Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
EPHA8	2046	broad.mit.edu	37	1	22903099	22903099	+	Silent	SNP	G	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr1:22903099G>T	uc001bfx.1	+	3	674	c.549G>T	c.(547-549)CTG>CTT	p.L183L	EPHA8_uc001bfw.2_Silent_p.L183L	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	183	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCTTCTACCTGGCCTTCCAGG	0.617													22	37					6.44725e-10	3.25e-08	3.10358e-05	1	0
RCC1	1104	broad.mit.edu	37	1	28862497	28862497	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr1:28862497G>A	uc001bqg.1	+	7	861	c.776G>A	c.(775-777)GGC>GAC	p.G259D	SNHG3-RCC1_uc001bqa.1_Missense_Mutation_p.G259D|SNHG3-RCC1_uc001bqb.1_Missense_Mutation_p.G259D|SNHG3-RCC1_uc001bqc.1_Missense_Mutation_p.G259D|RCC1_uc001bqe.1_Missense_Mutation_p.G276D|RCC1_uc001bqf.1_Missense_Mutation_p.G290D	NM_001269	NP_001260	P18754	RCC1_HUMAN	regulator of chromosome condensation 1 isoform	259	RCC1 5.				cell division|chromosome segregation|G1/S transition of mitotic cell cycle|mitosis|mitotic spindle organization|regulation of mitosis|regulation of S phase of mitotic cell cycle|spindle assembly|viral reproduction	condensed nuclear chromosome|cytoplasm|nuclear chromatin|nuclear membrane|nucleoplasm	histone binding|nucleosomal DNA binding|Ran guanyl-nucleotide exchange factor activity			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000318)|all_lung(284;0.000434)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.00989)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|KIRC - Kidney renal clear cell carcinoma(1967;0.0101)|BRCA - Breast invasive adenocarcinoma(304;0.022)|READ - Rectum adenocarcinoma(331;0.0649)		TCCCATGAGGGCCACGTGTAC	0.512													5	58					0	0	1.23904e-05	0	0
NOTCH2	4853	broad.mit.edu	37	1	120458888	120458888	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr1:120458888A>T	uc001eik.2	-	34	6713	c.6457T>A	c.(6457-6459)TCC>ACC	p.S2153T		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2153	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATTCTAGGGAATCAACAGGG	0.498			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				30	57					0	0	3.70037e-05	0	0
NBPF9	400818	broad.mit.edu	37	1	144823878	144823878	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr1:144823878A>C	uc009wig.1	+	17	1995	c.1919A>C	c.(1918-1920)TAT>TCT	p.Y640S	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.Y441S|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.Y300S	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	640	NBPF 4.					cytoplasm					0						TATAGATGTTATTCAACTCCT	0.483													3	72					0	0	0.00024832	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57085299	57085299	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr11:57085299G>A	uc001njr.2	-	3	1103	c.791C>T	c.(790-792)CCT>CTT	p.P264L	TNKS1BP1_uc001njs.2_Missense_Mutation_p.P264L|TNKS1BP1_uc009ymd.1_5'UTR	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	264	Pro-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				CACATCAGCAGGTAGCTCCGA	0.363													7	34					0	0	0.000157383	0	0
NAA16	79612	broad.mit.edu	37	13	41905433	41905433	+	Missense_Mutation	SNP	A	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr13:41905433A>T	uc001uyf.2	+	8	1159	c.835A>T	c.(835-837)ATT>TTT	p.I279F	NAA16_uc010tfg.1_RNA|NAA16_uc001uye.3_Missense_Mutation_p.I279F|NAA16_uc001uyd.3_Missense_Mutation_p.I279F	NM_024561	NP_078837	Q6N069	NAA16_HUMAN	NMDA receptor regulated 1-like protein isoform	279					N-terminal protein amino acid acetylation|positive regulation of transcription, DNA-dependent	cytoplasm|transcription factor complex	binding			central_nervous_system(1)	1						GAGGCTTCAAATTTATGAAGA	0.318													39	74					0	0	0.000270559	0	0
TEP1	7011	broad.mit.edu	37	14	20841196	20841196	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr14:20841196C>T	uc001vxe.2	-	48	6965	c.6925G>A	c.(6925-6927)GAA>AAA	p.E2309K	TEP1_uc010ahj.1_RNA|TEP1_uc010ahk.2_Missense_Mutation_p.E1652K|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.E2201K|TEP1_uc010tlh.1_Missense_Mutation_p.E647K	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	2309	WD 16.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GCCTTAGCTTCCTGCCACAAG	0.517													32	45					0	0	0.000109025	0	0
NDNL2	56160	broad.mit.edu	37	15	29561225	29561225	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr15:29561225G>C	uc001zco.2	-	1	793	c.685C>G	c.(685-687)CGA>GGA	p.R229G	FAM189A1_uc010azk.1_Intron	NM_138704	NP_619649	Q96MG7	MAGG1_HUMAN	necdin-like 2	229	MAGE.				regulation of growth	cytoplasm|nucleus					0		all_lung(180;4.69e-11)|Breast(32;0.0013)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00736)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		TAACGCTGTCGCACAAAGTCC	0.532													42	71					0	0	8.96297e-05	0	0
ARHGAP11A	9824	broad.mit.edu	37	15	32928906	32928906	+	Missense_Mutation	SNP	T	G	G			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr15:32928906T>G	uc001zgy.1	+	12	2654	c.1932T>G	c.(1930-1932)TTT>TTG	p.F644L	ARHGAP11A_uc010ubw.1_Missense_Mutation_p.F455L|ARHGAP11A_uc010ubx.1_Missense_Mutation_p.F455L	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	644					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		AAAATCTATTTGAAACTAATG	0.358													23	18					0	0	4.16121e-05	0	0
NR2F2	7026	broad.mit.edu	37	15	96877563	96877563	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr15:96877563C>G	uc010uri.1	+	2	1925	c.701C>G	c.(700-702)CCC>CGC	p.P234R	NR2F2_uc002btp.2_Missense_Mutation_p.P101R|NR2F2_uc010urj.1_Missense_Mutation_p.P81R|NR2F2_uc010urk.1_Missense_Mutation_p.P81R	NM_021005	NP_066285	P24468	COT2_HUMAN	nuclear receptor subfamily 2, group F, member 2	234	Interaction with ZFPM2 (By similarity).|Ligand-binding (By similarity).				lipid metabolic process|negative regulation of cyclin-dependent protein kinase activity|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment	nucleus	ligand-regulated transcription factor activity|protein homodimerization activity|retinoic acid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(1)	3	Lung NSC(78;0.0186)|Melanoma(26;0.0195)|all_lung(78;0.0297)		OV - Ovarian serous cystadenocarcinoma(32;0.0856)			CCCTTCTTCCCCGACCTGCAG	0.617													5	126					0	0	3.59834e-05	0	0
TMC5	79838	broad.mit.edu	37	16	19490814	19490814	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr16:19490814C>G	uc002dgc.3	+	14	2980	c.2231C>G	c.(2230-2232)TCT>TGT	p.S744C	TMC5_uc010vaq.1_Missense_Mutation_p.S692C|TMC5_uc002dgb.3_Missense_Mutation_p.S744C|TMC5_uc010var.1_Missense_Mutation_p.S744C|TMC5_uc002dgd.1_Missense_Mutation_p.S498C|TMC5_uc002dge.3_Missense_Mutation_p.S498C|TMC5_uc002dgf.3_Missense_Mutation_p.S427C|TMC5_uc002dgg.3_Missense_Mutation_p.S385C	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	744	Helical; (Potential).					integral to membrane				skin(1)	1						TTTGTGTTCTCTTTAGTCAAT	0.473													94	223					0	0	0.000147903	0	0
ITGAX	3687	broad.mit.edu	37	16	31383749	31383749	+	Silent	SNP	G	A	A			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr16:31383749G>A	uc002ebu.1	+	18	2278	c.2211G>A	c.(2209-2211)ACG>ACA	p.T737T	ITGAX_uc002ebt.2_Silent_p.T737T	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	737	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGAACTTCACGCTGGTGGGCA	0.637													56	54					0	0	0.000147903	0	0
ITGAD	3681	broad.mit.edu	37	16	31422759	31422760	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr16:31422759_31422760CG>AT	uc002ebv.1	+	14	1677_1678	c.1628_1629CG>AT	c.(1627-1629)CCG>CAT	p.P543H	ITGAD_uc010cap.1_Missense_Mutation_p.P544H	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	543	FG-GAP 6.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						ATTGGGGCCCCGGGAGAGCAGG	0.644													7	237					0	0	6.4e-05	0	0
C16orf70	80262	broad.mit.edu	37	16	67168085	67168085	+	Silent	SNP	T	C	C			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr16:67168085T>C	uc002erc.2	+	8	549	c.465T>C	c.(463-465)CAT>CAC	p.H155H	C16orf70_uc002erd.2_Silent_p.H155H|C16orf70_uc002ere.1_Silent_p.H230H	NM_025187	NP_079463	Q9BSU1	CP070_HUMAN	lin-10	155										ovary(2)	2		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0017)|Epithelial(162;0.00655)|all cancers(182;0.0579)		ATTTTGCCCATGGCCTGGCTT	0.483													38	96					0	0	0.000106405	0	0
MYH13	8735	broad.mit.edu	37	17	10267725	10267725	+	Silent	SNP	C	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr17:10267725C>T	uc002gmk.1	-	3	213	c.123G>A	c.(121-123)GCG>GCA	p.A41A		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	41	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						CCTTATTATCCGCTACAAAGC	0.453													10	44					0	0	0.00010058	0	0
CCDC144C	348254	broad.mit.edu	37	17	20243242	20243242	+	RNA	SNP	A	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr17:20243242A>T	uc010cqy.1	+	5		c.1331A>T				NR_023380				Homo sapiens cDNA FLJ59693 complete cds, moderately similar to Ankyrin repeat domain-containing protein 26.												0						AGCTTCATTTACATGAAAATA	0.358													36	78					0	0	0.000147903	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904139	21904139	+	RNA	SNP	T	G	G			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr17:21904139T>G	uc002gza.2	+	1		c.78T>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ccgagcaggatgaggaaacca	0													3	40					0	0	0.00024832	0	0
ERAL1	26284	broad.mit.edu	37	17	27182278	27182278	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr17:27182278T>C	uc002hcy.1	+	1	236	c.226T>C	c.(226-228)TTC>CTC	p.F76L	ERAL1_uc002hcx.1_Missense_Mutation_p.F76L|ERAL1_uc002hcz.1_RNA|ERAL1_uc002hda.1_5'Flank|ERAL1_uc002hdb.1_5'Flank	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	76					ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			CTTCCTCGGATTCTCTCAGCC	0.602													49	34					0	0	0.000147903	0	0
DLGAP1	9229	broad.mit.edu	37	18	3499238	3499238	+	Missense_Mutation	SNP	G	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr18:3499238G>T	uc002kmf.2	-	10	2946	c.2879C>A	c.(2878-2880)ACC>AAC	p.T960N	DLGAP1_uc002kme.1_Missense_Mutation_p.T658N|DLGAP1_uc010dkn.2_Missense_Mutation_p.T668N|DLGAP1_uc010wyw.1_Missense_Mutation_p.T666N|DLGAP1_uc010wyx.1_Missense_Mutation_p.T682N|DLGAP1_uc010wyy.1_Missense_Mutation_p.T644N	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	960					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GGCGCTCTCGGTGGCCGAGTT	0.731													5	14					5.9392e-07	2.92737e-05	3.59834e-05	1	0
ZNF274	10782	broad.mit.edu	37	19	58724137	58724138	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr19:58724137_58724138CG>AT	uc002qrq.1	+	10	2049_2050	c.1590_1591CG>AT	c.(1588-1593)ACCGGA>ACATGA	p.G531*	ZNF274_uc002qrr.1_Nonsense_Mutation_p.G499*|ZNF274_uc002qrs.1_Nonsense_Mutation_p.G426*|ZNF274_uc010eum.1_Nonsense_Mutation_p.G290*	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	531					viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		AAATCCATACCGGAGAGAGGCC	0.441													9	129					0	0	6.4e-05	0	0
ZNRF3	84133	broad.mit.edu	37	22	29445350	29445350	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr22:29445350T>C	uc003aeg.2	+	8	1046	c.881T>C	c.(880-882)GTC>GCC	p.V294A	ZNRF3_uc003aeh.1_Missense_Mutation_p.V294A	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	394	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						GGCAACCCCGTCACCTTGCTG	0.667													13	34					0	0	0.000151284	0	0
ZNF619	285267	broad.mit.edu	37	3	40529349	40529349	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr3:40529349C>T	uc011azb.1	+	6	1746	c.1468C>T	c.(1468-1470)CAC>TAC	p.H490Y	ZNF619_uc010hhz.2_Missense_Mutation_p.H441Y|ZNF619_uc003ckj.2_Missense_Mutation_p.H434Y|ZNF619_uc011azc.1_Missense_Mutation_p.H450Y|ZNF619_uc011azd.1_Missense_Mutation_p.H406Y|ZNF619_uc011aza.1_Missense_Mutation_p.H392Y	NM_001145082	NP_001138554	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619 isoform 1	490					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		TCAGCGAGTTCACACTGGGGA	0.463													54	44					0	0	0.000147903	0	0
RPL29	6159	broad.mit.edu	37	3	52029445	52029445	+	Silent	SNP	G	A	A			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr3:52029445G>A	uc003dcs.2	-	2	127	c.33C>T	c.(31-33)AAC>AAT	p.N11N		NM_000992	NP_000983	P47914	RL29_HUMAN	ribosomal protein L29	11					embryo implantation|endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	heparin binding|protein binding|RNA binding|structural constituent of ribosome				0				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ACTTACACTGGTTGTGTGTGG	0.567													22	64					0	0	4.16121e-05	0	0
HGD	3081	broad.mit.edu	37	3	120366724	120366724	+	Missense_Mutation	SNP	C	G	G			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr3:120366724C>G	uc003edw.2	-	7	839	c.469G>C	c.(469-471)GTT>CTT	p.V157L	HGD_uc003edv.2_Missense_Mutation_p.V16L	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	157					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		CAGAACTCACCAATCAAGAAG	0.353													5	204					0	0	8.12818e-05	0	0
POLQ	10721	broad.mit.edu	37	3	121168266	121168266	+	Missense_Mutation	SNP	T	C	C			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr3:121168266T>C	uc003eee.3	-	26	7289	c.7160A>G	c.(7159-7161)TAT>TGT	p.Y2387C	POLQ_uc003eed.2_Missense_Mutation_p.Y1559C	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	2387					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AATGATCCCATAGCAAATCTG	0.358								DNA_polymerases_(catalytic_subunits)					158	166					0	0	0.000147903	0	0
KPNA4	3840	broad.mit.edu	37	3	160249255	160249255	+	Silent	SNP	A	G	G			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr3:160249255A>G	uc003fdn.2	-	6	684	c.378T>C	c.(376-378)GAT>GAC	p.D126D		NM_002268	NP_002259	O00629	IMA4_HUMAN	karyopherin alpha 4	126	ARM 2.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			CTCACTTGTCATCTCTTTCAA	0.303													100	92					0	0	0.000147903	0	0
MAP3K13	9175	broad.mit.edu	37	3	185200185	185200186	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr3:185200185_185200186GG>TT	uc010hyf.2	+	15	3108_3109	c.2842_2843GG>TT	c.(2842-2844)GGG>TTG	p.G948L	MAP3K13_uc011brt.1_Missense_Mutation_p.G741L|MAP3K13_uc011bru.1_Missense_Mutation_p.G804L|MAP3K13_uc003fpi.2_Missense_Mutation_p.G948L|MAP3K13_uc010hyg.2_Missense_Mutation_p.G638L	NM_004721	NP_004712	O43283	M3K13_HUMAN	mitogen-activated protein kinase kinase kinase	948					activation of MAPKK activity|JNK cascade|positive regulation of NF-kappaB transcription factor activity|protein autophosphorylation	cytoplasm|membrane|membrane fraction	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			ovary(2)|skin(1)	3	all_cancers(143;7.21e-11)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)			CTCTTCAGATGGGGAGTGTTCT	0.391													9	275					0	0	6.4e-05	0	0
DGKG	1608	broad.mit.edu	37	3	186006591	186006591	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr3:186006591G>A	uc003fqa.2	-	6	989	c.452C>T	c.(451-453)TCT>TTT	p.S151F	DGKG_uc003fqb.2_Missense_Mutation_p.S151F|DGKG_uc003fqc.2_Missense_Mutation_p.S151F|DGKG_uc011brx.1_Missense_Mutation_p.S151F	NM_001346	NP_001337	P49619	DGKG_HUMAN	diacylglycerol kinase gamma isoform 1	151	Poly-Ser.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	all_cancers(143;3.26e-12)|Ovarian(172;0.0315)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.93e-20)	GBM - Glioblastoma multiforme(93;0.0657)	Phosphatidylserine(DB00144)	CGAGCTTGAAGACCGAGGGAC	0.552													78	259					0	0	0.000147903	0	0
MUC4	4585	broad.mit.edu	37	3	195516451	195516451	+	Missense_Mutation	SNP	G	C	C			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr3:195516451G>C	uc011bto.1	-	2	2460	c.2000C>G	c.(1999-2001)CCA>CGA	p.P667R	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.P549R	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	672					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GGAAGAACCTGGGGTGGTGAC	0.572													4	138					0	0	1.23904e-05	0	0
KLHL8	57563	broad.mit.edu	37	4	88091355	88091355	+	Missense_Mutation	SNP	C	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr4:88091355C>T	uc011cdb.1	-	8	1798	c.1413G>A	c.(1411-1413)ATG>ATA	p.M471I	KLHL8_uc003hql.1_Missense_Mutation_p.M471I|KLHL8_uc003hqm.1_Missense_Mutation_p.M395I|KLHL8_uc003hqn.1_Missense_Mutation_p.M288I|KLHL8_uc010ikj.1_Missense_Mutation_p.M120I	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	471	Kelch 4.										0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		ATAAAGAAGCCATTCCATCAT	0.368													7	98					0	0	1.12685e-05	0	0
RUNX2	860	broad.mit.edu	37	6	45390466	45390466	+	Silent	SNP	A	G	G			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr6:45390466A>G	uc011dvx.1	+	3	405	c.195A>G	c.(193-195)CAA>CAG	p.Q65Q	RUNX2_uc011dvy.1_Silent_p.Q65Q|RUNX2_uc003oxt.2_Silent_p.Q51Q	NM_001024630	NP_001019801	Q13950	RUNX2_HUMAN	runt-related transcription factor 2 isoform a	65	Poly-Gln.				negative regulation of transcription, DNA-dependent|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3						agcagcagcaacagcagcagc	0.274													4	34					0	0	0.00024832	0	0
C7orf57	136288	broad.mit.edu	37	7	48081007	48081007	+	Silent	SNP	C	A	A			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr7:48081007C>A	uc003toh.3	+	3	344	c.132C>A	c.(130-132)CTC>CTA	p.L44L	C7orf57_uc003toi.3_5'UTR	NM_001100159	NP_001093629	Q8NEG2	CG057_HUMAN	hypothetical protein LOC136288	44										ovary(1)	1						TCCCAGGTCTCAGCAATTTGG	0.542													36	37					5.43694e-19	2.87122e-17	0.000191422	1	0
ST7	7982	broad.mit.edu	37	7	116863027	116863027	+	Missense_Mutation	SNP	A	G	G			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr7:116863027A>G	uc003vin.2	+	16	1965	c.1751A>G	c.(1750-1752)CAA>CGA	p.Q584R	ST7_uc011knl.1_Missense_Mutation_p.Q561R|ST7_uc003vio.2_Intron|ST7_uc003viq.2_Intron|ST7_uc011knm.1_Intron|ST7_uc003vir.2_Intron|ST7_uc011knn.1_Intron	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	584						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		caacatttccaaaactgaact	0.179													36	39					0	0	0.000109025	0	0
POP1	10940	broad.mit.edu	37	8	99161148	99161148	+	Missense_Mutation	SNP	G	A	A			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr8:99161148G>A	uc003yij.3	+	13	1916	c.1816G>A	c.(1816-1818)GTG>ATG	p.V606M	POP1_uc011lgv.1_Missense_Mutation_p.V606M|POP1_uc003yik.2_Missense_Mutation_p.V606M	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	606					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			GCCAGGAAAAGTGACTGGTGA	0.478													15	23					0	0	2.31682e-05	0	0
SVEP1	79987	broad.mit.edu	37	9	113163288	113163288	+	Missense_Mutation	SNP	A	C	C			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr9:113163288A>C	uc010mtz.2	-	40	10005	c.9668T>G	c.(9667-9669)CTT>CGT	p.L3223R	SVEP1_uc010mty.2_Missense_Mutation_p.L1149R	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3223	Sushi 30.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GGTTCCATCAAGCTAAGTGAC	0.358													26	60					0	0	0.000227799	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071154	141071154	+	Missense_Mutation	SNP	T	C	C	rs150819761	by1000genomes	TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr9:141071154T>C	uc004com.2	+	4	818	c.557T>C	c.(556-558)GTC>GCC	p.V186A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GTGAACATGGTCCCGTTTCCC	0.632													6	55					0	0	8.12818e-05	0	0
BEND2	139105	broad.mit.edu	37	X	18195783	18195783	+	Silent	SNP	A	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chrX:18195783A>T	uc004cyj.3	-	10	1690	c.1536T>A	c.(1534-1536)ATT>ATA	p.I512I	BEND2_uc010nfb.2_Silent_p.I421I	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	512	BEN 1.									ovary(3)|kidney(1)|central_nervous_system(1)	5						TGGAGAACAAAATACGAACCA	0.428													180	66					0	0	0.000147903	0	0
KDM6A	7403	broad.mit.edu	37	X	44733231	44733231	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chrX:44733231A>T	uc004dge.3	+	2	598	c.223A>T	c.(223-225)AAG>TAG	p.K75*	KDM6A_uc010nhk.2_Nonsense_Mutation_p.K75*|KDM6A_uc011mkz.1_Nonsense_Mutation_p.K75*|KDM6A_uc011mla.1_Nonsense_Mutation_p.K75*|KDM6A_uc011mlb.1_Nonsense_Mutation_p.K75*|KDM6A_uc011mlc.1_5'UTR	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	75					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.0(8)|p.0?(6)		kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						CCTACTGGGCAAGGTAAGGCA	0.478			D|N|F|S		renal|oesophageal SCC|MM								6	3					0	0	0.000157383	0	0
MUL1	79594	broad.mit.edu	37	1	20827614	20827614	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr1:20827614delG	uc001bdi.3	-	4	785	c.628delC	c.(628-630)CTGfs	p.L210fs		NM_024544	NP_078820	Q969V5	MUL1_HUMAN	mitochondrial ubiquitin ligase activator of NFKB	210	Mitochondrial intermembrane (Potential).				activation of caspase activity|activation of JUN kinase activity|induction of apoptosis|mitochondrial fission|mitochondrion localization|negative regulation of cell growth|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to mitochondrial outer membrane|nucleus|peroxisome	identical protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00748)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000137)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00124)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		GGCGGCTGCAGGCGGACAGAG	0.607													45	98	---	---	---	---					
KBTBD4	55709	broad.mit.edu	37	11	47597183	47597183	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr11:47597183delT	uc001nfx.2	-	3	829	c.658delA	c.(658-660)AGAfs	p.R220fs	NDUFS3_uc001nft.3_Intron|KBTBD4_uc001nfw.1_Frame_Shift_Del_p.R245fs|KBTBD4_uc001nfz.2_Frame_Shift_Del_p.R236fs|KBTBD4_uc001nfy.2_Frame_Shift_Del_p.R220fs	NM_016506	NP_057590	Q9NVX7	KBTB4_HUMAN	kelch repeat and BTB (POZ) domain containing 4	220	BACK.									ovary(1)|central_nervous_system(1)	2						AAAGCCTCTCTTTCCTCTTTA	0.443													44	136	---	---	---	---					
TNRC6A	27327	broad.mit.edu	37	16	24807240	24807240	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr16:24807240delA	uc002dmm.2	+	9	3655	c.3541delA	c.(3541-3543)AAAfs	p.K1181fs	TNRC6A_uc010bxs.2_Frame_Shift_Del_p.K928fs|TNRC6A_uc010vcc.1_Frame_Shift_Del_p.K928fs|TNRC6A_uc002dmn.2_Frame_Shift_Del_p.K928fs|TNRC6A_uc002dmo.2_Frame_Shift_Del_p.K869fs	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	1181	Sufficient for interaction with EIF2C1 and EIF2C4.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		TCTGAGTGGCAAAAAAAGGAG	0.224													7	316	---	---	---	---					
ZNF559	84527	broad.mit.edu	37	19	9453288	9453288	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr19:9453288delA	uc002mlg.2	+	7	1808	c.1161delA	c.(1159-1161)GGAfs	p.G387fs	ZNF559_uc002mlf.2_Frame_Shift_Del_p.G156fs|ZNF559_uc010dwl.1_Frame_Shift_Del_p.G156fs|ZNF559_uc010xkn.1_Frame_Shift_Del_p.G379fs|ZNF559_uc010dwm.1_3'UTR|ZNF559_uc002mle.3_Frame_Shift_Del_p.G451fs|ZNF559_uc010dwk.1_Frame_Shift_Del_p.G156fs|ZNF559_uc002mld.2_3'UTR|ZNF559_uc010dwo.1_Intron|ZNF177_uc002mli.2_Intron|ZNF177_uc002mlj.2_Intron	NM_032497	NP_115886	Q9BR84	ZN559_HUMAN	zinc finger protein 559	387	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGGAATGTGGAAAAGCCTTTA	0.393													20	54	---	---	---	---					
LRBA	987	broad.mit.edu	37	4	151271258	151271259	+	Frame_Shift_Ins	INS	-	AT	AT			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr4:151271258_151271259insAT	uc010ipj.2	-	49	7754_7755	c.7280_7281insAT	c.(7279-7281)ATTfs	p.I2427fs	LRBA_uc010ipi.2_Intron|LRBA_uc003ils.3_Frame_Shift_Ins_p.I317fs|LRBA_uc003ilt.3_Frame_Shift_Ins_p.I1075fs|LRBA_uc003ilu.3_Frame_Shift_Ins_p.I2416fs	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	2427	BEACH.					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					TATAGCCAAAAATGAGATCAAT	0.391													12	58	---	---	---	---					
NSD1	64324	broad.mit.edu	37	5	176637880	176637880	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr5:176637880delT	uc003mfr.3	+	5	2618	c.2480delT	c.(2479-2481)ATTfs	p.I827fs	NSD1_uc003mft.3_Frame_Shift_Del_p.I558fs|NSD1_uc003mfs.1_Frame_Shift_Del_p.I724fs|NSD1_uc011dfx.1_Frame_Shift_Del_p.I475fs	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	827					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TTGGCCAGCATTTCTAAAAGT	0.413			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			13	37	---	---	---	---					
MYO6	4646	broad.mit.edu	37	6	76542650	76542650	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08									Somatic	Phase_I	Capture				Illumina GAIIx	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	g.chr6:76542650delA	uc003pih.1	+	6	762	c.483delA	c.(481-483)ACAfs	p.T161fs	MYO6_uc003pig.1_Frame_Shift_Del_p.T161fs|MYO6_uc003pii.1_Frame_Shift_Del_p.T161fs	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	161	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		CAGAAAATACAAAATTTGTTC	0.303													43	99	---	---	---	---					
