Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CC2D1B	200014	broad.mit.edu	37	1	52819228	52819228	+	Missense_Mutation	SNP	G	C	C			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr1:52819228G>C	uc001ctq.1	-	24	2678	c.2540C>G	c.(2539-2541)ACT>AGT	p.T847S	CC2D1B_uc001ctr.2_Missense_Mutation_p.T387S|CC2D1B_uc001cts.2_Intron	NM_032449	NP_115825	Q5T0F9	C2D1B_HUMAN	coiled-coil and C2 domain containing 1B	847										ovary(2)	2						CCAGTTCTCAGTGACCATCTG	0.592000													15	22					0	0	0.000958276	0	0
DPYD	1806	broad.mit.edu	37	1	98058809	98058809	+	Nonsense_Mutation	SNP	T	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr1:98058809T>A	uc001drv.2	-	10	1230	c.1093A>T	c.(1093-1095)AAA>TAA	p.K365*		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	365					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	ACAAAGCCTTTTCTGAAGACG	0.448000													45	71					0	0	0.000680045	0	0
YY1AP1	55249	broad.mit.edu	37	1	155630357	155630357	+	Silent	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr1:155630357G>A	uc001fln.2	-	11	1506	c.1482C>T	c.(1480-1482)CTC>CTT	p.L494L	YY1AP1_uc001flg.2_Silent_p.L233L|YY1AP1_uc010pgg.1_Silent_p.L333L|YY1AP1_uc010pgh.1_Silent_p.L437L|YY1AP1_uc010pgi.1_Silent_p.L586L|YY1AP1_uc001flh.2_Silent_p.L566L|YY1AP1_uc009wqt.2_Silent_p.L417L|YY1AP1_uc001flk.2_Silent_p.L437L|YY1AP1_uc001fll.2_Silent_p.L448L|YY1AP1_uc009wqv.2_Silent_p.L165L|YY1AP1_uc001flm.2_Silent_p.L437L|YY1AP1_uc001fli.2_Silent_p.L448L|YY1AP1_uc009wqu.2_Silent_p.L281L|YY1AP1_uc001flj.2_Silent_p.L428L|YY1AP1_uc009wqw.2_Silent_p.L417L|YY1AP1_uc001flo.2_Silent_p.L382L|YY1AP1_uc001flp.2_Silent_p.L448L|YY1AP1_uc010pgj.1_3'UTR	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	494					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					GAGGAATCCGGAGCACCATTT	0.552000													37	76					0	0	0.000953801	0	0
RHBG	57127	broad.mit.edu	37	1	156347130	156347130	+	Missense_Mutation	SNP	G	C	C			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr1:156347130G>C	uc010pho.1	+	2	264	c.226G>C	c.(226-228)GGC>CGC	p.G76R	RHBG_uc010phm.1_Intron|RHBG_uc010phn.1_RNA|RHBG_uc001fos.2_Missense_Mutation_p.G7R|RHBG_uc009wrz.2_Missense_Mutation_p.G7R|RHBG_uc001for.2_Missense_Mutation_p.G46R	NM_020407	NP_065140	Q9H310	RHBG_HUMAN	Rhesus blood group, B glycoprotein	76	Helical; (Potential).				transepithelial ammonium transport	anchored to plasma membrane|basolateral plasma membrane|cytoplasmic vesicle membrane|integral to plasma membrane|spectrin-associated cytoskeleton	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			ovary(2)	2	Hepatocellular(266;0.158)					CGTGGGCTTTGGCTTCCTCAT	0.637000													37	81					0	0	0.000270559	0	0
TDRD5	163589	broad.mit.edu	37	1	179621298	179621298	+	Missense_Mutation	SNP	G	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr1:179621298G>T	uc001gnf.1	+	13	2376	c.2126G>T	c.(2125-2127)AGT>ATT	p.S709I	TDRD5_uc010pnp.1_Missense_Mutation_p.S709I|TDRD5_uc001gnh.1_Missense_Mutation_p.S264I	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	709					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CGAAAGATAAGTCCACAGTCA	0.333000													4	59					0.00024832	0.00876947	0.00024832	1	0
ADD3	120	broad.mit.edu	37	10	111860443	111860443	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr10:111860443C>G	uc001kyt.3	+	3	346	c.32C>G	c.(31-33)ACC>AGC	p.T11S	ADD3_uc001kys.3_Missense_Mutation_p.T11S|ADD3_uc001kyu.2_Missense_Mutation_p.T11S|ADD3_uc001kyv.2_Missense_Mutation_p.T11S|ADD3_uc001kyw.2_Missense_Mutation_p.T11S	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	11						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		GGCGTGATTACCACTCCTCCT	0.418000													21	36					0	0	0.000720815	0	0
MRVI1	10335	broad.mit.edu	37	11	10647666	10647666	+	Silent	SNP	C	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr11:10647666C>G	uc010rcc.1	-	9	1601	c.1215G>C	c.(1213-1215)CGG>CGC	p.R405R	MRVI1_uc001miw.2_Silent_p.R396R|MRVI1_uc010rcb.1_Silent_p.R397R|MRVI1_uc009ygb.1_Silent_p.R90R|MRVI1_uc001mix.2_Silent_p.R90R|MRVI1_uc001miz.2_Silent_p.R314R|MRVI1_uc009ygc.1_Silent_p.R314R|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_Silent_p.R90R|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	378					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		CTTTCTGCAGCCGGGGGCCAG	0.647000													9	16					0	0	0.000673444	0	0
HPS5	11234	broad.mit.edu	37	11	18309441	18309441	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr11:18309441G>A	uc001mod.1	-	17	2838	c.2560C>T	c.(2560-2562)CGG>TGG	p.R854W	HPS5_uc001moe.1_Missense_Mutation_p.R740W|HPS5_uc001mof.1_Missense_Mutation_p.R740W	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	854						cytosol				ovary(1)|pancreas(1)|skin(1)	3						ACAACTTACCGGGTAGCATAA	0.363000									Hermansky-Pudlak_syndrome				21	25					0	0	0.000132079	0	0
NPAT	4863	broad.mit.edu	37	11	108032024	108032024	+	Silent	SNP	A	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr11:108032024A>G	uc001pjz.3	-	17	3891	c.3789T>C	c.(3787-3789)AGT>AGC	p.S1263S	NPAT_uc010rvv.1_Silent_p.S319S	NM_002519	NP_002510	Q14207	NPAT_HUMAN	nuclear protein,  ataxia-telangiectasia locus	1263					positive regulation of transcription, DNA-dependent|regulation of transcription involved in G1/S phase of mitotic cell cycle	Cajal body	protein C-terminus binding|protein N-terminus binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			ovary(2)	2		all_cancers(61;2.31e-10)|all_epithelial(67;1.11e-06)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;1.05e-05)|Epithelial(105;3.01e-05)|all cancers(92;0.000816)|Colorectal(284;0.116)		CAGGTAAATCACTACTATCAG	0.443000													51	75					0	0	0.000781405	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790126	133790126	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr11:133790126C>A	uc001qgx.3	-	18	3725	c.3494G>T	c.(3493-3495)GGC>GTC	p.G1165V		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1165	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GGTGTCCAGGCCAAATGTGCT	0.692000													31	51					1.26612e-14	4.72829e-13	0.00058488	1	0
IGSF9B	22997	broad.mit.edu	37	11	133794760	133794760	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr11:133794760C>T	uc001qgx.3	-	15	2305	c.2074G>A	c.(2074-2076)GAT>AAT	p.D692N	IGSF9B_uc001qgy.1_Missense_Mutation_p.D534N	NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	692	Fibronectin type-III 2.|Extracellular (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CTGATCAGATCCTGCATGACG	0.587000													43	91					0	0	0.000781405	0	0
LOC642846	642846	broad.mit.edu	37	12	9453702	9453702	+	RNA	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr12:9453702C>T	uc010sgp.1	+	10		c.1341C>T			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						GGTGGTGCTGCCCTATCAGAT	0.662000													4	6					0	0	0.000602214	0	0
TROAP	10024	broad.mit.edu	37	12	49717751	49717751	+	Missense_Mutation	SNP	A	C	C			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr12:49717751A>C	uc001rtx.3	+	3	435	c.268A>C	c.(268-270)AAC>CAC	p.N90H	TROAP_uc001rtv.2_Missense_Mutation_p.N90H|TROAP_uc001rtw.3_Missense_Mutation_p.N90H|TROAP_uc009zlh.2_Missense_Mutation_p.N90H|TROAP_uc001rty.2_5'Flank	NM_005480	NP_005471	Q12815	TROAP_HUMAN	tastin isoform 1	90					cell adhesion	cytoplasm				ovary(1)	1						TCAGCCTCGGAACCCCTTGGA	0.602000													28	86					0	0	0.000147802	0	0
RDH5	5959	broad.mit.edu	37	12	56118170	56118170	+	Silent	SNP	A	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr12:56118170A>T	uc001shk.2	+	5	981	c.798A>T	c.(796-798)CGA>CGT	p.R266R	RDH5_uc001shl.2_Silent_p.R266R	NM_002905	NP_002896	Q92781	RDH1_HUMAN	retinol dehydrogenase 5 (11-cis and 9-cis)	266					response to stimulus|visual perception	membrane	binding|retinol dehydrogenase activity			ovary(1)	1					NADH(DB00157)|Vitamin A(DB00162)	AGGTGAGCCGATGCCTGGAGC	0.592000											OREG0021908	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	81					0	0	0.000339439	0	0
MBD6	114785	broad.mit.edu	37	12	57918527	57918527	+	Silent	SNP	C	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr12:57918527C>A	uc001soj.1	+	4	362	c.138C>A	c.(136-138)TCC>TCA	p.S46S	MBD6_uc001sok.1_5'Flank|MBD6_uc001sol.1_5'Flank	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	46	MBD.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						AGCTGTCTTCCTTGGAGCAAA	0.572000													39	71					1.03484e-13	3.82066e-12	0.000191422	1	0
WDR66	144406	broad.mit.edu	37	12	122398516	122398516	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr12:122398516A>G	uc009zxk.2	+	14	2301	c.2159A>G	c.(2158-2160)TAC>TGC	p.Y720C		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	720	WD 8.						calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		GTGGCTGTTTACATGCTGGTG	0.398000													3	158					0	0	6.4e-05	0	0
MIR668	768214	broad.mit.edu	37	14	101521660	101521660	+	RNA	SNP	C	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr14:101521660C>G	hsa-mir-668|MI0003761	+			c.66C>G			MIR485_hsa-mir-485|MI0002469_5'Flank|hsa-mir-323b|MI0014206_5'Flank																	0						GGCCCACTACCCAATACTATC	0.562000													20	49					0	0	0.000175454	0	0
UBR1	197131	broad.mit.edu	37	15	43299382	43299382	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr15:43299382C>T	uc001zqq.2	-	30	3376	c.3310G>A	c.(3310-3312)GAA>AAA	p.E1104K		NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1104	RING-type; atypical.				cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		ACCTCCTGTTCTTCTTGGCAA	0.473000													42	77					0	0	0.000680045	0	0
SPG11	80208	broad.mit.edu	37	15	44951365	44951365	+	Silent	SNP	A	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr15:44951365A>T	uc001ztx.2	-	3	610	c.579T>A	c.(577-579)CTT>CTA	p.L193L	SPG11_uc010ueh.1_Silent_p.L193L|SPG11_uc010uei.1_Silent_p.L193L|SPG11_uc001zua.1_Silent_p.L193L	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	193	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		CAGGCAAGGGAAGTGTGAAAC	0.398000													48	88					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	15	102292785	102292785	+	Missense_Mutation	SNP	C	G	G	rs143389223		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr15:102292785C>G	uc010usj.1	+	4	432	c.373C>G	c.(373-375)CAG>GAG	p.Q125E	uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		TGCTGCTTCTCAGAGCTGCTG	0.602000													5	16					0	0	8.12818e-05	0	0
B3GNT9	84752	broad.mit.edu	37	16	67184131	67184131	+	Silent	SNP	G	C	C			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr16:67184131G>C	uc002erf.2	-	2	579	c.258C>G	c.(256-258)CGC>CGG	p.R86R	uc002erg.1_Nonstop_Mutation_p.*178Y	NM_033309	NP_171608	Q6UX72	B3GN9_HUMAN	UDP-GlcNAc:betaGal	86	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0						CGCGCAAATAGCGGGCGAAGT	0.706000													5	9					0	0	0.000602214	0	0
ZFHX3	463	broad.mit.edu	37	16	72992638	72992638	+	Silent	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr16:72992638C>T	uc002fck.2	-	2	2080	c.1407G>A	c.(1405-1407)GAG>GAA	p.E469E	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	469	Poly-Glu.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				ccgcctcttcctcctcctctt	0.313000													7	25					0	0	0.000274275	0	0
OR1E1	8387	broad.mit.edu	37	17	3301701	3301701	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:3301701T>C	uc002fvj.1	-	1	4	c.4A>G	c.(4-6)ATG>GTG	p.M2V		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTTTGTCCCATCATGCTCTGT	0.438000													3	165					0	0	6.4e-05	0	0
GSG2	83903	broad.mit.edu	37	17	3628867	3628868	+	Missense_Mutation	DNP	CG	AT	AT	rs146710070		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:3628867_3628868CG>AT	uc002fwp.2	+	1	1671_1672	c.1638_1639CG>AT	c.(1636-1641)TCCGGT>TCATGT	p.G547C	ITGAE_uc002fwo.3_Intron|ITGAE_uc002fwn.3_5'Flank	NM_031965	NP_114171	Q8TF76	HASP_HUMAN	haspin	547	Protein kinase.				cell cycle|chromatin modification|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity				0						GCCTCTTATCCGGTGAAGTGTG	0.485000													5	125					0	0	6.4e-05	0	0
MYH10	4628	broad.mit.edu	37	17	8416922	8416922	+	Silent	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:8416922C>T	uc002gll.2	-	21	2682	c.2586G>A	c.(2584-2586)TTG>TTA	p.L862L	MYH10_uc002glm.2_Silent_p.L893L|MYH10_uc010cnx.2_Silent_p.L871L	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	862	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						CCTTCACCTTCAACAGCTCTT	0.483000													11	307					0	0	0.00010058	0	0
MPRIP	23164	broad.mit.edu	37	17	17030034	17030034	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:17030034G>A	uc002gqu.1	+	4	342	c.286G>A	c.(286-288)GGC>AGC	p.G96S	MPRIP_uc002gqv.1_Missense_Mutation_p.G96S	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	96	Interaction with F-actin (By similarity).|PH 1.					cytoplasm|cytoskeleton	actin binding				0						CCTTCCTCAGGGCACCATCAA	0.602000													30	72					0	0	0.000279167	0	0
PHF12	57649	broad.mit.edu	37	17	27251080	27251080	+	Missense_Mutation	SNP	T	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:27251080T>A	uc002hdg.1	-	4	1092	c.562A>T	c.(562-564)ATT>TTT	p.I188F	PHF12_uc010wbb.1_Missense_Mutation_p.I170F|PHF12_uc002hdi.1_Missense_Mutation_p.I184F|PHF12_uc002hdj.1_Missense_Mutation_p.I188F|PHF12_uc010crw.1_Intron|uc002hdl.2_5'Flank|PHF12_uc002hdh.1_5'UTR	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	188	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			TCCACGTCAATGATGTCTTCG	0.602000													43	30					0	0	0.000781405	0	0
MED1	5469	broad.mit.edu	37	17	37565701	37565701	+	Missense_Mutation	SNP	G	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:37565701G>T	uc002hrv.3	-	17	2985	c.2773C>A	c.(2773-2775)CAA>AAA	p.Q925K	MED1_uc010wee.1_Missense_Mutation_p.Q753K|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	925	Interaction with ESR1.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		GTGTCGGCTTGGTTATTGCCC	0.438000										HNSCC(31;0.082)			9	260					3.86212e-05	0.0013789	0.000673444	1	0
KRT17	3872	broad.mit.edu	37	17	39777877	39777877	+	Missense_Mutation	SNP	G	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:39777877G>T	uc002hxh.2	-	4	923	c.802C>A	c.(802-804)CGC>AGC	p.R268S	JUP_uc010wfs.1_Intron	NM_000422	NP_000413	Q04695	K1C17_HUMAN	keratin 17	268	Coil 2.|Rod.				epidermis development	cytoplasm|intermediate filament	protein binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2		Breast(137;0.000307)				GCATCCTTGCGGTTCTTCTCT	0.592000									Steatocystoma_Multiplex				6	158					5.18039e-06	0.000187012	0.000157383	1	0
GPATCH8	23131	broad.mit.edu	37	17	42541861	42541862	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:42541861_42541862CC>AA	uc002igw.1	-	3	235_236	c.171_172GG>TT	c.(169-174)CAGGGA>CATTGA	p.57_58QG>H*	GPATCH8_uc002igv.1_5'UTR|GPATCH8_uc010wiz.1_5'UTR	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	57_58	G-patch.					intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		TTTCCCAATCCCTGGCCCAGCT	0.391000													12	557					0	0	6.4e-05	0	0
GJC1	10052	broad.mit.edu	37	17	42882624	42882624	+	Missense_Mutation	SNP	C	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:42882624C>G	uc002ihj.2	-	2	1073	c.562G>C	c.(562-564)GAG>CAG	p.E188Q	GJC1_uc002ihk.2_Missense_Mutation_p.E188Q|GJC1_uc002ihl.2_Missense_Mutation_p.E188Q|GJC1_uc010czx.2_Missense_Mutation_p.E188Q|GJC1_uc010czy.1_Missense_Mutation_p.E49Q	NM_005497	NP_005488	P36383	CXG1_HUMAN	connexin 45	188	Helical; (Potential).				cellular membrane organization|gap junction assembly|muscle contraction|synaptic transmission|transport	connexon complex|integral to membrane					0		Prostate(33;0.0959)				AAACCCACCTCAAACACGGTC	0.493000													109	185					0	0	0.000781405	0	0
SAMD14	201191	broad.mit.edu	37	17	48190273	48190273	+	Missense_Mutation	SNP	T	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:48190273T>G	uc002iqg.2	-	10	1537	c.1238A>C	c.(1237-1239)GAG>GCG	p.E413A	SAMD14_uc002iqd.2_Missense_Mutation_p.E196A|SAMD14_uc002iqe.2_Missense_Mutation_p.E196A|SAMD14_uc002iqf.2_Missense_Mutation_p.E441A	NM_174920	NP_777580	Q8IZD0	SAM14_HUMAN	sterile alpha motif domain containing 14	413	Potential.										0						CTTCTTGGCCTCCTGCTCTCG	0.697000													38	64					0	0	0.000374591	0	0
CACNA1G	8913	broad.mit.edu	37	17	48669448	48669448	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:48669448G>A	uc002irk.1	+	13	3277	c.2905G>A	c.(2905-2907)GCG>ACG	p.A969T	CACNA1G_uc002iri.1_Missense_Mutation_p.A969T|CACNA1G_uc002irj.1_Missense_Mutation_p.A969T|CACNA1G_uc002irl.1_Missense_Mutation_p.A969T|CACNA1G_uc002irm.1_Missense_Mutation_p.A969T|CACNA1G_uc002irn.1_Missense_Mutation_p.A969T|CACNA1G_uc002iro.1_Missense_Mutation_p.A969T|CACNA1G_uc002irp.1_Missense_Mutation_p.A969T|CACNA1G_uc002irq.1_Missense_Mutation_p.A969T|CACNA1G_uc002irr.1_Missense_Mutation_p.A969T|CACNA1G_uc002irs.1_Missense_Mutation_p.A969T|CACNA1G_uc002irt.1_Missense_Mutation_p.A969T|CACNA1G_uc002irv.1_Missense_Mutation_p.A969T|CACNA1G_uc002irw.1_Missense_Mutation_p.A969T|CACNA1G_uc002iru.1_Missense_Mutation_p.A969T|CACNA1G_uc002irx.1_Missense_Mutation_p.A882T|CACNA1G_uc002iry.1_Missense_Mutation_p.A882T|CACNA1G_uc002irz.1_Missense_Mutation_p.A882T|CACNA1G_uc002isa.1_Missense_Mutation_p.A882T|CACNA1G_uc002isb.1_Missense_Mutation_p.A882T|CACNA1G_uc002isc.1_Missense_Mutation_p.A882T|CACNA1G_uc002isd.1_Missense_Mutation_p.A882T|CACNA1G_uc002ise.1_Missense_Mutation_p.A882T|CACNA1G_uc002isf.1_Missense_Mutation_p.A882T|CACNA1G_uc002isg.1_Missense_Mutation_p.A882T|CACNA1G_uc002ish.1_Missense_Mutation_p.A882T|CACNA1G_uc002isi.1_Missense_Mutation_p.A882T	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	969	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	GGGCTTCCAGGCGGAGGTAAC	0.582000													30	42					0	0	0.000491102	0	0
VEZF1	7716	broad.mit.edu	37	17	56060465	56060465	+	Missense_Mutation	SNP	G	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:56060465G>T	uc002ivf.1	-	2	466	c.323C>A	c.(322-324)ACC>AAC	p.T108N	VEZF1_uc010dcn.1_5'UTR	NM_007146	NP_009077	Q14119	VEZF1_HUMAN	zinc finger protein 161	108					cellular defense response|regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						CGTGGTGGGGGTTTTCTTTGG	0.547000													55	70					2.74224e-37	1.07344e-35	0.000781405	1	0
BCAS3	54828	broad.mit.edu	37	17	59067387	59067388	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr17:59067387_59067388GG>TT	uc002iyv.3	+	15	1386_1387	c.1277_1278GG>TT	c.(1276-1278)CGG>CTT	p.R426L	BCAS3_uc010wow.1_Missense_Mutation_p.R213L|BCAS3_uc002iyu.3_Missense_Mutation_p.R426L|BCAS3_uc002iyw.3_Missense_Mutation_p.R422L|BCAS3_uc002iyx.1_Missense_Mutation_p.R241L|BCAS3_uc002iyy.3_Missense_Mutation_p.R197L|BCAS3_uc002iyz.3_5'UTR|BCAS3_uc002iza.3_5'UTR	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	426	WD 3.					nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			AGTACTCTCCGGGGTACTTCCC	0.470000													7	191					0	0	6.4e-05	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555098	44555099	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr18:44555098_44555099GG>TT	uc010xdb.1	-	1	1351_1352	c.1115_1116CC>AA	c.(1114-1116)CCC>CAA	p.P372Q	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	372	Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						ACAGCTGATCGGGCGTCCACCC	0.574000													11	803					0	0	6.4e-05	0	0
DYM	54808	broad.mit.edu	37	18	46645145	46645145	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr18:46645145G>A	uc002ldi.1	-	15	2080	c.1715C>T	c.(1714-1716)TCA>TTA	p.S572L	DYM_uc010xdf.1_Missense_Mutation_p.S382L|DYM_uc002ldj.3_Missense_Mutation_p.S394L	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	572						Golgi apparatus					0						ATCCTGAAATGAAGGATGAGT	0.353000													20	42					0	0	0.000175454	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2408353	2408353	+	Splice_Site	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr19:2408353G>A	uc010xgx.1	+	7	741	c.741_splice	c.e7-1	p.E247_splice	TMPRSS9_uc002lvv.1_Splice_Site_p.E281_splice	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9						proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCTCCTGCAGGTTCCAAGAC	0.453000													5	43					0	0	8.12818e-05	0	0
SSBP4	170463	broad.mit.edu	37	19	18538728	18538728	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr19:18538728G>A	uc002niy.2	+	4	453	c.215G>A	c.(214-216)TGC>TAC	p.C72Y	SSBP4_uc010ebp.2_Missense_Mutation_p.C72Y|SSBP4_uc002niz.2_Missense_Mutation_p.C72Y	NM_032627	NP_116016	Q9BWG4	SSBP4_HUMAN	single stranded DNA binding protein 4 isoform a	72						nucleus	single-stranded DNA binding				0						GACCTGTACTGCGCGGCGCCT	0.667000													33	51					0	0	0.000953801	0	0
SLC25A42	284439	broad.mit.edu	37	19	19218750	19218750	+	Missense_Mutation	SNP	G	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr19:19218750G>T	uc002nlf.1	+	7	696	c.545G>T	c.(544-546)GGG>GTG	p.G182V		NM_178526	NP_848621	Q86VD7	S2542_HUMAN	solute carrier family 25, member 42	182	Solcar 2.				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.4e-06)|Epithelial(12;0.000497)			AGAGAAGAGGGGCTGAAGACT	0.572000													46	74					2.47872e-24	9.47456e-23	0.000509022	1	0
ZNF254	9534	broad.mit.edu	37	19	24310237	24310237	+	Nonsense_Mutation	SNP	A	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr19:24310237A>T	uc002nru.2	+	4	1569	c.1435A>T	c.(1435-1437)AGA>TGA	p.R479*	ZNF254_uc010xrk.1_Nonsense_Mutation_p.R394*	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	479	C2H2-type 10.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				AACCCTAACTAGACATAAGAG	0.388000													15	47					0	0	0.00074312	0	0
SPINT2	10653	broad.mit.edu	37	19	38774304	38774304	+	Silent	SNP	G	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr19:38774304G>T	uc002ohr.1	+	2	475	c.144G>T	c.(142-144)CGG>CGT	p.R48R	SPINT2_uc002ohs.1_Intron	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	48	Extracellular (Potential).|BPTI/Kunitz inhibitor 1.	Reactive bond (By similarity).			cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GCAGATGCCGGGCCTCCATGC	0.562000													46	110					4.49093e-37	1.73703e-35	0.000781405	1	0
CYP2S1	29785	broad.mit.edu	37	19	41712375	41712375	+	Silent	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr19:41712375C>T	uc002opw.2	+	9	1552	c.1497C>T	c.(1495-1497)TCC>TCT	p.S499S	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Silent_p.S224S	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	499					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						ACCTTCACTCCACCACGCAGA	0.607000													8	76					0	0	0.000157383	0	0
ZNF471	57573	broad.mit.edu	37	19	57037032	57037032	+	Silent	SNP	A	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr19:57037032A>G	uc002qnh.2	+	5	1729	c.1596A>G	c.(1594-1596)CAA>CAG	p.Q532Q		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	532	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		ACCTTGCCCAACATCAGAAAA	0.398000													34	65					0	0	0.00058488	0	0
ADAM17	6868	broad.mit.edu	37	2	9645412	9645412	+	Missense_Mutation	SNP	T	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:9645412T>G	uc002qzu.2	-	12	1610	c.1427A>C	c.(1426-1428)AAA>ACA	p.K476T	ADAM17_uc010ewy.2_Missense_Mutation_p.K476T|ADAM17_uc010ewz.2_Intron	NM_003183	NP_003174	P78536	ADA17_HUMAN	a disintegrin and metalloprotease domain 17	476	Disintegrin.|Extracellular (Potential).				B cell differentiation|cell adhesion mediated by integrin|epidermal growth factor receptor signaling pathway|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|germinal center formation|membrane protein intracellular domain proteolysis|negative regulation of interleukin-8 production|nerve growth factor receptor signaling pathway|Notch signaling pathway|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of chemokine production|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of protein phosphorylation|positive regulation of T cell chemotaxis|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of mast cell apoptosis|response to drug|response to high density lipoprotein particle stimulus|response to hypoxia|response to lipopolysaccharide|spleen development|T cell differentiation in thymus|wound healing, spreading of epidermal cells	actin cytoskeleton|apical plasma membrane|cell surface|cytoplasm|integral to plasma membrane|membrane raft	integrin binding|interleukin-6 receptor binding|metalloendopeptidase activity|PDZ domain binding|SH3 domain binding|zinc ion binding			lung(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.225)		CCCACAAACTTTATTGCTGCG	0.438000													63	72					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21260848	21260848	+	Silent	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:21260848G>A	uc002red.2	-	5	647	c.519C>T	c.(517-519)GCC>GCT	p.A173A		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	173	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACACTTGCTTGGCTTCTTCTG	0.458000													79	58					0	0	0.000781405	0	0
ATAD2B	54454	broad.mit.edu	37	2	24051776	24051776	+	Missense_Mutation	SNP	C	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:24051776C>A	uc002rek.3	-	15	2056	c.1762G>T	c.(1762-1764)GAC>TAC	p.D588Y	ATAD2B_uc010yki.1_RNA|ATAD2B_uc002rej.3_5'UTR	NM_017552	NP_060022	Q9ULI0	ATD2B_HUMAN	ATPase family, AAA domain containing 2B	588							ATP binding|nucleoside-triphosphatase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGATTCCAGTCCCTGGTATGG	0.333000													51	62					1.57914e-17	5.96586e-16	0.000781405	1	0
AGBL5	60509	broad.mit.edu	37	2	27291539	27291539	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:27291539A>G	uc002rie.2	+	13	2499	c.2282A>G	c.(2281-2283)GAG>GGG	p.E761G	AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	761					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GACAAACCAGAGGCTGTCATG	0.512000													42	93					0	0	0.000589545	0	0
AFF3	3899	broad.mit.edu	37	2	100210626	100210627	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:100210626_100210627CG>AT	uc002tag.2	-	14	1732_1733	c.1496_1497CG>AT	c.(1495-1497)CCG>CAT	p.P499H	AFF3_uc002taf.2_Missense_Mutation_p.P524H|AFF3_uc010fiq.1_Missense_Mutation_p.P499H|AFF3_uc010yvr.1_Missense_Mutation_p.P652H|AFF3_uc002tah.1_Missense_Mutation_p.P524H	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	499					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CCTCTTTCACCGGGTTGTAGTA	0.515000													10	311					0	0	6.4e-05	0	0
TNS1	7145	broad.mit.edu	37	2	218713795	218713795	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:218713795G>A	uc002vgt.2	-	17	1468	c.1070C>T	c.(1069-1071)ACG>ATG	p.T357M	TNS1_uc002vgr.2_Missense_Mutation_p.T357M|TNS1_uc002vgs.2_Missense_Mutation_p.T357M|TNS1_uc010zjv.1_Missense_Mutation_p.T357M|TNS1_uc010fvj.1_Missense_Mutation_p.T425M|TNS1_uc010fvk.1_Missense_Mutation_p.T482M|TNS1_uc010fvi.1_Missense_Mutation_p.T44M	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	357						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		TGGCCCCTGCGTGTGTCCCAC	0.577000													34	131					0	0	0.000491102	0	0
UGT1A5	54579	broad.mit.edu	37	2	234622277	234622277	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:234622277A>G	uc002vuw.2	+	1	640	c.640A>G	c.(640-642)ATG>GTG	p.M214V	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Missense_Mutation_p.M214V	NM_019078	NP_061951	P35504	UD15_HUMAN	UDP glycosyltransferase 1 family, polypeptide A5	214					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;4.51e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000523)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.00645)		GGTCAAGAACATGCTCTACCC	0.483000													175	149					0	0	0.000781405	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20491913	20491913	+	Nonsense_Mutation	SNP	A	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr20:20491913A>T	uc002wrz.2	-	33	5056	c.4913T>A	c.(4912-4914)TTG>TAG	p.L1638*	RALGAPA2_uc010gcx.2_Nonsense_Mutation_p.L1342*|RALGAPA2_uc010zsg.1_Nonsense_Mutation_p.L1086*|RALGAPA2_uc002wsa.1_Nonsense_Mutation_p.L410*	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1638	Rap-GAP.				activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						GCGGGAGTCCAAATTTTTCAG	0.328000													9	9					0	0	0.000673444	0	0
SSTR4	6754	broad.mit.edu	37	20	23017198	23017198	+	Missense_Mutation	SNP	A	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr20:23017198A>T	uc002wsr.2	+	1	1142	c.1078A>T	c.(1078-1080)ATG>TTG	p.M360L		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	360	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GGCAGGGTGCATGTGCCCCCC	0.657000													6	90					0	0	3.59834e-05	0	0
C20orf70	140683	broad.mit.edu	37	20	31761923	31761923	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr20:31761923C>T	uc002wyo.1	+	4	412	c.341C>T	c.(340-342)GCT>GTT	p.A114V		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	114						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						GATGTCAAAGCTGAACCGATC	0.453000													27	75					0	0	0.000491102	0	0
MX1	4599	broad.mit.edu	37	21	42807881	42807881	+	Missense_Mutation	SNP	G	A	A	rs150271063		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr21:42807881G>A	uc002yzh.2	+	8	1170	c.223G>A	c.(223-225)GTC>ATC	p.V75I	MX1_uc002yzi.2_Missense_Mutation_p.V75I|MX1_uc010goq.2_Missense_Mutation_p.V75I	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	75					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				AGCCATCGCCGTCATCGGGGA	0.592000													29	53					0	0	0.000339439	0	0
SFMBT1	51460	broad.mit.edu	37	3	53003137	53003138	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr3:53003137_53003138CC>AA	uc003dgf.2	-	3	576_577	c.7_8GG>TT	c.(7-9)GGG>TTG	p.G3L	SFMBT1_uc003dgg.2_Missense_Mutation_p.G3L|SFMBT1_uc003dgh.2_Missense_Mutation_p.G3L	NM_001005159	NP_001005159	Q9UHJ3	SMBT1_HUMAN	Scm-like with four mbt domains 1	3					regulation of transcription, DNA-dependent	nucleus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.91e-05)|Kidney(197;0.000644)|KIRC - Kidney renal clear cell carcinoma(197;0.000792)|OV - Ovarian serous cystadenocarcinoma(275;0.113)		CTGCTGCTCCCCGTTCATTTCC	0.297000													9	332					0	0	6.4e-05	0	0
SYNPR	132204	broad.mit.edu	37	3	63466530	63466530	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr3:63466530C>T	uc003dlq.2	+	2	416	c.47C>T	c.(46-48)GCA>GTA	p.A16V	SYNPR_uc003dlp.2_Missense_Mutation_p.A36V|SYNPR_uc011bfk.1_Intron|SYNPR_uc011bfl.1_RNA|SYNPR_uc010hnt.2_Missense_Mutation_p.A25V|SYNPR_uc011bfm.1_RNA	NM_144642	NP_653243	Q8TBG9	SYNPR_HUMAN	synaptoporin isoform 2	16	MARVEL.|Helical; (Potential).					cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	transporter activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000918)|KIRC - Kidney renal clear cell carcinoma(15;0.0658)|Kidney(15;0.0904)		TTTGCATTTGCAACATGCGGT	0.433000													78	121					0	0	0.000781405	0	0
ROBO2	6092	broad.mit.edu	37	3	77542437	77542437	+	Missense_Mutation	SNP	T	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr3:77542437T>G	uc003dpy.3	+	5	1353	c.710T>G	c.(709-711)CTG>CGG	p.L237R	ROBO2_uc003dpz.2_Missense_Mutation_p.L237R|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.L237R	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	237	Ig-like C2-type 3.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CAGGTGGTACTGGAGGAAGAA	0.403000													5	78					0	0	3.59834e-05	0	0
PLOD2	5352	broad.mit.edu	37	3	145806381	145806381	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr3:145806381G>A	uc003evs.1	-	9	1503	c.997C>T	c.(997-999)CAT>TAT	p.H333Y	PLOD2_uc003evq.1_5'Flank|PLOD2_uc011bnm.1_Missense_Mutation_p.H278Y|PLOD2_uc003evr.1_Missense_Mutation_p.H333Y	NM_000935	NP_000926	O00469	PLOD2_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	333					protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2					Vitamin C(DB00126)	ACTTTGTTATGAATAAAAAGT	0.294000													8	20					0	0	0.000157383	0	0
P2RY1	5028	broad.mit.edu	37	3	152553966	152553966	+	Missense_Mutation	SNP	A	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr3:152553966A>G	uc003ezq.2	+	1	1231	c.395A>G	c.(394-396)CAT>CGT	p.H132R		NM_002563	NP_002554	P47900	P2RY1_HUMAN	purinergic receptor P2Y1	132	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0628)|Lung(72;0.11)			TTCATCTTTCATGTGAACCTC	0.507000													29	56					0	0	0.000279167	0	0
SH3TC1	54436	broad.mit.edu	37	4	8230107	8230107	+	Silent	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr4:8230107C>T	uc003gkv.3	+	12	2787	c.2686C>T	c.(2686-2688)CTG>TTG	p.L896L	SH3TC1_uc003gkw.3_Silent_p.L820L|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_5'Flank	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	896	TPR 5.						binding			large_intestine(2)|pancreas(1)	3						GGCTCGGGACCTGGGCCAGCA	0.692000													51	46					0	0	0.000781405	0	0
LAP3	51056	broad.mit.edu	37	4	17586652	17586653	+	Missense_Mutation	DNP	AC	GA	GA			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr4:17586652_17586653AC>GA	uc003gph.1	+	6	759_760	c.597_598AC>GA	c.(595-600)GCACGC>GCGAGC	p.R200S	LAP3_uc010ieg.2_3'UTR	NM_015907	NP_056991	P28838	AMPL_HUMAN	leucine aminopeptidase 3	200					proteolysis	nucleus	aminopeptidase activity|magnesium ion binding|manganese ion binding|metalloexopeptidase activity|zinc ion binding				0						AGAACTTGGCACGCCAATTGAT	0.475000													16	59					0	0	6.4e-05	0	0
DDX60L	91351	broad.mit.edu	37	4	169317122	169317122	+	Silent	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr4:169317122C>T	uc003irq.3	-	27	3866	c.3645G>A	c.(3643-3645)AGG>AGA	p.R1215R	DDX60L_uc003irr.1_Silent_p.R1216R|DDX60L_uc003irs.1_Silent_p.R910R	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1215	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		AGTCTTTATTCCTGGTAATTT	0.343000													49	52					0	0	0.000781405	0	0
WDR70	55100	broad.mit.edu	37	5	37381726	37381726	+	Silent	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr5:37381726C>T	uc003jkv.2	+	3	172	c.114C>T	c.(112-114)GAC>GAT	p.D38D	WDR70_uc010iva.1_Silent_p.D38D	NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	38										ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GCACATTTGACTTGGAAGCAA	0.378000													59	120					0	0	0.000781405	0	0
NDFIP1	80762	broad.mit.edu	37	5	141524143	141524144	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr5:141524143_141524144CC>AG	uc003lmi.3	+	7	786_787	c.570_571CC>AG	c.(568-573)CTCCTG>CTAGTG	p.L191V	NDFIP1_uc003lmj.1_Intron	NM_030571	NP_085048	Q9BT67	NFIP1_HUMAN	Nedd4 family interacting protein 1	191	Helical; (Potential).				cellular iron ion homeostasis|negative regulation of gene expression|negative regulation of protein transport|negative regulation of transporter activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein ubiquitination	endosome membrane|extracellular region|Golgi membrane|integral to membrane|perinuclear region of cytoplasm	signal transducer activity				0		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAGGCTTTCTCCTGTTTCTCAG	0.356000													41	119					0	0	6.4e-05	0	0
ABCA13	154664	broad.mit.edu	37	7	48506568	48506568	+	Silent	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr7:48506568C>T	uc003toq.2	+	44	12856	c.12831C>T	c.(12829-12831)AAC>AAT	p.N4277N	ABCA13_uc010kys.1_Silent_p.N1352N|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Intron	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4277					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GGGGCGACAACTTGGACCTCA	0.498000													71	125					0	0	0.000781405	0	0
ZNF680	340252	broad.mit.edu	37	7	63982808	63982808	+	Missense_Mutation	SNP	T	C	C			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr7:63982808T>C	uc003tta.2	-	4	497	c.324A>G	c.(322-324)ATA>ATG	p.I108M	ZNF680_uc010kzr.2_Missense_Mutation_p.I35M	NM_178558	NP_848653	Q8NEM1	ZN680_HUMAN	zinc finger protein 680 isoform 1	108					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.118)|all_lung(88;0.243)				ATCCTCTCAGTATCACTTTTT	0.318000													5	124					0	0	0.000602214	0	0
SLC13A1	6561	broad.mit.edu	37	7	122765636	122765636	+	Silent	SNP	A	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr7:122765636A>G	uc003vkm.2	-	11	1252	c.1227T>C	c.(1225-1227)CCT>CCC	p.P409P	SLC13A1_uc010lks.2_Silent_p.P285P	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	409						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TTTCTCCTGTAGGTGTAGTTT	0.368000													127	192					0	0	0.000781405	0	0
AKR1B15	441282	broad.mit.edu	37	7	134260255	134260255	+	Missense_Mutation	SNP	G	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr7:134260255G>T	uc011kpr.1	+	7	896	c.597G>T	c.(595-597)TTG>TTT	p.L199F	AKR1B15_uc011kps.1_Missense_Mutation_p.L171F	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	199							oxidoreductase activity			ovary(1)	1						AGAGGCTCTTGAACAAACCTG	0.463000													83	137					5.01443e-46	1.98681e-44	0.000781405	1	0
OXR1	55074	broad.mit.edu	37	8	107718929	107718929	+	Silent	SNP	T	C	C			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr8:107718929T>C	uc011lht.1	+	8	1282	c.1183T>C	c.(1183-1185)TTA>CTA	p.L395L	OXR1_uc003ymf.2_Silent_p.L394L|OXR1_uc011lhu.1_Silent_p.L387L|OXR1_uc010mcg.2_Intron|OXR1_uc010mch.2_Silent_p.L92L|OXR1_uc003ymg.1_Silent_p.L327L|OXR1_uc003ymi.1_Silent_p.L306L	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	395					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			TCCTGGTCACTTAAGATCTGA	0.368000													17	48					0	0	0.00074312	0	0
COL22A1	169044	broad.mit.edu	37	8	139737673	139737673	+	Missense_Mutation	SNP	C	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr8:139737673C>T	uc003yvd.2	-	24	2597	c.2150G>A	c.(2149-2151)GGA>GAA	p.G717E	COL22A1_uc011ljo.1_Missense_Mutation_p.G17E	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	717	Collagen-like 5.|Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			ACCAGGGGGTCCTGGAGGGCC	0.582000										HNSCC(7;0.00092)			38	72					0	0	0.000270559	0	0
NCBP1	4686	broad.mit.edu	37	9	100412859	100412860	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr9:100412859_100412860CC>AA	uc004axq.2	+	9	1431_1432	c.972_973CC>AA	c.(970-975)TCCCAC>TCAAAC	p.H325N		NM_002486	NP_002477	Q09161	NCBP1_HUMAN	nuclear cap binding protein subunit 1, 80kDa	325					gene silencing by RNA|histone mRNA metabolic process|mRNA 3'-end processing|mRNA capping|mRNA cleavage|mRNA export from nucleus|ncRNA metabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of mRNA 3'-end processing|positive regulation of viral transcription|regulation of translational initiation|spliceosomal snRNP assembly|termination of RNA polymerase II transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytosol|mRNA cap binding complex|nucleoplasm|ribonucleoprotein complex	protein binding|RNA cap binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.158)				TCATTAAGTCCCACTGGAAGGA	0.381000													8	181					0	0	6.4e-05	0	0
SEC16A	9919	broad.mit.edu	37	9	139371469	139371469	+	Missense_Mutation	SNP	G	A	A			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr9:139371469G>A	uc004chx.2	-	3	908	c.599C>T	c.(598-600)GCA>GTA	p.A200V	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Missense_Mutation_p.A200V|SEC16A_uc010nbn.2_Missense_Mutation_p.A200V|SEC16A_uc010nbo.1_Missense_Mutation_p.A200V	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	22					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GGAAGGGGATGCTGCTGGGGT	0.652000													27	30					0	0	0.000147802	0	0
ATP2A1	487	broad.mit.edu	37	16	28913640	28913640	+	Frame_Shift_Del	DEL	C	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr16:28913640delC	uc002dro.1	+	17	2641	c.2457delC	c.(2455-2457)CGCfs	p.R819fs	uc010vct.1_Intron|ATP2A1_uc002drn.1_Frame_Shift_Del_p.R819fs|ATP2A1_uc002drp.1_Frame_Shift_Del_p.R694fs	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	819	Cytoplasmic (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TCATGGACCGCCCCCCCCGGA	0.657													8	131	---	---	---	---					
ZFHX3	463	broad.mit.edu	37	16	72992645	72992647	+	In_Frame_Del	DEL	TCT	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr16:72992645_72992647delTCT	uc002fck.2	-	2	2071_2073	c.1398_1400delAGA	c.(1396-1401)GAAGAG>GAG	p.466_467EE>E	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	466_467	Poly-Glu.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				ttcctcctcctcttcctcctccg	0.315													7	31	---	---	---	---					
MYCN	4613	broad.mit.edu	37	2	16082320	16082321	+	Frame_Shift_Ins	INS	-	G	G			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:16082320_16082321insG	uc002rci.2	+	2	434_435	c.134_135insG	c.(133-135)CCGfs	p.P45fs	MYCNOS_uc002rch.1_5'Flank|MYCN_uc010yjr.1_Frame_Shift_Ins_p.P37fs	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	45					regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			TCGACCCCCCCGGGGGAGGACA	0.644			A		neuroblastoma								23	29	---	---	---	---					
ITSN2	50618	broad.mit.edu	37	2	24509153	24509155	+	In_Frame_Del	DEL	TTC	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:24509153_24509155delTTC	uc002rfe.2	-	16	2047_2049	c.1789_1791delGAA	c.(1789-1791)GAAdel	p.E597del	ITSN2_uc002rff.2_In_Frame_Del_p.E597del|ITSN2_uc002rfg.2_In_Frame_Del_p.E597del|ITSN2_uc010eyd.2_In_Frame_Del_p.E622del	NM_006277	NP_006268	Q9NZM3	ITSN2_HUMAN	intersectin 2 isoform 1	597	Potential.				endocytosis|regulation of Rho protein signal transduction	cytoplasm	calcium ion binding|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			kidney(2)|ovary(1)|central_nervous_system(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CATCTAACTGTTCTTTAAGTCTT	0.286													24	97	---	---	---	---					
UBR3	130507	broad.mit.edu	37	2	170843280	170843281	+	Frame_Shift_Ins	INS	-	T	T			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:170843280_170843281insT	uc010zdi.1	+	25	3760_3761	c.3760_3761insT	c.(3760-3762)GTTfs	p.V1254fs	UBR3_uc002ufr.3_RNA|UBR3_uc010fqa.2_Frame_Shift_Ins_p.V75fs|UBR3_uc002uft.3_Frame_Shift_Ins_p.V107fs	NM_172070	NP_742067	Q6ZT12	UBR3_HUMAN	E3 ubiquitin-protein ligase UBR3	1254					sensory perception of smell|suckling behavior|ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0						TACTGGATTAGTTGTACTGTTA	0.396													32	105	---	---	---	---					
NDUFS1	4719	broad.mit.edu	37	2	207006722	207006724	+	In_Frame_Del	DEL	AGA	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:207006722_207006724delAGA	uc002vbe.2	-	12	1330_1332	c.1203_1205delTCT	c.(1201-1206)CTTCTG>CTG	p.401_402LL>L	NDUFS1_uc010ziq.1_In_Frame_Del_p.415_416LL>L|NDUFS1_uc010zir.1_In_Frame_Del_p.365_366LL>L|NDUFS1_uc010zis.1_In_Frame_Del_p.344_345LL>L|NDUFS1_uc010zit.1_In_Frame_Del_p.290_291LL>L|NDUFS1_uc010ziu.1_In_Frame_Del_p.285_286LL>L	NM_005006	NP_004997	P28331	NDUS1_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 1,	401_402					apoptosis|ATP metabolic process|mitochondrial electron transport, NADH to ubiquinone|reactive oxygen species metabolic process|regulation of mitochondrial membrane potential|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	2 iron, 2 sulfur cluster binding|4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|NADH dehydrogenase (ubiquinone) activity|protein binding			ovary(1)	1					NADH(DB00157)	TGTACCAACCAGAAGAACAACAT	0.320													21	117	---	---	---	---					
LRRFIP1	9208	broad.mit.edu	37	2	238672176	238672176	+	Frame_Shift_Del	DEL	A	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr2:238672176delA	uc002vxe.2	+	11	2112	c.1820delA	c.(1819-1821)GAAfs	p.E607fs	LRRFIP1_uc002vxc.2_Intron|LRRFIP1_uc010znm.1_Intron|LRRFIP1_uc002vxd.2_Frame_Shift_Del_p.E583fs|LRRFIP1_uc002vxf.2_Frame_Shift_Del_p.E551fs	NM_001137552	NP_001131024	Q32MZ4	LRRF1_HUMAN	leucine rich repeat (in FLII) interacting	607					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|cytoskeleton|nucleus	DNA binding|double-stranded RNA binding|protein binding			breast(3)	3		Breast(86;0.00257)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;9.75e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.01e-10)|Kidney(56;4.85e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.31e-07)|BRCA - Breast invasive adenocarcinoma(100;0.000151)|Lung(119;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0325)|COAD - Colon adenocarcinoma(134;0.228)		GAAATTAAGGAAGAAGAGCAG	0.353													8	36	---	---	---	---					
TOPBP1	11073	broad.mit.edu	37	3	133329894	133329895	+	Frame_Shift_Ins	INS	-	CT	CT			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr3:133329894_133329895insCT	uc003eps.2	-	25	4258_4259	c.4126_4127insAG	c.(4126-4128)AGAfs	p.R1376fs		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	1376					DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						TTTTCTCCATCTCATTGCTGCA	0.356								Other_conserved_DNA_damage_response_genes					88	156	---	---	---	---					
MGAM	8972	broad.mit.edu	37	7	141794622	141794622	+	Frame_Shift_Del	DEL	T	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr7:141794622delT	uc003vwy.2	+	40	4783	c.4729delT	c.(4729-4731)TTTfs	p.F1577fs		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1577	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCTGGGGGCCTTTTACCCCTT	0.493													7	130	---	---	---	---					
TPD52	7163	broad.mit.edu	37	8	80963849	80963851	+	In_Frame_Del	DEL	GAT	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr8:80963849_80963851delGAT	uc003ybr.1	-	4	739_741	c.417_419delATC	c.(415-420)ACATCT>ACT	p.S140del	TPD52_uc010lzr.2_RNA|TPD52_uc010lzs.1_RNA|TPD52_uc003ybs.1_In_Frame_Del_p.S100del|TPD52_uc003ybt.1_In_Frame_Del_p.S100del|TPD52_uc003ybq.1_RNA|TPD52_uc003ybu.1_RNA	NM_001025252	NP_001020423	P55327	TPD52_HUMAN	tumor protein D52 isoform 1	140					anatomical structure morphogenesis|B cell differentiation|secretion	endoplasmic reticulum|perinuclear region of cytoplasm	calcium ion binding|protein heterodimerization activity|protein homodimerization activity			ovary(1)	1	all_epithelial(4;1.13e-09)|Lung NSC(7;9.71e-07)|all_lung(9;3.75e-06)	Lung NSC(129;3.55e-06)|all_lung(136;1.53e-05)|Acute lymphoblastic leukemia(644;0.158)	BRCA - Breast invasive adenocarcinoma(6;0.00181)|Epithelial(68;0.0149)|all cancers(69;0.0612)			TAAGGTTTCAGATGTCTTCTTGT	0.404													26	49	---	---	---	---					
ZNF658	26149	broad.mit.edu	37	9	40772391	40772392	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr9:40772391_40772392delCT	uc004abs.2	-	5	3035_3036	c.2883_2884delAG	c.(2881-2886)ACAGGGfs	p.T961fs	ZNF658_uc010mmm.1_Intron|ZNF658_uc010mmn.1_Frame_Shift_Del_p.T961fs	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	961_962					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		GATTTCTCCCCTGTGTGAATTC	0.436													8	153	---	---	---	---					
C9orf86	55684	broad.mit.edu	37	9	139734633	139734635	+	In_Frame_Del	DEL	AGA	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chr9:139734633_139734635delAGA	uc004cji.1	+	14	2226_2228	c.1958_1960delAGA	c.(1957-1962)GAGAAG>GAG	p.K660del	C9orf86_uc004cjj.1_In_Frame_Del_p.K661del|C9orf86_uc004cjk.1_RNA|C9orf86_uc010nbr.1_Intron|C9orf86_uc004cjl.1_RNA|C9orf86_uc010nbs.1_In_Frame_Del_p.K545del|C9orf86_uc004cjn.1_In_Frame_Del_p.K454del	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	660	Interaction with CDKN2A.|Lys-rich.				small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		CCCTCTaaggagaagaagaagaa	0.532													7	60	---	---	---	---					
ZNF185	7739	broad.mit.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	-	-			TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08									Somatic	Phase_I	Capture				Illumina GAIIx	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	g.chrX:152087570_152087572delGAG	uc010ntv.1	+	7	512_514	c.475_477delGAG	c.(475-477)GAGdel	p.E165del	ZNF185_uc011myg.1_In_Frame_Del_p.E165del|ZNF185_uc011myh.1_In_Frame_Del_p.E165del|ZNF185_uc011myi.1_In_Frame_Del_p.E165del|ZNF185_uc011myj.1_In_Frame_Del_p.E165del|ZNF185_uc011myk.1_In_Frame_Del_p.E165del|ZNF185_uc004fgw.3_In_Frame_Del_p.E30del|ZNF185_uc004fgu.2_5'UTR|ZNF185_uc004fgv.2_5'Flank	NM_007150	NP_009081	O15231	ZN185_HUMAN	zinc finger protein 185	165	Poly-Glu.					cytoplasm|cytoskeleton|focal adhesion	zinc ion binding			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGGACACCgaggaggaggagg	0.522													7	26	---	---	---	---					
