Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
TP53	7157	genome.wustl.edu	36	17	7514728	7514728	+	Nonsense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	7514728	7514728	TP53	17	G	A	A	39
HAO1	54363	genome.wustl.edu	36	20	7869060	7869060	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	7869060	7869060	HAO1	20	G	G	A	39
ATXN3L	92552	genome.wustl.edu	36	X	13247265	13247265	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	13247265	13247265	ATXN3L	23	C	C	T	27
ZNF101	94039	genome.wustl.edu	36	19	19651934	19651934	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	19651934	19651934	ZNF101	19	G	G	T	36
VWA3A	146177	genome.wustl.edu	36	16	22051738	22051738	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	22051738	22051738	VWA3A	16	A	A	G	14
C2orf16	84226	genome.wustl.edu	36	2	27657848	27657848	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27657848	27657848	C2orf16	2	G	G	C	33
CD2BP2	10421	genome.wustl.edu	36	16	30272056	30272056	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	30272056	30272056	CD2BP2	16	C	C	G	30
SPOCD1	90853	genome.wustl.edu	36	1	32038045	32038045	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	32038045	32038045	SPOCD1	1	G	G	C	43
NOTCH4	4855	genome.wustl.edu	36	6	32280085	32280085	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	32280085	32280085	NOTCH4	6	T	T	A	60
C21orf62	56245	genome.wustl.edu	36	21	33088423	33088423	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	33088423	33088423	C21orf62	21	C	C	A	17
HIPK3	10114	genome.wustl.edu	36	11	33315267	33315268	+	Missense_Mutation	DNP	GA	GA	TT	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	GA	GA					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	DNP	33315267	33315268	HIPK3	11	GA	GA	TT	33
DLGAP4	22839	genome.wustl.edu	36	20	34493861	34493861	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	34493861	34493861	DLGAP4	20	G	G	C	33
RALGAPA1	253959	genome.wustl.edu	36	14	35078573	35078573	+	Missense_Mutation	SNP	T	C	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	35078573	35078573	RALGAPA1	14	T	C	C	52
CBY1	25776	genome.wustl.edu	36	22	37394077	37394077	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	37394077	37394077	CBY1	22	G	A	A	46
PDIA3	2923	genome.wustl.edu	36	15	41845419	41845419	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	T	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41845419	41845419	PDIA3	15	G	T	T	45
MCAT	27349	genome.wustl.edu	36	22	41863110	41863110	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41863110	41863110	MCAT	22	G	G	T	33
HAUS1	115106	genome.wustl.edu	36	18	41962078	41962078	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	41962078	41962078	HAUS1	18	A	A	T	12
LOC100129622		genome.wustl.edu	36	10	42552611	42552611	+	Splice_Site_SNP	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	42552611	42552611	LOC100129622	10	G	G	A	44
SLC38A1	81539	genome.wustl.edu	36	12	44881235	44881235	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	44881235	44881235	SLC38A1	12	T	T	C	64
PEX16	9409	genome.wustl.edu	36	11	45892454	45892454	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	45892454	45892454	PEX16	11	G	A	A	39
CLIC5	53405	genome.wustl.edu	36	6	45978899	45978899	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	45978899	45978899	CLIC5	6	G	G	A	40
RB1	5925	genome.wustl.edu	36	13	47931968	47931968	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	47931968	47931968	RB1	13	C	A	A	21
CELSR3	1951	genome.wustl.edu	36	3	48672956	48672956	+	Missense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	48672956	48672956	CELSR3	3	C	T	T	21
NID2	22795	genome.wustl.edu	36	14	51604632	51604632	+	Splice_Site_SNP	SNP	C	C	G	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	51604632	51604632	NID2	14	C	C	G	24
CACNA1D	776	genome.wustl.edu	36	3	53506237	53506237	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	53506237	53506237	CACNA1D	3	G	G	T	42
ERBB3	2065	genome.wustl.edu	36	12	54773433	54773433	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	54773433	54773433	ERBB3	12	G	G	A	48
OR5B21	219968	genome.wustl.edu	36	11	58031744	58031744	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	58031744	58031744	OR5B21	11	A	A	G	6
ANK3	288	genome.wustl.edu	36	10	61501621	61501621	+	Missense_Mutation	SNP	G	C	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	C	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	61501621	61501621	ANK3	10	G	C	C	36
PCDH9	5101	genome.wustl.edu	36	13	65777069	65777069	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	65777069	65777069	PCDH9	13	G	G	A	42
CSPP1	79848	genome.wustl.edu	36	8	68250188	68250188	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	68250188	68250188	CSPP1	8	G	G	C	33
RIMS1	22999	genome.wustl.edu	36	6	73031872	73031872	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	73031872	73031872	RIMS1	6	C	C	A	29
KARS	3735	genome.wustl.edu	36	16	74220871	74220871	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	74220871	74220871	KARS	16	C	T	T	19
MYST4	23522	genome.wustl.edu	36	10	76459441	76459441	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	76459441	76459441	MYST4	10	G	G	T	36
WDR45L	56270	genome.wustl.edu	36	17	78167729	78167729	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	78167729	78167729	WDR45L	17	C	A	A	19
MAML2	84441	genome.wustl.edu	36	11	95465022	95465022	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	T	C	T	C	Unknown	Valid	Germline	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	95465022	95465022	MAML2	11	T	T	C	60
CYP3A43	64816	genome.wustl.edu	36	7	99295550	99295550	+	Splice_Site_SNP	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	99295550	99295550	CYP3A43	7	G	G	T	44
BTK	695	genome.wustl.edu	36	X	100494971	100494971	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	100494971	100494971	BTK	23	G	A	A	41
INVS	27130	genome.wustl.edu	36	9	102044713	102044713	+	Silent	SNP	G	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	A	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	102044713	102044713	INVS	9	G	A	A	36
DENND2D	79961	genome.wustl.edu	36	1	111543793	111543793	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	111543793	111543793	DENND2D	1	G	G	T	35
MOV10	4343	genome.wustl.edu	36	1	113034079	113034079	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	113034079	113034079	MOV10	1	G	G	A	39
STXBP5L	9515	genome.wustl.edu	36	3	122619938	122619938	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	122619938	122619938	STXBP5L	3	T	T	G	57
SNX19	399979	genome.wustl.edu	36	11	130290258	130290258	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	130290258	130290258	SNX19	11	C	C	A	17
EXOC4	60412	genome.wustl.edu	36	7	133230893	133230893	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	133230893	133230893	EXOC4	7	G	G	A	34
YSK4	80122	genome.wustl.edu	36	2	135465585	135465585	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	135465585	135465585	YSK4	2	T	T	C	56
MGAM	8972	genome.wustl.edu	36	7	141396976	141396976	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	141396976	141396976	MGAM	7	A	A	G	11
uc003vyo.2		genome.wustl.edu	36	7	141838407	141838407	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	C	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	141838407	141838407	uc003vyo.2	7	C	C	A	18
HIST2H2AB	317772	genome.wustl.edu	36	1	148125788	148125788	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	148125788	148125788	HIST2H2AB	1	G	G	T	45
LATS1	9113	genome.wustl.edu	36	6	150045932	150045932	+	Silent	SNP	T	C	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	C	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	150045932	150045932	LATS1	6	T	C	C	60
FLG2	388698	genome.wustl.edu	36	1	150595558	150595558	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	T	A	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	150595558	150595558	FLG2	1	T	T	A	62
SLC36A2	153201	genome.wustl.edu	36	5	150685145	150685145	+	Missense_Mutation	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	150685145	150685145	SLC36A2	5	C	A	A	30
IQGAP3	128239	genome.wustl.edu	36	1	154788499	154788499	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	154788499	154788499	IQGAP3	1	G	G	C	43
FCRL1	115350	genome.wustl.edu	36	1	156040398	156040398	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	156040398	156040398	FCRL1	1	G	G	A	35
SCN1A	6323	genome.wustl.edu	36	2	166608698	166608698	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	166608698	166608698	SCN1A	2	G	G	A	37
INHA	3623	genome.wustl.edu	36	2	220148263	220148263	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	220148263	220148263	INHA	2	G	G	C	48
ENAH	55740	genome.wustl.edu	36	1	223768935	223768935	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	T	T	T	G	T	T	Unknown	Valid	Somatic	4	Capture	Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	223768935	223768935	ENAH	1	T	T	G	53
BRCA1	672	genome.wustl.edu	36	17	38497279	38497280	+	Frame_Shift_Ins	INS	-	-	TT	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	-	-	-	TT	-	-	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA;Sanger_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Ins	INS	38497279	38497280	BRCA1	17	-	-	TT	16
ANGPT1	284	genome.wustl.edu	36	8	108384722	108384723	+	Frame_Shift_Ins	INS	-	-	TT	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	-	-					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Ins	INS	108384722	108384723	ANGPT1	8	-	-	TT	6
DARC	2532	genome.wustl.edu	36	1	157442218	157442231	+	Frame_Shift_Del	DEL	GCACTCGCAGCTCT	GCACTCGCAGCTCT	-	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	GCACTCGCAGCTCT	GCACTCGCAGCTCT	GCACTCGCAGCTCT	-	GCACTCGCAGCTCT	GCACTCGCAGCTCT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	157442218	157442231	DARC	1	GCACTCGCAGCTCT	GCACTCGCAGCTCT	-	34
KIF26B	55083	genome.wustl.edu	36	1	243876204	243876207	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	AAGT	AAGT	AAGT	-	AAGT	AAGT	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	243876204	243876207	KIF26B	1	AAGT	AAGT	-	5
EPHB2	2048	genome.wustl.edu	36	1	23112740	23112740	+	Silent	SNP	C	A	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	A	A	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	23112740	23112740	EPHB2	1	C	A	A	26
ALG9	79796	genome.wustl.edu	36	11	111229327	111229327	+	Nonsense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	111229327	111229327	ALG9	11	C	T	T	30
HIPK2	28996	genome.wustl.edu	36	7	138935823	138935823	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-13-1489-01	TCGA-13-1489-10	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	138935823	138935823	HIPK2	7	G	G	A	44
