517C>G	uc003bdi.2	-	10	1282	c.1041G>C	c.(1039-1041)CTG>CTC	p.L347L	TTLL1_uc010gzh.2_Silent_p.L318L|TTLL1_uc003bdj.2_Silent_p.L233L|TTLL1_uc003bdh.2_Silent_p.L309L	NM_012263	NP_036395	O95922	TTLL1_HUMAN	tubulin tyrosine ligase-like family, member 1	347	TTL.				protein polyglutamylation	cytoplasm|microtubule	ATP binding|tubulin-glutamic acid ligase activity|tubulin-tyrosine ligase activity			skin(1)	1		Ovarian(80;0.0694)		BRCA - Breast invasive adenocarcinoma(115;0.00461)		TGTCATTAATCAGGTTGTACT	0.512													13	420					0	0	0.105934	0	0
ITGB5	3693	broad.mit.edu	37	3	124515613	124515614	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:124515613_124515614CC>AT	uc003eho.2	-	10	1611_1612	c.1314_1315GG>AT	c.(1312-1317)ACGGAG>ACATAG	p.E439*	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	439	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		AACACATGCTCCGTGTGTCTGC	0.609													24	100					0	0	0.115264	0	0
MUC4	4585	broad.mit.edu	37	3	195515463	195515463	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:195515463G>A	uc011bto.1	-	2	3448	c.2988C>T	c.(2986-2988)ACC>ACT	p.T996T	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		AGGAAGCATCGGTGACATGAA	0.582													3	31					0	0	0.115264	0	0
PCYT1A	5130	broad.mit.edu	37	3	195974373	195974373	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:195974373G>A	uc003fwg.2	-	6	524	c.351C>T	c.(349-351)CTC>CTT	p.L117L	PCYT1A_uc003fwh.2_Silent_p.L117L	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	117	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	AGTTGTGTGTGAGCTCATCAC	0.527													73	246					0	0	0.323286	0	0
LRRC33	375387	broad.mit.edu	37	3	196387840	196387840	+	Silent	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:196387840C>T	uc003fwv.2	+	3	1430	c.1326C>T	c.(1324-1326)CCC>CCT	p.P442P		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	442	Extracellular (Potential).|LRR 15.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CACTTTGTCCCCTGCCAGCTG	0.592													323	388					0	0	0.323286	0	0
CLOCK	9575	broad.mit.edu	37	4	56301654	56301654	+	Silent	SNP	A	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:56301654A>T	uc003haz.1	-	24	3395	c.2469T>A	c.(2467-2469)TCT>TCA	p.S823S	CLOCK_uc003hba.1_Silent_p.S823S|CLOCK_uc010igu.1_RNA	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	823	Poly-Gln.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			GCTGTTGCTGAGACTGATGTT	0.527													10	37					0	0	0.093190	0	0
UGT2B7	7364	broad.mit.edu	37	4	69978199	69978199	+	Silent	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:69978199A>G	uc003heg.3	+	6	1381	c.1335A>G	c.(1333-1335)TTA>TTG	p.L445L	UGT2B7_uc010ihq.2_3'UTR	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	445					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTATGAAATTATCAAGAATTC	0.284													12	26					0	0	0.080935	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86921691	86921691	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:86921691A>G	uc003hpk.2	+	10	2512	c.2063A>G	c.(2062-2064)GAT>GGT	p.D688G	ARHGAP24_uc003hpl.2_Missense_Mutation_p.D593G|ARHGAP24_uc010ikf.2_Missense_Mutation_p.D603G|ARHGAP24_uc003hpm.2_Missense_Mutation_p.D595G	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	688	Potential.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		GATGAACTGGATCAGGAGAGG	0.448													12	20					0	0	0.080935	0	0
BMPR1B	658	broad.mit.edu	37	4	96025660	96025660	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:96025660G>A	uc003htm.3	+	4	359	c.85G>A	c.(85-87)GTC>ATC	p.V29I	BMPR1B_uc010ilb.2_Missense_Mutation_p.V29I|BMPR1B_uc003htn.3_Missense_Mutation_p.V29I	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	29	Extracellular (Potential).				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		CCGTCCAAAGGTCTTGCGTTG	0.423													4	15					0	0	0.217242	0	0
TBCK	93627	broad.mit.edu	37	4	107092373	107092373	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:107092373G>A	uc010ilv.2	-	23	2479	c.2114C>T	c.(2113-2115)CCT>CTT	p.P705L	TBCK_uc003hyb.2_Missense_Mutation_p.P448L|TBCK_uc003hye.2_Missense_Mutation_p.P666L|TBCK_uc003hyc.2_Missense_Mutation_p.P642L|TBCK_uc003hyd.2_Missense_Mutation_p.P533L|TBCK_uc003hyf.2_Missense_Mutation_p.P705L	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	705						intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						AGCACTTTTAGGAGTCCAACA	0.398													3	24					0	0	0.115264	0	0
SEMA5A	9037	broad.mit.edu	37	5	9226981	9226981	+	Silent	SNP	C	T	T	rs141767878		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr5:9226981C>T	uc003jek.2	-	7	1144	c.432G>A	c.(430-432)TCG>TCA	p.S144S		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	144	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GAAGCCATACCGAGCGGTTGG	0.438													6	130					0	0	0.278610	0	0
GABRG2	2566	broad.mit.edu	37	5	161576298	161576298	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr5:161576298A>T	uc003lyz.3	+	8	1465	c.1107A>T	c.(1105-1107)AAA>AAT	p.K369N	GABRG2_uc010jjc.2_Missense_Mutation_p.K409N|GABRG2_uc003lyy.3_Missense_Mutation_p.K369N|GABRG2_uc011dej.1_Missense_Mutation_p.K274N	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	369	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GCAAGGACAAAGATAAAAAGA	0.373													8	30					0	0	0.278610	0	0
DST	667	broad.mit.edu	37	6	56499603	56499603	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr6:56499603A>C	uc003pdf.2	-	24	3264	c.3236T>G	c.(3235-3237)ATT>AGT	p.I1079S	DST_uc003pcz.3_Missense_Mutation_p.I901S|DST_uc011dxj.1_Missense_Mutation_p.I930S|DST_uc011dxk.1_Missense_Mutation_p.I941S|DST_uc003pcy.3_Missense_Mutation_p.I575S|DST_uc003pdb.2_Missense_Mutation_p.I575S|DST_uc003pdc.3_Missense_Mutation_p.I575S|DST_uc003pdd.3_Missense_Mutation_p.I575S	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	901	SH3.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AAGTACCTCAATTTGTCTGTA	0.358													47	112					0	0	0.312237	0	0
FAM135A	57579	broad.mit.edu	37	6	71234676	71234676	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr6:71234676T>A	uc003pfj.2	+	13	2022	c.1889T>A	c.(1888-1890)ATG>AAG	p.M630K	FAM135A_uc003pfi.2_Missense_Mutation_p.M434K|FAM135A_uc003pfh.2_Missense_Mutation_p.M417K|FAM135A_uc003pfl.2_Missense_Mutation_p.M297K|FAM135A_uc003pfn.2_Missense_Mutation_p.M60K|FAM135A_uc003pfo.1_Missense_Mutation_p.M1K	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	630										central_nervous_system(1)	1						ATTACACAAATGGAACACAAT	0.393													11	10					0	0	0.105934	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95665021	95665021	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:95665021G>A	uc003uoc.3	+	13	1649	c.1372G>A	c.(1372-1374)GGC>AGC	p.G458S	DYNC1I1_uc003uod.3_Missense_Mutation_p.G441S|DYNC1I1_uc003uob.2_Missense_Mutation_p.G421S|DYNC1I1_uc003uoe.3_Missense_Mutation_p.G438S|DYNC1I1_uc010lfl.2_Missense_Mutation_p.G447S	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	458	WD 4.				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			CTTCGTGGTTGGCAGTGAGGA	0.463													3	69					0	0	0.115264	0	0
AP4M1	9179	broad.mit.edu	37	7	99700326	99700326	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:99700326T>C	uc003utb.3	+	3	384	c.176T>C	c.(175-177)ATC>ACC	p.I59T	MCM7_uc003usv.1_5'Flank|MCM7_uc003usw.1_5'Flank|MCM7_uc003usx.1_5'Flank|AP4M1_uc011kjg.1_Missense_Mutation_p.I59T|AP4M1_uc010lgl.1_Missense_Mutation_p.I59T|AP4M1_uc003utc.3_Missense_Mutation_p.I66T|AP4M1_uc010lgm.2_5'UTR|AP4M1_uc003utd.2_Missense_Mutation_p.I59T|AP4M1_uc011kjh.1_Missense_Mutation_p.I11T|AP4M1_uc003ute.3_5'UTR|AP4M1_uc003utf.3_5'UTR	NM_004722	NP_004713	O00189	AP4M1_HUMAN	adaptor-related protein complex 4, mu 1 subunit	59					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|coated pit|Golgi trans cisterna	transporter activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TTCATTCACATCAGACACAGC	0.403													59	246					0	0	0.323286	0	0
LAMB1	3912	broad.mit.edu	37	7	107572755	107572755	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:107572755T>C	uc003vew.2	-	28	4591	c.4256A>G	c.(4255-4257)GAC>GGC	p.D1419G	LAMB1_uc003vev.2_Missense_Mutation_p.D1443G|LAMB1_uc003veu.2_5'Flank	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1419	Domain alpha.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCTCCTTCGTCAGTTCTGCA	0.572													4	186					0	0	0.184627	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117364734	117364734	+	Silent	SNP	T	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:117364734T>A	uc003vjf.2	-	19	4406	c.4314A>T	c.(4312-4314)ATA>ATT	p.I1438I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1438										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		AACTGGAAACTATGGATAAAG	0.438													15	50					0	0	0.146539	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117396642	117396642	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:117396642G>A	uc003vjf.2	-	12	3407	c.3315C>T	c.(3313-3315)ATC>ATT	p.I1105I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1105										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		TCTGGAGAGGGATCATGGAGG	0.498													9	161					0	0	0.307466	0	0
ARF5	381	broad.mit.edu	37	7	127229193	127229193	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:127229193A>G	uc003vmb.1	+	2	160	c.124A>G	c.(124-126)ATT>GTT	p.I42V	ARF5_uc010llb.1_Missense_Mutation_p.I42V|FSCN3_uc003vmc.1_5'Flank	NM_001662	NP_001653	P84085	ARF5_HUMAN	ADP-ribosylation factor 5	42					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	Golgi apparatus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1						GTTGGGGGAGATTGTCACCAC	0.632											OREG0018287	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	83	116					0	0	0.323286	0	0
KRBA1	84626	broad.mit.edu	37	7	149422542	149422542	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:149422542G>C	uc003wfz.2	+	10	1662	c.1263G>C	c.(1261-1263)CAG>CAC	p.Q421H	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Missense_Mutation_p.Q89H	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	421										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTAGGTCTCAGAAGCCTGAAC	0.597													3	82					0	0	0.115264	0	0
DOCK5	80005	broad.mit.edu	37	8	25190182	25190182	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr8:25190182T>C	uc003xeg.2	+	20	2202	c.2065T>C	c.(2065-2067)TAT>CAT	p.Y689H	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.Y403H|DOCK5_uc003xei.2_Missense_Mutation_p.Y259H|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	689						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		CAGTGAAACCTATGACTTCCT	0.259													2	8					0	0	0.115264	0	0
ABRA	137735	broad.mit.edu	37	8	107782408	107782408	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr8:107782408C>A	uc003ymm.3	-	1	65	c.11G>T	c.(10-12)GGC>GTC	p.G4V		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	4					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			TTCCTTTTCGCCCGGAGCCAT	0.597													50	131					2.23044e-30	2.55326e-30	0.323286	1	0
MRPL13	28998	broad.mit.edu	37	8	121455496	121455496	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr8:121455496G>A	uc003ypa.2	-	2	393	c.80C>T	c.(79-81)CCA>CTA	p.P27L	MTBP_uc003ypc.1_5'Flank|MRPL13_uc010mdf.2_RNA|MTBP_uc003ypb.1_5'Flank|MTBP_uc011lie.1_5'Flank	NM_014078	NP_054797	Q9BYD1	RM13_HUMAN	mitochondrial ribosomal protein L13	27					translation	mitochondrial large ribosomal subunit	protein binding|structural constituent of ribosome			central_nervous_system(1)	1	Lung NSC(37;1.69e-07)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TTTGCCAGGTGGCTGCATTTT	0.373													8	25					0	0	0.335167	0	0
CYHR1	50626	broad.mit.edu	37	8	145690192	145690192	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr8:145690192C>G	uc003zcv.2	-	1	227	c.93G>C	c.(91-93)GAG>GAC	p.E31D	CYHR1_uc003zcw.2_Missense_Mutation_p.E31D|CYHR1_uc003zcx.2_Missense_Mutation_p.E31D|CYHR1_uc003zcy.2_Missense_Mutation_p.E31D|KIFC2_uc003zcz.2_5'Flank	NM_138496	NP_612505	Q6ZMK1	CYHR1_HUMAN	cysteine/histidine-rich 1 isoform 1	31						perinuclear region of cytoplasm	zinc ion binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GTGTACTCACCTCGGCTGTGC	0.627													17	60					0	0	0.279207	0	0
TNFSF8	944	broad.mit.edu	37	9	117666220	117666220	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr9:117666220A>C	uc004bji.1	-	4	883	c.696T>G	c.(694-696)AAT>AAG	p.N232K		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	232	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						TTCAGTCTGAATTACTGTATA	0.408													20	31					0	0	0.249174	0	0
AJAP1	55966	broad.mit.edu	37	1	4832585	4832585	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:4832585G>A	uc001alm.1	+	4	1544	c.1163G>A	c.(1162-1164)CGA>CAA	p.R388Q	AJAP1_uc001aln.2_Missense_Mutation_p.R388Q	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	388	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		AATGGAAACCGGTAAGCTCGG	0.592000													3	72					0	0	0.009096	0	0
LRIG2	9860	broad.mit.edu	37	1	113616165	113616165	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:113616165C>A	uc001edf.1	+	1	335	c.137C>A	c.(136-138)CCC>CAC	p.P46H	LRIG2_uc009wgn.1_5'UTR|uc001ede.1_5'Flank	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	46	LRRNT.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TGCCCCGCGCCCTGCTCCTGC	0.652000											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	204					1.98717e-13	2.28901e-13	0.139131	1	0
ATP1A1	476	broad.mit.edu	37	1	116941400	116941400	+	Missense_Mutation	SNP	G	C	C	rs11540954		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:116941400G>C	uc001ege.2	+	16	2621	c.2282G>C	c.(2281-2283)GGA>GCA	p.G761A	ATP1A1_uc010owv.1_Missense_Mutation_p.G730A|ATP1A1_uc010oww.1_Missense_Mutation_p.G761A|ATP1A1_uc010owx.1_Missense_Mutation_p.G730A|C1orf203_uc009whb.2_Intron|ATP1A1_uc001egh.2_5'Flank	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	761	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	ATTGTGACTGGAGTAGAGGAA	0.438000													50	108					0	0	0.139131	0	0
ATP1B1	481	broad.mit.edu	37	1	169096584	169096584	+	RNA	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:169096584T>C	uc001gfs.1	+	4		c.626T>C			uc010plp.1_5'Flank			P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					AACTTATGGCTACAAAGAGGG	0.388000													49	95					0	0	0.139131	0	0
GOLT1A	127845	broad.mit.edu	37	1	204183026	204183026	+	Silent	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:204183026G>T	uc001has.1	-	1	195	c.9C>A	c.(7-9)TCC>TCA	p.S3S	GOLT1A_uc001hat.1_Silent_p.S3S	NM_198447	NP_940849	Q6ZVE7	GOT1A_HUMAN	golgi transport 1 homolog A	3	Cytoplasmic (Potential).				protein transport|vesicle-mediated transport	Golgi membrane|integral to membrane					0	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.244)			ATTCGGTGATGGAGATCATGC	0.642000													7	31					3.09899e-07	3.39768e-07	0.047766	1	0
FAM188A	80013	broad.mit.edu	37	10	15879212	15879212	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr10:15879212T>A	uc001iod.1	-	6	788	c.567A>T	c.(565-567)TTA>TTT	p.L189F	FAM188A_uc001ioe.1_Missense_Mutation_p.L16F|FAM188A_uc001iof.1_Missense_Mutation_p.L189F	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	189					apoptosis	nucleus	calcium ion binding			ovary(1)	1						CCTTTGTCAGTAATACAGAAT	0.353000													76	173					0	0	0.139131	0	0
TNKS2	80351	broad.mit.edu	37	10	93593686	93593686	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr10:93593686T>C	uc001khp.2	+	12	1649	c.1352T>C	c.(1351-1353)CTA>CCA	p.L451P		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	451	ANK 9.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				ACCTGCCGCCTACTCCTGAGC	0.413000													73	150					0	0	0.139131	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075425	106075425	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr10:106075425C>T	uc001kye.2	-	2	458	c.385G>A	c.(385-387)GCC>ACC	p.A129T	ITPRIP_uc001kyf.2_Missense_Mutation_p.A129T|ITPRIP_uc001kyg.2_Missense_Mutation_p.A129T	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	129						plasma membrane					0						TGCAAGGGGGCGCCCCCCAGC	0.692000													65	81					0	0	0.139131	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955994	18955994	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr11:18955994A>T	uc001mpg.2	-	1	556	c.338T>A	c.(337-339)CTG>CAG	p.L113Q		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	113	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CACGGCACTCAGAAAGCTCAG	0.542000													5	124					0	0	0.021553	0	0
OR4C11	219429	broad.mit.edu	37	11	55371692	55371692	+	Missense_Mutation	SNP	A	T	T	rs151111921	byFrequency	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr11:55371692A>T	uc010rii.1	-	1	158	c.158T>A	c.(157-159)CTA>CAA	p.L53Q		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGGCTTCCTAGTGTCCGGCT	0.398000													75	150					0	0	0.139131	0	0
ABCG4	64137	broad.mit.edu	37	11	119027678	119027678	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr11:119027678G>T	uc001pvs.2	+	9	1358	c.1022G>T	c.(1021-1023)AGC>ATC	p.S341I	ABCG4_uc009zar.2_Missense_Mutation_p.S341I	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	341	Cytoplasmic (Potential).				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		AAGAAGAGCAGCCCTGAGAAG	0.607000													62	125					7.59065e-32	8.97076e-32	0.139131	1	0
TXNRD1	7296	broad.mit.edu	37	12	104705164	104705164	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr12:104705164G>A	uc010swk.1	+	5	533	c.511G>A	c.(511-513)GGC>AGC	p.G171S	TXNRD1_uc010swl.1_Missense_Mutation_p.G21S|TXNRD1_uc010swm.1_Missense_Mutation_p.G73S|TXNRD1_uc010swn.1_Missense_Mutation_p.G21S|TXNRD1_uc010swo.1_Missense_Mutation_p.G21S|TXNRD1_uc010swp.1_Intron|TXNRD1_uc010swq.1_Missense_Mutation_p.G71S|TXNRD1_uc001tku.2_RNA|TXNRD1_uc009zun.2_Missense_Mutation_p.G87S|TXNRD1_uc001tko.1_RNA|TXNRD1_uc001tkp.1_RNA|TXNRD1_uc001tkv.1_RNA	NM_001093771	NP_001087240	Q16881	TRXR1_HUMAN	thioredoxin reductase 1 isoform 3	171					cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity				0						CATTGGAGGTGGCTCAGGAGG	0.468000													3	59					0	0	0.014758	0	0
WDR66	144406	broad.mit.edu	37	12	122413567	122413567	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr12:122413567T>C	uc009zxk.2	+	19	3124	c.2982T>C	c.(2980-2982)ATT>ATC	p.I994I		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	994							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		TGAGAGCAATTGGCTTTTACC	0.438000													46	82					0	0	0.131918	0	0
FRMD6	122786	broad.mit.edu	37	14	52182105	52182105	+	Silent	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr14:52182105G>T	uc001wzd.2	+	10	1197	c.912G>T	c.(910-912)ACG>ACT	p.T304T	FRMD6_uc001wzb.2_Silent_p.T296T|FRMD6_uc001wzc.2_Silent_p.T296T|FRMD6_uc001wze.2_Silent_p.T227T|FRMD6_uc001wzf.2_5'UTR|FRMD6_uc001wzg.2_5'Flank	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	304	FERM.					cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					TATACTACACGGGGTGCCCCA	0.507000													13	126					1.61879e-10	1.84138e-10	0.093190	1	0
RDH12	145226	broad.mit.edu	37	14	68191259	68191259	+	Silent	SNP	C	T	T	rs140371232		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr14:68191259C>T	uc001xjz.3	+	4	462	c.138C>T	c.(136-138)GGC>GGT	p.G46G		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	46	NADP (By similarity).				photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	TGATCACTGGCGCCAACACGG	0.542000													5	153					0	0	0.021553	0	0
JAG2	3714	broad.mit.edu	37	14	105622266	105622266	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr14:105622266T>C	uc001yqg.2	-	4	940	c.536A>G	c.(535-537)AAG>AGG	p.K179R	JAG2_uc001yqh.2_Missense_Mutation_p.K179R	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	179	Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GTGCAGGCTCTTCCAGCGGTC	0.632000													10	33					0	0	0.093190	0	0
TMC3	342125	broad.mit.edu	37	15	81648105	81648105	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr15:81648105G>A	uc002bgo.1	-	9	896	c.896C>T	c.(895-897)GCT>GTT	p.A299V	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.A299V	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	299	Extracellular (Potential).					integral to membrane				ovary(1)|liver(1)	2						TTCCAATATAGCTTCCTTTAA	0.284000													30	64					0	0	0.045705	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100657190	100657190	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr15:100657190C>T	uc002bvv.1	-	13	1829	c.1750G>A	c.(1750-1752)GGT>AGT	p.G584S	ADAMTS17_uc002bvx.1_Missense_Mutation_p.G341S	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	584	TSP type-1 1.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		ACACTGGCACCCGGGCAGTGT	0.632000													16	24					0	0	0.146539	0	0
IFT140	9742	broad.mit.edu	37	16	1608090	1608090	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr16:1608090G>T	uc002cmb.2	-	19	2607	c.2245C>A	c.(2245-2247)CAC>AAC	p.H749N	IFT140_uc002clz.2_Missense_Mutation_p.H400N	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	749										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGAGGGATGTGGTGGCACCCA	0.552000													134	355					8.08879e-62	9.68526e-62	0.139131	1	0
HCFC1R1	54985	broad.mit.edu	37	16	3073346	3073346	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr16:3073346G>C	uc002csx.1	-	4	302	c.169C>G	c.(169-171)CAG>GAG	p.Q57E	HCFC1R1_uc002csy.1_Missense_Mutation_p.Q57E|HCFC1R1_uc002csz.1_Missense_Mutation_p.Q38E|THOC6_uc002ctb.2_5'Flank|THOC6_uc002ctd.2_5'Flank|THOC6_uc002ctc.2_5'Flank|THOC6_uc002cta.2_5'Flank	NM_001002018	NP_001002018	Q9NWW0	HPIP_HUMAN	host cell factor C1 regulator 1 (XPO1 dependant)	57						cytoplasm|nucleus					0						GACAGAAACTGCTTGCGCAGA	0.592000													7	231					0	0	0.047766	0	0
ZNF500	26048	broad.mit.edu	37	16	4810588	4810588	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr16:4810588A>C	uc002cxp.1	-	5	912	c.665T>G	c.(664-666)GTG>GGG	p.V222G	ZNF500_uc002cxo.1_Missense_Mutation_p.V14G|ZNF500_uc010uxt.1_Missense_Mutation_p.V222G	NM_021646	NP_067678	O60304	ZN500_HUMAN	zinc finger protein 500	222					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						GTTCACGGGCACCTGCCAGAA	0.637000													11	99					0	0	0.059317	0	0
RBBP6	5930	broad.mit.edu	37	16	24551952	24551952	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr16:24551952C>G	uc002dmh.2	+	1	1045	c.5C>G	c.(4-6)TCC>TGC	p.S2C	RBBP6_uc010vcb.1_Intron|RBBP6_uc002dmg.2_Missense_Mutation_p.S2C|RBBP6_uc002dmi.2_Missense_Mutation_p.S2C|RBBP6_uc010bxr.2_Missense_Mutation_p.S2C	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	2					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GGCACCATGTCCTGTGTGCAT	0.408000													6	191					0	0	0.021553	0	0
KIAA0664	23277	broad.mit.edu	37	17	2604434	2604434	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:2604434C>T	uc002fuy.1	-	7	997	c.911G>A	c.(910-912)AGG>AAG	p.R304K	KIAA0664_uc002fux.1_Missense_Mutation_p.R236K	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	304							binding			breast(2)	2						AAGGCACTACCTTTTCTTCTG	0.602000													33	29					0	0	0.059317	0	0
ANKFY1	51479	broad.mit.edu	37	17	4084580	4084580	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:4084580T>C	uc002fxq.1	-	16	2247	c.2209A>G	c.(2209-2211)AAC>GAC	p.N737D	ANKFY1_uc002fxn.2_Missense_Mutation_p.N779D|ANKFY1_uc002fxo.2_Missense_Mutation_p.N738D|ANKFY1_uc002fxp.2_Missense_Mutation_p.N736D|ANKFY1_uc010ckp.2_Missense_Mutation_p.N679D	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	737	ANK 12.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						GTGGGCTCGTTGTTTTCATCA	0.522000													6	185					0	0	0.029380	0	0
ASGR1	432	broad.mit.edu	37	17	7081872	7081872	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:7081872T>G	uc002ges.3	-	2	421	c.11A>C	c.(10-12)GAG>GCG	p.E4A	ASGR1_uc010clx.1_5'Flank	NM_001671	NP_001662	P07306	ASGR1_HUMAN	asialoglycoprotein receptor 1	4	Cytoplasmic (Probable).				receptor-mediated endocytosis	integral to plasma membrane	asialoglycoprotein receptor activity|metal ion binding|sugar binding			breast(1)|central_nervous_system(1)	2						GTCTTGATACTCCTTGGTCAT	0.378000													47	56					0	0	0.124865	0	0
PFAS	5198	broad.mit.edu	37	17	8170542	8170542	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:8170542C>T	uc002gkr.2	+	24	3305	c.3164C>T	c.(3163-3165)CCC>CTC	p.P1055L	PFAS_uc010vuv.1_Missense_Mutation_p.P631L|PFAS_uc002gks.2_Missense_Mutation_p.P134L	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	1055					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCCTCCGTGCCCCGTGAGCCT	0.677000													12	26					0	0	0.080935	0	0
MAP3K14	9020	broad.mit.edu	37	17	43364549	43364549	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:43364549C>T	uc002iiw.1	-	4	617	c.508G>A	c.(508-510)GAG>AAG	p.E170K	MAP3K14_uc010daj.1_5'Flank|MAP3K14_uc002iiv.1_5'UTR	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	170					cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						CTCTCCTGCTCAGGGGTCCTG	0.617000													19	60					0	0	0.043863	0	0
ACE	1636	broad.mit.edu	37	17	61562641	61562641	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:61562641T>C	uc002jau.1	+	13	1988	c.1966T>C	c.(1966-1968)TAT>CAT	p.Y656H	ACE_uc010ddu.1_Missense_Mutation_p.Y473H|ACE_uc002jav.1_Missense_Mutation_p.Y82H|ACE_uc010ddv.1_5'UTR|ACE_uc010wpj.1_Missense_Mutation_p.Y82H|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_5'UTR	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	656	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TGTGGAGGAATATGACCGGAC	0.552000													45	47					0	0	0.131918	0	0
VPS4B	9525	broad.mit.edu	37	18	61058289	61058289	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr18:61058289T>C	uc002lix.2	-	11	1514	c.1254A>G	c.(1252-1254)CTA>CTG	p.L418L		NM_004869	NP_004860	O75351	VPS4B_HUMAN	vacuolar protein sorting factor 4B	418					cell cycle|cell division|cellular membrane organization|endosome to lysosome transport via multivesicular body sorting pathway|intracellular cholesterol transport|protein transport|response to lipid	cytosol|early endosome|late endosome membrane|lysosome|nucleus|vacuolar membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding			ovary(1)	1						TTGTGTTAGATAGTGACCGCA	0.348000													16	103					0	0	0.146539	0	0
DAZAP1	26528	broad.mit.edu	37	19	1428875	1428875	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:1428875A>G	uc002lsn.2	+	8	770	c.581A>G	c.(580-582)AAG>AGG	p.K194R	DAZAP1_uc002lsm.2_Missense_Mutation_p.K194R|DAZAP1_uc002lso.2_Missense_Mutation_p.K193R|DAZAP1_uc002lsl.1_Missense_Mutation_p.K194R	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	194					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGGACAGCAAGAGCCAAGCG	0.657000													18	50					0	0	0.069288	0	0
EEF2	1938	broad.mit.edu	37	19	3979985	3979985	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:3979985C>T	uc002lze.2	-	10	1509	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	476						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGAACTGGTCCACGCCCACG	0.592000													17	47					0	0	0.055883	0	0
EIF3G	8666	broad.mit.edu	37	19	10230530	10230530	+	Silent	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:10230530A>G	uc002mnd.2	-	1	70	c.6T>C	c.(4-6)CCT>CCC	p.P2P	EIF3G_uc010dxa.2_Silent_p.P2P|EIF3G_uc010xlb.1_Silent_p.P2P	NM_003755	NP_003746	O75821	EIF3G_HUMAN	eukaryotic translation initiation factor 3,	2						cytosol|eukaryotic translation initiation factor 3 complex|nucleus|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0			OV - Ovarian serous cystadenocarcinoma(20;3.53e-09)|Epithelial(33;4.91e-06)|all cancers(31;1.1e-05)			AGTCTCCAGTAGGCATCGCAA	0.642000											OREG0025231	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	61					0	0	0.076483	0	0
ZNF627	199692	broad.mit.edu	37	19	11728624	11728624	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:11728624G>T	uc002msk.2	+	4	1514	c.1306G>T	c.(1306-1308)GTA>TTA	p.V436L	ZNF627_uc010dyf.2_Missense_Mutation_p.V326L	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	436	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TTACTTTCGAGTACATGAAAA	0.423000													36	102					1.836e-18	2.142e-18	0.064281	1	0
NXNL1	115861	broad.mit.edu	37	19	17571478	17571478	+	Silent	SNP	T	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:17571478T>G	uc002ngs.2	-	1	248	c.201A>C	c.(199-201)GTA>GTC	p.V67V		NM_138454	NP_612463	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	67	Thioredoxin.				cell redox homeostasis	nuclear outer membrane					0						CCGCCCGCAGTACATAGAACT	0.582000													4	137					0	0	0.009096	0	0
BCKDHA	593	broad.mit.edu	37	19	41928188	41928188	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:41928188C>G	uc002oqq.2	+	6	795	c.766C>G	c.(766-768)CTT>GTT	p.L256V	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Missense_Mutation_p.L290V|BCKDHA_uc002oqp.1_Missense_Mutation_p.L148V|BCKDHA_uc002oqr.2_Missense_Mutation_p.L256V|BCKDHA_uc010xvz.1_Missense_Mutation_p.L234V	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	256					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						CGCTGCCACACTTGAGTGCCC	0.612000													26	97					0	0	0.069456	0	0
GRHL1	29841	broad.mit.edu	37	2	10101557	10101557	+	Missense_Mutation	SNP	G	A	A	rs140278187		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:10101557G>A	uc002raa.2	+	4	832	c.661G>A	c.(661-663)GTT>ATT	p.V221I	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Silent_p.A57A|GRHL1_uc010yjb.1_Missense_Mutation_p.V70I	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	221					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		CAAGGAAGGCGTTCAGGAGGT	0.463000													47	108					0	0	0.139131	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95522772	95522772	+	RNA	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:95522772T>C	uc010fhp.2	-	1		c.49A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GCGCTCCACCTCCGCGGCGTC	0.682000													4	88					0	0	0.038147	0	0
TMEM37	140738	broad.mit.edu	37	2	120194829	120194829	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:120194829T>C	uc002tly.2	+	2	420	c.386T>C	c.(385-387)ATC>ACC	p.I129T		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	129						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						ATGGGTTCCATCCTCCTCCTG	0.567000													104	291					0	0	0.139131	0	0
NEB	4703	broad.mit.edu	37	2	152484285	152484285	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:152484285C>A	uc010fnx.2	-	65	9357	c.9166G>T	c.(9166-9168)GAT>TAT	p.D3056Y		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3056	Nebulin 83.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTGGGGTCATCTTCAATGTTC	0.453000													7	471					2.0095e-06	2.15134e-06	0.029380	1	0
KCNH7	90134	broad.mit.edu	37	2	163241347	163241347	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr2:163241347A>G	uc002uch.1	-	13	3025	c.2813T>C	c.(2812-2814)ATC>ACC	p.I938T		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	938	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AATGGAGGAGATGAAAGATGA	0.408000													117	273					0	0	0.139131	0	0
SLC5A3	6526	broad.mit.edu	37	21	35467607	35467607	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr21:35467607G>A	uc002yto.2	+	2	622	c.110G>A	c.(109-111)AGT>AAT	p.S37N	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	37	Extracellular (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						AGCACCGTGAGTGGATACTTC	0.488000													89	142					0	0	0.139131	0	0
SUSD2	56241	broad.mit.edu	37	22	24581140	24581140	+	Silent	SNP	C	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr22:24581140C>A	uc002zzn.1	+	6	905	c.861C>A	c.(859-861)GCC>GCA	p.A287A		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	287	AMOP.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCTGTGGCCTGGGCACGAA	0.662000													18	43					1.33834e-09	1.48523e-09	0.043863	1	0
TTLL1	25809	broad.mit.edu	37	22	43442517	43442517	+	Silent	SNP	C	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr22:43442517C>G	uc003bdi.2	-	10	1282	c.1041G>C	c.(1039-1041)CTG>CTC	p.L347L	TTLL1_uc010gzh.2_Silent_p.L318L|TTLL1_uc003bdj.2_Silent_p.L233L|TTLL1_uc003bdh.2_Silent_p.L309L	NM_012263	NP_036395	O95922	TTLL1_HUMAN	tubulin tyrosine ligase-like family, member 1	347	TTL.				protein polyglutamylation	cytoplasm|microtubule	ATP binding|tubulin-glutamic acid ligase activity|tubulin-tyrosine ligase activity			skin(1)	1		Ovarian(80;0.0694)		BRCA - Breast invasive adenocarcinoma(115;0.00461)		TGTCATTAATCAGGTTGTACT	0.512000													11	253					0	0	0.093190	0	0
GRM2	2912	broad.mit.edu	37	3	51746862	51746862	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:51746862C>T	uc010hlv.2	+	3	1063	c.824C>T	c.(823-825)GCC>GTC	p.A275V	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	275	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	TCTGAGGATGCCCGGGAGCTG	0.677000													4	94					0	0	0.009096	0	0
ITGB5	3693	broad.mit.edu	37	3	124515613	124515614	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:124515613_124515614CC>AT	uc003eho.2	-	10	1611_1612	c.1314_1315GG>AT	c.(1312-1317)ACGGAG>ACATAG	p.E439*	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	439	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		AACACATGCTCCGTGTGTCTGC	0.609000													19	55					0	0	0.115264	0	0
PCYT1A	5130	broad.mit.edu	37	3	195974373	195974373	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:195974373G>A	uc003fwg.2	-	6	524	c.351C>T	c.(349-351)CTC>CTT	p.L117L	PCYT1A_uc003fwh.2_Silent_p.L117L	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	117	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	AGTTGTGTGTGAGCTCATCAC	0.527000													53	149					0	0	0.139131	0	0
LRRC33	375387	broad.mit.edu	37	3	196387840	196387840	+	Silent	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:196387840C>T	uc003fwv.2	+	3	1430	c.1326C>T	c.(1324-1326)CCC>CCT	p.P442P		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	442	Extracellular (Potential).|LRR 15.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CACTTTGTCCCCTGCCAGCTG	0.592000													164	223					0	0	0.139131	0	0
CLOCK	9575	broad.mit.edu	37	4	56301654	56301654	+	Silent	SNP	A	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:56301654A>T	uc003haz.1	-	24	3395	c.2469T>A	c.(2467-2469)TCT>TCA	p.S823S	CLOCK_uc003hba.1_Silent_p.S823S|CLOCK_uc010igu.1_RNA	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	823	Poly-Gln.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			GCTGTTGCTGAGACTGATGTT	0.527000													50	113					0	0	0.139131	0	0
UGT2B7	7364	broad.mit.edu	37	4	69978199	69978199	+	Silent	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:69978199A>G	uc003heg.3	+	6	1381	c.1335A>G	c.(1333-1335)TTA>TTG	p.L445L	UGT2B7_uc010ihq.2_3'UTR	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	445					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTATGAAATTATCAAGAATTC	0.284000													59	167					0	0	0.139131	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86921691	86921691	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:86921691A>G	uc003hpk.2	+	10	2512	c.2063A>G	c.(2062-2064)GAT>GGT	p.D688G	ARHGAP24_uc003hpl.2_Missense_Mutation_p.D593G|ARHGAP24_uc010ikf.2_Missense_Mutation_p.D603G|ARHGAP24_uc003hpm.2_Missense_Mutation_p.D595G	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	688	Potential.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		GATGAACTGGATCAGGAGAGG	0.448000													46	63					0	0	0.131918	0	0
BMPR1B	658	broad.mit.edu	37	4	96025660	96025660	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:96025660G>A	uc003htm.3	+	4	359	c.85G>A	c.(85-87)GTC>ATC	p.V29I	BMPR1B_uc010ilb.2_Missense_Mutation_p.V29I|BMPR1B_uc003htn.3_Missense_Mutation_p.V29I	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	29	Extracellular (Potential).				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		CCGTCCAAAGGTCTTGCGTTG	0.423000													47	100					0	0	0.139131	0	0
SEMA5A	9037	broad.mit.edu	37	5	9226981	9226981	+	Silent	SNP	C	T	T	rs141767878		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr5:9226981C>T	uc003jek.2	-	7	1144	c.432G>A	c.(430-432)TCG>TCA	p.S144S		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	144	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GAAGCCATACCGAGCGGTTGG	0.438000													5	89					0	0	0.021553	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128956361	128956361	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr5:128956361A>G	uc003kvb.1	+	9	1511	c.1511A>G	c.(1510-1512)CAT>CGT	p.H504R	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	504	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GATGGTCTTCATATCATGTCT	0.373000													10	241					0	0	0.069234	0	0
GABRG2	2566	broad.mit.edu	37	5	161576298	161576298	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr5:161576298A>T	uc003lyz.3	+	8	1465	c.1107A>T	c.(1105-1107)AAA>AAT	p.K369N	GABRG2_uc010jjc.2_Missense_Mutation_p.K409N|GABRG2_uc003lyy.3_Missense_Mutation_p.K369N|GABRG2_uc011dej.1_Missense_Mutation_p.K274N	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	369	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GCAAGGACAAAGATAAAAAGA	0.373000													51	102					0	0	0.139131	0	0
VARS	7407	broad.mit.edu	37	6	31753451	31753451	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr6:31753451G>A	uc003nxe.2	-	9	1583	c.1160C>T	c.(1159-1161)GCC>GTC	p.A387V	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	387					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CACCTGGGTGGCAATACCTGC	0.632000													4	122					0	0	0.009096	0	0
DST	667	broad.mit.edu	37	6	56499603	56499603	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr6:56499603A>C	uc003pdf.2	-	24	3264	c.3236T>G	c.(3235-3237)ATT>AGT	p.I1079S	DST_uc003pcz.3_Missense_Mutation_p.I901S|DST_uc011dxj.1_Missense_Mutation_p.I930S|DST_uc011dxk.1_Missense_Mutation_p.I941S|DST_uc003pcy.3_Missense_Mutation_p.I575S|DST_uc003pdb.2_Missense_Mutation_p.I575S|DST_uc003pdc.3_Missense_Mutation_p.I575S|DST_uc003pdd.3_Missense_Mutation_p.I575S	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	901	SH3.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AAGTACCTCAATTTGTCTGTA	0.358000													97	200					0	0	0.139131	0	0
FAM135A	57579	broad.mit.edu	37	6	71234676	71234676	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr6:71234676T>A	uc003pfj.2	+	13	2022	c.1889T>A	c.(1888-1890)ATG>AAG	p.M630K	FAM135A_uc003pfi.2_Missense_Mutation_p.M434K|FAM135A_uc003pfh.2_Missense_Mutation_p.M417K|FAM135A_uc003pfl.2_Missense_Mutation_p.M297K|FAM135A_uc003pfn.2_Missense_Mutation_p.M60K|FAM135A_uc003pfo.1_Missense_Mutation_p.M1K	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	630										central_nervous_system(1)	1						ATTACACAAATGGAACACAAT	0.393000													47	69					0	0	0.139131	0	0
POU6F2	11281	broad.mit.edu	37	7	39500263	39500263	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:39500263A>G	uc003thb.1	+	9	1562	c.1520A>G	c.(1519-1521)CAG>CGG	p.Q507R		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	507	POU-specific.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CAGGTGGGACAGGCTCTCAGT	0.602000													7	14					0	0	0.047766	0	0
AP4M1	9179	broad.mit.edu	37	7	99700326	99700326	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:99700326T>C	uc003utb.3	+	3	384	c.176T>C	c.(175-177)ATC>ACC	p.I59T	MCM7_uc003usv.1_5'Flank|MCM7_uc003usw.1_5'Flank|MCM7_uc003usx.1_5'Flank|AP4M1_uc011kjg.1_Missense_Mutation_p.I59T|AP4M1_uc010lgl.1_Missense_Mutation_p.I59T|AP4M1_uc003utc.3_Missense_Mutation_p.I66T|AP4M1_uc010lgm.2_5'UTR|AP4M1_uc003utd.2_Missense_Mutation_p.I59T|AP4M1_uc011kjh.1_Missense_Mutation_p.I11T|AP4M1_uc003ute.3_5'UTR|AP4M1_uc003utf.3_5'UTR	NM_004722	NP_004713	O00189	AP4M1_HUMAN	adaptor-related protein complex 4, mu 1 subunit	59					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|coated pit|Golgi trans cisterna	transporter activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TTCATTCACATCAGACACAGC	0.403000													47	175					0	0	0.139131	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117364734	117364734	+	Silent	SNP	T	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:117364734T>A	uc003vjf.2	-	19	4406	c.4314A>T	c.(4312-4314)ATA>ATT	p.I1438I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1438										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		AACTGGAAACTATGGATAAAG	0.438000													46	113					0	0	0.139131	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117396642	117396642	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:117396642G>A	uc003vjf.2	-	12	3407	c.3315C>T	c.(3313-3315)ATC>ATT	p.I1105I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1105										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		TCTGGAGAGGGATCATGGAGG	0.498000													7	194					0	0	0.047766	0	0
ARF5	381	broad.mit.edu	37	7	127229193	127229193	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:127229193A>G	uc003vmb.1	+	2	160	c.124A>G	c.(124-126)ATT>GTT	p.I42V	ARF5_uc010llb.1_Missense_Mutation_p.I42V|FSCN3_uc003vmc.1_5'Flank	NM_001662	NP_001653	P84085	ARF5_HUMAN	ADP-ribosylation factor 5	42					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	Golgi apparatus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1						GTTGGGGGAGATTGTCACCAC	0.632000											OREG0018287	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	64					0	0	0.069456	0	0
KRBA1	84626	broad.mit.edu	37	7	149422542	149422542	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:149422542G>C	uc003wfz.2	+	10	1662	c.1263G>C	c.(1261-1263)CAG>CAC	p.Q421H	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Missense_Mutation_p.Q89H	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	421										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTAGGTCTCAGAAGCCTGAAC	0.597000													3	37					0	0	0.009096	0	0
KIAA1429	25962	broad.mit.edu	37	8	95507107	95507107	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr8:95507107A>G	uc003ygo.1	-	20	4635	c.4622T>C	c.(4621-4623)ATA>ACA	p.I1541T	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1541					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			ATCTGTATCTATCTCTTCAGC	0.318000													6	311					0	0	0.021553	0	0
ABRA	137735	broad.mit.edu	37	8	107782408	107782408	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr8:107782408C>A	uc003ymm.3	-	1	65	c.11G>T	c.(10-12)GGC>GTC	p.G4V		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	4					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			TTCCTTTTCGCCCGGAGCCAT	0.597000													21	77					3.62473e-10	4.07223e-10	0.062417	1	0
MRPL13	28998	broad.mit.edu	37	8	121455496	121455496	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr8:121455496G>A	uc003ypa.2	-	2	393	c.80C>T	c.(79-81)CCA>CTA	p.P27L	MTBP_uc003ypc.1_5'Flank|MRPL13_uc010mdf.2_RNA|MTBP_uc003ypb.1_5'Flank|MTBP_uc011lie.1_5'Flank	NM_014078	NP_054797	Q9BYD1	RM13_HUMAN	mitochondrial ribosomal protein L13	27					translation	mitochondrial large ribosomal subunit	protein binding|structural constituent of ribosome			central_nervous_system(1)	1	Lung NSC(37;1.69e-07)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TTTGCCAGGTGGCTGCATTTT	0.373000													55	115					0	0	0.139131	0	0
CYHR1	50626	broad.mit.edu	37	8	145690192	145690192	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr8:145690192C>G	uc003zcv.2	-	1	227	c.93G>C	c.(91-93)GAG>GAC	p.E31D	CYHR1_uc003zcw.2_Missense_Mutation_p.E31D|CYHR1_uc003zcx.2_Missense_Mutation_p.E31D|CYHR1_uc003zcy.2_Missense_Mutation_p.E31D|KIFC2_uc003zcz.2_5'Flank	NM_138496	NP_612505	Q6ZMK1	CYHR1_HUMAN	cysteine/histidine-rich 1 isoform 1	31						perinuclear region of cytoplasm	zinc ion binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GTGTACTCACCTCGGCTGTGC	0.627000													12	26					0	0	0.033300	0	0
FREM1	158326	broad.mit.edu	37	9	14824065	14824065	+	Silent	SNP	T	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr9:14824065T>G	uc003zlm.2	-	12	2717	c.2127A>C	c.(2125-2127)GTA>GTC	p.V709V	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	709	CSPG 4.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GATTCTTAACTACTTTTGGTA	0.408000													5	17					0	0	0.014758	0	0
TNFSF8	944	broad.mit.edu	37	9	117666220	117666220	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr9:117666220A>C	uc004bji.1	-	4	883	c.696T>G	c.(694-696)AAT>AAG	p.N232K		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	232	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						TTCAGTCTGAATTACTGTATA	0.408000													72	165					0	0	0.139131	0	0
TOR1A	1861	broad.mit.edu	37	9	132584984	132584984	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr9:132584984C>T	uc004byl.2	-	2	397	c.320G>A	c.(319-321)GGC>GAC	p.G107D	TOR1A_uc004bym.2_RNA|TOR1A_uc004byn.2_Missense_Mutation_p.G107D	NM_000113	NP_000104	O14656	TOR1A_HUMAN	torsin A precursor	107	ATP.				chaperone mediated protein folding requiring cofactor|response to unfolded protein	endoplasmic reticulum lumen|nuclear membrane	ATP binding|serine-type endopeptidase activity|unfolded protein binding			central_nervous_system(1)	1		Ovarian(14;0.00556)				GAAATTTTTGCCGGTGCCTGT	0.468000													6	352					0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	MT	4037	4037	+	RNA	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chrM:4037G>A	uc004cos.3	+	2		c.2330G>A			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		AATCTTCCTAGGAACAACATA	0.428000													3	72					0	0	0.115264	0	0
Unknown	0	broad.mit.edu	37	MT	8060	8060	+	RNA	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chrM:8060G>A	uc004cou.3	+	1		c.475G>A			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		CATCACAAGACGTCTTGCACT	0.478000													7	59					0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	MT	8279	8279	+	RNA	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chrM:8279T>C	uc004cou.3	+	1		c.694T>C			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		AGCACCCCCTCTACCCCCTCT	0.413000													6	38					0	0	0.047766	0	0
MST1P2	11209	broad.mit.edu	37	1	16976825	16976825	+	RNA	SNP	C	A	A	rs2761525	by1000genomes	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:16976825C>A	uc010och.1	+	14		c.2546C>A			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						taataaaattcatatttttac	0.164000													3	29					0.00198382	0.00210333	0.001984	1	0
LRIG2	9860	broad.mit.edu	37	1	113616165	113616165	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:113616165C>A	uc001edf.1	+	1	335	c.137C>A	c.(136-138)CCC>CAC	p.P46H	LRIG2_uc009wgn.1_5'UTR|uc001ede.1_5'Flank	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	46	LRRNT.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TGCCCCGCGCCCTGCTCCTGC	0.652000											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	94	305					7.68471e-68	9.26376e-68	0.014410	1	0
ATP1A1	476	broad.mit.edu	37	1	116941400	116941400	+	Missense_Mutation	SNP	G	C	C	rs11540954		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:116941400G>C	uc001ege.2	+	16	2621	c.2282G>C	c.(2281-2283)GGA>GCA	p.G761A	ATP1A1_uc010owv.1_Missense_Mutation_p.G730A|ATP1A1_uc010oww.1_Missense_Mutation_p.G761A|ATP1A1_uc010owx.1_Missense_Mutation_p.G730A|C1orf203_uc009whb.2_Intron|ATP1A1_uc001egh.2_5'Flank	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	761	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	ATTGTGACTGGAGTAGAGGAA	0.438000													31	62					0	0	0.010818	0	0
ATP1B1	481	broad.mit.edu	37	1	169096584	169096584	+	RNA	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:169096584T>C	uc001gfs.1	+	4		c.626T>C			uc010plp.1_5'Flank			P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					AACTTATGGCTACAAAGAGGG	0.388000													8	22					0	0	0.008291	0	0
GOLT1A	127845	broad.mit.edu	37	1	204183026	204183026	+	Silent	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:204183026G>T	uc001has.1	-	1	195	c.9C>A	c.(7-9)TCC>TCA	p.S3S	GOLT1A_uc001hat.1_Silent_p.S3S	NM_198447	NP_940849	Q6ZVE7	GOT1A_HUMAN	golgi transport 1 homolog A	3	Cytoplasmic (Potential).				protein transport|vesicle-mediated transport	Golgi membrane|integral to membrane					0	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.244)			ATTCGGTGATGGAGATCATGC	0.642000													16	42					4.63292e-17	5.36444e-17	0.008871	1	0
FAM188A	80013	broad.mit.edu	37	10	15879212	15879212	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr10:15879212T>A	uc001iod.1	-	6	788	c.567A>T	c.(565-567)TTA>TTT	p.L189F	FAM188A_uc001ioe.1_Missense_Mutation_p.L16F|FAM188A_uc001iof.1_Missense_Mutation_p.L189F	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	189					apoptosis	nucleus	calcium ion binding			ovary(1)	1						CCTTTGTCAGTAATACAGAAT	0.353000													6	12					0	0	0.003080	0	0
TNKS2	80351	broad.mit.edu	37	10	93593686	93593686	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr10:93593686T>C	uc001khp.2	+	12	1649	c.1352T>C	c.(1351-1353)CTA>CCA	p.L451P		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	451	ANK 9.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				ACCTGCCGCCTACTCCTGAGC	0.413000													15	27					0	0	0.020292	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075425	106075425	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr10:106075425C>T	uc001kye.2	-	2	458	c.385G>A	c.(385-387)GCC>ACC	p.A129T	ITPRIP_uc001kyf.2_Missense_Mutation_p.A129T|ITPRIP_uc001kyg.2_Missense_Mutation_p.A129T	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	129						plasma membrane					0						TGCAAGGGGGCGCCCCCCAGC	0.692000													71	154					0	0	0.014410	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955994	18955994	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr11:18955994A>T	uc001mpg.2	-	1	556	c.338T>A	c.(337-339)CTG>CAG	p.L113Q		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	113	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CACGGCACTCAGAAAGCTCAG	0.542000													10	255					0	0	0.006214	0	0
OR4C11	219429	broad.mit.edu	37	11	55371692	55371692	+	Missense_Mutation	SNP	A	T	T	rs151111921	byFrequency	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr11:55371692A>T	uc010rii.1	-	1	158	c.158T>A	c.(157-159)CTA>CAA	p.L53Q		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGGCTTCCTAGTGTCCGGCT	0.398000													7	14					0	0	0.003080	0	0
ABCG4	64137	broad.mit.edu	37	11	119027678	119027678	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr11:119027678G>T	uc001pvs.2	+	9	1358	c.1022G>T	c.(1021-1023)AGC>ATC	p.S341I	ABCG4_uc009zar.2_Missense_Mutation_p.S341I	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	341	Cytoplasmic (Potential).				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		AAGAAGAGCAGCCCTGAGAAG	0.607000													105	266					1.92787e-56	2.2926e-56	0.014410	1	0
DDX12	440081	broad.mit.edu	37	12	9573997	9573997	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr12:9573997T>G	uc010sgs.1	-	20	2234	c.2039A>C	c.(2038-2040)GAC>GCC	p.D680A	DDX12_uc001qvx.3_5'Flank|DDX12_uc001qvy.1_5'Flank	NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						CTGAGGCAGGTCTCTCTTCTG	0.617000													6	20					0	0	0.014410	0	0
WDR66	144406	broad.mit.edu	37	12	122413567	122413567	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr12:122413567T>C	uc009zxk.2	+	19	3124	c.2982T>C	c.(2980-2982)ATT>ATC	p.I994I		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	994							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		TGAGAGCAATTGGCTTTTACC	0.438000													46	122					0	0	0.014410	0	0
JAG2	3714	broad.mit.edu	37	14	105622266	105622266	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr14:105622266T>C	uc001yqg.2	-	4	940	c.536A>G	c.(535-537)AAG>AGG	p.K179R	JAG2_uc001yqh.2_Missense_Mutation_p.K179R	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	179	Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GTGCAGGCTCTTCCAGCGGTC	0.632000													19	38					0	0	0.012319	0	0
TMC3	342125	broad.mit.edu	37	15	81648105	81648105	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr15:81648105G>A	uc002bgo.1	-	9	896	c.896C>T	c.(895-897)GCT>GTT	p.A299V	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.A299V	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	299	Extracellular (Potential).					integral to membrane				ovary(1)|liver(1)	2						TTCCAATATAGCTTCCTTTAA	0.284000													15	44					0	0	0.024245	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85055802	85055802	+	RNA	SNP	C	A	A	rs1727704		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr15:85055802C>A	uc002bkm.2	-	6		c.758G>T				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						GCCTCTCCTCCTGTTCACGTA	0.552000													3	10					0.004672	0.00489448	0.004672	1	0
ADAMTS17	170691	broad.mit.edu	37	15	100657190	100657190	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr15:100657190C>T	uc002bvv.1	-	13	1829	c.1750G>A	c.(1750-1752)GGT>AGT	p.G584S	ADAMTS17_uc002bvx.1_Missense_Mutation_p.G341S	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	584	TSP type-1 1.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		ACACTGGCACCCGGGCAGTGT	0.632000													24	56					0	0	0.018920	0	0
IFT140	9742	broad.mit.edu	37	16	1608090	1608090	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:1608090G>T	uc002cmb.2	-	19	2607	c.2245C>A	c.(2245-2247)CAC>AAC	p.H749N	IFT140_uc002clz.2_Missense_Mutation_p.H400N	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	749										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGAGGGATGTGGTGGCACCCA	0.552000													267	471					1.22476e-156	1.49693e-156	0.014410	1	0
HCFC1R1	54985	broad.mit.edu	37	16	3073346	3073346	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:3073346G>C	uc002csx.1	-	4	302	c.169C>G	c.(169-171)CAG>GAG	p.Q57E	HCFC1R1_uc002csy.1_Missense_Mutation_p.Q57E|HCFC1R1_uc002csz.1_Missense_Mutation_p.Q38E|THOC6_uc002ctb.2_5'Flank|THOC6_uc002ctd.2_5'Flank|THOC6_uc002ctc.2_5'Flank|THOC6_uc002cta.2_5'Flank	NM_001002018	NP_001002018	Q9NWW0	HPIP_HUMAN	host cell factor C1 regulator 1 (XPO1 dependant)	57						cytoplasm|nucleus					0						GACAGAAACTGCTTGCGCAGA	0.592000													8	402					0	0	0.004482	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254000													10	42					0	0	0.010729	0	0
RBBP6	5930	broad.mit.edu	37	16	24551952	24551952	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:24551952C>G	uc002dmh.2	+	1	1045	c.5C>G	c.(4-6)TCC>TGC	p.S2C	RBBP6_uc010vcb.1_Intron|RBBP6_uc002dmg.2_Missense_Mutation_p.S2C|RBBP6_uc002dmi.2_Missense_Mutation_p.S2C|RBBP6_uc010bxr.2_Missense_Mutation_p.S2C	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	2					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GGCACCATGTCCTGTGTGCAT	0.408000													4	230					0	0	0.014758	0	0
MNT	4335	broad.mit.edu	37	17	2298597	2298597	+	Silent	SNP	T	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:2298597T>G	uc002fur.2	-	2	477	c.225A>C	c.(223-225)GCA>GCC	p.A75A		NM_020310	NP_064706	Q99583	MNT_HUMAN	MAX binding protein	75					multicellular organismal development|negative regulation of cell proliferation|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			skin(1)	1				Colorectal(2;1.37e-05)|READ - Rectum adenocarcinoma(2;8.68e-05)		gtggtgggggtgccggcgggg	0.204000													6	18					0	0	0.018920	0	0
KIAA0664	23277	broad.mit.edu	37	17	2604434	2604434	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:2604434C>T	uc002fuy.1	-	7	997	c.911G>A	c.(910-912)AGG>AAG	p.R304K	KIAA0664_uc002fux.1_Missense_Mutation_p.R236K	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	304							binding			breast(2)	2						AAGGCACTACCTTTTCTTCTG	0.602000													52	73					0	0	0.014410	0	0
ASGR1	432	broad.mit.edu	37	17	7081872	7081872	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:7081872T>G	uc002ges.3	-	2	421	c.11A>C	c.(10-12)GAG>GCG	p.E4A	ASGR1_uc010clx.1_5'Flank	NM_001671	NP_001662	P07306	ASGR1_HUMAN	asialoglycoprotein receptor 1	4	Cytoplasmic (Probable).				receptor-mediated endocytosis	integral to plasma membrane	asialoglycoprotein receptor activity|metal ion binding|sugar binding			breast(1)|central_nervous_system(1)	2						GTCTTGATACTCCTTGGTCAT	0.378000													93	102					0	0	0.014410	0	0
PFAS	5198	broad.mit.edu	37	17	8170542	8170542	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:8170542C>T	uc002gkr.2	+	24	3305	c.3164C>T	c.(3163-3165)CCC>CTC	p.P1055L	PFAS_uc010vuv.1_Missense_Mutation_p.P631L|PFAS_uc002gks.2_Missense_Mutation_p.P134L	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	1055					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCCTCCGTGCCCCGTGAGCCT	0.677000													21	47					0	0	0.016522	0	0
LOC284100	284100	broad.mit.edu	37	17	36214775	36214775	+	RNA	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:36214775G>T	uc002hom.1	-	2		c.184C>A			LOC284100_uc002hon.1_RNA					Homo sapiens cDNA FLJ37577 fis, clone BRCOC2003513, moderately similar to 14-3-3 protein epsilon (14-3-3E).												0						CTTGCCAGTGGTAGCTGCTGG	0.353000													4	24					2.56e-06	2.78123e-06	0.009096	1	0
MAP3K14	9020	broad.mit.edu	37	17	43364549	43364549	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:43364549C>T	uc002iiw.1	-	4	617	c.508G>A	c.(508-510)GAG>AAG	p.E170K	MAP3K14_uc010daj.1_5'Flank|MAP3K14_uc002iiv.1_5'UTR	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	170					cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						CTCTCCTGCTCAGGGGTCCTG	0.617000													27	102					0	0	0.007291	0	0
ACE	1636	broad.mit.edu	37	17	61562641	61562641	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:61562641T>C	uc002jau.1	+	13	1988	c.1966T>C	c.(1966-1968)TAT>CAT	p.Y656H	ACE_uc010ddu.1_Missense_Mutation_p.Y473H|ACE_uc002jav.1_Missense_Mutation_p.Y82H|ACE_uc010ddv.1_5'UTR|ACE_uc010wpj.1_Missense_Mutation_p.Y82H|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_5'UTR	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	656	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TGTGGAGGAATATGACCGGAC	0.552000													80	92					0	0	0.014410	0	0
VPS4B	9525	broad.mit.edu	37	18	61058289	61058289	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr18:61058289T>C	uc002lix.2	-	11	1514	c.1254A>G	c.(1252-1254)CTA>CTG	p.L418L		NM_004869	NP_004860	O75351	VPS4B_HUMAN	vacuolar protein sorting factor 4B	418					cell cycle|cell division|cellular membrane organization|endosome to lysosome transport via multivesicular body sorting pathway|intracellular cholesterol transport|protein transport|response to lipid	cytosol|early endosome|late endosome membrane|lysosome|nucleus|vacuolar membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding			ovary(1)	1						TTGTGTTAGATAGTGACCGCA	0.348000													21	153					0	0	0.012319	0	0
DAZAP1	26528	broad.mit.edu	37	19	1428875	1428875	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:1428875A>G	uc002lsn.2	+	8	770	c.581A>G	c.(580-582)AAG>AGG	p.K194R	DAZAP1_uc002lsm.2_Missense_Mutation_p.K194R|DAZAP1_uc002lso.2_Missense_Mutation_p.K193R|DAZAP1_uc002lsl.1_Missense_Mutation_p.K194R	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	194					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGGACAGCAAGAGCCAAGCG	0.657000													35	87					0	0	0.008740	0	0
EEF2	1938	broad.mit.edu	37	19	3979985	3979985	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:3979985C>T	uc002lze.2	-	10	1509	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	476						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGAACTGGTCCACGCCCACG	0.592000													31	105					0	0	0.009535	0	0
EIF3G	8666	broad.mit.edu	37	19	10230530	10230530	+	Silent	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:10230530A>G	uc002mnd.2	-	1	70	c.6T>C	c.(4-6)CCT>CCC	p.P2P	EIF3G_uc010dxa.2_Silent_p.P2P|EIF3G_uc010xlb.1_Silent_p.P2P	NM_003755	NP_003746	O75821	EIF3G_HUMAN	eukaryotic translation initiation factor 3,	2						cytosol|eukaryotic translation initiation factor 3 complex|nucleus|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0			OV - Ovarian serous cystadenocarcinoma(20;3.53e-09)|Epithelial(33;4.91e-06)|all cancers(31;1.1e-05)			AGTCTCCAGTAGGCATCGCAA	0.642000											OREG0025231	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	109					0	0	0.014410	0	0
ZNF627	199692	broad.mit.edu	37	19	11728624	11728624	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:11728624G>T	uc002msk.2	+	4	1514	c.1306G>T	c.(1306-1308)GTA>TTA	p.V436L	ZNF627_uc010dyf.2_Missense_Mutation_p.V326L	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	436	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TTACTTTCGAGTACATGAAAA	0.423000													17	46					3.32936e-07	3.6623e-07	0.006122	1	0
NXNL1	115861	broad.mit.edu	37	19	17571478	17571478	+	Silent	SNP	T	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:17571478T>G	uc002ngs.2	-	1	248	c.201A>C	c.(199-201)GTA>GTC	p.V67V		NM_138454	NP_612463	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	67	Thioredoxin.				cell redox homeostasis	nuclear outer membrane					0						CCGCCCGCAGTACATAGAACT	0.582000													12	279					0	0	0.013537	0	0
BCKDHA	593	broad.mit.edu	37	19	41928188	41928188	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:41928188C>G	uc002oqq.2	+	6	795	c.766C>G	c.(766-768)CTT>GTT	p.L256V	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Missense_Mutation_p.L290V|BCKDHA_uc002oqp.1_Missense_Mutation_p.L148V|BCKDHA_uc002oqr.2_Missense_Mutation_p.L256V|BCKDHA_uc010xvz.1_Missense_Mutation_p.L234V	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	256					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						CGCTGCCACACTTGAGTGCCC	0.612000													55	147					0	0	0.014410	0	0
VRK3	51231	broad.mit.edu	37	19	50500776	50500776	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:50500776C>T	uc002prg.2	-	7	762	c.664G>A	c.(664-666)GCC>ACC	p.A222T	VRK3_uc002prh.1_Missense_Mutation_p.A222T|VRK3_uc002pri.1_Missense_Mutation_p.A172T|VRK3_uc010ens.2_Missense_Mutation_p.A222T|VRK3_uc010ybl.1_Missense_Mutation_p.A172T|VRK3_uc010ybm.1_Intron|VRK3_uc002prj.1_Missense_Mutation_p.A172T|VRK3_uc002prk.1_Missense_Mutation_p.A222T|VRK3_uc010ent.1_5'UTR|VRK3_uc002prl.2_Missense_Mutation_p.A222T|VRK3_uc010ybn.1_Intron	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	222	Protein kinase.					nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		AGAGGCTTGGCGGCCCGCTGG	0.592000													4	57					0	0	0.009096	0	0
GRHL1	29841	broad.mit.edu	37	2	10101557	10101557	+	Missense_Mutation	SNP	G	A	A	rs140278187		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr2:10101557G>A	uc002raa.2	+	4	832	c.661G>A	c.(661-663)GTT>ATT	p.V221I	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Silent_p.A57A|GRHL1_uc010yjb.1_Missense_Mutation_p.V70I	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	221					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		CAAGGAAGGCGTTCAGGAGGT	0.463000													45	96					0	0	0.010771	0	0
TMEM37	140738	broad.mit.edu	37	2	120194829	120194829	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr2:120194829T>C	uc002tly.2	+	2	420	c.386T>C	c.(385-387)ATC>ACC	p.I129T		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	129						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						ATGGGTTCCATCCTCCTCCTG	0.567000													204	516					0	0	0.014410	0	0
PTPN18	26469	broad.mit.edu	37	2	131130764	131130764	+	Silent	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr2:131130764C>T	uc002trc.2	+	15	1451	c.1350C>T	c.(1348-1350)CCC>CCT	p.P450P	PTPN18_uc002trd.2_Silent_p.P429P|PTPN18_uc002trb.2_Silent_p.P343P|PTPN18_uc002tre.2_Silent_p.P101P	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	450						cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					CGAAGGGTCCCCGGGACCCGC	0.617000													4	53					0	0	0.009096	0	0
KCNH7	90134	broad.mit.edu	37	2	163241347	163241347	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr2:163241347A>G	uc002uch.1	-	13	3025	c.2813T>C	c.(2812-2814)ATC>ACC	p.I938T		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	938	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AATGGAGGAGATGAAAGATGA	0.408000													15	25					0	0	0.006122	0	0
SLC5A3	6526	broad.mit.edu	37	21	35467607	35467607	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr21:35467607G>A	uc002yto.2	+	2	622	c.110G>A	c.(109-111)AGT>AAT	p.S37N	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	37	Extracellular (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						AGCACCGTGAGTGGATACTTC	0.488000													14	42					0	0	0.028581	0	0
SUSD2	56241	broad.mit.edu	37	22	24581140	24581140	+	Silent	SNP	C	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr22:24581140C>A	uc002zzn.1	+	6	905	c.861C>A	c.(859-861)GCC>GCA	p.A287A		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	287	AMOP.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCTGTGGCCTGGGCACGAA	0.662000													28	85					1.75199e-13	1.9766e-13	0.007291	1	0
TTLL1	25809	broad.mit.edu	37	22	43442517	43442517	+	Silent	SNP	C	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr22:43442517C>G	uc003bdi.2	-	10	1282	c.1041G>C	c.(1039-1041)CTG>CTC	p.L347L	TTLL1_uc010gzh.2_Silent_p.L318L|TTLL1_uc003bdj.2_Silent_p.L233L|TTLL1_uc003bdh.2_Silent_p.L309L	NM_012263	NP_036395	O95922	TTLL1_HUMAN	tubulin tyrosine ligase-like family, member 1	347	TTL.				protein polyglutamylation	cytoplasm|microtubule	ATP binding|tubulin-glutamic acid ligase activity|tubulin-tyrosine ligase activity			skin(1)	1		Ovarian(80;0.0694)		BRCA - Breast invasive adenocarcinoma(115;0.00461)		TGTCATTAATCAGGTTGTACT	0.512000													13	420					0	0	0.016723	0	0
ITGB5	3693	broad.mit.edu	37	3	124515613	124515614	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr3:124515613_124515614CC>AT	uc003eho.2	-	10	1611_1612	c.1314_1315GG>AT	c.(1312-1317)ACGGAG>ACATAG	p.E439*	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	439	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		AACACATGCTCCGTGTGTCTGC	0.609000													24	100					0	0	0.004672	0	0
PCYT1A	5130	broad.mit.edu	37	3	195974373	195974373	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr3:195974373G>A	uc003fwg.2	-	6	524	c.351C>T	c.(349-351)CTC>CTT	p.L117L	PCYT1A_uc003fwh.2_Silent_p.L117L	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	117	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	AGTTGTGTGTGAGCTCATCAC	0.527000													73	246					0	0	0.014410	0	0
LRRC33	375387	broad.mit.edu	37	3	196387840	196387840	+	Silent	SNP	C	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr3:196387840C>T	uc003fwv.2	+	3	1430	c.1326C>T	c.(1324-1326)CCC>CCT	p.P442P		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	442	Extracellular (Potential).|LRR 15.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CACTTTGTCCCCTGCCAGCTG	0.592000													323	388					0	0	0.014410	0	0
CLOCK	9575	broad.mit.edu	37	4	56301654	56301654	+	Silent	SNP	A	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:56301654A>T	uc003haz.1	-	24	3395	c.2469T>A	c.(2467-2469)TCT>TCA	p.S823S	CLOCK_uc003hba.1_Silent_p.S823S|CLOCK_uc010igu.1_RNA	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	823	Poly-Gln.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			GCTGTTGCTGAGACTGATGTT	0.527000													10	37					0	0	0.013537	0	0
UGT2B7	7364	broad.mit.edu	37	4	69978199	69978199	+	Silent	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:69978199A>G	uc003heg.3	+	6	1381	c.1335A>G	c.(1333-1335)TTA>TTG	p.L445L	UGT2B7_uc010ihq.2_3'UTR	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	445					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTATGAAATTATCAAGAATTC	0.284000													12	26					0	0	0.010729	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86921691	86921691	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:86921691A>G	uc003hpk.2	+	10	2512	c.2063A>G	c.(2062-2064)GAT>GGT	p.D688G	ARHGAP24_uc003hpl.2_Missense_Mutation_p.D593G|ARHGAP24_uc010ikf.2_Missense_Mutation_p.D603G|ARHGAP24_uc003hpm.2_Missense_Mutation_p.D595G	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	688	Potential.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		GATGAACTGGATCAGGAGAGG	0.448000													12	20					0	0	0.010729	0	0
BMPR1B	658	broad.mit.edu	37	4	96025660	96025660	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:96025660G>A	uc003htm.3	+	4	359	c.85G>A	c.(85-87)GTC>ATC	p.V29I	BMPR1B_uc010ilb.2_Missense_Mutation_p.V29I|BMPR1B_uc003htn.3_Missense_Mutation_p.V29I	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	29	Extracellular (Potential).				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		CCGTCCAAAGGTCTTGCGTTG	0.423000													4	15					0	0	0.021553	0	0
TBCK	93627	broad.mit.edu	37	4	107092373	107092373	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:107092373G>A	uc010ilv.2	-	23	2479	c.2114C>T	c.(2113-2115)CCT>CTT	p.P705L	TBCK_uc003hyb.2_Missense_Mutation_p.P448L|TBCK_uc003hye.2_Missense_Mutation_p.P666L|TBCK_uc003hyc.2_Missense_Mutation_p.P642L|TBCK_uc003hyd.2_Missense_Mutation_p.P533L|TBCK_uc003hyf.2_Missense_Mutation_p.P705L	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	705						intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						AGCACTTTTAGGAGTCCAACA	0.398000													3	24					0	0	0.004672	0	0
SEMA5A	9037	broad.mit.edu	37	5	9226981	9226981	+	Silent	SNP	C	T	T	rs141767878		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr5:9226981C>T	uc003jek.2	-	7	1144	c.432G>A	c.(430-432)TCG>TCA	p.S144S		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	144	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GAAGCCATACCGAGCGGTTGG	0.438000													6	130					0	0	0.003080	0	0
GABRG2	2566	broad.mit.edu	37	5	161576298	161576298	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr5:161576298A>T	uc003lyz.3	+	8	1465	c.1107A>T	c.(1105-1107)AAA>AAT	p.K369N	GABRG2_uc010jjc.2_Missense_Mutation_p.K409N|GABRG2_uc003lyy.3_Missense_Mutation_p.K369N|GABRG2_uc011dej.1_Missense_Mutation_p.K274N	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	369	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GCAAGGACAAAGATAAAAAGA	0.373000													8	30					0	0	0.003080	0	0
DST	667	broad.mit.edu	37	6	56499603	56499603	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr6:56499603A>C	uc003pdf.2	-	24	3264	c.3236T>G	c.(3235-3237)ATT>AGT	p.I1079S	DST_uc003pcz.3_Missense_Mutation_p.I901S|DST_uc011dxj.1_Missense_Mutation_p.I930S|DST_uc011dxk.1_Missense_Mutation_p.I941S|DST_uc003pcy.3_Missense_Mutation_p.I575S|DST_uc003pdb.2_Missense_Mutation_p.I575S|DST_uc003pdc.3_Missense_Mutation_p.I575S|DST_uc003pdd.3_Missense_Mutation_p.I575S	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	901	SH3.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AAGTACCTCAATTTGTCTGTA	0.358000													47	112					0	0	0.013114	0	0
FAM135A	57579	broad.mit.edu	37	6	71234676	71234676	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr6:71234676T>A	uc003pfj.2	+	13	2022	c.1889T>A	c.(1888-1890)ATG>AAG	p.M630K	FAM135A_uc003pfi.2_Missense_Mutation_p.M434K|FAM135A_uc003pfh.2_Missense_Mutation_p.M417K|FAM135A_uc003pfl.2_Missense_Mutation_p.M297K|FAM135A_uc003pfn.2_Missense_Mutation_p.M60K|FAM135A_uc003pfo.1_Missense_Mutation_p.M1K	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	630										central_nervous_system(1)	1						ATTACACAAATGGAACACAAT	0.393000													11	10					0	0	0.016723	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95665021	95665021	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:95665021G>A	uc003uoc.3	+	13	1649	c.1372G>A	c.(1372-1374)GGC>AGC	p.G458S	DYNC1I1_uc003uod.3_Missense_Mutation_p.G441S|DYNC1I1_uc003uob.2_Missense_Mutation_p.G421S|DYNC1I1_uc003uoe.3_Missense_Mutation_p.G438S|DYNC1I1_uc010lfl.2_Missense_Mutation_p.G447S	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	458	WD 4.				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			CTTCGTGGTTGGCAGTGAGGA	0.463000													3	69					0	0	0.004672	0	0
AP4M1	9179	broad.mit.edu	37	7	99700326	99700326	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:99700326T>C	uc003utb.3	+	3	384	c.176T>C	c.(175-177)ATC>ACC	p.I59T	MCM7_uc003usv.1_5'Flank|MCM7_uc003usw.1_5'Flank|MCM7_uc003usx.1_5'Flank|AP4M1_uc011kjg.1_Missense_Mutation_p.I59T|AP4M1_uc010lgl.1_Missense_Mutation_p.I59T|AP4M1_uc003utc.3_Missense_Mutation_p.I66T|AP4M1_uc010lgm.2_5'UTR|AP4M1_uc003utd.2_Missense_Mutation_p.I59T|AP4M1_uc011kjh.1_Missense_Mutation_p.I11T|AP4M1_uc003ute.3_5'UTR|AP4M1_uc003utf.3_5'UTR	NM_004722	NP_004713	O00189	AP4M1_HUMAN	adaptor-related protein complex 4, mu 1 subunit	59					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|coated pit|Golgi trans cisterna	transporter activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TTCATTCACATCAGACACAGC	0.403000													59	246					0	0	0.014410	0	0
LAMB1	3912	broad.mit.edu	37	7	107572755	107572755	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:107572755T>C	uc003vew.2	-	28	4591	c.4256A>G	c.(4255-4257)GAC>GGC	p.D1419G	LAMB1_uc003vev.2_Missense_Mutation_p.D1443G|LAMB1_uc003veu.2_5'Flank	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	1419	Domain alpha.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTCTCCTTCGTCAGTTCTGCA	0.572000													4	186					0	0	0.014758	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117364734	117364734	+	Silent	SNP	T	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:117364734T>A	uc003vjf.2	-	19	4406	c.4314A>T	c.(4312-4314)ATA>ATT	p.I1438I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1438										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		AACTGGAAACTATGGATAAAG	0.438000													15	50					0	0	0.028581	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117396642	117396642	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:117396642G>A	uc003vjf.2	-	12	3407	c.3315C>T	c.(3313-3315)ATC>ATT	p.I1105I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1105										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		TCTGGAGAGGGATCATGGAGG	0.498000													9	161					0	0	0.004482	0	0
ARF5	381	broad.mit.edu	37	7	127229193	127229193	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:127229193A>G	uc003vmb.1	+	2	160	c.124A>G	c.(124-126)ATT>GTT	p.I42V	ARF5_uc010llb.1_Missense_Mutation_p.I42V|FSCN3_uc003vmc.1_5'Flank	NM_001662	NP_001653	P84085	ARF5_HUMAN	ADP-ribosylation factor 5	42					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	Golgi apparatus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1						GTTGGGGGAGATTGTCACCAC	0.632000											OREG0018287	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	83	116					0	0	0.014410	0	0
KRBA1	84626	broad.mit.edu	37	7	149422542	149422542	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:149422542G>C	uc003wfz.2	+	10	1662	c.1263G>C	c.(1261-1263)CAG>CAC	p.Q421H	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Missense_Mutation_p.Q89H	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	421										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTAGGTCTCAGAAGCCTGAAC	0.597000													3	82					0	0	0.004672	0	0
DOCK5	80005	broad.mit.edu	37	8	25190182	25190182	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr8:25190182T>C	uc003xeg.2	+	20	2202	c.2065T>C	c.(2065-2067)TAT>CAT	p.Y689H	DOCK5_uc010luf.1_RNA|DOCK5_uc003xeh.1_Missense_Mutation_p.Y403H|DOCK5_uc003xei.2_Missense_Mutation_p.Y259H|DOCK5_uc003xej.2_RNA	NM_024940	NP_079216	Q9H7D0	DOCK5_HUMAN	dedicator of cytokinesis 5	689						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)	3		all_cancers(63;0.0361)|Ovarian(32;0.000711)|all_epithelial(46;0.0153)|Hepatocellular(4;0.115)|Prostate(55;0.13)|Breast(100;0.143)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0267)|Epithelial(17;1.07e-11)|Colorectal(74;0.0276)|COAD - Colon adenocarcinoma(73;0.0828)		CAGTGAAACCTATGACTTCCT	0.259000													2	8					0	0	0.004672	0	0
ABRA	137735	broad.mit.edu	37	8	107782408	107782408	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr8:107782408C>A	uc003ymm.3	-	1	65	c.11G>T	c.(10-12)GGC>GTC	p.G4V		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	4					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			TTCCTTTTCGCCCGGAGCCAT	0.597000													50	131					2.23044e-30	2.61705e-30	0.014410	1	0
MRPL13	28998	broad.mit.edu	37	8	121455496	121455496	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr8:121455496G>A	uc003ypa.2	-	2	393	c.80C>T	c.(79-81)CCA>CTA	p.P27L	MTBP_uc003ypc.1_5'Flank|MRPL13_uc010mdf.2_RNA|MTBP_uc003ypb.1_5'Flank|MTBP_uc011lie.1_5'Flank	NM_014078	NP_054797	Q9BYD1	RM13_HUMAN	mitochondrial ribosomal protein L13	27					translation	mitochondrial large ribosomal subunit	protein binding|structural constituent of ribosome			central_nervous_system(1)	1	Lung NSC(37;1.69e-07)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TTTGCCAGGTGGCTGCATTTT	0.373000													8	25					0	0	0.006214	0	0
CYHR1	50626	broad.mit.edu	37	8	145690192	145690192	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr8:145690192C>G	uc003zcv.2	-	1	227	c.93G>C	c.(91-93)GAG>GAC	p.E31D	CYHR1_uc003zcw.2_Missense_Mutation_p.E31D|CYHR1_uc003zcx.2_Missense_Mutation_p.E31D|CYHR1_uc003zcy.2_Missense_Mutation_p.E31D|KIFC2_uc003zcz.2_5'Flank	NM_138496	NP_612505	Q6ZMK1	CYHR1_HUMAN	cysteine/histidine-rich 1 isoform 1	31						perinuclear region of cytoplasm	zinc ion binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GTGTACTCACCTCGGCTGTGC	0.627000													17	60					0	0	0.018920	0	0
TNFSF8	944	broad.mit.edu	37	9	117666220	117666220	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr9:117666220A>C	uc004bji.1	-	4	883	c.696T>G	c.(694-696)AAT>AAG	p.N232K		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	232	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						TTCAGTCTGAATTACTGTATA	0.408000													20	31					0	0	0.014323	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070111	141070111	+	Silent	SNP	T	C	C	rs139643347	by1000genomes	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr9:141070111T>C	uc004com.2	+	3	270	c.9T>C	c.(7-9)TCT>TCC	p.S3S	TUBBP5_uc010ncq.2_Silent_p.S117S					RecName: Full=Putative tubulin beta-4q chain;												0						CCATGGACTCTGTGCGCTCGG	0.697000													9	189					0	0	0.006122	0	0
AJAP1	55966	broad.mit.edu	37	1	4832585	4832585	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:4832585G>A	uc001alm.1	+	4	1544	c.1163G>A	c.(1162-1164)CGA>CAA	p.R388Q	AJAP1_uc001aln.2_Missense_Mutation_p.R388Q	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	388	Targeting signals.|Cytoplasmic (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		AATGGAAACCGGTAAGCTCGG	0.592000													3	72					0	0	0.009096	0	0
LRIG2	9860	broad.mit.edu	37	1	113616165	113616165	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:113616165C>A	uc001edf.1	+	1	335	c.137C>A	c.(136-138)CCC>CAC	p.P46H	LRIG2_uc009wgn.1_5'UTR|uc001ede.1_5'Flank	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	46	LRRNT.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TGCCCCGCGCCCTGCTCCTGC	0.652000											OREG0013684	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	48	204					1.98717e-13	2.31066e-13	0.014410	1	0
ATP1A1	476	broad.mit.edu	37	1	116941400	116941400	+	Missense_Mutation	SNP	G	C	C	rs11540954		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:116941400G>C	uc001ege.2	+	16	2621	c.2282G>C	c.(2281-2283)GGA>GCA	p.G761A	ATP1A1_uc010owv.1_Missense_Mutation_p.G730A|ATP1A1_uc010oww.1_Missense_Mutation_p.G761A|ATP1A1_uc010owx.1_Missense_Mutation_p.G730A|C1orf203_uc009whb.2_Intron|ATP1A1_uc001egh.2_5'Flank	NM_000701	NP_000692	P05023	AT1A1_HUMAN	Na+/K+ -ATPase alpha 1 subunit isoform a	761	Cytoplasmic (Potential).				ATP biosynthetic process	melanosome|sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;1.28e-06)|all_epithelial(167;3.48e-07)|all_lung(203;2.64e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0164)|LUSC - Lung squamous cell carcinoma(189;0.0548)|Colorectal(144;0.0825)|COAD - Colon adenocarcinoma(174;0.127)|all cancers(265;0.24)	Acetyldigitoxin(DB00511)|Almitrine(DB01430)|Aluminium(DB01370)|Bepridil(DB01244)|Bretylium(DB01158)|Captopril(DB01197)|Deslanoside(DB01078)|Diazoxide(DB01119)|Digitoxin(DB01396)|Digoxin(DB00390)|Esomeprazole(DB00736)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Ouabain(DB01092)|Pantoprazole(DB00213)|Trichlormethiazide(DB01021)	ATTGTGACTGGAGTAGAGGAA	0.438000													50	108					0	0	0.014410	0	0
ATP1B1	481	broad.mit.edu	37	1	169096584	169096584	+	RNA	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:169096584T>C	uc001gfs.1	+	4		c.626T>C			uc010plp.1_5'Flank			P05026	AT1B1_HUMAN	Synthetic construct DNA, clone: pF1KB8186, Homo sapiens ATP1B1 gene for ATPase, Na+/K+ transporting, beta 1 polypeptide, without stop codon, in Flexi system.						ATP biosynthetic process|blood coagulation|leukocyte migration	sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity			ovary(1)	1	all_hematologic(923;0.208)					AACTTATGGCTACAAAGAGGG	0.388000													49	95					0	0	0.014410	0	0
GOLT1A	127845	broad.mit.edu	37	1	204183026	204183026	+	Silent	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:204183026G>T	uc001has.1	-	1	195	c.9C>A	c.(7-9)TCC>TCA	p.S3S	GOLT1A_uc001hat.1_Silent_p.S3S	NM_198447	NP_940849	Q6ZVE7	GOT1A_HUMAN	golgi transport 1 homolog A	3	Cytoplasmic (Potential).				protein transport|vesicle-mediated transport	Golgi membrane|integral to membrane					0	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.244)			ATTCGGTGATGGAGATCATGC	0.642000													7	31					3.09899e-07	3.44332e-07	0.004482	1	0
FAM188A	80013	broad.mit.edu	37	10	15879212	15879212	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr10:15879212T>A	uc001iod.1	-	6	788	c.567A>T	c.(565-567)TTA>TTT	p.L189F	FAM188A_uc001ioe.1_Missense_Mutation_p.L16F|FAM188A_uc001iof.1_Missense_Mutation_p.L189F	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	189					apoptosis	nucleus	calcium ion binding			ovary(1)	1						CCTTTGTCAGTAATACAGAAT	0.353000													76	173					0	0	0.014410	0	0
TNKS2	80351	broad.mit.edu	37	10	93593686	93593686	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr10:93593686T>C	uc001khp.2	+	12	1649	c.1352T>C	c.(1351-1353)CTA>CCA	p.L451P		NM_025235	NP_079511	Q9H2K2	TNKS2_HUMAN	tankyrase, TRF1-interacting ankyrin-related	451	ANK 9.				positive regulation of canonical Wnt receptor signaling pathway|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein polyubiquitination|Wnt receptor signaling pathway	Golgi membrane|microsome|nuclear envelope|pericentriolar material|perinuclear region of cytoplasm	NAD+ ADP-ribosyltransferase activity|protein binding			kidney(3)|skin(3)|ovary(1)|lung(1)	8		Colorectal(252;0.162)				ACCTGCCGCCTACTCCTGAGC	0.413000													73	150					0	0	0.014410	0	0
ITPRIP	85450	broad.mit.edu	37	10	106075425	106075425	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr10:106075425C>T	uc001kye.2	-	2	458	c.385G>A	c.(385-387)GCC>ACC	p.A129T	ITPRIP_uc001kyf.2_Missense_Mutation_p.A129T|ITPRIP_uc001kyg.2_Missense_Mutation_p.A129T	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	129						plasma membrane					0						TGCAAGGGGGCGCCCCCCAGC	0.692000													65	81					0	0	0.014410	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955994	18955994	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr11:18955994A>T	uc001mpg.2	-	1	556	c.338T>A	c.(337-339)CTG>CAG	p.L113Q		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	113	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CACGGCACTCAGAAAGCTCAG	0.542000													5	124					0	0	0.021553	0	0
OR4C11	219429	broad.mit.edu	37	11	55371692	55371692	+	Missense_Mutation	SNP	A	T	T	rs151111921	byFrequency	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr11:55371692A>T	uc010rii.1	-	1	158	c.158T>A	c.(157-159)CTA>CAA	p.L53Q		NM_001004700	NP_001004700	Q6IEV9	OR4CB_HUMAN	olfactory receptor, family 4, subfamily C,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGGCTTCCTAGTGTCCGGCT	0.398000													75	150					0	0	0.014410	0	0
ABCG4	64137	broad.mit.edu	37	11	119027678	119027678	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr11:119027678G>T	uc001pvs.2	+	9	1358	c.1022G>T	c.(1021-1023)AGC>ATC	p.S341I	ABCG4_uc009zar.2_Missense_Mutation_p.S341I	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	341	Cytoplasmic (Potential).				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		AAGAAGAGCAGCCCTGAGAAG	0.607000													62	125					7.59065e-32	9.03648e-32	0.014410	1	0
TXNRD1	7296	broad.mit.edu	37	12	104705164	104705164	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr12:104705164G>A	uc010swk.1	+	5	533	c.511G>A	c.(511-513)GGC>AGC	p.G171S	TXNRD1_uc010swl.1_Missense_Mutation_p.G21S|TXNRD1_uc010swm.1_Missense_Mutation_p.G73S|TXNRD1_uc010swn.1_Missense_Mutation_p.G21S|TXNRD1_uc010swo.1_Missense_Mutation_p.G21S|TXNRD1_uc010swp.1_Intron|TXNRD1_uc010swq.1_Missense_Mutation_p.G71S|TXNRD1_uc001tku.2_RNA|TXNRD1_uc009zun.2_Missense_Mutation_p.G87S|TXNRD1_uc001tko.1_RNA|TXNRD1_uc001tkp.1_RNA|TXNRD1_uc001tkv.1_RNA	NM_001093771	NP_001087240	Q16881	TRXR1_HUMAN	thioredoxin reductase 1 isoform 3	171					cell redox homeostasis|cellular lipid metabolic process|electron transport chain|nucleobase, nucleoside and nucleotide interconversion|signal transduction|transport	cytosol|nucleolus	electron carrier activity|flavin adenine dinucleotide binding|NADP binding|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity				0						CATTGGAGGTGGCTCAGGAGG	0.468000													3	59					0	0	0.014758	0	0
WDR66	144406	broad.mit.edu	37	12	122413567	122413567	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr12:122413567T>C	uc009zxk.2	+	19	3124	c.2982T>C	c.(2980-2982)ATT>ATC	p.I994I		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	994							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		TGAGAGCAATTGGCTTTTACC	0.438000													46	82					0	0	0.013114	0	0
FRMD6	122786	broad.mit.edu	37	14	52182105	52182105	+	Silent	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr14:52182105G>T	uc001wzd.2	+	10	1197	c.912G>T	c.(910-912)ACG>ACT	p.T304T	FRMD6_uc001wzb.2_Silent_p.T296T|FRMD6_uc001wzc.2_Silent_p.T296T|FRMD6_uc001wze.2_Silent_p.T227T|FRMD6_uc001wzf.2_5'UTR|FRMD6_uc001wzg.2_5'Flank	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	304	FERM.					cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					TATACTACACGGGGTGCCCCA	0.507000													13	126					1.61879e-10	1.86068e-10	0.013537	1	0
RDH12	145226	broad.mit.edu	37	14	68191259	68191259	+	Silent	SNP	C	T	T	rs140371232		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr14:68191259C>T	uc001xjz.3	+	4	462	c.138C>T	c.(136-138)GGC>GGT	p.G46G		NM_152443	NP_689656	Q96NR8	RDH12_HUMAN	retinol dehydrogenase 12	46	NADP (By similarity).				photoreceptor cell maintenance|response to stimulus|retinol metabolic process	intracellular	binding|retinol dehydrogenase activity			ovary(1)	1				all cancers(60;0.000704)|OV - Ovarian serous cystadenocarcinoma(108;0.00161)|BRCA - Breast invasive adenocarcinoma(234;0.00953)	Vitamin A(DB00162)	TGATCACTGGCGCCAACACGG	0.542000													5	153					0	0	0.021553	0	0
JAG2	3714	broad.mit.edu	37	14	105622266	105622266	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr14:105622266T>C	uc001yqg.2	-	4	940	c.536A>G	c.(535-537)AAG>AGG	p.K179R	JAG2_uc001yqh.2_Missense_Mutation_p.K179R	NM_002226	NP_002217	Q9Y219	JAG2_HUMAN	jagged 2 isoform a precursor	179	Extracellular (Potential).				auditory receptor cell fate commitment|cell communication|cell cycle|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation|spermatogenesis|thymic T cell selection	integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding			lung(3)|breast(2)	5		all_cancers(154;0.0336)|all_epithelial(191;0.0729)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00989)|all cancers(16;0.0114)|Epithelial(46;0.0272)	Epithelial(152;0.047)|OV - Ovarian serous cystadenocarcinoma(161;0.148)|all cancers(159;0.208)		GTGCAGGCTCTTCCAGCGGTC	0.632000													10	33					0	0	0.013537	0	0
TMC3	342125	broad.mit.edu	37	15	81648105	81648105	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr15:81648105G>A	uc002bgo.1	-	9	896	c.896C>T	c.(895-897)GCT>GTT	p.A299V	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Missense_Mutation_p.A299V	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	299	Extracellular (Potential).					integral to membrane				ovary(1)|liver(1)	2						TTCCAATATAGCTTCCTTTAA	0.284000													30	64					0	0	0.010818	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100657190	100657190	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr15:100657190C>T	uc002bvv.1	-	13	1829	c.1750G>A	c.(1750-1752)GGT>AGT	p.G584S	ADAMTS17_uc002bvx.1_Missense_Mutation_p.G341S	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	584	TSP type-1 1.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		ACACTGGCACCCGGGCAGTGT	0.632000													16	24					0	0	0.028581	0	0
IFT140	9742	broad.mit.edu	37	16	1608090	1608090	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:1608090G>T	uc002cmb.2	-	19	2607	c.2245C>A	c.(2245-2247)CAC>AAC	p.H749N	IFT140_uc002clz.2_Missense_Mutation_p.H400N	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	749										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TGAGGGATGTGGTGGCACCCA	0.552000													134	355					8.08879e-62	9.74553e-62	0.014410	1	0
HCFC1R1	54985	broad.mit.edu	37	16	3073346	3073346	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:3073346G>C	uc002csx.1	-	4	302	c.169C>G	c.(169-171)CAG>GAG	p.Q57E	HCFC1R1_uc002csy.1_Missense_Mutation_p.Q57E|HCFC1R1_uc002csz.1_Missense_Mutation_p.Q38E|THOC6_uc002ctb.2_5'Flank|THOC6_uc002ctd.2_5'Flank|THOC6_uc002ctc.2_5'Flank|THOC6_uc002cta.2_5'Flank	NM_001002018	NP_001002018	Q9NWW0	HPIP_HUMAN	host cell factor C1 regulator 1 (XPO1 dependant)	57						cytoplasm|nucleus					0						GACAGAAACTGCTTGCGCAGA	0.592000													7	231					0	0	0.004482	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254000													6	63					0	0	0.004482	0	0
RBBP6	5930	broad.mit.edu	37	16	24551952	24551952	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:24551952C>G	uc002dmh.2	+	1	1045	c.5C>G	c.(4-6)TCC>TGC	p.S2C	RBBP6_uc010vcb.1_Intron|RBBP6_uc002dmg.2_Missense_Mutation_p.S2C|RBBP6_uc002dmi.2_Missense_Mutation_p.S2C|RBBP6_uc010bxr.2_Missense_Mutation_p.S2C	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	2					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		GGCACCATGTCCTGTGTGCAT	0.408000													6	191					0	0	0.021553	0	0
KIAA0664	23277	broad.mit.edu	37	17	2604434	2604434	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:2604434C>T	uc002fuy.1	-	7	997	c.911G>A	c.(910-912)AGG>AAG	p.R304K	KIAA0664_uc002fux.1_Missense_Mutation_p.R236K	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	304							binding			breast(2)	2						AAGGCACTACCTTTTCTTCTG	0.602000													33	29					0	0	0.015359	0	0
ANKFY1	51479	broad.mit.edu	37	17	4084580	4084580	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:4084580T>C	uc002fxq.1	-	16	2247	c.2209A>G	c.(2209-2211)AAC>GAC	p.N737D	ANKFY1_uc002fxn.2_Missense_Mutation_p.N779D|ANKFY1_uc002fxo.2_Missense_Mutation_p.N738D|ANKFY1_uc002fxp.2_Missense_Mutation_p.N736D|ANKFY1_uc010ckp.2_Missense_Mutation_p.N679D	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	737	ANK 12.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						GTGGGCTCGTTGTTTTCATCA	0.522000													6	185					0	0	0.001984	0	0
ASGR1	432	broad.mit.edu	37	17	7081872	7081872	+	Missense_Mutation	SNP	T	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:7081872T>G	uc002ges.3	-	2	421	c.11A>C	c.(10-12)GAG>GCG	p.E4A	ASGR1_uc010clx.1_5'Flank	NM_001671	NP_001662	P07306	ASGR1_HUMAN	asialoglycoprotein receptor 1	4	Cytoplasmic (Probable).				receptor-mediated endocytosis	integral to plasma membrane	asialoglycoprotein receptor activity|metal ion binding|sugar binding			breast(1)|central_nervous_system(1)	2						GTCTTGATACTCCTTGGTCAT	0.378000													47	56					0	0	0.011902	0	0
PFAS	5198	broad.mit.edu	37	17	8170542	8170542	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:8170542C>T	uc002gkr.2	+	24	3305	c.3164C>T	c.(3163-3165)CCC>CTC	p.P1055L	PFAS_uc010vuv.1_Missense_Mutation_p.P631L|PFAS_uc002gks.2_Missense_Mutation_p.P134L	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	1055					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCCTCCGTGCCCCGTGAGCCT	0.677000													12	26					0	0	0.010729	0	0
MAP3K14	9020	broad.mit.edu	37	17	43364549	43364549	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:43364549C>T	uc002iiw.1	-	4	617	c.508G>A	c.(508-510)GAG>AAG	p.E170K	MAP3K14_uc010daj.1_5'Flank|MAP3K14_uc002iiv.1_5'UTR	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	170					cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						CTCTCCTGCTCAGGGGTCCTG	0.617000													19	60					0	0	0.007413	0	0
ACE	1636	broad.mit.edu	37	17	61562641	61562641	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:61562641T>C	uc002jau.1	+	13	1988	c.1966T>C	c.(1966-1968)TAT>CAT	p.Y656H	ACE_uc010ddu.1_Missense_Mutation_p.Y473H|ACE_uc002jav.1_Missense_Mutation_p.Y82H|ACE_uc010ddv.1_5'UTR|ACE_uc010wpj.1_Missense_Mutation_p.Y82H|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_5'UTR	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	656	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TGTGGAGGAATATGACCGGAC	0.552000													45	47					0	0	0.013114	0	0
VPS4B	9525	broad.mit.edu	37	18	61058289	61058289	+	Silent	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr18:61058289T>C	uc002lix.2	-	11	1514	c.1254A>G	c.(1252-1254)CTA>CTG	p.L418L		NM_004869	NP_004860	O75351	VPS4B_HUMAN	vacuolar protein sorting factor 4B	418					cell cycle|cell division|cellular membrane organization|endosome to lysosome transport via multivesicular body sorting pathway|intracellular cholesterol transport|protein transport|response to lipid	cytosol|early endosome|late endosome membrane|lysosome|nucleus|vacuolar membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding			ovary(1)	1						TTGTGTTAGATAGTGACCGCA	0.348000													16	103					0	0	0.028581	0	0
DAZAP1	26528	broad.mit.edu	37	19	1428875	1428875	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:1428875A>G	uc002lsn.2	+	8	770	c.581A>G	c.(580-582)AAG>AGG	p.K194R	DAZAP1_uc002lsm.2_Missense_Mutation_p.K194R|DAZAP1_uc002lso.2_Missense_Mutation_p.K193R|DAZAP1_uc002lsl.1_Missense_Mutation_p.K194R	NM_018959	NP_061832	Q96EP5	DAZP1_HUMAN	DAZ associated protein 1 isoform b	194					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleotide binding|RNA binding			breast(1)	1		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGGACAGCAAGAGCCAAGCG	0.657000													18	50					0	0	0.014323	0	0
EEF2	1938	broad.mit.edu	37	19	3979985	3979985	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:3979985C>T	uc002lze.2	-	10	1509	c.1426G>A	c.(1426-1428)GAC>AAC	p.D476N		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	476						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGAACTGGTCCACGCCCACG	0.592000													17	47					0	0	0.010504	0	0
EIF3G	8666	broad.mit.edu	37	19	10230530	10230530	+	Silent	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:10230530A>G	uc002mnd.2	-	1	70	c.6T>C	c.(4-6)CCT>CCC	p.P2P	EIF3G_uc010dxa.2_Silent_p.P2P|EIF3G_uc010xlb.1_Silent_p.P2P	NM_003755	NP_003746	O75821	EIF3G_HUMAN	eukaryotic translation initiation factor 3,	2						cytosol|eukaryotic translation initiation factor 3 complex|nucleus|perinuclear region of cytoplasm	nucleotide binding|protein binding|translation initiation factor activity				0			OV - Ovarian serous cystadenocarcinoma(20;3.53e-09)|Epithelial(33;4.91e-06)|all cancers(31;1.1e-05)			AGTCTCCAGTAGGCATCGCAA	0.642000											OREG0025231	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	61					0	0	0.016522	0	0
ZNF627	199692	broad.mit.edu	37	19	11728624	11728624	+	Missense_Mutation	SNP	G	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:11728624G>T	uc002msk.2	+	4	1514	c.1306G>T	c.(1306-1308)GTA>TTA	p.V436L	ZNF627_uc010dyf.2_Missense_Mutation_p.V326L	NM_145295	NP_660338	Q7L945	ZN627_HUMAN	zinc finger protein 627	436	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TTACTTTCGAGTACATGAAAA	0.423000													36	102					1.836e-18	2.16e-18	0.017118	1	0
NXNL1	115861	broad.mit.edu	37	19	17571478	17571478	+	Silent	SNP	T	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:17571478T>G	uc002ngs.2	-	1	248	c.201A>C	c.(199-201)GTA>GTC	p.V67V		NM_138454	NP_612463	Q96CM4	NXNL1_HUMAN	nucleoredoxin-like 1	67	Thioredoxin.				cell redox homeostasis	nuclear outer membrane					0						CCGCCCGCAGTACATAGAACT	0.582000													4	137					0	0	0.009096	0	0
BCKDHA	593	broad.mit.edu	37	19	41928188	41928188	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:41928188C>G	uc002oqq.2	+	6	795	c.766C>G	c.(766-768)CTT>GTT	p.L256V	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Missense_Mutation_p.L290V|BCKDHA_uc002oqp.1_Missense_Mutation_p.L148V|BCKDHA_uc002oqr.2_Missense_Mutation_p.L256V|BCKDHA_uc010xvz.1_Missense_Mutation_p.L234V	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	256					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						CGCTGCCACACTTGAGTGCCC	0.612000													26	97					0	0	0.019004	0	0
GRHL1	29841	broad.mit.edu	37	2	10101557	10101557	+	Missense_Mutation	SNP	G	A	A	rs140278187		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr2:10101557G>A	uc002raa.2	+	4	832	c.661G>A	c.(661-663)GTT>ATT	p.V221I	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Silent_p.A57A|GRHL1_uc010yjb.1_Missense_Mutation_p.V70I	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	221					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		CAAGGAAGGCGTTCAGGAGGT	0.463000													47	108					0	0	0.014410	0	0
TMEM37	140738	broad.mit.edu	37	2	120194829	120194829	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr2:120194829T>C	uc002tly.2	+	2	420	c.386T>C	c.(385-387)ATC>ACC	p.I129T		NM_183240	NP_899063	Q8WXS4	CCGL_HUMAN	transmembrane protein 37	129						integral to membrane	calcium channel activity|voltage-gated ion channel activity			breast(1)	1						ATGGGTTCCATCCTCCTCCTG	0.567000													104	291					0	0	0.014410	0	0
NEB	4703	broad.mit.edu	37	2	152484285	152484285	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr2:152484285C>A	uc010fnx.2	-	65	9357	c.9166G>T	c.(9166-9168)GAT>TAT	p.D3056Y		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3056	Nebulin 83.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TTGGGGTCATCTTCAATGTTC	0.453000													7	471					2.0095e-06	2.18424e-06	0.001984	1	0
KCNH7	90134	broad.mit.edu	37	2	163241347	163241347	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr2:163241347A>G	uc002uch.1	-	13	3025	c.2813T>C	c.(2812-2814)ATC>ACC	p.I938T		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	938	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	AATGGAGGAGATGAAAGATGA	0.408000													117	273					0	0	0.014410	0	0
SLC5A3	6526	broad.mit.edu	37	21	35467607	35467607	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr21:35467607G>A	uc002yto.2	+	2	622	c.110G>A	c.(109-111)AGT>AAT	p.S37N	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	37	Extracellular (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						AGCACCGTGAGTGGATACTTC	0.488000													89	142					0	0	0.014410	0	0
SUSD2	56241	broad.mit.edu	37	22	24581140	24581140	+	Silent	SNP	C	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr22:24581140C>A	uc002zzn.1	+	6	905	c.861C>A	c.(859-861)GCC>GCA	p.A287A		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	287	AMOP.|Extracellular (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						ACCCTGTGGCCTGGGCACGAA	0.662000													18	43					1.33834e-09	1.50375e-09	0.007413	1	0
TTLL1	25809	broad.mit.edu	37	22	43442517	43442517	+	Silent	SNP	C	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr22:43442517C>G	uc003bdi.2	-	10	1282	c.1041G>C	c.(1039-1041)CTG>CTC	p.L347L	TTLL1_uc010gzh.2_Silent_p.L318L|TTLL1_uc003bdj.2_Silent_p.L233L|TTLL1_uc003bdh.2_Silent_p.L309L	NM_012263	NP_036395	O95922	TTLL1_HUMAN	tubulin tyrosine ligase-like family, member 1	347	TTL.				protein polyglutamylation	cytoplasm|microtubule	ATP binding|tubulin-glutamic acid ligase activity|tubulin-tyrosine ligase activity			skin(1)	1		Ovarian(80;0.0694)		BRCA - Breast invasive adenocarcinoma(115;0.00461)		TGTCATTAATCAGGTTGTACT	0.512000													11	253					0	0	0.013537	0	0
GRM2	2912	broad.mit.edu	37	3	51746862	51746862	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr3:51746862C>T	uc010hlv.2	+	3	1063	c.824C>T	c.(823-825)GCC>GTC	p.A275V	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	275	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	TCTGAGGATGCCCGGGAGCTG	0.677000													4	94					0	0	0.009096	0	0
ITGB5	3693	broad.mit.edu	37	3	124515613	124515614	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr3:124515613_124515614CC>AT	uc003eho.2	-	10	1611_1612	c.1314_1315GG>AT	c.(1312-1317)ACGGAG>ACATAG	p.E439*	ITGB5_uc010hrx.2_RNA	NM_002213	NP_002204	P18084	ITB5_HUMAN	integrin, beta 5 precursor	439	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|muscle contraction	integrin complex	receptor activity			skin(2)	2				GBM - Glioblastoma multiforme(114;0.163)		AACACATGCTCCGTGTGTCTGC	0.609000													19	55					0	0	0.004672	0	0
SDHAP2	727956	broad.mit.edu	37	3	195400799	195400799	+	Missense_Mutation	SNP	G	A	A	rs7635172	by1000genomes	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr3:195400799G>A	uc003fuw.2	+	9	1289	c.95G>A	c.(94-96)TGT>TAT	p.C32Y	SDHAP2_uc011btb.1_Silent_p.L179L|SDHAP2_uc011btc.1_RNA|SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CAAACTCGCTGTTGGACCTGG	0.597000													4	80					0	0	0.004482	0	0
PCYT1A	5130	broad.mit.edu	37	3	195974373	195974373	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr3:195974373G>A	uc003fwg.2	-	6	524	c.351C>T	c.(349-351)CTC>CTT	p.L117L	PCYT1A_uc003fwh.2_Silent_p.L117L	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	117	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	AGTTGTGTGTGAGCTCATCAC	0.527000													53	149					0	0	0.014410	0	0
LRRC33	375387	broad.mit.edu	37	3	196387840	196387840	+	Silent	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr3:196387840C>T	uc003fwv.2	+	3	1430	c.1326C>T	c.(1324-1326)CCC>CCT	p.P442P		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	442	Extracellular (Potential).|LRR 15.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CACTTTGTCCCCTGCCAGCTG	0.592000													164	223					0	0	0.014410	0	0
CLOCK	9575	broad.mit.edu	37	4	56301654	56301654	+	Silent	SNP	A	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:56301654A>T	uc003haz.1	-	24	3395	c.2469T>A	c.(2467-2469)TCT>TCA	p.S823S	CLOCK_uc003hba.1_Silent_p.S823S|CLOCK_uc010igu.1_RNA	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	823	Poly-Gln.				circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			GCTGTTGCTGAGACTGATGTT	0.527000													50	113					0	0	0.014410	0	0
UGT2B7	7364	broad.mit.edu	37	4	69978199	69978199	+	Silent	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:69978199A>G	uc003heg.3	+	6	1381	c.1335A>G	c.(1333-1335)TTA>TTG	p.L445L	UGT2B7_uc010ihq.2_3'UTR	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	445					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TTATGAAATTATCAAGAATTC	0.284000													59	167					0	0	0.014410	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86921691	86921691	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:86921691A>G	uc003hpk.2	+	10	2512	c.2063A>G	c.(2062-2064)GAT>GGT	p.D688G	ARHGAP24_uc003hpl.2_Missense_Mutation_p.D593G|ARHGAP24_uc010ikf.2_Missense_Mutation_p.D603G|ARHGAP24_uc003hpm.2_Missense_Mutation_p.D595G	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	688	Potential.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		GATGAACTGGATCAGGAGAGG	0.448000													46	63					0	0	0.013114	0	0
BMPR1B	658	broad.mit.edu	37	4	96025660	96025660	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr4:96025660G>A	uc003htm.3	+	4	359	c.85G>A	c.(85-87)GTC>ATC	p.V29I	BMPR1B_uc010ilb.2_Missense_Mutation_p.V29I|BMPR1B_uc003htn.3_Missense_Mutation_p.V29I	NM_001203	NP_001194	O00238	BMR1B_HUMAN	bone morphogenetic protein receptor, type IB	29	Extracellular (Potential).				BMP signaling pathway|cartilage condensation|eye development|limb morphogenesis|ovarian cumulus expansion|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	receptor complex	ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta receptor activity			lung(4)|skin(2)|stomach(1)|breast(1)	8		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.51e-07)		CCGTCCAAAGGTCTTGCGTTG	0.423000													47	100					0	0	0.014410	0	0
SEMA5A	9037	broad.mit.edu	37	5	9226981	9226981	+	Silent	SNP	C	T	T	rs141767878		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr5:9226981C>T	uc003jek.2	-	7	1144	c.432G>A	c.(430-432)TCG>TCA	p.S144S		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	144	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GAAGCCATACCGAGCGGTTGG	0.438000													5	89					0	0	0.021553	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128956361	128956361	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr5:128956361A>G	uc003kvb.1	+	9	1511	c.1511A>G	c.(1510-1512)CAT>CGT	p.H504R	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	504	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GATGGTCTTCATATCATGTCT	0.373000													10	241					0	0	0.008291	0	0
GABRG2	2566	broad.mit.edu	37	5	161576298	161576298	+	Missense_Mutation	SNP	A	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr5:161576298A>T	uc003lyz.3	+	8	1465	c.1107A>T	c.(1105-1107)AAA>AAT	p.K369N	GABRG2_uc010jjc.2_Missense_Mutation_p.K409N|GABRG2_uc003lyy.3_Missense_Mutation_p.K369N|GABRG2_uc011dej.1_Missense_Mutation_p.K274N	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	369	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GCAAGGACAAAGATAAAAAGA	0.373000													51	102					0	0	0.014410	0	0
VARS	7407	broad.mit.edu	37	6	31753451	31753451	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr6:31753451G>A	uc003nxe.2	-	9	1583	c.1160C>T	c.(1159-1161)GCC>GTC	p.A387V	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	387					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CACCTGGGTGGCAATACCTGC	0.632000													4	122					0	0	0.009096	0	0
DST	667	broad.mit.edu	37	6	56499603	56499603	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr6:56499603A>C	uc003pdf.2	-	24	3264	c.3236T>G	c.(3235-3237)ATT>AGT	p.I1079S	DST_uc003pcz.3_Missense_Mutation_p.I901S|DST_uc011dxj.1_Missense_Mutation_p.I930S|DST_uc011dxk.1_Missense_Mutation_p.I941S|DST_uc003pcy.3_Missense_Mutation_p.I575S|DST_uc003pdb.2_Missense_Mutation_p.I575S|DST_uc003pdc.3_Missense_Mutation_p.I575S|DST_uc003pdd.3_Missense_Mutation_p.I575S	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	901	SH3.				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AAGTACCTCAATTTGTCTGTA	0.358000													97	200					0	0	0.014410	0	0
FAM135A	57579	broad.mit.edu	37	6	71234676	71234676	+	Missense_Mutation	SNP	T	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr6:71234676T>A	uc003pfj.2	+	13	2022	c.1889T>A	c.(1888-1890)ATG>AAG	p.M630K	FAM135A_uc003pfi.2_Missense_Mutation_p.M434K|FAM135A_uc003pfh.2_Missense_Mutation_p.M417K|FAM135A_uc003pfl.2_Missense_Mutation_p.M297K|FAM135A_uc003pfn.2_Missense_Mutation_p.M60K|FAM135A_uc003pfo.1_Missense_Mutation_p.M1K	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	630										central_nervous_system(1)	1						ATTACACAAATGGAACACAAT	0.393000													47	69					0	0	0.014410	0	0
AP4M1	9179	broad.mit.edu	37	7	99700326	99700326	+	Missense_Mutation	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:99700326T>C	uc003utb.3	+	3	384	c.176T>C	c.(175-177)ATC>ACC	p.I59T	MCM7_uc003usv.1_5'Flank|MCM7_uc003usw.1_5'Flank|MCM7_uc003usx.1_5'Flank|AP4M1_uc011kjg.1_Missense_Mutation_p.I59T|AP4M1_uc010lgl.1_Missense_Mutation_p.I59T|AP4M1_uc003utc.3_Missense_Mutation_p.I66T|AP4M1_uc010lgm.2_5'UTR|AP4M1_uc003utd.2_Missense_Mutation_p.I59T|AP4M1_uc011kjh.1_Missense_Mutation_p.I11T|AP4M1_uc003ute.3_5'UTR|AP4M1_uc003utf.3_5'UTR	NM_004722	NP_004713	O00189	AP4M1_HUMAN	adaptor-related protein complex 4, mu 1 subunit	59					intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|coated pit|Golgi trans cisterna	transporter activity				0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TTCATTCACATCAGACACAGC	0.403000													47	175					0	0	0.014410	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117364734	117364734	+	Silent	SNP	T	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:117364734T>A	uc003vjf.2	-	19	4406	c.4314A>T	c.(4312-4314)ATA>ATT	p.I1438I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1438										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		AACTGGAAACTATGGATAAAG	0.438000													46	113					0	0	0.014410	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117396642	117396642	+	Silent	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:117396642G>A	uc003vjf.2	-	12	3407	c.3315C>T	c.(3313-3315)ATC>ATT	p.I1105I		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1105										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		TCTGGAGAGGGATCATGGAGG	0.498000													7	194					0	0	0.004482	0	0
ARF5	381	broad.mit.edu	37	7	127229193	127229193	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:127229193A>G	uc003vmb.1	+	2	160	c.124A>G	c.(124-126)ATT>GTT	p.I42V	ARF5_uc010llb.1_Missense_Mutation_p.I42V|FSCN3_uc003vmc.1_5'Flank	NM_001662	NP_001653	P84085	ARF5_HUMAN	ADP-ribosylation factor 5	42					protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	Golgi apparatus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1						GTTGGGGGAGATTGTCACCAC	0.632000											OREG0018287	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	64					0	0	0.019004	0	0
KRBA1	84626	broad.mit.edu	37	7	149422542	149422542	+	Missense_Mutation	SNP	G	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr7:149422542G>C	uc003wfz.2	+	10	1662	c.1263G>C	c.(1261-1263)CAG>CAC	p.Q421H	KRBA1_uc010lpj.2_RNA|KRBA1_uc003wga.2_RNA|KRBA1_uc003wgb.2_Missense_Mutation_p.Q89H	NM_032534	NP_115923	A5PL33	KRBA1_HUMAN	KRAB A domain containing 1	421										ovary(1)|central_nervous_system(1)	2	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTAGGTCTCAGAAGCCTGAAC	0.597000													3	37					0	0	0.009096	0	0
KIAA1429	25962	broad.mit.edu	37	8	95507107	95507107	+	Missense_Mutation	SNP	A	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr8:95507107A>G	uc003ygo.1	-	20	4635	c.4622T>C	c.(4621-4623)ATA>ACA	p.I1541T	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1541					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			ATCTGTATCTATCTCTTCAGC	0.318000													6	311					0	0	0.021553	0	0
ABRA	137735	broad.mit.edu	37	8	107782408	107782408	+	Missense_Mutation	SNP	C	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr8:107782408C>A	uc003ymm.3	-	1	65	c.11G>T	c.(10-12)GGC>GTC	p.G4V		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	4					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			TTCCTTTTCGCCCGGAGCCAT	0.597000													21	77					3.62473e-10	4.11901e-10	0.012319	1	0
MRPL13	28998	broad.mit.edu	37	8	121455496	121455496	+	Missense_Mutation	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr8:121455496G>A	uc003ypa.2	-	2	393	c.80C>T	c.(79-81)CCA>CTA	p.P27L	MTBP_uc003ypc.1_5'Flank|MRPL13_uc010mdf.2_RNA|MTBP_uc003ypb.1_5'Flank|MTBP_uc011lie.1_5'Flank	NM_014078	NP_054797	Q9BYD1	RM13_HUMAN	mitochondrial ribosomal protein L13	27					translation	mitochondrial large ribosomal subunit	protein binding|structural constituent of ribosome			central_nervous_system(1)	1	Lung NSC(37;1.69e-07)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TTTGCCAGGTGGCTGCATTTT	0.373000													55	115					0	0	0.014410	0	0
CYHR1	50626	broad.mit.edu	37	8	145690192	145690192	+	Missense_Mutation	SNP	C	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr8:145690192C>G	uc003zcv.2	-	1	227	c.93G>C	c.(91-93)GAG>GAC	p.E31D	CYHR1_uc003zcw.2_Missense_Mutation_p.E31D|CYHR1_uc003zcx.2_Missense_Mutation_p.E31D|CYHR1_uc003zcy.2_Missense_Mutation_p.E31D|KIFC2_uc003zcz.2_5'Flank	NM_138496	NP_612505	Q6ZMK1	CYHR1_HUMAN	cysteine/histidine-rich 1 isoform 1	31						perinuclear region of cytoplasm	zinc ion binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GTGTACTCACCTCGGCTGTGC	0.627000													12	26					0	0	0.004990	0	0
FREM1	158326	broad.mit.edu	37	9	14824065	14824065	+	Silent	SNP	T	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr9:14824065T>G	uc003zlm.2	-	12	2717	c.2127A>C	c.(2125-2127)GTA>GTC	p.V709V	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	709	CSPG 4.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GATTCTTAACTACTTTTGGTA	0.408000													5	17					0	0	0.014758	0	0
TNFSF8	944	broad.mit.edu	37	9	117666220	117666220	+	Missense_Mutation	SNP	A	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr9:117666220A>C	uc004bji.1	-	4	883	c.696T>G	c.(694-696)AAT>AAG	p.N232K		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	232	Extracellular (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						TTCAGTCTGAATTACTGTATA	0.408000													72	165					0	0	0.014410	0	0
TOR1A	1861	broad.mit.edu	37	9	132584984	132584984	+	Missense_Mutation	SNP	C	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr9:132584984C>T	uc004byl.2	-	2	397	c.320G>A	c.(319-321)GGC>GAC	p.G107D	TOR1A_uc004bym.2_RNA|TOR1A_uc004byn.2_Missense_Mutation_p.G107D	NM_000113	NP_000104	O14656	TOR1A_HUMAN	torsin A precursor	107	ATP.				chaperone mediated protein folding requiring cofactor|response to unfolded protein	endoplasmic reticulum lumen|nuclear membrane	ATP binding|serine-type endopeptidase activity|unfolded protein binding			central_nervous_system(1)	1		Ovarian(14;0.00556)				GAAATTTTTGCCGGTGCCTGT	0.468000													6	352					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	MT	4037	4037	+	RNA	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chrM:4037G>A	uc004cos.3	+	2		c.2330G>A			uc011mfh.1_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP47.																		AATCTTCCTAGGAACAACATA	0.428000													3	72					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	MT	8060	8060	+	RNA	SNP	G	A	A			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chrM:8060G>A	uc004cou.3	+	1		c.475G>A			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		CATCACAAGACGTCTTGCACT	0.478000													7	59					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	MT	8279	8279	+	RNA	SNP	T	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chrM:8279T>C	uc004cou.3	+	1		c.694T>C			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		AGCACCCCCTCTACCCCCTCT	0.413000													6	38					0	0	0.004482	0	0
UBXN11	91544	broad.mit.edu	37	1	26608820	26608843	+	In_Frame_Del	DEL	GGGACTGGGGCCGGGACCGGGACC	-	-	rs61775084	by1000genomes	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:26608820_26608843delGGGACTGGGGCCGGGACCGGGACC	uc001blw.2	-	16	1783_1806	c.1510_1533delGGTCCCGGTCCCGGCCCCAGTCCC	c.(1510-1533)GGTCCCGGTCCCGGCCCCAGTCCCdel	p.GPGPGPSP504del	UBXN11_uc001blz.1_Splice_Site_p.I469_splice|UBXN11_uc001blv.2_In_Frame_Del_p.GPGPGPSP466del|UBXN11_uc001bly.2_In_Frame_Del_p.GPGPGPSP384del|UBXN11_uc001blx.2_In_Frame_Del_p.GPGPGPSP262del|UBXN11_uc001bma.2_In_Frame_Del_p.GPGPGPSP471del	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	504_511	Pro-rich.					cytoplasm|cytoskeleton				ovary(1)	1						gtccaggacagggactggggccgggaccgggaccgggactgggg	0.312													12	148	---	---	---	---					
SELE	6401	broad.mit.edu	37	1	169698749	169698749	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:169698749delT	uc001ggm.3	-	6	938	c.781delA	c.(781-783)AGCfs	p.S261fs	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	261	Sushi 2.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CATGGGAAGCTTCCAGGGTTT	0.448													20	53	---	---	---	---					
CEP350	9857	broad.mit.edu	37	1	179965912	179965912	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:179965912delA	uc001gnt.2	+	6	1003	c.620delA	c.(619-621)CAAfs	p.Q207fs	CEP350_uc001gnr.1_Frame_Shift_Del_p.Q181fs|CEP350_uc009wxl.2_Frame_Shift_Del_p.Q206fs|CEP350_uc001gnu.2_Frame_Shift_Del_p.Q41fs	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	207						centrosome|nucleus|spindle				ovary(4)	4						GATGCATTGCAAAATTCTGAA	0.378													10	32	---	---	---	---					
ELF3	1999	broad.mit.edu	37	1	201981806	201981814	+	In_Frame_Del	DEL	GGTCAGCAA	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:201981806_201981814delGGTCAGCAA	uc001gxg.3	+	4	3709_3717	c.517_525delGGTCAGCAA	c.(517-525)GGTCAGCAAdel	p.GQQ173del	ELF3_uc001gxi.3_In_Frame_Del_p.GQQ173del|ELF3_uc001gxh.3_In_Frame_Del_p.GQQ173del	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	173_175					epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						GCTGGACGACGGTCAGCAAGCCAGCCCCT	0.660													29	148	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11545949	11545951	+	In_Frame_Del	DEL	TGC	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr12:11545949_11545951delTGC	uc010shk.1	-	3	1096_1098	c.1061_1063delGCA	c.(1060-1065)AGCAAG>AAG	p.S354del		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTTCGGGACTTGCTGCCTCCTTG	0.601													8	2703	---	---	---	---					
FAM71D	161142	broad.mit.edu	37	14	67671485	67671486	+	Frame_Shift_Ins	INS	-	T	T	rs55981040	byFrequency	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr14:67671485_67671486insT	uc001xja.1	+	5	845_846	c.591_592insT	c.(589-594)ACAGACfs	p.T197fs	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	197_198										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		CGAATAGCACAGACATCACAGG	0.505													8	62	---	---	---	---					
ANGEL1	23357	broad.mit.edu	37	14	77274402	77274411	+	Frame_Shift_Del	DEL	GAGTGAACTG	-	-	rs138394702	byFrequency	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr14:77274402_77274411delGAGTGAACTG	uc001xsv.2	-	3	843_852	c.730_739delCAGTTCACTC	c.(730-741)CAGTTCACTCTGfs	p.Q244fs	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	244_247										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TAAGACATCAGAGTGAACTGGAACTGAGGG	0.505													12	87	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106877817	106877819	+	RNA	DEL	ACT	-	-	rs113800876		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr14:106877817_106877819delACT	uc010tyt.1	-	277		c.11280_11282delAGT			uc010tyu.1_In_Frame_Del_p.S45del					Parts of antibodies, mostly variable regions.												0						CCCAGTAGTAACTACTACTGCTG	0.596													30	107	---	---	---	---					
PIPOX	51268	broad.mit.edu	37	17	27370356	27370357	+	Frame_Shift_Ins	INS	-	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:27370356_27370357insG	uc002hdr.1	+	1	439_440	c.113_114insG	c.(112-114)CAGfs	p.Q38fs		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	38	FAD (Potential).				tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	CTGCTGGAGCAGGTACTGTGTC	0.584													64	112	---	---	---	---					
TBX21	30009	broad.mit.edu	37	17	45822284	45822285	+	Frame_Shift_Ins	INS	-	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:45822284_45822285insG	uc002ilv.1	+	6	1371_1372	c.1160_1161insG	c.(1159-1161)CTGfs	p.L387fs		NM_013351	NP_037483	Q9UL17	TBX21_HUMAN	T-box 21	387					lymphocyte migration|multicellular organismal development|positive regulation of transcription, DNA-dependent|response to virus	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						GCTTACTGGCTGGGGGCCCCCC	0.614													8	526	---	---	---	---					
TGIF1	7050	broad.mit.edu	37	18	3452215	3452215	+	Frame_Shift_Del	DEL	G	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr18:3452215delG	uc002klz.2	+	1	625	c.238delG	c.(238-240)GCCfs	p.A80fs	TGIF1_uc002klu.2_Intron|TGIF1_uc002klv.2_Intron|TGIF1_uc002klx.2_Intron|TGIF1_uc002klw.2_Intron|TGIF1_uc010dkm.1_Intron|TGIF1_uc002kly.2_Intron|TGIF1_uc002kma.2_Intron|TGIF1_uc002kmb.2_5'Flank	NM_170695	NP_733796	Q15583	TGIF1_HUMAN	TG-interacting factor isoform a	80					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Esophageal squamous(4;0.0859)	Colorectal(8;0.0104)				GTCCTCCTGCGCCCCCCCTCC	0.756													7	79	---	---	---	---					
FBN3	84467	broad.mit.edu	37	19	8182139	8182139	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:8182139delT	uc002mjf.2	-	27	3521	c.3500delA	c.(3499-3501)GACfs	p.D1167fs		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1167	EGF-like 16; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACAGTGCACGTCACACCCACC	0.468													30	74	---	---	---	---					
SIRT2	22933	broad.mit.edu	37	19	39380603	39380604	+	Splice_Site	INS	-	A	A			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:39380603_39380604insA	uc002ojt.1	-	6	469	c.269_splice	c.e6-1	p.S90_splice	SIRT2_uc010egh.1_Splice_Site_p.S53_splice|SIRT2_uc010egi.1_Splice_Site_p.S53_splice|SIRT2_uc002ojs.1_Splice_Site_p.S70_splice|SIRT2_uc002oju.1_Splice_Site_p.S53_splice|SIRT2_uc010egj.1_Splice_Site_p.S53_splice|SIRT2_uc002ojv.1_Intron	NM_012237	NP_036369	Q8IXJ6	SIRT2_HUMAN	sirtuin 2 isoform 1						cell division|chromatin silencing at rDNA|chromatin silencing at telomere|mitosis|negative regulation of striated muscle tissue development|protein ADP-ribosylation|regulation of exit from mitosis|regulation of phosphorylation|response to redox state	chromatin silencing complex|cytoplasm|microtubule	histone acetyltransferase binding|histone deacetylase binding|NAD+ binding|NAD-dependent histone deacetylase activity|transcription factor binding|tubulin deacetylase activity|ubiquitin binding|zinc ion binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00125)|LUSC - Lung squamous cell carcinoma(53;0.00191)			TGCCTGCGGCTAGGAAAGGGGG	0.584													10	197	---	---	---	---					
BAIAP2L2	80115	broad.mit.edu	37	22	38483189	38483190	+	In_Frame_Ins	INS	-	GGTCATGGA	GGTCATGGA	rs71803583		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr22:38483189_38483190insGGTCATGGA	uc003auw.2	-	11	1344_1345	c.1200_1201insTCCATGACC	c.(1198-1203)insTCCATGACC	p.403_404insSMT	BAIAP2L2_uc003auv.2_5'Flank	NM_025045	NP_079321	Q6UXY1	BI2L2_HUMAN	BAI1-associated protein 2-like 2	403_404					filopodium assembly|signal transduction		cytoskeletal adaptor activity|SH3 domain binding			pancreas(1)	1	Melanoma(58;0.045)					gaggtcatggaggtcatggggg	0.450													20	85	---	---	---	---					
EP300	2033	broad.mit.edu	37	22	41574679	41574681	+	In_Frame_Del	DEL	CCC	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr22:41574679_41574681delCCC	uc003azl.3	+	31	7359_7361	c.6964_6966delCCC	c.(6964-6966)CCCdel	p.P2323del		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	2323					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding	p.P2323P(1)		haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						ACAGTCCCAGCCCCCCCACTCCA	0.616			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				59	222	---	---	---	---					
FANCD2	2177	broad.mit.edu	37	3	10088407	10088410	+	Splice_Site	DEL	AGTA	-	-	rs146316187		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr3:10088407_10088410delAGTA	uc003buw.2	+	15	1356	c.1278_splice	c.e15+1	p.L426_splice	FANCD2_uc003bux.1_Splice_Site_p.L426_splice|FANCD2_uc003buy.1_Splice_Site_p.L426_splice|FANCD2_uc010hcw.1_5'Flank	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform						DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		TTCATTACTTAGTAAGTGTCAGAG	0.235			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				16	119	---	---	---	---					
CRIPAK	285464	broad.mit.edu	37	4	1389147	1389148	+	Frame_Shift_Del	DEL	AT	-	-	rs35123539	byFrequency	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr4:1389147_1389148delAT	uc003gdf.2	+	1	3808_3809	c.848_849delAT	c.(847-849)CATfs	p.H283fs		NM_175918	NP_787114	Q8N1N5	CRPAK_HUMAN	cysteine-rich PAK1 inhibitor	283	8.				ER-nucleus signaling pathway|negative regulation of protein kinase activity|regulation of cytoskeleton organization|response to estrogen stimulus	endoplasmic reticulum|nucleus|plasma membrane	protein binding				0			OV - Ovarian serous cystadenocarcinoma(23;0.0106)			GCCTGCTCACATGTGCCGATGT	0.683													10	624	---	---	---	---					
POLR2J	5439	broad.mit.edu	37	7	102119254	102119256	+	Splice_Site	DEL	CTT	-	-	rs141678884		TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr7:102119254_102119256delCTT	uc003uzp.1	-	1	127	c.53_splice	c.e1+1	p.K18_splice		NM_006234	NP_006225	P52435	RPB11_HUMAN	DNA directed RNA polymerase II polypeptide J						mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|LRR domain binding|protein dimerization activity	p.?(1)		pancreas(1)	1						GCGTCACTTACTTCTTCTCGCCC	0.685											OREG0018232	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	92	---	---	---	---					
SELE	6401	broad.mit.edu	37	1	169698749	169698749	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:169698749delT	uc001ggm.3	-	6	938	c.781delA	c.(781-783)AGCfs	p.S261fs	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	261	Sushi 2.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CATGGGAAGCTTCCAGGGTTT	0.448													97	154	---	---	---	---					
CEP350	9857	broad.mit.edu	37	1	179965912	179965912	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:179965912delA	uc001gnt.2	+	6	1003	c.620delA	c.(619-621)CAAfs	p.Q207fs	CEP350_uc001gnr.1_Frame_Shift_Del_p.Q181fs|CEP350_uc009wxl.2_Frame_Shift_Del_p.Q206fs|CEP350_uc001gnu.2_Frame_Shift_Del_p.Q41fs	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	207						centrosome|nucleus|spindle				ovary(4)	4						GATGCATTGCAAAATTCTGAA	0.378													12	45	---	---	---	---					
ELF3	1999	broad.mit.edu	37	1	201981806	201981814	+	In_Frame_Del	DEL	GGTCAGCAA	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr1:201981806_201981814delGGTCAGCAA	uc001gxg.3	+	4	3709_3717	c.517_525delGGTCAGCAA	c.(517-525)GGTCAGCAAdel	p.GQQ173del	ELF3_uc001gxi.3_In_Frame_Del_p.GQQ173del|ELF3_uc001gxh.3_In_Frame_Del_p.GQQ173del	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	173_175					epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						GCTGGACGACGGTCAGCAAGCCAGCCCCT	0.660													9	65	---	---	---	---					
ANGEL1	23357	broad.mit.edu	37	14	77274402	77274411	+	Frame_Shift_Del	DEL	GAGTGAACTG	-	-	rs138394702	byFrequency	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr14:77274402_77274411delGAGTGAACTG	uc001xsv.2	-	3	843_852	c.730_739delCAGTTCACTC	c.(730-741)CAGTTCACTCTGfs	p.Q244fs	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	244_247										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TAAGACATCAGAGTGAACTGGAACTGAGGG	0.505													26	96	---	---	---	---					
PIPOX	51268	broad.mit.edu	37	17	27370356	27370357	+	Frame_Shift_Ins	INS	-	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr17:27370356_27370357insG	uc002hdr.1	+	1	439_440	c.113_114insG	c.(112-114)CAGfs	p.Q38fs		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	38	FAD (Potential).				tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	CTGCTGGAGCAGGTACTGTGTC	0.584													78	77	---	---	---	---					
FBN3	84467	broad.mit.edu	37	19	8182139	8182139	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr19:8182139delT	uc002mjf.2	-	27	3521	c.3500delA	c.(3499-3501)GACfs	p.D1167fs		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1167	EGF-like 16; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACAGTGCACGTCACACCCACC	0.468													14	48	---	---	---	---					
EP300	2033	broad.mit.edu	37	22	41574679	41574681	+	In_Frame_Del	DEL	CCC	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chr22:41574679_41574681delCCC	uc003azl.3	+	31	7359_7361	c.6964_6966delCCC	c.(6964-6966)CCCdel	p.P2323del		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	2323					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding	p.P2323P(1)		haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						ACAGTCCCAGCCCCCCCACTCCA	0.616			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				38	108	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	11866	11867	+	RNA	INS	-	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	g.chrM:11866_11867insC	uc004cov.3	+	1		c.1289_1290insC			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		AACCTCGCCTTACCCCCCACTA	0.455													7	77	---	---	---	---					
SELE	6401	broad.mit.edu	37	1	169698749	169698749	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:169698749delT	uc001ggm.3	-	6	938	c.781delA	c.(781-783)AGCfs	p.S261fs	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	261	Sushi 2.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CATGGGAAGCTTCCAGGGTTT	0.448													20	53	---	---	---	---					
CEP350	9857	broad.mit.edu	37	1	179965912	179965912	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:179965912delA	uc001gnt.2	+	6	1003	c.620delA	c.(619-621)CAAfs	p.Q207fs	CEP350_uc001gnr.1_Frame_Shift_Del_p.Q181fs|CEP350_uc009wxl.2_Frame_Shift_Del_p.Q206fs|CEP350_uc001gnu.2_Frame_Shift_Del_p.Q41fs	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	207						centrosome|nucleus|spindle				ovary(4)	4						GATGCATTGCAAAATTCTGAA	0.378													10	32	---	---	---	---					
ELF3	1999	broad.mit.edu	37	1	201981806	201981814	+	In_Frame_Del	DEL	GGTCAGCAA	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:201981806_201981814delGGTCAGCAA	uc001gxg.3	+	4	3709_3717	c.517_525delGGTCAGCAA	c.(517-525)GGTCAGCAAdel	p.GQQ173del	ELF3_uc001gxi.3_In_Frame_Del_p.GQQ173del|ELF3_uc001gxh.3_In_Frame_Del_p.GQQ173del	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	173_175					epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						GCTGGACGACGGTCAGCAAGCCAGCCCCT	0.660													29	148	---	---	---	---					
ANGEL1	23357	broad.mit.edu	37	14	77274402	77274411	+	Frame_Shift_Del	DEL	GAGTGAACTG	-	-	rs138394702	byFrequency	TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr14:77274402_77274411delGAGTGAACTG	uc001xsv.2	-	3	843_852	c.730_739delCAGTTCACTC	c.(730-741)CAGTTCACTCTGfs	p.Q244fs	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	244_247										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TAAGACATCAGAGTGAACTGGAACTGAGGG	0.505													12	87	---	---	---	---					
PIPOX	51268	broad.mit.edu	37	17	27370356	27370357	+	Frame_Shift_Ins	INS	-	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:27370356_27370357insG	uc002hdr.1	+	1	439_440	c.113_114insG	c.(112-114)CAGfs	p.Q38fs		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	38	FAD (Potential).				tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	CTGCTGGAGCAGGTACTGTGTC	0.584													64	112	---	---	---	---					
CD300A	11314	broad.mit.edu	37	17	72469708	72469709	+	Frame_Shift_Ins	INS	-	G	G			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:72469708_72469709insG	uc002jkv.2	+	2	395_396	c.74_75insG	c.(73-75)GCGfs	p.A25fs	CD300A_uc002jkw.2_Intron|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Intron	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	25	Extracellular (Potential).|Ig-like V-type.				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						AGGACCGTGGCGGGCCCCGTGG	0.569													10	691	---	---	---	---					
TGIF1	7050	broad.mit.edu	37	18	3452215	3452215	+	Frame_Shift_Del	DEL	G	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr18:3452215delG	uc002klz.2	+	1	625	c.238delG	c.(238-240)GCCfs	p.A80fs	TGIF1_uc002klu.2_Intron|TGIF1_uc002klv.2_Intron|TGIF1_uc002klx.2_Intron|TGIF1_uc002klw.2_Intron|TGIF1_uc010dkm.1_Intron|TGIF1_uc002kly.2_Intron|TGIF1_uc002kma.2_Intron|TGIF1_uc002kmb.2_5'Flank	NM_170695	NP_733796	Q15583	TGIF1_HUMAN	TG-interacting factor isoform a	80					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Esophageal squamous(4;0.0859)	Colorectal(8;0.0104)				GTCCTCCTGCGCCCCCCCTCC	0.756													7	79	---	---	---	---					
FBN3	84467	broad.mit.edu	37	19	8182139	8182139	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:8182139delT	uc002mjf.2	-	27	3521	c.3500delA	c.(3499-3501)GACfs	p.D1167fs		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1167	EGF-like 16; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACAGTGCACGTCACACCCACC	0.468													30	74	---	---	---	---					
EP300	2033	broad.mit.edu	37	22	41574679	41574681	+	In_Frame_Del	DEL	CCC	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr22:41574679_41574681delCCC	uc003azl.3	+	31	7359_7361	c.6964_6966delCCC	c.(6964-6966)CCCdel	p.P2323del		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	2323					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding	p.P2323P(1)		haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						ACAGTCCCAGCCCCCCCACTCCA	0.616			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				59	222	---	---	---	---					
PPARGC1B	133522	broad.mit.edu	37	5	149216400	149216402	+	In_Frame_Del	DEL	CAG	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr5:149216400_149216402delCAG	uc003lrc.2	+	8	2424_2426	c.2382_2384delCAG	c.(2380-2385)GACAGC>GAC	p.S799del	PPARGC1B_uc003lrb.1_In_Frame_Del_p.S799del|PPARGC1B_uc003lrd.2_In_Frame_Del_p.S760del|PPARGC1B_uc003lrf.2_In_Frame_Del_p.S778del|PPARGC1B_uc003lre.1_In_Frame_Del_p.S778del	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	799	Glu-rich.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TCTTTGAAGACAGCAGCAGCAGC	0.453													9	409	---	---	---	---					
GRM1	2911	broad.mit.edu	37	6	146350671	146350672	+	Frame_Shift_Ins	INS	-	T	T			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr6:146350671_146350672insT	uc010khw.1	+	2	488_489	c.18_19insT	c.(16-21)TTGTTTfs	p.L6fs	GRM1_uc010khu.1_Frame_Shift_Ins_p.L6fs|GRM1_uc010khv.1_Frame_Shift_Ins_p.L6fs|GRM1_uc003qll.2_Frame_Shift_Ins_p.L6fs|GRM1_uc011edz.1_Frame_Shift_Ins_p.L6fs|GRM1_uc011eea.1_Frame_Shift_Ins_p.L6fs	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	6_7					synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GGCTCCTTTTGTTTTTTTTCCC	0.644													12	625	---	---	---	---					
ABL1	25	broad.mit.edu	37	9	133759490	133759492	+	In_Frame_Del	DEL	AAG	-	-			TCGA-B3-4103-01A-01D-1252-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	d1343345-8cf7-43dc-8ccc-d366af6902c3	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr9:133759490_133759492delAAG	uc004bzw.2	+	11	1816_1818	c.1813_1815delAAG	c.(1813-1815)AAGdel	p.K609del	ABL1_uc004bzv.2_In_Frame_Del_p.K628del	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	609	Nuclear localization signal 1 (Potential).|Poly-Lys.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	CGCCTTGATCAAGAAGAAGAAGA	0.616			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								8	459	---	---	---	---					
SELE	6401	broad.mit.edu	37	1	169698749	169698749	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:169698749delT	uc001ggm.3	-	6	938	c.781delA	c.(781-783)AGCfs	p.S261fs	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	261	Sushi 2.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CATGGGAAGCTTCCAGGGTTT	0.448													97	154	---	---	---	---					
CEP350	9857	broad.mit.edu	37	1	179965912	179965912	+	Frame_Shift_Del	DEL	A	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:179965912delA	uc001gnt.2	+	6	1003	c.620delA	c.(619-621)CAAfs	p.Q207fs	CEP350_uc001gnr.1_Frame_Shift_Del_p.Q181fs|CEP350_uc009wxl.2_Frame_Shift_Del_p.Q206fs|CEP350_uc001gnu.2_Frame_Shift_Del_p.Q41fs	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	207						centrosome|nucleus|spindle				ovary(4)	4						GATGCATTGCAAAATTCTGAA	0.378													12	45	---	---	---	---					
ELF3	1999	broad.mit.edu	37	1	201981806	201981814	+	In_Frame_Del	DEL	GGTCAGCAA	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr1:201981806_201981814delGGTCAGCAA	uc001gxg.3	+	4	3709_3717	c.517_525delGGTCAGCAA	c.(517-525)GGTCAGCAAdel	p.GQQ173del	ELF3_uc001gxi.3_In_Frame_Del_p.GQQ173del|ELF3_uc001gxh.3_In_Frame_Del_p.GQQ173del	NM_004433	NP_004424	P78545	ELF3_HUMAN	E74-like factor 3 (ets domain transcription	173_175					epidermis development|epithelial cell differentiation|inflammatory response|mammary gland involution|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0						GCTGGACGACGGTCAGCAAGCCAGCCCCT	0.660													9	65	---	---	---	---					
RBM26	64062	broad.mit.edu	37	13	79918806	79918807	+	Frame_Shift_Ins	INS	-	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr13:79918806_79918807insT	uc001vkz.2	-	15	2201_2202	c.2187_2188insA	c.(2185-2190)AAACAGfs	p.K729fs	RBM26_uc001vky.2_Frame_Shift_Ins_p.K700fs|RBM26_uc001vla.2_Frame_Shift_Ins_p.K703fs|RBM26_uc010tia.1_Frame_Shift_Ins_p.K84fs|RBM26_uc001vkx.2_Frame_Shift_Ins_p.K439fs	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	727_728	Potential.				mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		GTACTTACCTGTTTTTTTTTCT	0.332													7	131	---	---	---	---					
ANGEL1	23357	broad.mit.edu	37	14	77274402	77274411	+	Frame_Shift_Del	DEL	GAGTGAACTG	-	-	rs138394702	byFrequency	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr14:77274402_77274411delGAGTGAACTG	uc001xsv.2	-	3	843_852	c.730_739delCAGTTCACTC	c.(730-741)CAGTTCACTCTGfs	p.Q244fs	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	244_247										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		TAAGACATCAGAGTGAACTGGAACTGAGGG	0.505													26	96	---	---	---	---					
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	G	G	rs2981599		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr16:3119304_3119305insG	uc002cto.2	+	6	864_865	c.653_654insG	c.(652-654)GACfs	p.D218fs	IL32_uc002ctk.2_Frame_Shift_Ins_p.D115fs|IL32_uc010uwp.1_Frame_Shift_Ins_p.D152fs|IL32_uc010btb.2_Frame_Shift_Ins_p.D162fs|IL32_uc002ctl.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctm.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctn.2_Frame_Shift_Ins_p.D172fs|IL32_uc002cts.3_Frame_Shift_Ins_p.D172fs|IL32_uc002ctp.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctq.2_Frame_Shift_Ins_p.D218fs|IL32_uc002ctr.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctt.2_Frame_Shift_Ins_p.D172fs|IL32_uc010uwr.1_Frame_Shift_Ins_p.D132fs|IL32_uc002ctu.2_Frame_Shift_Ins_p.D163fs	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						CCACGGGGGGACAAGGAGGAGC	0.574													22	800	---	---	---	---					
PIPOX	51268	broad.mit.edu	37	17	27370356	27370357	+	Frame_Shift_Ins	INS	-	G	G			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr17:27370356_27370357insG	uc002hdr.1	+	1	439_440	c.113_114insG	c.(112-114)CAGfs	p.Q38fs		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	38	FAD (Potential).				tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	CTGCTGGAGCAGGTACTGTGTC	0.584													78	77	---	---	---	---					
FBN3	84467	broad.mit.edu	37	19	8182139	8182139	+	Frame_Shift_Del	DEL	T	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr19:8182139delT	uc002mjf.2	-	27	3521	c.3500delA	c.(3499-3501)GACfs	p.D1167fs		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1167	EGF-like 16; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ACAGTGCACGTCACACCCACC	0.468													14	48	---	---	---	---					
EP300	2033	broad.mit.edu	37	22	41574679	41574681	+	In_Frame_Del	DEL	CCC	-	-			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr22:41574679_41574681delCCC	uc003azl.3	+	31	7359_7361	c.6964_6966delCCC	c.(6964-6966)CCCdel	p.P2323del		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	2323					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding	p.P2323P(1)		haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						ACAGTCCCAGCCCCCCCACTCCA	0.616			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				38	108	---	---	---	---					
PRIM2	5558	broad.mit.edu	37	6	57512916	57512917	+	Splice_Site	INS	-	T	T			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chr6:57512916_57512917insT	uc003pdx.2	+	16	1839	c.1752_splice	c.e16+1			NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2						DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		ttttttttcaattttttttgta	0.000													6	8	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	11866	11867	+	RNA	INS	-	C	C			TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-11A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	62fba643-8f61-4d98-afe1-fbfeca74cdfa	91db34b0-ab14-4cd0-89df-51a96ea4161d	g.chrM:11866_11867insC	uc004cov.3	+	1		c.1289_1290insC			uc004cow.1_5'Flank|uc004cox.3_5'Flank|uc004coy.2_5'Flank					Homo sapiens potential LAG1 interactor mRNA, partial cds.																		AACCTCGCCTTACCCCCCACTA	0.455													7	77	---	---	---	---					
