Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KIAA0319L	79932	broad.mit.edu	37	1	36020070	36020070	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr1:36020070T>C	uc001byx.2	-	2	281	c.23A>G	c.(22-24)AAG>AGG	p.K8R	KIAA0319L_uc010ohw.1_RNA|KIAA0319L_uc001byz.2_Missense_Mutation_p.K8R|KIAA0319L_uc010ohx.1_Missense_Mutation_p.K8R	NM_024874	NP_079150	Q8IZA0	K319L_HUMAN	dyslexia susceptibility 2-like	8	Cytoplasmic (Potential).					cytoplasmic vesicle part|integral to membrane	protein binding			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGGATTTGGCTTGACTCCCAG	0.433000													4	114					0	0	0.00024832	0	0
PCF11	51585	broad.mit.edu	37	11	82882883	82882883	+	Silent	SNP	A	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr11:82882883A>G	uc001ozx.3	+	9	4029	c.3684A>G	c.(3682-3684)CCA>CCG	p.P1228P		NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	1228					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						TTGCTCAGCCAGTAGCTTTTG	0.328000													9	123					0	0	0.000274275	0	0
NLRX1	79671	broad.mit.edu	37	11	119051968	119051968	+	Splice_Site	SNP	T	A	A			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr11:119051968T>A	uc001pvu.2	+	8	2569	c.2354_splice	c.e8+2	p.R785_splice	NLRX1_uc010rzc.1_Nonstop_Mutation_p.*608R|NLRX1_uc001pvv.2_Splice_Site_p.R785_splice|NLRX1_uc001pvw.2_Splice_Site_p.R785_splice|NLRX1_uc001pvx.2_Splice_Site_p.R785_splice	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1						innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		CACACTGCGGTGAGTGACCTG	0.582000													16	35					0	0	0.000308642	0	0
VAT1L	57687	broad.mit.edu	37	16	78011538	78011538	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr16:78011538G>T	uc002ffg.1	+	9	1303	c.1206G>T	c.(1204-1206)GAG>GAT	p.E402D		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	402							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						GGGAAGAGGAGGAGGACCACG	0.517000													7	39					2.74318e-10	2.29277e-08	0.000442599	1	0
MYO15A	51168	broad.mit.edu	37	17	18025392	18025392	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr17:18025392C>T	uc010vxh.1	+	2	3616	c.3278C>T	c.(3277-3279)CCC>CTC	p.P1093L		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1093	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCCTTGGCGCCCATCAGGGCC	0.677000													8	76					0	0	0.000157383	0	0
CASC3	22794	broad.mit.edu	37	17	38324637	38324637	+	Silent	SNP	C	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr17:38324637C>G	uc010cwt.1	+	11	2227	c.1932C>G	c.(1930-1932)CCC>CCG	p.P644P	CASC3_uc002hue.2_Silent_p.P644P	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	644	Necessary for localization in cytoplasmic stress granules.|Poly-Pro.				mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						CACTGCCTCCCCCACCACCGC	0.473000											OREG0024392	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	86					0	0	0.00024832	0	0
PSG2	5670	broad.mit.edu	37	19	43576061	43576061	+	Missense_Mutation	SNP	C	T	T	rs1135795		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr19:43576061C>T	uc002ovr.2	-	4	848	c.755G>A	c.(754-756)CGT>CAT	p.R252H	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.R252H|PSG2_uc010eiq.1_Missense_Mutation_p.R252H|PSG2_uc002ovs.3_Missense_Mutation_p.R252H|PSG2_uc002ovt.3_Missense_Mutation_p.R252H	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	252	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				ATCTCCTGAACGGTAATTGGT	0.473000													9	207					0	0	0.000442599	0	0
ZNF404	342908	broad.mit.edu	37	19	44378055	44378055	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr19:44378055A>G	uc002oxs.3	-	2	311	c.302T>C	c.(301-303)GTG>GCG	p.V101A		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				AAAACATCCCACTTTAGGTCT	0.333000													13	265					0	0	0.000151284	0	0
C19orf63	284361	broad.mit.edu	37	19	50981244	50981244	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr19:50981244A>G	uc002psl.2	+	2	239	c.173A>G	c.(172-174)CAC>CGC	p.H58R	FAM71E1_uc002psg.2_5'Flank|FAM71E1_uc002psh.2_5'Flank|FAM71E1_uc002psi.2_5'Flank|C19orf63_uc002psj.2_Missense_Mutation_p.H58R|C19orf63_uc002psk.2_Missense_Mutation_p.H58R	NM_206538	NP_996261	Q5UCC4	INM02_HUMAN	hematopoietic signal peptide-containing isoform	58	Extracellular (Potential).					extracellular region|integral to membrane					0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00733)|GBM - Glioblastoma multiforme(134;0.0252)		CTGCTGGAGCACTCATTTGAG	0.607000													18	63					0	0	0.000958276	0	0
TGOLN2	10618	broad.mit.edu	37	2	85554235	85554236	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr2:85554235_85554236GG>TT	uc010fgd.1	-	2	908_909	c.619_620CC>AA	c.(619-621)CCT>AAT	p.P207N	TGOLN2_uc002soz.2_Missense_Mutation_p.P207N|TGOLN2_uc002spa.2_RNA|TGOLN2_uc002spb.2_Missense_Mutation_p.P207N|TGOLN2_uc002spc.1_Missense_Mutation_p.P207N	NM_006464	NP_006455	O43493	TGON2_HUMAN	trans-golgi network protein 2	207	Extracellular (Potential).|14 X 14 AA tandem repeats.|11.					integral to membrane|nucleus|plasma membrane|trans-Golgi network|transport vesicle	protein binding				0						CGACTTGTTAGGGACGTCTTTT	0.594000													12	421					0	0	6.4e-05	0	0
SCN1A	6323	broad.mit.edu	37	2	166904262	166904262	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr2:166904262A>T	uc010zcz.1	-	8	1063	c.1045T>A	c.(1045-1047)TAT>AAT	p.Y349N	SCN1A_uc002udo.3_Missense_Mutation_p.Y218N|SCN1A_uc010fpk.2_Missense_Mutation_p.Y218N	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	349	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	ACACACATATATCCCTCTGGA	0.408000													16	118					0	0	0.00074312	0	0
OSBPL6	114880	broad.mit.edu	37	2	179247924	179247924	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr2:179247924C>G	uc002ulx.2	+	17	2173	c.1795C>G	c.(1795-1797)CTG>GTG	p.L599V	OSBPL6_uc002uly.2_Missense_Mutation_p.L624V|OSBPL6_uc010zfe.1_Missense_Mutation_p.L568V|OSBPL6_uc002ulz.2_Missense_Mutation_p.L563V|OSBPL6_uc002uma.2_Missense_Mutation_p.L603V	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	599					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			GCTCAACACCCTGCAGCACCT	0.458000													22	29					0	0	0.000295444	0	0
BMPR2	659	broad.mit.edu	37	2	203395530	203395530	+	Silent	SNP	T	C	C	rs149225691	byFrequency	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr2:203395530T>C	uc002uzf.3	+	8	2129	c.981T>C	c.(979-981)CCT>CCC	p.P327P	BMPR2_uc010ftr.2_Silent_p.P327P	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	327	Protein kinase.|Cytoplasmic (Potential).				anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						ATTATAAACCTGCAATTTCCC	0.318000													3	36					0	0	6.4e-05	0	0
TM9SF4	9777	broad.mit.edu	37	20	30723909	30723909	+	Silent	SNP	A	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr20:30723909A>G	uc002wxj.2	+	3	397	c.162A>G	c.(160-162)CTA>CTG	p.L54L	TM9SF4_uc010ztr.1_5'UTR|TM9SF4_uc010zts.1_5'UTR|TM9SF4_uc002wxk.2_Silent_p.L37L	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	54						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GAACCCAGCTACCTTATGAAT	0.483000													3	75					0	0	0.000602214	0	0
ZNF280A	129025	broad.mit.edu	37	22	22869234	22869234	+	Missense_Mutation	SNP	C	A	A			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr22:22869234C>A	uc002zwe.2	-	2	974	c.721G>T	c.(721-723)GAT>TAT	p.D241Y	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	241					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		CTCTCTGGATCTGTAAGATTG	0.433000													8	72					1.49906e-05	0.00121377	0.000219431	1	0
EFCAB6	64800	broad.mit.edu	37	22	43976536	43976537	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr22:43976536_43976537CC>AA	uc003bdy.1	-	25	3250_3251	c.3035_3036GG>TT	c.(3034-3036)TGG>TTT	p.W1012F	EFCAB6_uc003bdz.1_Missense_Mutation_p.W860F|EFCAB6_uc010gzi.1_Missense_Mutation_p.W860F|EFCAB6_uc010gzj.1_Missense_Mutation_p.W238F	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1012					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				GGCTGACTCCCCAACTTGTCCC	0.446000													10	252					0	0	6.4e-05	0	0
PROS1	5627	broad.mit.edu	37	3	93629510	93629510	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr3:93629510G>A	uc003drb.3	-	4	640	c.299C>T	c.(298-300)GCA>GTA	p.A100V	PROS1_uc010hoo.2_5'UTR|PROS1_uc003dqz.3_5'UTR	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	100	Thrombin-sensitive.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	TGACTGACGTGCAGCAGTGAA	0.348000													5	44					0	0	3.59834e-05	0	0
DIRC2	84925	broad.mit.edu	37	3	122598138	122598139	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr3:122598138_122598139CG>AT	uc003efw.3	+	9	1489_1490	c.1350_1351CG>AT	c.(1348-1353)CCCGGG>CCATGG	p.G451W	DIRC2_uc010hrl.2_RNA|DIRC2_uc010hrm.2_Missense_Mutation_p.G289W|uc003efx.1_RNA	NM_032839	NP_116228	Q96SL1	DIRC2_HUMAN	disrupted in renal carcinoma 2	451	Helical; (Potential).				transport	integral to membrane					0				GBM - Glioblastoma multiforme(114;0.0614)		GGTGCCTTCCCGGGTCGTGTTT	0.455000													15	515					0	0	6.4e-05	0	0
ARMC8	25852	broad.mit.edu	37	3	137964017	137964017	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr3:137964017C>T	uc003esa.1	+	13	1451	c.1084C>T	c.(1084-1086)CGG>TGG	p.R362W	ARMC8_uc003erw.2_Missense_Mutation_p.R362W|ARMC8_uc003erx.2_Missense_Mutation_p.R362W|ARMC8_uc003ery.2_Missense_Mutation_p.R334W|ARMC8_uc003erz.2_Missense_Mutation_p.R334W|ARMC8_uc011bmf.1_Missense_Mutation_p.R345W|ARMC8_uc011bmg.1_Missense_Mutation_p.R309W|ARMC8_uc011bmh.1_Missense_Mutation_p.R303W|ARMC8_uc003esb.1_Missense_Mutation_p.R334W|ARMC8_uc003esc.1_Missense_Mutation_p.R134W	NM_015396	NP_056211	Q8IUR7	ARMC8_HUMAN	armadillo repeat containing 8 isoform 2	376	ARM 8.						binding				0						TGAAGACATCCGGAAGAAGGT	0.517000													6	78					0	0	3.59834e-05	0	0
SDHA	6389	broad.mit.edu	37	5	224586	224586	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr5:224586G>A	uc003jao.3	+	3	377	c.262G>A	c.(262-264)GCA>ACA	p.A88T	SDHA_uc003jan.2_Missense_Mutation_p.A88T|SDHA_uc011clv.1_Missense_Mutation_p.A88T|SDHA_uc011clw.1_Missense_Mutation_p.A88T|SDHA_uc003jap.3_Missense_Mutation_p.A88T	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	88					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	GTTTAATACAGCATGTGTTAC	0.547000									Familial_Paragangliomas				22	113					0	0	0.000295444	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33596055	33596055	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr5:33596055T>G	uc003jia.1	-	17	2801	c.2638A>C	c.(2638-2640)AAG>CAG	p.K880Q	ADAMTS12_uc010iuq.1_Missense_Mutation_p.K795Q	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	880	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GGACAAGCCTTTTCATGGCAC	0.507000										HNSCC(64;0.19)			22	108					0	0	0.000720815	0	0
HIST1H2BC	8347	broad.mit.edu	37	6	26123936	26123936	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr6:26123936A>C	uc003ngk.3	-	1	219	c.197T>G	c.(196-198)TTC>TGC	p.F66C	HIST1H2BC_uc003ngl.2_Missense_Mutation_p.F66C|HIST1H2AC_uc003ngm.2_5'Flank|HIST1H2AC_uc003ngn.2_5'Flank|HIST1H2AC_uc003ngo.2_5'Flank|HIST1H2AC_uc003ngp.2_5'Flank	NM_003526	NP_003517	P62807	H2B1C_HUMAN	histone cluster 1, H2bc	66					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			ovary(1)	1						GTCGTTAACGAAAGAATTCAT	0.557000													12	184					0	0	0.000151284	0	0
ULBP2	80328	broad.mit.edu	37	6	150263283	150263283	+	Silent	SNP	T	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr6:150263283T>G	uc003qno.2	+	1	148	c.75T>G	c.(73-75)GCT>GCG	p.A25A	ULBP2_uc011eeh.1_Silent_p.A25A|ULBP2_uc010kij.2_Silent_p.A25A	NM_025217	NP_079493	Q9BZM5	N2DL2_HUMAN	UL16 binding protein 2 precursor	25					antigen processing and presentation|immune response|natural killer cell activation|regulation of immune response	anchored to membrane|cell surface|extracellular space|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		GGTCCCGGGCTGGGCGAGCCG	0.657000													3	13					0	0	6.40141e-05	0	0
PLAT	5327	broad.mit.edu	37	8	42037495	42037495	+	Silent	SNP	G	A	A			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr8:42037495G>A	uc003xos.2	-	12	1521	c.1312C>T	c.(1312-1314)CTG>TTG	p.L438L	PLAT_uc010lxf.1_Silent_p.L355L|PLAT_uc010lxg.1_Silent_p.L263L|PLAT_uc003xot.2_Silent_p.L392L|PLAT_uc011lcm.1_Silent_p.L349L|PLAT_uc011lcn.1_Silent_p.L312L	NM_000930	NP_000921	P00750	TPA_HUMAN	plasminogen activator, tissue isoform 1	438	Peptidase S1.				blood coagulation|fibrinolysis|negative regulation of proteolysis|protein modification process|proteolysis	cell surface|cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			breast(1)|skin(1)	2	all_cancers(6;3.84e-26)|all_epithelial(6;9.61e-28)|all_lung(13;7.2e-13)|Lung NSC(13;1.18e-11)|Ovarian(28;0.00438)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000378)|Lung NSC(58;0.00145)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;5.23e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00135)|Colorectal(10;0.00165)|Lung(22;0.00467)|COAD - Colon adenocarcinoma(11;0.0171)|LUSC - Lung squamous cell carcinoma(45;0.024)		Alteplase(DB00009)|Aminocaproic Acid(DB00513)|Anistreplase(DB00029)|Iloprost(DB01088)|Reteplase(DB00015)|Tenecteplase(DB00031)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	CAGTCCGGCAGCTGCAGGTCC	0.662000													6	17					0	0	8.12818e-05	0	0
EYA1	2138	broad.mit.edu	37	8	72129012	72129012	+	Silent	SNP	C	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr8:72129012C>G	uc003xys.3	-	13	1562	c.1275G>C	c.(1273-1275)CGG>CGC	p.R425R	EYA1_uc003xyr.3_Silent_p.R390R|EYA1_uc003xyt.3_Silent_p.R392R|EYA1_uc010lzf.2_Silent_p.R352R|EYA1_uc003xyu.2_Silent_p.R425R|EYA1_uc011lfe.1_Silent_p.R419R|EYA1_uc003xyv.2_Silent_p.R303R	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	425					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			CCACACCGCCCCGTACACCAG	0.448000													3	99					0	0	0.00024832	0	0
ELAVL2	1993	broad.mit.edu	37	9	23762205	23762205	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr9:23762205T>C	uc003zpu.2	-	2	303	c.28A>G	c.(28-30)ACT>GCT	p.T10A	ELAVL2_uc003zps.2_Missense_Mutation_p.T10A|ELAVL2_uc003zpt.2_Missense_Mutation_p.T10A|ELAVL2_uc003zpv.2_Missense_Mutation_p.T10A|ELAVL2_uc003zpw.2_Missense_Mutation_p.T10A	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	10					regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		TTATTGCAAGTTGGCCCATTA	0.403000													66	270					0	0	0.000781405	0	0
TLE4	7091	broad.mit.edu	37	9	82267551	82267552	+	Missense_Mutation	DNP	CC	AA	AA	rs3186577		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr9:82267551_82267552CC>AA	uc004ald.2	+	7	1262_1263	c.413_414CC>AA	c.(412-414)CCC>CAA	p.P138Q	TLE4_uc004alc.2_Missense_Mutation_p.P145Q|TLE4_uc010mpr.2_Missense_Mutation_p.P24Q|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Missense_Mutation_p.P113Q|TLE4_uc010mps.2_Missense_Mutation_p.P138Q|TLE4_uc004alf.2_Missense_Mutation_p.P84Q	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						CATGGTCTCCCCGTACCTCTGA	0.559000													9	254					0	0	6.4e-05	0	0
UAP1L1	91373	broad.mit.edu	37	9	139972976	139972976	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr9:139972976A>G	uc010ncb.2	+	3	549	c.517A>G	c.(517-519)ACT>GCT	p.T173A	UAP1L1_uc004cla.3_Missense_Mutation_p.T50A	NM_207309	NP_997192	Q3KQV9	UAP1L_HUMAN	UDP-N-acteylglucosamine pyrophosphorylase 1-like	173							nucleotidyltransferase activity			ovary(1)	1	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;2.96e-05)|Epithelial(140;0.000486)		CAGCGAGTTCACTCTGGGGCC	0.662000													15	62					0	0	0.000958276	0	0
SYAP1	94056	broad.mit.edu	37	X	16773188	16773188	+	Silent	SNP	T	C	C			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chrX:16773188T>C	uc004cxp.2	+	6	789	c.696T>C	c.(694-696)AAT>AAC	p.N232N	SYAP1_uc004cxo.2_Silent_p.N232N|SYAP1_uc011miv.1_Silent_p.N198N	NM_032796	NP_116185	Q96A49	SYAP1_HUMAN	SYAP1 protein	232										skin(1)	1	Hepatocellular(33;0.0997)					AGAAGAGCAATGGCAGAGAGC	0.522000													36	42					0	0	0.00058488	0	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9160442	9160442	+	RNA	SNP	A	C	C			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chrY:9160442A>C	uc004frl.1	-	1		c.42T>G				NR_001547				Homo sapiens RBMY1A3P pseudogene, mRNA sequence.												0						TTGAGGCCACAAATGAAAAGC	0.313000													3	65					0	0	0.00024832	0	0
FNBP4	23360	broad.mit.edu	37	11	47744589	47744591	+	In_Frame_Del	DEL	GGA	-	-			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr11:47744589_47744591delGGA	uc009ylv.2	-	15	2895_2897	c.2742_2744delTCC	c.(2740-2745)CCTCCA>CCA	p.914_915PP>P	FNBP4_uc001ngi.2_In_Frame_Del_p.228_229PP>P|FNBP4_uc001ngj.2_In_Frame_Del_p.821_822PP>P	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	914_915	Pro-rich.									ovary(1)	1						tggtggtggtggaggaggaggag	0.320													2	4	---	---	---	---					
FIGNL2	401720	broad.mit.edu	37	12	52215124	52215124	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr12:52215124delC	uc001rzc.2	-	1	1085	c.1074delG	c.(1072-1074)GGGfs	p.G358fs		NM_001013690	NP_001013712	A6NMB9	FIGL2_HUMAN	fidgetin-like 2	358							ATP binding|nucleoside-triphosphatase activity				0				BRCA - Breast invasive adenocarcinoma(357;0.135)		GCACGGCGAACCCCCCACGAG	0.716													2	4	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106573362	106573364	+	RNA	DEL	ACC	-	-	rs2003432	by1000genomes	TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr14:106573362_106573364delACC	uc010tyt.1	-	1362		c.29161_29163delGGT								Parts of antibodies, mostly variable regions.												0						ATATGGTACTACCACTACTACTA	0.522													7	418	---	---	---	---					
ADAM6	8755	broad.mit.edu	37	14	106919168	106919168	+	RNA	DEL	C	-	-			TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr14:106919168delC	uc010tyt.1	-	245		c.10611delG			uc010tyu.1_Intron					Parts of antibodies, mostly variable regions.												0						ACGTTAACCTCCCCCTCACTG	0.557													2	4	---	---	---	---					
POU4F2	5458	broad.mit.edu	37	4	147560457	147560458	+	In_Frame_Ins	INS	-	GGC	GGC	rs67907220		TCGA-BQ-7049-01A-11D-1961-08	TCGA-BQ-7049-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	91478a08-9bea-426b-bd0c-ca7cc87297b1	fd0fcf99-b8da-43e8-9ccb-9c792ac32047	g.chr4:147560457_147560458insGGC	uc003ikv.2	+	1	413_414	c.165_166insGGC	c.(163-168)insGGC	p.68_69insG		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	68_69					estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					ACGCTggtggtggcggcggcgg	0.386													4	3	---	---	---	---					
