Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
OR2M1P	388762	broad.mit.edu	37	1	248285883	248285883	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr1:248285883C>A	uc001idy.1	+	1	446	c.446C>A	c.(445-447)TCC>TAC	p.S149Y		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						ATCATTGCTTCCTATGCTGGA	0.428000													35	119					2.09667e-21	2.28483e-21	0.788014	1	0
SEC31B	25956	broad.mit.edu	37	10	102255181	102255181	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr10:102255181C>G	uc001krc.1	-	19	2535	c.2433G>C	c.(2431-2433)GAG>GAC	p.E811D	SEC31B_uc010qpo.1_Missense_Mutation_p.E810D|SEC31B_uc001krd.1_Missense_Mutation_p.E348D|SEC31B_uc001krf.1_Missense_Mutation_p.E348D|SEC31B_uc001kre.1_Missense_Mutation_p.E348D|SEC31B_uc001krg.1_Missense_Mutation_p.E380D	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	811					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		AAGATGATGTCTCTTTAGAGT	0.403000													13	13					0	0	0.500413	0	0
DCLRE1A	9937	broad.mit.edu	37	10	115608965	115608965	+	Silent	SNP	A	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr10:115608965A>G	uc001law.2	-	2	2817	c.1899T>C	c.(1897-1899)CGT>CGC	p.R633R		NM_014881	NP_055696	Q6PJP8	DCR1A_HUMAN	DNA cross-link repair 1A	633					cell division|mitosis	nucleus	hydrolase activity			skin(2)	2				Epithelial(162;0.0157)|all cancers(201;0.0171)		TCTTTTTTTGACGCTGTGACC	0.368000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					77	127					0	0	0.870114	0	0
SLC43A3	29015	broad.mit.edu	37	11	57188512	57188512	+	Missense_Mutation	SNP	C	T	T	rs148055054		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr11:57188512C>T	uc001nkg.2	-	7	874	c.464G>A	c.(463-465)CGT>CAT	p.R155H	PRG2_uc001nke.2_Missense_Mutation_p.R54H|SLC43A3_uc001nkh.2_Missense_Mutation_p.R155H|SLC43A3_uc010rjr.1_Missense_Mutation_p.R168H|SLC43A3_uc009yme.2_Missense_Mutation_p.R155H|SLC43A3_uc001nki.2_Missense_Mutation_p.R155H|SLC43A3_uc009ymf.1_Missense_Mutation_p.R155H|SLC43A3_uc010rjs.1_Missense_Mutation_p.R155H|SLC43A3_uc009ymg.1_Missense_Mutation_p.R168H	NM_014096	NP_054815	Q8NBI5	S43A3_HUMAN	solute carrier family 43, member 3	155					transmembrane transport	integral to membrane				central_nervous_system(1)	1						GATGGTCGAACGGTGTTGGCC	0.299000													33	43					0	0	0.760397	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110454361	110454361	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr11:110454361C>G	uc001pkz.1	-	14	1801	c.1516G>C	c.(1516-1518)GCA>CCA	p.A506P	ARHGAP20_uc001pky.1_Missense_Mutation_p.A483P|ARHGAP20_uc009yyb.1_Missense_Mutation_p.A470P|ARHGAP20_uc001pla.1_Missense_Mutation_p.A470P|ARHGAP20_uc001plb.2_Missense_Mutation_p.A49P	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	506	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		AAATTAAATGCAGTCATCTGA	0.418000													3	4					0	0	0.115264	0	0
ST3GAL4	6484	broad.mit.edu	37	11	126276866	126276866	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr11:126276866G>C	uc001qds.2	+	4	349	c.130G>C	c.(130-132)GAG>CAG	p.E44Q	ST3GAL4_uc001qdt.2_Missense_Mutation_p.E40Q|ST3GAL4_uc009zcc.2_5'UTR|ST3GAL4_uc009zcd.2_Missense_Mutation_p.E33Q|ST3GAL4_uc001qdu.2_Missense_Mutation_p.E40Q|ST3GAL4_uc001qdv.2_Missense_Mutation_p.E44Q|ST3GAL4_uc009zce.2_Missense_Mutation_p.E40Q|ST3GAL4_uc001qdw.2_Missense_Mutation_p.E33Q|ST3GAL4_uc001qdx.1_Missense_Mutation_p.E33Q|ST3GAL4_uc001qdy.2_5'UTR|ST3GAL4_uc001qdz.2_5'Flank	NM_006278	NP_006269	Q11206	SIA4C_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	44	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0739)|all_lung(97;0.0798)|all_neural(223;0.138)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0767)		AGAGAAGAAGGAGCCGTGCCT	0.547000													122	206					0	0	0.870114	0	0
MYBPC1	4604	broad.mit.edu	37	12	102038482	102038482	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr12:102038482A>T	uc001tii.2	+	10	900	c.798A>T	c.(796-798)AAA>AAT	p.K266N	MYBPC1_uc001tif.1_Missense_Mutation_p.K279N|MYBPC1_uc001tig.2_Missense_Mutation_p.K291N|MYBPC1_uc010svq.1_Missense_Mutation_p.K253N|MYBPC1_uc001tih.2_Missense_Mutation_p.K291N|MYBPC1_uc001tij.2_Missense_Mutation_p.K266N|MYBPC1_uc010svr.1_Missense_Mutation_p.K266N|MYBPC1_uc010svs.1_Missense_Mutation_p.K266N|MYBPC1_uc010svt.1_Missense_Mutation_p.K254N|MYBPC1_uc010svu.1_Missense_Mutation_p.K247N|MYBPC1_uc001tik.2_Missense_Mutation_p.K240N	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	266	Ig-like C2-type 2.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						AGGTTGACAAAGGAGGCAGAG	0.368000													14	34					0	0	0.500413	0	0
ACAD10	80724	broad.mit.edu	37	12	112174685	112174685	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr12:112174685T>A	uc001tsq.2	+	12	1791	c.1591T>A	c.(1591-1593)TAT>AAT	p.Y531N	ACAD10_uc001tsp.2_Missense_Mutation_p.Y531N|ACAD10_uc009zvx.2_Missense_Mutation_p.Y562N|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	531							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						TGCAGAGGAGTATTTCAGGAT	0.502000													44	70					0	0	0.853193	0	0
KNTC1	9735	broad.mit.edu	37	12	123105091	123105091	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr12:123105091C>T	uc001ucv.2	+	60	6378	c.6215C>T	c.(6214-6216)CCG>CTG	p.P2072L	KNTC1_uc010taf.1_Missense_Mutation_p.P997L|GPR81_uc001ucw.1_RNA	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	2072					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TTAGAACTTCCGGCTTTTGCA	0.458000													3	45					0	0	0.150653	0	0
EP400	57634	broad.mit.edu	37	12	132551479	132551479	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr12:132551479T>A	uc001ujn.2	+	48	8749	c.8714T>A	c.(8713-8715)ATC>AAC	p.I2905N	EP400_uc001ujl.2_Missense_Mutation_p.I2904N|EP400_uc001ujm.2_Missense_Mutation_p.I2824N|EP400_uc001ujp.2_Missense_Mutation_p.I115N	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2941					histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		GTCGCGGGGATCAGCGTGGCG	0.687000													26	41					0	0	0.760397	0	0
IFT88	8100	broad.mit.edu	37	13	21189985	21189985	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr13:21189985T>G	uc001unh.2	+	16	1589	c.1193T>G	c.(1192-1194)GTA>GGA	p.V398G	IFT88_uc001uni.2_Missense_Mutation_p.V389G|IFT88_uc001unj.2_Missense_Mutation_p.V388G|IFT88_uc010tcq.1_Missense_Mutation_p.V369G|IFT88_uc001unk.2_Missense_Mutation_p.V144G|IFT88_uc001unl.1_Missense_Mutation_p.V16G	NM_175605	NP_783195	Q13099	IFT88_HUMAN	intraflagellar transport 88 homolog isoform 1	398					cilium morphogenesis	centriole|intraflagellar transport particle B|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(29;5.79e-25)|all_epithelial(30;2.57e-20)|all_lung(29;3.13e-16)|Lung SC(185;0.0262)|Ovarian(182;0.0825)|Hepatocellular(188;0.244)		all cancers(112;0.000667)|Epithelial(112;0.00119)|OV - Ovarian serous cystadenocarcinoma(117;0.0141)|Lung(94;0.0183)|LUSC - Lung squamous cell carcinoma(192;0.0528)		ATTGCTCCTGTAATTGAAACA	0.269000													39	96					0	0	0.870114	0	0
IFT88	8100	broad.mit.edu	37	13	21189988	21189988	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr13:21189988T>A	uc001unh.2	+	16	1592	c.1196T>A	c.(1195-1197)ATT>AAT	p.I399N	IFT88_uc001uni.2_Missense_Mutation_p.I390N|IFT88_uc001unj.2_Missense_Mutation_p.I389N|IFT88_uc010tcq.1_Missense_Mutation_p.I370N|IFT88_uc001unk.2_Missense_Mutation_p.I145N|IFT88_uc001unl.1_Missense_Mutation_p.I17N	NM_175605	NP_783195	Q13099	IFT88_HUMAN	intraflagellar transport 88 homolog isoform 1	399					cilium morphogenesis	centriole|intraflagellar transport particle B|microtubule basal body|microtubule-based flagellum	protein binding			ovary(1)	1		all_cancers(29;5.79e-25)|all_epithelial(30;2.57e-20)|all_lung(29;3.13e-16)|Lung SC(185;0.0262)|Ovarian(182;0.0825)|Hepatocellular(188;0.244)		all cancers(112;0.000667)|Epithelial(112;0.00119)|OV - Ovarian serous cystadenocarcinoma(117;0.0141)|Lung(94;0.0183)|LUSC - Lung squamous cell carcinoma(192;0.0528)		GCTCCTGTAATTGAAACATCT	0.269000													37	97					0	0	0.870114	0	0
CLMN	79789	broad.mit.edu	37	14	95669398	95669398	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr14:95669398T>C	uc001yef.2	-	9	2404	c.2288A>G	c.(2287-2289)TAT>TGT	p.Y763C		NM_024734	NP_079010	Q96JQ2	CLMN_HUMAN	calmin	763						integral to membrane	actin binding				0				Epithelial(152;0.193)		GTCTGGCATATAGCCCTCTGG	0.567000													69	108					0	0	0.870114	0	0
AHNAK2	113146	broad.mit.edu	37	14	105416307	105416307	+	Silent	SNP	C	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr14:105416307C>T	uc010axc.1	-	7	5601	c.5481G>A	c.(5479-5481)AAG>AAA	p.K1827K	AHNAK2_uc001ypx.2_Silent_p.K1727K	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1827						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCATCTTGAACTTGGGCATTT	0.612000													19	676					0	0	0.557998	0	0
IGDCC4	57722	broad.mit.edu	37	15	65684591	65684591	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr15:65684591A>C	uc002aou.1	-	11	2213	c.2003T>G	c.(2002-2004)GTG>GGG	p.V668G	IGDCC4_uc002aot.1_Missense_Mutation_p.V256G	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	668	Extracellular (Potential).|Fibronectin type-III 3.					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						CTCAGCCCCCACCTCCCGCCA	0.617000													8	53					0	0	0.681144	0	0
FBXO22	26263	broad.mit.edu	37	15	76196905	76196905	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr15:76196905G>A	uc002bbk.2	+	2	319	c.214G>A	c.(214-216)GGC>AGC	p.G72S	FBXO22_uc002bbj.1_Missense_Mutation_p.G72S|FBXO22_uc002bbl.2_Intron	NM_147188	NP_671717	Q8NEZ5	FBX22_HUMAN	F-box only protein 22 isoform a	72					ubiquitin-dependent protein catabolic process		ubiquitin-protein ligase activity				0						GATCTCCGCAGGCCTGGCGGA	0.602000													59	175					0	0	0.870114	0	0
CREBBP	1387	broad.mit.edu	37	16	3808859	3808859	+	Missense_Mutation	SNP	A	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr16:3808859A>G	uc002cvv.2	-	17	3569	c.3365T>C	c.(3364-3366)ATT>ACT	p.I1122T	CREBBP_uc002cvw.2_Missense_Mutation_p.I1084T	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1122	Bromo.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		ACTTACTGGAATTCCGAGGAG	0.438000			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				13	41					0	0	0.435327	0	0
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552000													3	57					0	0	0.150653	0	0
HERPUD1	9709	broad.mit.edu	37	16	56970652	56970652	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr16:56970652G>T	uc002eke.1	+	4	763	c.354G>T	c.(352-354)GAG>GAT	p.E118D	HERPUD1_uc010vhj.1_Missense_Mutation_p.E179D|HERPUD1_uc002ekf.1_Missense_Mutation_p.E117D|HERPUD1_uc002ekg.1_Missense_Mutation_p.E93D|HERPUD1_uc010cco.1_Missense_Mutation_p.E179D|HERPUD1_uc010ccp.1_Missense_Mutation_p.E178D|HERPUD1_uc002ekh.1_Translation_Start_Site	NM_014685	NP_055500	Q15011	HERP1_HUMAN	homocysteine-inducible, endoplasmic reticulum	118	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0						AGTATCCTGAGGATTCCTCAA	0.443000			T	ERG	prostate								39	31					2.05212e-20	2.20798e-20	0.812448	1	0
SF3B3	23450	broad.mit.edu	37	16	70569300	70569300	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr16:70569300C>T	uc002ezf.2	+	6	1013	c.802C>T	c.(802-804)CGC>TGC	p.R268C	SNORD111_uc002ezg.1_5'Flank	NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	268					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				GCCAGATATCCGCTGTCCAAT	0.413000													5	256					0	0	0.184627	0	0
MARVELD3	91862	broad.mit.edu	37	16	71674415	71674415	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr16:71674415T>A	uc002fau.2	+	3	781	c.718T>A	c.(718-720)TAC>AAC	p.Y240N	PHLPP2_uc002fav.2_Intron|MARVELD3_uc010cge.2_3'UTR	NM_001017967	NP_001017967	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 1	240	MARVEL.|Helical; (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				TGGGAACAACTACTACTCACC	0.572000													69	194					0	0	0.870114	0	0
ZFHX3	463	broad.mit.edu	37	16	72984698	72984698	+	Silent	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr16:72984698G>A	uc002fck.2	-	3	3559	c.2886C>T	c.(2884-2886)GGC>GGT	p.G962G	ZFHX3_uc002fcl.2_Silent_p.G48G	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	962	C2H2-type 6; degenerate.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TCATGTGCAGGCCCAGCATGT	0.607000													46	164					0	0	0.870114	0	0
GHDC	84514	broad.mit.edu	37	17	40344945	40344945	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr17:40344945G>T	uc002hzd.2	-	3	850	c.366C>A	c.(364-366)GAC>GAA	p.D122E	GHDC_uc002hzg.1_Missense_Mutation_p.D122E|GHDC_uc010wgg.1_Intron|GHDC_uc002hze.3_Missense_Mutation_p.D122E|GHDC_uc002hzf.3_Missense_Mutation_p.D122E|GHDC_uc010cxz.2_RNA	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	122						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		CCTCCCCAAGGTCCTGGTTTG	0.607000													202	275					9.50237e-82	1.09149e-81	0.870114	1	0
GHDC	84514	broad.mit.edu	37	17	40344972	40344972	+	Silent	SNP	C	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr17:40344972C>T	uc002hzd.2	-	3	823	c.339G>A	c.(337-339)CAG>CAA	p.Q113Q	GHDC_uc002hzg.1_Silent_p.Q113Q|GHDC_uc010wgg.1_Intron|GHDC_uc002hze.3_Silent_p.Q113Q|GHDC_uc002hzf.3_Silent_p.Q113Q|GHDC_uc010cxz.2_RNA	NM_032484	NP_115873	Q8N2G8	GHDC_HUMAN	LGP1 homolog isoform 1	113						endoplasmic reticulum|nuclear envelope					0		all_cancers(22;0.000229)|Breast(137;0.00104)|all_epithelial(22;0.00304)		BRCA - Breast invasive adenocarcinoma(366;0.124)		GGGGCAGTGGCTGCTCTCCAC	0.592000													243	242					0	0	0.870114	0	0
PLEKHJ1	55111	broad.mit.edu	37	19	2234038	2234038	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:2234038G>T	uc002lvf.1	-	5	424	c.343C>A	c.(343-345)CTC>ATC	p.L115I	SF3A2_uc002lvg.2_5'Flank	NM_018049	NP_060519	Q9NW61	PKHJ1_HUMAN	pleckstrin homology domain containing, family J	115							protein binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TAGAAGATGAGGCTTCTCCGC	0.642000													146	287					8.40228e-78	9.52259e-78	0.870114	1	0
KDM4B	23030	broad.mit.edu	37	19	5131903	5131903	+	Silent	SNP	G	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:5131903G>C	uc002mbq.3	+	13	2017	c.1791G>C	c.(1789-1791)CCG>CCC	p.P597P	KDM4B_uc010xim.1_Silent_p.P631P|KDM4B_uc002mbr.3_Silent_p.P355P	NM_015015	NP_055830	O94953	KDM4B_HUMAN	jumonji domain containing 2B	597					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			lung(1)	1						TTCAGGCACCGTCCACATTTT	0.652000													15	49					0	0	0.539581	0	0
LRRC25	126364	broad.mit.edu	37	19	18507298	18507298	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:18507298G>T	uc002niw.2	-	1	1118	c.476C>A	c.(475-477)CCT>CAT	p.P159H	LRRC25_uc002nix.2_Missense_Mutation_p.P159H	NM_145256	NP_660299	Q8N386	LRC25_HUMAN	leucine rich repeat containing 25 precursor	159	Extracellular (Potential).					integral to membrane					0						GGCCAGGCCAGGGGCGCAGCT	0.642000													5	109					0.00198382	0.00200744	0.248553	1	0
UBA2	10054	broad.mit.edu	37	19	34921484	34921484	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:34921484G>C	uc002nvk.2	+	2	212	c.142G>C	c.(142-144)GAT>CAT	p.D48H	UBA2_uc010xrx.1_Intron|UBA2_uc002nvl.2_5'UTR	NM_005499	NP_005490	Q9UBT2	SAE2_HUMAN	SUMO-1 activating enzyme subunit 2	48		ATP.			protein sumoylation	nucleus	ATP binding|enzyme activator activity|ligase activity|metal ion binding|protein heterodimerization activity|SUMO activating enzyme activity			ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			TTTGTAGATTGATCTGGATAC	0.358000													45	89					0	0	0.864702	0	0
RYR1	6261	broad.mit.edu	37	19	39039030	39039030	+	Silent	SNP	T	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:39039030T>C	uc002oit.2	+	89	12382	c.12252T>C	c.(12250-12252)CGT>CGC	p.R4084R	RYR1_uc002oiu.2_Silent_p.R4079R|RYR1_uc002oiv.1_Silent_p.R993R	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	4084					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CGGATCCCCGTGGCCTCATCT	0.453000													77	166					0	0	0.870114	0	0
FCGBP	8857	broad.mit.edu	37	19	40366038	40366038	+	Silent	SNP	C	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:40366038C>G	uc002omp.3	-	30	14204	c.14196G>C	c.(14194-14196)CCG>CCC	p.P4732P		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4732						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GACAGAAGTCCGGCCGCCTCC	0.647000													44	85					0	0	0.870114	0	0
NUCB1	4924	broad.mit.edu	37	19	49422348	49422348	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:49422348G>A	uc002plb.3	+	9	950	c.878G>A	c.(877-879)CGA>CAA	p.R293Q	NUCB1_uc002pla.2_Missense_Mutation_p.R293Q|NUCB1_uc002plc.2_Missense_Mutation_p.R293Q|NUCB1_uc002pld.2_5'UTR	NM_006184	NP_006175	Q02818	NUCB1_HUMAN	nucleobindin 1 precursor	293	Binds to GNAI2 and GNAI3 (By similarity).|EF-hand 2.					ER-Golgi intermediate compartment|extracellular space|Golgi apparatus|membrane|microtubule cytoskeleton	calcium ion binding|DNA binding				0		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000171)|all cancers(93;0.000333)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0244)		GAGGAGGAGCGACTGCGCATG	0.612000													37	63					0	0	0.819951	0	0
ZNF665	79788	broad.mit.edu	37	19	53668284	53668284	+	Nonsense_Mutation	SNP	T	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:53668284T>A	uc010eqm.1	-	4	1559	c.1459A>T	c.(1459-1461)AAG>TAG	p.K487*		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	422	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		TCATCACACTTGTAAGGTTTC	0.413000													66	138					0	0	0.870114	0	0
LILRB2	10288	broad.mit.edu	37	19	54783677	54783677	+	Silent	SNP	C	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:54783677C>T	uc002qfb.2	-	4	590	c.324G>A	c.(322-324)GAG>GAA	p.E108E	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.E108E|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.E108E|LILRB2_uc010yet.1_5'UTR|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	108	Extracellular (Potential).|Ig-like C2-type 1.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGTCACTGAGCTCAGACCACC	0.602000													98	218					0	0	0.870114	0	0
TMEM214	54867	broad.mit.edu	37	2	27259433	27259433	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr2:27259433T>G	uc002ria.3	+	6	909	c.799T>G	c.(799-801)TTT>GTT	p.F267V	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Missense_Mutation_p.F222V	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	267						integral to membrane	protein binding				0						TCAAGCAGGTTTTGCCAACCT	0.567000													152	377					0	0	0.870114	0	0
CGREF1	10669	broad.mit.edu	37	2	27327221	27327221	+	Missense_Mutation	SNP	G	T	T	rs112618911	byFrequency	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr2:27327221G>T	uc010eys.1	-	2	156	c.14C>A	c.(13-15)ACG>AAG	p.T5K	CGREF1_uc010ylf.1_Intron|CGREF1_uc002rip.1_5'UTR|CGREF1_uc002riq.2_Missense_Mutation_p.T5K|CGREF1_uc010eyr.1_Missense_Mutation_p.T127K|CGREF1_uc002rir.1_Missense_Mutation_p.T5K|CGREF1_uc002ris.2_Missense_Mutation_p.T5K	NM_006569	NP_006560	Q99674	CGRE1_HUMAN	cell growth regulator with EF-hand domain 1	5					cell adhesion|cell cycle arrest|negative regulation of cell proliferation|response to stress	extracellular region	calcium ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CACTGTCATCGTCAAAGGTAA	0.567000													34	88					1.22384e-17	1.30033e-17	0.769981	1	0
CEBPZ	10153	broad.mit.edu	37	2	37454852	37454852	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr2:37454852G>A	uc002rpz.2	-	2	1514	c.1484C>T	c.(1483-1485)CCT>CTT	p.P495L		NM_005760	NP_005751	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein zeta	495					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding			pancreas(1)	1		all_hematologic(82;0.21)				CTGGGAATAAGGGTATGCCCT	0.368000													18	12					0	0	0.557998	0	0
GPR45	11250	broad.mit.edu	37	2	105858582	105858582	+	Silent	SNP	C	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr2:105858582C>G	uc002tco.1	+	1	383	c.267C>G	c.(265-267)CCC>CCG	p.P89P		NM_007227	NP_009158	Q9Y5Y3	GPR45_HUMAN	G protein-coupled receptor 45	89	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3						GCTGCATGCCCTTCACCGCCG	0.627000													202	216					0	0	0.870114	0	0
ALS2	57679	broad.mit.edu	37	2	202626257	202626257	+	Nonsense_Mutation	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr2:202626257G>A	uc002uyo.2	-	4	816	c.460C>T	c.(460-462)CAG>TAG	p.Q154*	ALS2_uc002uyp.3_Nonsense_Mutation_p.Q154*|ALS2_uc002uyq.2_Nonsense_Mutation_p.Q154*|ALS2_uc002uyr.2_Nonsense_Mutation_p.Q154*	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	154	RCC1 2.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						CACGCCAACTGTAAAATCCTG	0.522000													51	59					0	0	0.870114	0	0
ESF1	51575	broad.mit.edu	37	20	13695769	13695769	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr20:13695769A>T	uc002woj.2	-	14	2416	c.2308T>A	c.(2308-2310)TTG>ATG	p.L770M		NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	770	Lys-rich.|Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						AAATTGAACAAGTGGGAAGTG	0.343000													34	45					0	0	0.779181	0	0
PI4KAP1	728233	broad.mit.edu	37	22	20385733	20385733	+	RNA	SNP	A	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr22:20385733A>G	uc010gse.1	-	12		c.1968T>C			PI4KAP1_uc010gsf.1_RNA|PI4KAP1_uc010gsg.1_RNA|PI4KAP1_uc010gsh.1_RNA|PI4KAP1_uc002zsc.3_RNA					Homo sapiens cDNA FLJ11279 fis, clone PLACE1009444, highly similar to PHOSPHATIDYLINOSITOL 4-KINASE ALPHA (EC 2.7.1.67).												0						TACTTCAAGAACTTGATTGTC	0.537000													3	87					0	0	0.115264	0	0
LOC96610	96610	broad.mit.edu	37	22	22661187	22661187	+	RNA	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr22:22661187G>A	uc011aim.1	+	27		c.1613G>A			LOC96610_uc011aiq.1_RNA|LOC96610_uc011aip.1_Intron|LOC96610_uc010gto.2_RNA					Parts of antibodies, mostly variable regions.												0						CCCCCACCCCGTCATGTACAG	0.413000													7	37					0	0	0.248553	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659809	24659809	+	RNA	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr22:24659809G>A	uc002zzs.3	+	7		c.3541G>A			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CCCTATCTGCGCACCCGGAGG	0.612000													6	23					0	0	0.248553	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659813	24659813	+	RNA	SNP	C	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr22:24659813C>T	uc002zzs.3	+	7		c.3545C>T			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						ATCTGCGCACCCGGAGGTGGG	0.607000													6	18					0	0	0.248553	0	0
EP300	2033	broad.mit.edu	37	22	41543893	41543893	+	Silent	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr22:41543893G>A	uc003azl.3	+	12	2579	c.2184G>A	c.(2182-2184)CGG>CGA	p.R728R		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	728					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						TTGTACCCCGGCAAACCCCTC	0.478000			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				4	154					0	0	0.248553	0	0
DTX3L	151636	broad.mit.edu	37	3	122283388	122283388	+	Missense_Mutation	SNP	G	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr3:122283388G>T	uc003efk.2	+	1	204	c.115G>T	c.(115-117)GGG>TGG	p.G39W	DTX3L_uc010hrj.2_Missense_Mutation_p.G39W|PARP9_uc003eff.3_5'Flank|PARP9_uc010hri.2_5'Flank|PARP9_uc011bjs.1_5'Flank|PARP9_uc003efg.2_5'Flank|PARP9_uc003efi.2_5'UTR|PARP9_uc003efh.2_5'UTR|PARP9_uc003efj.2_5'Flank	NM_138287	NP_612144	Q8TDB6	DTX3L_HUMAN	deltex 3-like	39					histone monoubiquitination|response to DNA damage stimulus	cytoplasm|nucleus	histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)	4				GBM - Glioblastoma multiforme(114;0.0459)		CTCGGGCGGCGGGGAGTGCAC	0.672000													52	233					6.56871e-35	7.34659e-35	0.870114	1	0
SLC12A8	84561	broad.mit.edu	37	3	124896700	124896700	+	Missense_Mutation	SNP	C	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr3:124896700C>T	uc003ehv.3	-	5	620	c.509G>A	c.(508-510)GGC>GAC	p.G170D	SLC12A8_uc003ehw.3_Missense_Mutation_p.G199D|SLC12A8_uc010hrz.1_Missense_Mutation_p.G35D	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	170	Helical; (Potential).				potassium ion transport	integral to membrane	symporter activity				0						GAGGTTAATGCCCAGCAAGGC	0.542000													4	170					0	0	0.184627	0	0
MUC4	4585	broad.mit.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr3:195505836G>C	uc011bto.1	-	3	12691	c.12231C>G	c.(12229-12231)CAC>CAG	p.H4077Q	MUC4_uc003fva.2_5'Flank|MUC4_uc003fvb.2_5'Flank|MUC4_uc003fvc.2_5'Flank|MUC4_uc003fvd.2_5'Flank|MUC4_uc003fve.2_5'Flank|MUC4_uc010hzr.2_5'Flank|MUC4_uc011btf.1_Intron|MUC4_uc011btg.1_Intron|MUC4_uc011bth.1_Intron|MUC4_uc011bti.1_Intron|MUC4_uc011btj.1_Intron|MUC4_uc011btk.1_Intron|MUC4_uc011btl.1_Intron|MUC4_uc011btm.1_Intron|MUC4_uc011btn.1_Intron|MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Intron	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GAGGGGTGGCGTGACCTGTGG	0.597000													5	22					0	0	0.217242	0	0
SLAIN2	57606	broad.mit.edu	37	4	48422364	48422364	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr4:48422364G>A	uc003gya.3	+	7	1727	c.1583G>A	c.(1582-1584)GGG>GAG	p.G528E		NM_020846	NP_065897	Q9P270	SLAI2_HUMAN	SLAIN motif family, member 2	528						centrosome					0						AGACCTGCAGGGACAACTGCA	0.557000													4	99					0	0	0.150653	0	0
TBC1D9	23158	broad.mit.edu	37	4	141580761	141580761	+	Nonsense_Mutation	SNP	G	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr4:141580761G>C	uc010ioj.2	-	11	2174	c.1902C>G	c.(1900-1902)TAC>TAG	p.Y634*		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	634	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TGGTGTTGTAGTAATCTGGGA	0.458000													2	3					0	0	0.115264	0	0
PDCD6	10016	broad.mit.edu	37	5	311485	311485	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr5:311485G>A	uc003jat.1	+	5	545	c.445G>A	c.(445-447)GAC>AAC	p.D149N	AHRR_uc003jav.2_Intron|AHRR_uc003jaw.2_Intron|AHRR_uc010isy.2_Intron|PDCD6_uc003jau.1_Missense_Mutation_p.D179N	NM_013232	NP_037364	O75340	PDCD6_HUMAN	programmed cell death 6	149	EF-hand 4.				induction of apoptosis by extracellular signals|response to calcium ion	endoplasmic reticulum membrane|nuclear membrane	binding, bridging|calcium ion binding|calcium-dependent protein binding			breast(1)	1			Epithelial(17;0.00193)|OV - Ovarian serous cystadenocarcinoma(19;0.00489)|all cancers(22;0.00511)|Lung(60;0.113)			GATTGCCTTCGACGACTTCAT	0.582000													33	105					0	0	0.819951	0	0
NSUN2	54888	broad.mit.edu	37	5	6616902	6616902	+	Missense_Mutation	SNP	G	T	T	rs138724893		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr5:6616902G>T	uc003jdu.2	-	9	1024	c.959C>A	c.(958-960)ACG>AAG	p.T320K	NSUN2_uc003jdt.2_Missense_Mutation_p.T84K|NSUN2_uc011cmk.1_Missense_Mutation_p.T285K|NSUN2_uc003jdv.2_Missense_Mutation_p.T84K	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	320						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						TAGTGAACACGTGGAATACAC	0.468000													33	44					4.65686e-17	4.88683e-17	0.788014	1	0
C5orf51	285636	broad.mit.edu	37	5	41911262	41911262	+	Missense_Mutation	SNP	A	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr5:41911262A>T	uc003jmo.2	+	4	467	c.467A>T	c.(466-468)AAA>ATA	p.K156I		NM_175921	NP_787117	A6NDU8	CE051_HUMAN	hypothetical protein LOC285636	156											0						CTCTTAAGAAAATCCAGTTTG	0.383000													6	3					0	0	0.248553	0	0
MEGF10	84466	broad.mit.edu	37	5	126753406	126753406	+	Missense_Mutation	SNP	G	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr5:126753406G>A	uc003kuh.3	+	11	1569	c.1207G>A	c.(1207-1209)GGA>AGA	p.G403R	MEGF10_uc010jdc.1_Missense_Mutation_p.G403R|MEGF10_uc010jdd.1_Missense_Mutation_p.G403R|MEGF10_uc003kui.3_Missense_Mutation_p.G403R	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	403	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		ATGTTCTCCTGGATTCTACGG	0.532000													44	49					0	0	0.840704	0	0
CAP2	10486	broad.mit.edu	37	6	17507928	17507928	+	Silent	SNP	T	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr6:17507928T>C	uc003ncb.2	+	6	744	c.501T>C	c.(499-501)ACT>ACC	p.T167T	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Silent_p.T141T|CAP2_uc011djb.1_Intron|CAP2_uc011djc.1_Intron|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	167					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			CCTTTTACACTAACAGGGTCT	0.413000													40	69					0	0	0.864702	0	0
PLG	5340	broad.mit.edu	37	6	161152867	161152867	+	Missense_Mutation	SNP	C	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr6:161152867C>A	uc003qtm.3	+	12	1592	c.1529C>A	c.(1528-1530)CCC>CAC	p.P510H		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	510	Kringle 5.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	GCCCAGGAGCCCCATAGACAC	0.527000													4	96					0.00024832	0.000257405	0.150653	1	0
CAV2	858	broad.mit.edu	37	7	116140377	116140377	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr7:116140377T>A	uc003vid.2	+	2	606	c.214T>A	c.(214-216)TGC>AGC	p.C72S	CAV2_uc003vhv.2_Intron|CAV2_uc003vhw.2_Intron|CAV2_uc003vhx.2_Intron|CAV2_uc010lkb.1_Intron|CAV2_uc010lkc.2_RNA|CAV2_uc003vib.2_Intron|CAV2_uc003vhz.2_RNA|CAV2_uc003via.2_RNA|CAV1_uc010lkd.1_Intron|CAV1_uc010lke.1_Intron|CAV2_uc003vie.2_Intron	NM_001233	NP_001224	P51636	CAV2_HUMAN	caveolin 2 isoform a and b	72	Cytoplasmic (Potential).				caveola assembly|endoplasmic reticulum organization|mitochondrion organization|negative regulation of endothelial cell proliferation|positive regulation of dopamine receptor signaling pathway|regulation of mitosis|skeletal muscle fiber development|vesicle docking|vesicle fusion	caveola|extrinsic to internal side of plasma membrane|Golgi membrane|integral to plasma membrane|membrane fraction|nucleus|perinuclear region of cytoplasm|transport vesicle	D1 dopamine receptor binding|protein homodimerization activity				0	all_epithelial(6;1.53e-06)|Lung NSC(10;0.00592)|all_lung(10;0.00642)		STAD - Stomach adenocarcinoma(10;0.00878)			AGTGTGGATCTGCAGCCATGC	0.542000													78	226					0	0	0.870114	0	0
DPYSL2	1808	broad.mit.edu	37	8	26505196	26505196	+	Missense_Mutation	SNP	T	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr8:26505196T>A	uc003xfb.1	+	11	1511	c.1161T>A	c.(1159-1161)AAT>AAA	p.N387K	DPYSL2_uc003xfa.2_Missense_Mutation_p.N492K|DPYSL2_uc010luk.1_RNA|DPYSL2_uc011lah.1_Missense_Mutation_p.N351K	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	dihydropyrimidinase-like 2	387					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			large_intestine(1)	1		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		CCAGCACCAATGCAGCCAAAG	0.552000													104	59					0	0	0.870114	0	0
TTC35	9694	broad.mit.edu	37	8	109498794	109498794	+	Missense_Mutation	SNP	C	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr8:109498794C>G	uc003ymw.1	+	11	896	c.861C>G	c.(859-861)GAC>GAG	p.D287E		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	287						endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			CTGTCGAAGACATGTTGGAAA	0.338000													3	15					0	0	0.115264	0	0
TLN1	7094	broad.mit.edu	37	9	35711016	35711016	+	Silent	SNP	C	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr9:35711016C>T	uc003zxt.2	-	31	4437	c.4083G>A	c.(4081-4083)AAG>AAA	p.K1361K		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	1361	Interaction with SYNM.				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			TATCACACTCCTTCTGGCCGG	0.532000													42	115					0	0	0.847076	0	0
ZCCHC6	79670	broad.mit.edu	37	9	88940291	88940291	+	Missense_Mutation	SNP	G	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr9:88940291G>C	uc004aoq.2	-	12	1962	c.1747C>G	c.(1747-1749)CGG>GGG	p.R583G	ZCCHC6_uc011ltf.1_RNA|ZCCHC6_uc004aor.2_RNA|ZCCHC6_uc004aos.2_RNA|ZCCHC6_uc004aot.2_Missense_Mutation_p.R460G|ZCCHC6_uc004aou.2_Missense_Mutation_p.R583G	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6	583	PAP-associated 1.				RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						TTCAATTCCCGAGATACCAAT	0.403000													10	17					0	0	0.387290	0	0
AKNA	80709	broad.mit.edu	37	9	117139572	117139572	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr9:117139572A>C	uc004biq.3	-	2	650	c.515T>G	c.(514-516)GTG>GGG	p.V172G	AKNA_uc004bio.3_5'Flank|AKNA_uc004bip.3_Missense_Mutation_p.V91G|AKNA_uc004bir.3_Missense_Mutation_p.V172G|AKNA_uc004bis.3_Missense_Mutation_p.V172G|AKNA_uc010mve.2_Missense_Mutation_p.V53G|AKNA_uc004biu.1_Intron|AKNA_uc004biv.1_Missense_Mutation_p.V172G|AKNA_uc004biw.1_Missense_Mutation_p.V172G	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						GCCAGAAGCCACCCAGCCCCT	0.592000													8	101					0	0	0.750413	0	0
MAOA	4128	broad.mit.edu	37	X	43590945	43590945	+	Missense_Mutation	SNP	A	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chrX:43590945A>C	uc004dfy.2	+	8	981	c.800A>C	c.(799-801)AAA>ACA	p.K267T	MAOA_uc011mkw.1_Missense_Mutation_p.K134T	NM_000240	NP_000231	P21397	AOFA_HUMAN	monoamine oxidase A	267	Cytoplasmic.				behavior|neurotransmitter biosynthetic process|neurotransmitter catabolic process|neurotransmitter secretion|xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	primary amine oxidase activity|protein binding			breast(2)|ovary(1)	3					Almotriptan(DB00918)|Carbidopa(DB00190)|Clonazepam(DB01068)|Dopamine(DB00988)|Fluvoxamine(DB00176)|Ginkgo biloba(DB01381)|Imipramine(DB00458)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Linezolid(DB00601)|Lorazepam(DB00186)|Moclobemide(DB01171)|Nicotine(DB00184)|Norepinephrine(DB00368)|Phenelzine(DB00780)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Pseudoephedrine(DB00852)|Rasagiline(DB01367)|Riboflavin(DB00140)|Rizatriptan(DB00953)|Selegiline(DB01037)|Sumatriptan(DB00669)|Testosterone(DB00624)|Tranylcypromine(DB00752)|Zolmitriptan(DB00315)	TTTTAGTGCAAATACGTAATT	0.418000													27	53					0	0	0.706142	0	0
NDUFB11	54539	broad.mit.edu	37	X	47002143	47002143	+	Missense_Mutation	SNP	T	G	G			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chrX:47002143T>G	uc004dhd.2	-	2	739	c.208A>C	c.(208-210)AAC>CAC	p.N70H	NDUFB11_uc004dhc.2_Missense_Mutation_p.N70H|RBM10_uc004dhe.1_5'Flank|RBM10_uc004dhf.2_5'Flank|RBM10_uc004dhg.2_5'Flank|RBM10_uc004dhh.2_5'Flank|RBM10_uc010nhq.2_5'Flank|RBM10_uc004dhi.2_5'Flank	NM_001135998	NP_001129470	Q9NX14	NDUBB_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	70					respiratory electron transport chain|transport	integral to membrane|mitochondrial respiratory chain complex I					0						GAGTCTGGGTTCTGTGGAGAA	0.433000													7	161					0	0	0.248553	0	0
SSX8	280659	broad.mit.edu	37	X	52654550	52654550	+	Splice_Site	SNP	A	T	T			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chrX:52654550A>T	uc011moa.1	+	3		c.354_splice	c.e3-2		SSX8_uc011mob.1_Splice_Site					Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						TTTTTTTTTTAGGCCTTCAAT	0.413000													4	65					0	0	0.335167	0	0
NOX1	27035	broad.mit.edu	37	X	100099033	100099033	+	Missense_Mutation	SNP	T	C	C			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chrX:100099033T>C	uc004egj.2	-	13	1809	c.1603A>G	c.(1603-1605)ACT>GCT	p.T535A	NOX1_uc004egl.3_Missense_Mutation_p.T486A|NOX1_uc010nne.2_Missense_Mutation_p.T498A	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	535	Interaction with NOXO1.|Cytoplasmic (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						TTTGCCAAAGTCCGAGGGCCA	0.433000													13	19					0	0	0.411799	0	0
RELB	5971	broad.mit.edu	37	19	45515450	45515452	+	In_Frame_Del	DEL	CCG	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr19:45515450_45515452delCCG	uc002paj.1	+	5	546_548	c.420_422delCCG	c.(418-423)TTCCGC>TTC	p.R141del		NM_006509	NP_006500	Q01201	RELB_HUMAN	reticuloendotheliosis viral oncogene homolog B	141	RHD.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00986)		GCATGCGCTTCCGCTACGAGTGC	0.754													33	41	---	---	---	---					
C2orf71	388939	broad.mit.edu	37	2	29295647	29295649	+	In_Frame_Del	DEL	TCC	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr2:29295647_29295649delTCC	uc002rmt.1	-	1	1479_1481	c.1479_1481delGGA	c.(1477-1482)GAGGAA>GAA	p.493_494EE>E		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	493_494					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CATTTTGTCTTCCTCCTCCTCCT	0.542													8	789	---	---	---	---					
PTPN18	26469	broad.mit.edu	37	2	131129929	131129934	+	In_Frame_Del	DEL	GACGGG	-	-	rs112040677		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr2:131129929_131129934delGACGGG	uc002trc.2	+	13	1214_1219	c.1113_1118delGACGGG	c.(1111-1119)CAGACGGGG>CAG	p.TG378del	PTPN18_uc002trd.2_In_Frame_Del_p.TG357del|PTPN18_uc002trb.2_In_Frame_Del_p.TG271del|PTPN18_uc002tre.2_In_Frame_Del_p.TG29del	NM_014369	NP_055184	Q99952	PTN18_HUMAN	protein tyrosine phosphatase, non-receptor type	378_379				Missing (in Ref. 1; CAA56105).		cytoplasm|nucleus	non-membrane spanning protein tyrosine phosphatase activity			ovary(3)|kidney(1)	4	Colorectal(110;0.1)					gtgggacgcagacggggacggggacg	0.568													5	11	---	---	---	---					
AQP12A	375318	broad.mit.edu	37	2	241631786	241631786	+	Frame_Shift_Del	DEL	G	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr2:241631786delG	uc002vzu.2	+	2	488	c.419delG	c.(418-420)AGCfs	p.S140fs	AQP12A_uc002vzv.2_RNA	NM_198998	NP_945349	Q8IXF9	AQ12A_HUMAN	aquaporin 12A	140						integral to membrane	transporter activity				0		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		CAGAGCTGCAGCTCGGCCCTG	0.692													3	3	---	---	---	---					
AHCY	191	broad.mit.edu	37	20	32868894	32868914	+	In_Frame_Del	DEL	CTGGGCTTGCTTCTCAGTTAG	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr20:32868894_32868914delCTGGGCTTGCTTCTCAGTTAG	uc002xai.2	-	10	1364_1384	c.1225_1245delCTAACTGAGAAGCAAGCCCAG	c.(1225-1245)CTAACTGAGAAGCAAGCCCAGdel	p.LTEKQAQ409del	AHCY_uc002xaj.2_In_Frame_Del_p.LTEKQAQ381del	NM_000687	NP_000678	P23526	SAHH_HUMAN	adenosylhomocysteinase isoform 1	409_415					methylation|xenobiotic metabolic process	cytosol|melanosome	adenosylhomocysteinase activity|protein binding				0						TGCCCAGGTACTGGGCTTGCTTCTCAGTTAGCTTGGTCAAC	0.566													26	78	---	---	---	---					
PPARGC1B	133522	broad.mit.edu	37	5	149216400	149216402	+	In_Frame_Del	DEL	CAG	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr5:149216400_149216402delCAG	uc003lrc.2	+	8	2424_2426	c.2382_2384delCAG	c.(2380-2385)GACAGC>GAC	p.S799del	PPARGC1B_uc003lrb.1_In_Frame_Del_p.S799del|PPARGC1B_uc003lrd.2_In_Frame_Del_p.S760del|PPARGC1B_uc003lrf.2_In_Frame_Del_p.S778del|PPARGC1B_uc003lre.1_In_Frame_Del_p.S778del	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	799	Glu-rich.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			TCTTTGAAGACAGCAGCAGCAGC	0.453													7	557	---	---	---	---					
URGCP	55665	broad.mit.edu	37	7	43916495	43916495	+	Frame_Shift_Del	DEL	C	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr7:43916495delC	uc003tiw.2	-	6	2624	c.2567delG	c.(2566-2568)GGCfs	p.G856fs	URGCP_uc003tiu.2_Frame_Shift_Del_p.G813fs|URGCP_uc003tiv.2_Frame_Shift_Del_p.G781fs|URGCP_uc003tix.2_Frame_Shift_Del_p.G847fs|URGCP_uc003tiy.2_Frame_Shift_Del_p.G813fs|URGCP_uc003tiz.2_Frame_Shift_Del_p.G813fs|URGCP_uc011kbj.1_Frame_Shift_Del_p.G813fs	NM_001077663	NP_001071131	Q8TCY9	URGCP_HUMAN	up-regulated gene 4 isoform 3	856					cell cycle	centrosome|nucleus	GTP binding			ovary(2)|liver(1)|skin(1)	4						GAAGCCGTCGCCCTGTTTCTC	0.637													39	132	---	---	---	---					
HRCT1	646962	broad.mit.edu	37	9	35906584	35906586	+	In_Frame_Del	DEL	CCA	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chr9:35906584_35906586delCCA	uc003zyr.1	+	1	396_398	c.300_302delCCA	c.(298-303)CTCCAC>CTC	p.H105del	LOC158376_uc003zys.1_5'Flank	NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	105	His-rich.					integral to membrane					0						ctcaccacctccaccaccaccac	0.374													7	46	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	2583202	2583209	+	RNA	DEL	CCTTCCTT	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chrX:2583202_2583209delCCTTCCTT	uc004cql.2	+	1		c.858_865delCCTTCCTT								Homo sapiens cDNA FLJ39679 fis, clone SMINT2010068.																		CAATGGCCGGccttccttccttccttcc	0.226													2	4	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			7	57	---	---	---	---					
APEX2	27301	broad.mit.edu	37	X	55033524	55033525	+	Frame_Shift_Ins	INS	-	A	A			TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08									Somatic	Phase_I	Capture				Illumina GAIIx	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	g.chrX:55033524_55033525insA	uc004dtz.2	+	6	1289_1290	c.1213_1214insA	c.(1213-1215)CAAfs	p.Q405fs	APEX2_uc011mom.1_Frame_Shift_Ins_p.Q234fs	NM_014481	NP_055296	Q9UBZ4	APEX2_HUMAN	apurinic/apyrimidinic endonuclease 2	405					cell cycle|DNA recombination|DNA repair	nucleus	DNA binding|DNA-(apurinic or apyrimidinic site) lyase activity|endonuclease activity|exonuclease activity|zinc ion binding			breast(1)	1						TAGCTGTCCCCAAGCCTCTCCT	0.584								Other_BER_factors					8	187	---	---	---	---					
