Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM16	63976	broad.mit.edu	37	1	3334451	3334451	+	Silent	SNP	C	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:3334451C>T	uc001akf.2	+	11	2831	c.2751C>T	c.(2749-2751)GAC>GAT	p.D917D	PRDM16_uc001akc.2_Silent_p.D916D|PRDM16_uc001akd.2_Silent_p.D916D|PRDM16_uc001ake.2_Silent_p.D917D|PRDM16_uc009vlh.2_Silent_p.D617D	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	917	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TGAAGGCGGACTCGGGCAGCT	0.602000			T	EVI1	MDS|AML								49	162					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19176018	19176018	+	Missense_Mutation	SNP	G	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:19176018G>T	uc001bba.1	-	4	1285	c.1284C>A	c.(1282-1284)AAC>AAA	p.N428K		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	428	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	GGAGAGTGAAGTTGACCTTCC	0.552000													14	65					9.05144e-12	9.90001e-12	1	1	0
ALDH4A1	8659	broad.mit.edu	37	1	19201049	19201049	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:19201049A>G	uc001bbb.2	-	14	1763	c.1487T>C	c.(1486-1488)GTG>GCG	p.V496A	ALDH4A1_uc010ocu.1_Missense_Mutation_p.V436A|ALDH4A1_uc001bbc.2_Missense_Mutation_p.V496A	NM_170726	NP_733844	P30038	AL4A1_HUMAN	aldehyde dehydrogenase 4A1 isoform a precursor	496					proline biosynthetic process|proline catabolic process	mitochondrial matrix	1-pyrroline-5-carboxylate dehydrogenase activity|aldehyde dehydrogenase (NAD) activity|electron carrier activity				0		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00479)|BRCA - Breast invasive adenocarcinoma(304;3.67e-05)|Kidney(64;0.000182)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	NADH(DB00157)	ATTCCTCAGCACCTTTGTGGC	0.512000													40	144					0	0	1	0	0
ARID1A	8289	broad.mit.edu	37	1	27106580	27106580	+	Missense_Mutation	SNP	T	C	C			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:27106580T>C	uc001bmv.1	+	20	6564	c.6191T>C	c.(6190-6192)CTC>CCC	p.L2064P	ARID1A_uc001bmu.1_Missense_Mutation_p.L1847P|ARID1A_uc001bmx.1_Missense_Mutation_p.L910P|ARID1A_uc009vsm.1_Missense_Mutation_p.L392P|ARID1A_uc009vsn.1_Missense_Mutation_p.L306P	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	2064					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		TTGGTTACACTCGCCAACATC	0.557000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								46	130					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047804	42047804	+	Missense_Mutation	SNP	G	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:42047804G>A	uc001cgz.3	-	4	3878	c.2665C>T	c.(2665-2667)CGC>TGC	p.R889C	HIVEP3_uc001cha.3_Missense_Mutation_p.R889C|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	889	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GTCTGGCTGCGCTGGGGCCAT	0.597000													47	150					0	0	1	0	0
FNBP1L	54874	broad.mit.edu	37	1	94009756	94009756	+	Silent	SNP	G	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:94009756G>A	uc001dpw.2	+	10	1083	c.1083G>A	c.(1081-1083)CAG>CAA	p.Q361Q	FNBP1L_uc001dpv.2_Silent_p.Q361Q|FNBP1L_uc010otk.1_Silent_p.Q239Q|FNBP1L_uc010otl.1_5'UTR	NM_001024948	NP_001020119	Q5T0N5	FBP1L_HUMAN	formin binding protein 1-like isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	lipid binding				0		all_lung(203;0.00206)|Lung NSC(277;0.00902)|Melanoma(281;0.155)		all cancers(265;0.00666)|GBM - Glioblastoma multiforme(16;0.0378)|Epithelial(280;0.111)		GAGAACTACAGAAAGAATCAG	0.373000													9	24					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152277075	152277075	+	Missense_Mutation	SNP	C	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:152277075C>A	uc001ezu.1	-	3	10323	c.10287G>T	c.(10285-10287)GAG>GAT	p.E3429D		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3429	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTCCTGACCCTCTTGGGACG	0.612000									Ichthyosis				144	628					1.78034e-107	2.04302e-107	1	1	0
CEP350	9857	broad.mit.edu	37	1	180047678	180047678	+	Missense_Mutation	SNP	A	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:180047678A>T	uc001gnt.2	+	29	6231	c.5848A>T	c.(5848-5850)AGC>TGC	p.S1950C	CEP350_uc009wxl.2_Missense_Mutation_p.S1949C|CEP350_uc001gnv.2_Missense_Mutation_p.S85C	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1950						centrosome|nucleus|spindle				ovary(4)	4						AGAATTAGGCAGCCCTGCTGT	0.433000													7	26					0	0	1	0	0
DHX9	1660	broad.mit.edu	37	1	182812436	182812436	+	Missense_Mutation	SNP	T	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:182812436T>G	uc001gpr.2	+	3	282	c.119T>G	c.(118-120)GTG>GGG	p.V40G	DHX9_uc001gps.2_5'UTR	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	40	DRBM 1.|Interaction with CREBBP.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						AAGGTTCAGGTGGAAGGTTAT	0.333000													9	32					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237617770	237617770	+	Missense_Mutation	SNP	G	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr1:237617770G>T	uc001hyl.1	+	15	1492	c.1372G>T	c.(1372-1374)GAT>TAT	p.D458Y		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	458	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAGTCTGCAGGATCTCATTGG	0.463000													18	55					7.07596e-05	7.28408e-05	1	1	0
ST8SIA6	338596	broad.mit.edu	37	10	17495608	17495608	+	Silent	SNP	C	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr10:17495608C>T	uc001ipd.2	-	2	150	c.150G>A	c.(148-150)GCG>GCA	p.A50A	ST8SIA6_uc010qce.1_RNA	NM_001004470	NP_001004470	P61647	SIA8F_HUMAN	ST8 alpha-N-acetyl-neuraminide	50	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(1)	1						GCGTCCTCAGCGCTGCGGGGG	0.706000													6	10					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129910454	129910454	+	Missense_Mutation	SNP	T	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr10:129910454T>G	uc001lke.2	-	9	2107	c.1912A>C	c.(1912-1914)ATT>CTT	p.I638L	MKI67_uc001lkf.2_Missense_Mutation_p.I278L|MKI67_uc009yav.1_Missense_Mutation_p.I213L|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	638					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				ATCTGTAAAATATCATGTTGA	0.398000													29	83					0	0	1	0	0
ANAPC5	51433	broad.mit.edu	37	12	121766167	121766168	+	Missense_Mutation	DNP	TC	CA	CA			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr12:121766167_121766168TC>CA	uc001uag.2	-	10	1377_1378	c.1255_1256GA>TG	c.(1255-1257)GAT>TGT	p.D419C	ANAPC5_uc010szu.1_Missense_Mutation_p.D85C|ANAPC5_uc001uae.2_5'UTR|ANAPC5_uc010szv.1_Missense_Mutation_p.D21C|ANAPC5_uc001uaf.2_RNA|ANAPC5_uc001uah.2_Missense_Mutation_p.D307C|ANAPC5_uc001uai.1_Missense_Mutation_p.D21C	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	419					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GATGCTGATATCGATGAGCTCT	0.545000													13	63					0	0	1	0	0
MCF2L	23263	broad.mit.edu	37	13	113741757	113741757	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr13:113741757A>G	uc001vsu.2	+	22	2775	c.2753A>G	c.(2752-2754)AAG>AGG	p.K918R	MCF2L_uc001vsq.2_Missense_Mutation_p.K918R|MCF2L_uc010tjr.1_Missense_Mutation_p.K861R|MCF2L_uc001vsr.2_Missense_Mutation_p.K865R|MCF2L_uc001vss.3_Missense_Mutation_p.K859R|MCF2L_uc010tjs.1_Missense_Mutation_p.K859R|MCF2L_uc001vst.1_Missense_Mutation_p.K823R	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	891	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				TACAGCTACAAGCAGTCCTTA	0.592000													10	22					0	0	1	0	0
HSPA2	3306	broad.mit.edu	37	14	65009419	65009419	+	Missense_Mutation	SNP	C	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr14:65009419C>A	uc001xhj.2	+	2	1928	c.1852C>A	c.(1852-1854)CCT>ACT	p.P618T	HSPA2_uc001xhk.3_Missense_Mutation_p.P618T	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	618					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		CCAAGGTGGTCCTggcggcgg	0.443000													24	49					1.22574e-08	1.30002e-08	1	1	0
ADAM6	8755	broad.mit.edu	37	14	107179222	107179222	+	RNA	SNP	G	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr14:107179222G>A	uc010tyt.1	-	31		c.2102C>T								Parts of antibodies, mostly variable regions.												0						CTCACAGGACGGGACAGTCAG	0.507000													11	35					0	0	1	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40324962	40324962	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr15:40324962A>G	uc001zkm.1	+	37	4783	c.4733A>G	c.(4732-4734)GAT>GGT	p.D1578G	EIF2AK4_uc010bbj.1_Missense_Mutation_p.D1279G|EIF2AK4_uc001zkn.1_Missense_Mutation_p.D678G|EIF2AK4_uc001zko.1_Missense_Mutation_p.D459G|EIF2AK4_uc010bbk.1_RNA	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	1578					translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		TCACAGGTGGATCTACCCAAA	0.388000													11	36					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19051691	19051691	+	Silent	SNP	C	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr16:19051691C>A	uc002dfq.2	+	9	1390	c.1260C>A	c.(1258-1260)ATC>ATA	p.I420I	TMC7_uc010vao.1_Missense_Mutation_p.H415N|TMC7_uc002dfp.2_Silent_p.I420I|TMC7_uc010vap.1_Silent_p.I310I	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	420	Helical; (Potential).					integral to membrane				skin(2)|ovary(1)	3						CCAATTTTATCACCCCAATGA	0.398000													24	104					1.64293e-13	1.85492e-13	1	1	0
NETO2	81831	broad.mit.edu	37	16	47117430	47117430	+	Missense_Mutation	SNP	C	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr16:47117430C>T	uc002eer.1	-	9	1665	c.1280G>A	c.(1279-1281)CGC>CAC	p.R427H	NETO2_uc002eeq.1_Missense_Mutation_p.R162H|NETO2_uc010vgf.1_Missense_Mutation_p.R284H	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	427	Cytoplasmic (Potential).					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				GGTGGAGGAGCGCCGCATCTT	0.537000										HNSCC(25;0.065)			48	190					0	0	1	0	0
EIF4A1	1973	broad.mit.edu	37	17	7478578	7478578	+	Splice_Site	SNP	T	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr17:7478578T>G	uc002gho.1	+	12	1670	c.345_splice	c.e12+2	p.Q115_splice	EIF4A1_uc002ghr.1_Splice_Site_p.Q115_splice|EIF4A1_uc002ghq.1_Splice_Site_p.Q115_splice|EIF4A1_uc002ghp.1_Splice_Site_p.Q115_splice|SNORD10_uc002ght.2_5'Flank|SNORA67_uc010cml.1_5'Flank	NM_001416	NP_001407	P60842	IF4A1_HUMAN	eukaryotic translation initiation factor 4A						nuclear-transcribed mRNA poly(A) tail shortening	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA cap binding|translation initiation factor activity			ovary(1)	1						GCTCAGCAGGTAAGAGTGGCT	0.488000													24	101					0	0	1	0	0
MED24	9862	broad.mit.edu	37	17	38187790	38187790	+	Splice_Site	SNP	C	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr17:38187790C>G	uc002htt.2	-	11	1380	c.1067_splice	c.e11+1	p.N356_splice	MED24_uc010wes.1_Splice_Site_p.N216_splice|MED24_uc010wet.1_Intron|MED24_uc002hts.2_Splice_Site_p.N381_splice|MED24_uc002htu.2_Splice_Site_p.N343_splice|MED24_uc010cwn.2_Splice_Site_p.N343_splice|MED24_uc010weu.1_Splice_Site_p.N266_splice|MED24_uc010wev.1_Splice_Site_p.N306_splice|MED24_uc010wew.1_Splice_Site_p.N285_splice|MED24_uc010wex.1_Splice_Site_p.N61_splice	NM_014815	NP_055630	O75448	MED24_HUMAN	mediator complex subunit 24 isoform 1						androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1	Colorectal(19;0.000442)					GGAGCTCATACTTGCAGCGCT	0.557000													33	192					0	0	1	0	0
NPEPPS	9520	broad.mit.edu	37	17	45669357	45669357	+	Silent	SNP	A	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr17:45669357A>T	uc002ilr.3	+	11	1519	c.1296A>T	c.(1294-1296)ATA>ATT	p.I432I	NPEPPS_uc010wkt.1_Silent_p.I428I|NPEPPS_uc010wku.1_Silent_p.I396I|NPEPPS_uc010wkv.1_5'UTR	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	432					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						TTGATGAGATATTTGATGCTA	0.383000													10	53					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342186	60342186	+	RNA	SNP	T	C	C	rs79096325		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr17:60342186T>C	uc010woz.1	-	14		c.1943A>G				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						GCTGGGGGTGTTGGGAGGGGC	0.493000													3	39					0	0	1	0	0
CCDC45	90799	broad.mit.edu	37	17	62532827	62532827	+	Missense_Mutation	SNP	G	C	C			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr17:62532827G>C	uc002jem.2	+	18	2236	c.2178G>C	c.(2176-2178)CAG>CAC	p.Q726H	CCDC45_uc002jen.2_RNA|CCDC45_uc010wqb.1_Missense_Mutation_p.Q562H	NM_138363	NP_612372	Q96GE4	CEP95_HUMAN	coiled-coil domain containing 45	726	Potential.					centrosome|spindle pole	protein binding				0	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			GACGCCACCAGGATGAACTGG	0.458000													29	74					0	0	1	0	0
PTPRM	5797	broad.mit.edu	37	18	8244151	8244151	+	Missense_Mutation	SNP	G	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr18:8244151G>A	uc002knn.3	+	15	2899	c.2396G>A	c.(2395-2397)GGC>GAC	p.G799D	PTPRM_uc010dkv.2_Missense_Mutation_p.G799D|PTPRM_uc010wzl.1_Missense_Mutation_p.G586D	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	799	Cytoplasmic (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				GCTGAGCAGGGCACAAACTGC	0.483000													5	135					0	0	1	0	0
CYP2A6	1548	broad.mit.edu	37	19	41349750	41349750	+	Missense_Mutation	SNP	C	A	A	rs5031017	byFrequency	TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr19:41349750C>A	uc002opl.3	-	9	1457	c.1436G>T	c.(1435-1437)GGC>GTC	p.G479V		NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	479					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	CGTGGCAAAGCCCACGTGTTT	0.597000													6	160					3.59834e-05	3.75946e-05	1	1	0
ZNF419	79744	broad.mit.edu	37	19	58005060	58005060	+	Missense_Mutation	SNP	T	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr19:58005060T>G	uc002qov.2	+	5	1375	c.1135T>G	c.(1135-1137)TTT>GTT	p.F379V	ZNF547_uc002qpm.3_Intron|ZNF419_uc010ety.1_Missense_Mutation_p.F380V|ZNF419_uc010etz.1_Missense_Mutation_p.F367V|ZNF419_uc010eua.1_Missense_Mutation_p.F366V|ZNF419_uc002qow.2_Missense_Mutation_p.F347V|ZNF419_uc010eub.1_Missense_Mutation_p.F334V|ZNF419_uc010euc.1_Missense_Mutation_p.F333V	NM_024691	NP_078967	Q96HQ0	ZN419_HUMAN	zinc finger protein 419 isoform 2	379	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0252)|Lung(386;0.171)		CTGTGGGAAATTTTTTACCCA	0.408000													37	123					0	0	1	0	0
GEN1	348654	broad.mit.edu	37	2	17962008	17962008	+	Missense_Mutation	SNP	G	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr2:17962008G>A	uc002rct.2	+	14	1602	c.1529G>A	c.(1528-1530)GGG>GAG	p.G510E	SMC6_uc010exo.2_Intron|GEN1_uc010yjs.1_Missense_Mutation_p.G510E|GEN1_uc002rcu.2_Missense_Mutation_p.G510E	NM_182625	NP_872431	Q17RS7	GEN_HUMAN	Gen homolog 1, endonuclease	510					DNA repair	nucleus	DNA binding|endonuclease activity|metal ion binding			breast(5)|kidney(1)|central_nervous_system(1)|skin(1)	8	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTAAATTCGGGGATTTCCCCT	0.373000								Homologous_recombination					12	49					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21238283	21238283	+	Missense_Mutation	SNP	G	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr2:21238283G>A	uc002red.2	-	22	3595	c.3467C>T	c.(3466-3468)GCT>GTT	p.A1156V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1156					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGAGCCATAAGCTGTAGCAGA	0.507000													20	110					0	0	1	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612000													3	18					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141607702	141607702	+	Silent	SNP	G	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr2:141607702G>A	uc002tvj.1	-	29	5880	c.4908C>T	c.(4906-4908)AAC>AAT	p.N1636N	LRP1B_uc010fnl.1_Silent_p.N818N	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1636	Extracellular (Potential).|LDL-receptor class B 14.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACCCAGTTCCGTTAATAAAAG	0.318000										TSP Lung(27;0.18)			13	62					0	0	1	0	0
C20orf7	79133	broad.mit.edu	37	20	13775537	13775537	+	Missense_Mutation	SNP	A	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr20:13775537A>T	uc002wom.2	+	5	462	c.429A>T	c.(427-429)GAA>GAT	p.E143D	C20orf7_uc002wol.1_Missense_Mutation_p.E143D|C20orf7_uc002won.2_Intron|C20orf7_uc002woo.2_RNA	NM_024120	NP_077025	Q5TEU4	CT007_HUMAN	hypothetical protein LOC79133 isoform 1	143					mitochondrial respiratory chain complex I assembly	extrinsic to mitochondrial inner membrane	methyltransferase activity				0		Myeloproliferative disorder(85;0.00878)				CTGATGAAGAATTCCTTCCCT	0.318000													4	26					0	0	1	0	0
GART	2618	broad.mit.edu	37	21	34904710	34904710	+	Missense_Mutation	SNP	C	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr21:34904710C>T	uc002yrx.2	-	5	604	c.469G>A	c.(469-471)GGG>AGG	p.G157R	GART_uc002yrz.2_Missense_Mutation_p.G157R|GART_uc010gmd.2_5'UTR|GART_uc002yry.2_Missense_Mutation_p.G157R|GART_uc002ysa.2_Missense_Mutation_p.G157R	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	157	ATP (By similarity).|ATP-grasp.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	ACAATCACCCCTTTTCCAGCT	0.428000													73	311					0	0	1	0	0
ADORA2A	135	broad.mit.edu	37	22	24837246	24837246	+	Missense_Mutation	SNP	C	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr22:24837246C>T	uc002zzx.2	+	5	1791	c.1028C>T	c.(1027-1029)CCA>CTA	p.P343L	ADORA2A_uc002zzy.3_Missense_Mutation_p.P343L|ADORA2A_uc011ajs.1_Missense_Mutation_p.P204L|ADORA2A_uc010gup.2_Missense_Mutation_p.P343L|ADORA2A_uc010guq.2_Missense_Mutation_p.P343L|ADORA2A_uc003aab.2_Missense_Mutation_p.P343L|ADORA2A_uc003aac.2_Missense_Mutation_p.P204L|C22orf45_uc003aad.1_Intron	NM_000675	NP_000666	P29274	AA2AR_HUMAN	adenosine A2a receptor	343	Cytoplasmic.				apoptosis|blood coagulation|cAMP biosynthetic process|cellular defense response|inflammatory response|nerve growth factor receptor signaling pathway|phagocytosis|sensory perception	integral to plasma membrane|membrane fraction	enzyme binding				0	Colorectal(2;0.196)				Caffeine(DB00201)|Defibrotide(DB04932)|Pegademase bovine(DB00061)|Theophylline(DB00277)	GGCCACCCGCCAGGAGTGTGG	0.662000													12	31					0	0	1	0	0
IGSF10	285313	broad.mit.edu	37	3	151161388	151161388	+	Missense_Mutation	SNP	T	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr3:151161388T>A	uc011bod.1	-	5	5347	c.5347A>T	c.(5347-5349)AAC>TAC	p.N1783Y	IGSF10_uc011bob.1_5'Flank|IGSF10_uc011boc.1_5'Flank	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	1783	Ig-like C2-type 4.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ACTGTTTGGTTTGCAAGAATC	0.498000													24	77					0	0	1	0	0
GOLIM4	27333	broad.mit.edu	37	3	167742778	167742778	+	Missense_Mutation	SNP	T	C	C			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr3:167742778T>C	uc003ffe.2	-	13	2073	c.1729A>G	c.(1729-1731)AAT>GAT	p.N577D	GOLIM4_uc011bpe.1_Missense_Mutation_p.N578D|GOLIM4_uc011bpf.1_Missense_Mutation_p.N550D|GOLIM4_uc011bpg.1_Missense_Mutation_p.N549D	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	577	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						TGCTCTTCATTTTCATCTGGC	0.408000													23	120					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69870669	69870669	+	Missense_Mutation	SNP	C	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr4:69870669C>A	uc011cao.1	-	9	1517	c.1381G>T	c.(1381-1383)GCT>TCT	p.A461S	UGT2B10_uc011can.1_Missense_Mutation_p.A377S			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	498	Helical; (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GCCACACAGGCCAGCAGGAAC	0.448000													18	187					6.49762e-13	7.21958e-13	1	1	0
CENPE	1062	broad.mit.edu	37	4	104117119	104117119	+	Silent	SNP	A	C	C			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr4:104117119A>C	uc003hxb.1	-	4	405	c.315T>G	c.(313-315)GTT>GTG	p.V105V	CENPE_uc003hxc.1_Silent_p.V105V	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	105	Kinesin-motor.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		CCCTGGGTATAACTCCCAAAT	0.358000													8	22					0	0	1	0	0
IL6ST	3572	broad.mit.edu	37	5	55247844	55247844	+	Missense_Mutation	SNP	C	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr5:55247844C>G	uc003jqq.2	-	13	1867	c.1612G>C	c.(1612-1614)GAG>CAG	p.E538Q	IL6ST_uc010iwb.2_Missense_Mutation_p.E477Q|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Missense_Mutation_p.E249Q|IL6ST_uc003jqr.2_3'UTR|IL6ST_uc010iwe.1_5'Flank	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	538	Extracellular (Potential).|Fibronectin type-III 5.				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				TGGTCCCACTCTAAGACAGCT	0.348000			O		hepatocellular ca								3	32					0	0	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149433707	149433707	+	Missense_Mutation	SNP	A	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr5:149433707A>T	uc003lrl.2	-	21	3039	c.2844T>A	c.(2842-2844)AGT>AGA	p.S948R	CSF1R_uc011dcd.1_3'UTR|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Missense_Mutation_p.S948R	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	948	Cytoplasmic (Potential).				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	TCAGGTGCTCACTAGAGCTCT	0.473000													8	31					0	0	1	0	0
VARS	7407	broad.mit.edu	37	6	31762754	31762754	+	Missense_Mutation	SNP	G	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr6:31762754G>T	uc003nxe.2	-	2	664	c.241C>A	c.(241-243)CCA>ACA	p.P81T	VARS_uc011doi.1_Intron	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	81					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	AGGCCTGCTGGCCACAGCAGC	0.711000													9	38					0.00621372	0.00621372	1	1	0
AARS2	57505	broad.mit.edu	37	6	44272835	44272835	+	Missense_Mutation	SNP	T	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr6:44272835T>A	uc010jza.1	-	11	1538	c.1535A>T	c.(1534-1536)GAC>GTC	p.D512V	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_020745	NP_065796	Q5JTZ9	SYAM_HUMAN	alanyl-tRNA synthetase 2, mitochondrial	512					alanyl-tRNA aminoacylation	mitochondrion	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			ovary(1)	1	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		L-Alanine(DB00160)	CTTGGGGCTGTCGTCAGTTGG	0.607000											OREG0017473	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	231					0	0	1	0	0
PUS7	54517	broad.mit.edu	37	7	105099624	105099624	+	Missense_Mutation	SNP	A	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr7:105099624A>G	uc003vcx.2	-	15	2059	c.1840T>C	c.(1840-1842)TTT>CTT	p.F614L	PUS7_uc010lji.2_Missense_Mutation_p.F620L|PUS7_uc003vcy.2_Missense_Mutation_p.F614L|PUS7_uc003vcz.1_Missense_Mutation_p.F614L	NM_019042	NP_061915	Q96PZ0	PUS7_HUMAN	pseudouridylate synthase 7 homolog	614					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			breast(1)	1						CCAGAAGCAAAAACTGGTGGT	0.353000													13	44					0	0	1	0	0
C8orf79	57604	broad.mit.edu	37	8	12879058	12879058	+	Silent	SNP	T	C	C			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr8:12879058T>C	uc010lsq.2	+	5	1362	c.870T>C	c.(868-870)TCT>TCC	p.S290S	C8orf79_uc011kxw.1_Intron|C8orf79_uc003wwj.3_Silent_p.S203S|C8orf79_uc010lsr.2_Silent_p.S164S	NM_020844	NP_065895	Q9P272	K1456_HUMAN	hypothetical protein LOC57604 isoform 1	290							methyltransferase activity				0						CCAGACACTCTAGTTTAGACT	0.423000													10	56					0	0	1	0	0
RP2	6102	broad.mit.edu	37	X	46713306	46713306	+	Missense_Mutation	SNP	C	G	G			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chrX:46713306C>G	uc004dgw.3	+	2	687	c.498C>G	c.(496-498)ATC>ATG	p.I166M		NM_006915	NP_008846	O75695	XRP2_HUMAN	XRP2 protein	166	C-CAP/cofactor C-like.				cell morphogenesis|CTP biosynthetic process|GTP biosynthetic process|protein folding|UTP biosynthetic process|visual perception	cytoplasm|plasma membrane	ATP binding|GTP binding|GTPase activator activity|nucleoside diphosphate kinase activity|unfolded protein binding				0						GGCTAAGTATCTTCAACAATA	0.403000													27	142					0	0	1	0	0
SLITRK2	84631	broad.mit.edu	37	X	144904238	144904238	+	Nonsense_Mutation	SNP	C	T	T			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chrX:144904238C>T	uc004fcd.2	+	5	1285	c.295C>T	c.(295-297)CAG>TAG	p.Q99*	SLITRK2_uc010nsp.2_Nonsense_Mutation_p.Q99*|SLITRK2_uc010nso.2_Nonsense_Mutation_p.Q99*|SLITRK2_uc011mwq.1_Nonsense_Mutation_p.Q99*|SLITRK2_uc011mwr.1_Nonsense_Mutation_p.Q99*|SLITRK2_uc011mws.1_Nonsense_Mutation_p.Q99*|SLITRK2_uc004fcg.2_Nonsense_Mutation_p.Q99*|SLITRK2_uc011mwt.1_Nonsense_Mutation_p.Q99*	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	99	Extracellular (Potential).|LRR 2.					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					CAACGGGTTACAGGAGATCCG	0.458000													32	128					0	0	1	0	0
PNCK	139728	broad.mit.edu	37	X	152939728	152939728	+	Translation_Start_Site	SNP	C	T	T	rs5987128	by1000genomes	TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chrX:152939728C>T	uc011myu.1	-	1	89	c.-97G>A	c.(-99--95)GGGTG>GGATG		PNCK_uc011myt.1_5'Flank|PNCK_uc004fia.2_Intron|PNCK_uc004fhz.3_Translation_Start_Site|PNCK_uc010nuh.2_Translation_Start_Site|PNCK_uc011myv.1_5'Flank|PNCK_uc011myw.1_Intron	NM_001039582	NP_001034671	Q6P2M8	KCC1B_HUMAN	pregnancy upregulated non-ubiquitously expressed							cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					taatccctcaccctcgctttc	0.209000													3	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	155252868	155252868	+	Silent	SNP	T	A	A			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chrX:155252868T>A	uc004fnw.1	+	6	1571	c.912T>A	c.(910-912)CCT>CCA	p.P304P	uc004fnx.3_Silent_p.P90P	NM_182905	NP_878908			WAS protein family homolog 1																		TAGCCGAGCCTCTCAAGGCAG	0.632000													5	28					0	0	1	0	0
TSG101	7251	broad.mit.edu	37	11	18541141	18541142	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr11:18541141_18541142delTG	uc001mor.2	-	2	177_178	c.51_52delCA	c.(49-54)TACAGAfs	p.Y17fs	TSG101_uc001mos.1_Intron|TSG101_uc009yhs.1_Intron	NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	17_18	UEV.				cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						GTTAGGTCTCTGTATTTGTACT	0.307													17	82	---	---	---	---					
LATS2	26524	broad.mit.edu	37	13	21562482	21562483	+	In_Frame_Ins	INS	-	GGGGCG	GGGGCG	rs10658032		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr13:21562482_21562483insGGGGCG	uc009zzs.2	-	4	1801_1802	c.1436_1437insCGCCCC	c.(1435-1437)CCG>CCCGCCCCG	p.479_479P>PAP	LATS2_uc001unr.3_In_Frame_Ins_p.479_479P>PAP	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	479					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity	p.P479_A480insGR(1)		lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		CCTCCGCAgccggggcgggggc	0.589													4	6	---	---	---	---					
MAML3	55534	broad.mit.edu	37	4	140810639	140810641	+	In_Frame_Del	DEL	GCT	-	-			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr4:140810639_140810641delGCT	uc003ihz.1	-	3	2689_2691	c.1937_1939delAGC	c.(1936-1941)CAGCCG>CCG	p.Q646del	MAML3_uc011chd.1_Intron	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	646	Gln-rich.				Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					GGAGGTGGCGgctgctgctgctg	0.419													8	132	---	---	---	---					
FAT1	2195	broad.mit.edu	37	4	187539365	187539365	+	Frame_Shift_Del	DEL	G	-	-			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr4:187539365delG	uc003izf.2	-	10	8563	c.8375delC	c.(8374-8376)TCTfs	p.S2792fs		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2792	Extracellular (Potential).|Cadherin 25.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AACATCTACAGAAGCCACCAT	0.443										HNSCC(5;0.00058)			7	267	---	---	---	---					
ZNF184	7738	broad.mit.edu	37	6	27420221	27420223	+	In_Frame_Del	DEL	TGG	-	-			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr6:27420221_27420223delTGG	uc003njj.2	-	5	1926_1928	c.1115_1117delCCA	c.(1114-1119)ACCAGG>AGG	p.T372del	ZNF184_uc010jqv.2_In_Frame_Del_p.T372del|ZNF184_uc003nji.2_In_Frame_Del_p.T372del	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	372	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGTGTGCTCCTGGTGAAGGTTTT	0.379													14	56	---	---	---	---					
FOXK1	221937	broad.mit.edu	37	7	4802068	4802068	+	Frame_Shift_Del	DEL	C	-	-			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chr7:4802068delC	uc003snc.1	+	9	2185	c.2175delC	c.(2173-2175)GGCfs	p.G725fs	FOXK1_uc003sna.1_Frame_Shift_Del_p.G562fs	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	725					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		CAGCTGCCGGCCCCCAGGGGC	0.652													2	4	---	---	---	---					
GRPR	2925	broad.mit.edu	37	X	16168549	16168550	+	Frame_Shift_Ins	INS	-	C	C			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chrX:16168549_16168550insC	uc004cxj.2	+	2	1188_1189	c.535_536insC	c.(535-537)TCTfs	p.S179fs		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	179	Extracellular (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					GGCCGTGTTTTCTGACCTCCAT	0.505													59	226	---	---	---	---					
CNKSR2	22866	broad.mit.edu	37	X	21627678	21627680	+	In_Frame_Del	DEL	GAG	-	-			TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08									Somatic	Phase_I	Capture				Illumina GAIIx	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	g.chrX:21627678_21627680delGAG	uc004czx.1	+	20	2671_2673	c.2635_2637delGAG	c.(2635-2637)GAGdel	p.E886del	CNKSR2_uc004czw.2_In_Frame_Del_p.E886del|CNKSR2_uc011mjn.1_In_Frame_Del_p.E837del|CNKSR2_uc011mjo.1_In_Frame_Del_p.E856del|CNKSR2_uc004czy.2_In_Frame_Del_p.E478del	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	886	Potential.|Poly-Glu.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						ggtggaggaagaggaggaggagg	0.379													7	98	---	---	---	---					
