Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	6403861	6403861	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7383160	7383160	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7568517	7568517	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AADAC	13	broad.mit.edu	37	3	151545721	151545721	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48204061	48204061	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48174704	48174704	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48741549	48741549	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44071702	44071702	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116226214	116226215	+	Intron	INS	-	AAC	AAC	rs142931560	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31672930	31672930	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACO1	48	broad.mit.edu	37	9	32436254	32436254	+	Silent	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPL2	92370	broad.mit.edu	37	3	141002237	141002237	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127818758	127818758	+	Intron	DEL	T	-	-	rs72414071		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM15	8751	broad.mit.edu	37	1	155034269	155034270	+	Intron	DEL	CC	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106845521	106845521	+	RNA	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100591701	100591701	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123071211	123071211	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADC	113451	broad.mit.edu	37	1	33583668	33583669	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADNP	23394	broad.mit.edu	37	20	49518564	49518564	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRB3	155	broad.mit.edu	37	8	37823585	37823585	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147743992	147743992	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP5	729092	broad.mit.edu	37	10	75457454	75457454	+	Silent	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105418309	105418309	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIFM1	9131	broad.mit.edu	37	X	129264138	129264138	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74283142	74283143	+	Intron	DNP	GG	TT	TT			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125826122	125826122	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29474042	29474042	+	Missense_Mutation	SNP	G	T	T	rs77102810	byFrequency;by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1P	200420	broad.mit.edu	37	2	73899847	73899847	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73835701	73835701	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56247641	56247641	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC10	10393	broad.mit.edu	37	4	145916517	145916517	+	3'UTR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGEL1	23357	broad.mit.edu	37	14	77272897	77272897	+	Silent	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41545818	41545818	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114232510	114232510	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61832647	61832647	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95650081	95650081	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112175871	112175871	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21255315	21255315	+	Silent	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQR	9716	broad.mit.edu	37	15	35212663	35212663	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP10	79658	broad.mit.edu	37	4	148894275	148894275	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	144313963	144313963	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP21	57584	broad.mit.edu	37	10	24909728	24909728	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131687407	131687407	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235459477	235459477	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID5A	10865	broad.mit.edu	37	2	97217015	97217015	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76397586	76397586	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113464905	113464905	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193071870	193071870	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039232	11039233	+	3'UTR	DNP	CC	AA	AA			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11045627	11045627	+	Intron	DEL	A	-	-	rs56675609		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11047751	11047751	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11057363	11057363	+	Intron	SNP	C	A	A	rs75106326		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11068246	11068246	+	Intron	SNP	A	G	G	rs74432742	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32207610	32207610	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33573922	33573922	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDNFOS	497258	broad.mit.edu	37	11	27603628	27603628	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32658763	32658763	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP15	9210	broad.mit.edu	37	X	50658984	50658984	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43293007	43293007	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92447221	92447221	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf74	119710	broad.mit.edu	37	11	36680708	36680708	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112740065	112740065	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf53	196500	broad.mit.edu	37	12	6809683	6809683	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf56	115749	broad.mit.edu	37	12	64732106	64732106	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf64	388011	broad.mit.edu	37	14	98443036	98443036	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170927197	170927197	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63631702	63631702	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf31	132001	broad.mit.edu	37	3	11880586	11880586	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf19	55286	broad.mit.edu	37	4	37591710	37591710	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf37	285555	broad.mit.edu	37	4	98762072	98762072	+	Silent	SNP	C	A	A	rs149484886	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175735130	175735130	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf83	286144	broad.mit.edu	37	8	93898855	93898855	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90502663	90502663	+	Silent	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2775889	2775889	+	Silent	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49088122	49088122	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81634674	81634674	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86115739	86115739	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCR	799	broad.mit.edu	37	7	93113427	93113427	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219892857	219892857	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128449627	128449627	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197521518	197521518	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC54	84692	broad.mit.edu	37	3	107096304	107096308	+	Translation_Start_Site	DEL	TTCCA	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL14	6358	broad.mit.edu	37	17	34313577	34313578	+	Intron	INS	-	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR1	1230	broad.mit.edu	37	3	46245043	46245043	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227381578	227381578	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA2	157313	broad.mit.edu	37	8	25346185	25346185	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19612586	19612586	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44815221	44815221	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881506	26881506	+	Silent	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123156989	123156989	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFLAR	8837	broad.mit.edu	37	2	202000805	202000805	+	Silent	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD6	84303	broad.mit.edu	37	3	126485360	126485360	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6186602	6186602	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53265541	53265541	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	109919383	109919383	+	3'UTR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM1	1128	broad.mit.edu	37	11	62677713	62677713	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45671313	45671313	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC9A	283420	broad.mit.edu	37	12	10191672	10191672	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123319300	123319300	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88249423	88249423	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72223507	72223507	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147914331	147914331	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	148080944	148080944	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125521610	125521610	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103487243	103487243	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71697559	71697559	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101748343	101748343	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101759499	101759499	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139819975	139819975	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139856210	139856210	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110844537	110844537	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130311471	130311471	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130318587	130318587	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	68900954	68900954	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101816798	101816798	+	Missense_Mutation	SNP	C	A	A	rs140666731	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131623901	131623901	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPO	130749	broad.mit.edu	37	2	207804146	207804146	+	5'Flank	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211527951	211527951	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAMP1L	57585	broad.mit.edu	37	16	1715213	1715213	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREG2	200407	broad.mit.edu	37	2	101971757	101971757	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76251567	76251567	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43777587	43777587	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1315012	1315012	+	RNA	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1321326	1321326	+	RNA	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRLF2	64109	broad.mit.edu	37	X	1321328	1321328	+	RNA	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2830776	2830776	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34190025	34190025	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113364659	113364659	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114388918	114388918	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST2	1470	broad.mit.edu	37	20	23807310	23807310	+	5'UTR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80101178	80101178	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11236884	11236884	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSC	1075	broad.mit.edu	37	11	88029476	88029476	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR7	57007	broad.mit.edu	37	2	237489382	237489382	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf64	100130613	broad.mit.edu	37	X	125955279	125955279	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94836933	94836933	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15639381	15639383	+	Intron	DEL	TCT	-	-	rs142141600		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	58712269	58712269	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAO	1610	broad.mit.edu	37	12	109292644	109292644	+	Intron	SNP	G	T	T	rs140881184	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155180879	155180879	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155218883	155218883	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155011886	155011886	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52740525	52740525	+	Silent	SNP	A	G	G	rs146614901		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110734387	110734387	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX12	440081	broad.mit.edu	37	12	9581715	9581715	+	Intron	SNP	A	G	G	rs71453700		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74125189	74125189	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	445248	445248	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233127787	233127787	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83183817	83183817	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG3	1741	broad.mit.edu	37	X	69668755	69668756	+	Intron	INS	-	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35069378	35069378	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTB1	63948	broad.mit.edu	37	1	53927147	53927147	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13885039	13885039	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5B	85479	broad.mit.edu	37	8	67012343	67012343	+	3'UTR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2B	58511	broad.mit.edu	37	1	84880404	84880404	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98092504	98092504	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169122999	169122999	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169135110	169135110	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK2	9046	broad.mit.edu	37	8	21738082	21738082	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116497209	116497209	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100503390	100503390	+	Intron	DEL	G	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41521192	41521192	+	Intron	SNP	C	T	T	rs143757121	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56490042	56490042	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX1	1840	broad.mit.edu	37	12	113532805	113532806	+	Intron	INS	-	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX2	50506	broad.mit.edu	37	15	45388110	45388110	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103090682	103090682	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4708364	4708364	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83433157	83433157	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36327125	36327125	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	43995742	43995742	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHB	151651	broad.mit.edu	37	3	19921148	19921148	+	Missense_Mutation	SNP	C	A	A	rs151124981		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110902110	110902110	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4H	7458	broad.mit.edu	37	7	73609131	73609132	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36910141	36910141	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66361218	66361218	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134852061	134852061	+	Intron	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76966353	76966353	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133059673	133059673	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133722851	133722851	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139209862	139209862	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM138D	677784	broad.mit.edu	37	12	151609	151609	+	5'Flank	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61028191	61028191	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM149A	25854	broad.mit.edu	37	4	187088124	187088124	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM22G	441457	broad.mit.edu	37	9	99697766	99697766	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99042092	99042092	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127636547	127636547	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159272598	159272598	+	Intron	DEL	A	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137778148	137778148	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124872414	124872414	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD2	221472	broad.mit.edu	37	6	36978683	36978683	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF13	2258	broad.mit.edu	37	X	138140566	138140566	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38285759	38285759	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72755322	72755322	+	Silent	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40504	284085	broad.mit.edu	37	17	26623534	26623534	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43950	347127	broad.mit.edu	37	9	84530271	84530271	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240635683	240635683	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMOD	2331	broad.mit.edu	37	1	203175009	203175009	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4800711	4800711	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114282499	114282499	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272462	52272462	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29622975	29622975	+	5'Flank	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29645503	29645503	+	Intron	SNP	A	G	G	rs142707255	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180630407	180630408	+	5'Flank	INS	-	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYTTD1	84248	broad.mit.edu	37	3	197483217	197483217	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26866529	26866530	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27184303	27184303	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL1	57452	broad.mit.edu	37	14	69798189	69798189	+	Silent	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAP43	2596	broad.mit.edu	37	3	115395284	115395284	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89732239	89732239	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74838194	74838194	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEM	2669	broad.mit.edu	37	8	95262780	95262780	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55192349	55192349	+	5'UTR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT8P	645367	broad.mit.edu	37	2	91968602	91968602	+	RNA	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT8P	645367	broad.mit.edu	37	2	91969077	91969077	+	RNA	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT8P	645367	broad.mit.edu	37	2	91969096	91969096	+	RNA	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42005508	42005508	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GM2A	2760	broad.mit.edu	37	5	150757985	150757985	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20329668	20329668	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22415036	22415036	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131621484	131621484	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154071615	154071615	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR39	2863	broad.mit.edu	37	2	133214119	133214119	+	Intron	SNP	G	T	T	rs139715767	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR84	53831	broad.mit.edu	37	12	54756620	54756620	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50684045	50684045	+	Splice_Site	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB7	2886	broad.mit.edu	37	17	37899092	37899092	+	Intron	SNP	G	T	T	rs76121559	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87780804	87780811	+	Intron	DEL	CCTGCCTG	-	-	rs112303464		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	93365359	93365359	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102483196	102483196	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102503456	102503456	+	Splice_Site	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13769623	13769623	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66800225	66800225	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146350745	146350745	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34029651	34029651	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA2	2939	broad.mit.edu	37	6	52630299	52630299	+	5'Flank	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2P1	442245	broad.mit.edu	37	6	111368208	111368208	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108708281	108708281	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUK1	2987	broad.mit.edu	37	1	228335158	228335158	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBL1	387036	broad.mit.edu	37	6	26867031	26867031	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBL1	387036	broad.mit.edu	37	6	26867034	26867034	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO2	51179	broad.mit.edu	37	1	119935233	119935233	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83723979	83723979	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43505904	43505904	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197086832	197086832	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29797816	29797816	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29797818	29797818	+	Intron	SNP	C	T	T	rs142070733	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29797988	29797988	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42823316	42823316	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD13	3239	broad.mit.edu	37	2	176959096	176959097	+	Intron	DNP	CC	AT	AT			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD8	3234	broad.mit.edu	37	2	176995617	176995617	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152191897	152191897	+	Silent	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	114010014	114010014	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9	57549	broad.mit.edu	37	1	159912758	159912758	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17F	112744	broad.mit.edu	37	6	52112029	52112029	+	5'Flank	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29301284	29301284	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7231317	7231317	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPCEF1	26034	broad.mit.edu	37	6	154544347	154544347	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182359975	182359975	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15689130	15689130	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15730022	15730022	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187532368	187532368	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAG1	182	broad.mit.edu	37	20	10621877	10621877	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17937405	17937405	+	3'UTR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAL1	3730	broad.mit.edu	37	X	8591613	8591613	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146103	111146103	+	Silent	SNP	G	A	A	rs141901988		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033380	30033380	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	120382729	120382729	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150649468	150649468	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73879599	73879599	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM2B	84678	broad.mit.edu	37	12	121878958	121878958	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10602334	10602334	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57190505	57190505	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1462	57608	broad.mit.edu	37	10	30315636	30315636	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100137893	100137893	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39725586	39725586	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57961483	57961483	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70549713	70549713	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRAQ1	129285	broad.mit.edu	37	2	48681898	48681898	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-3	81850	broad.mit.edu	37	17	39190779	39190779	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-1	140258	broad.mit.edu	37	21	31768824	31768824	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-1	337977	broad.mit.edu	37	21	32127741	32127741	+	5'Flank	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-7	440050	broad.mit.edu	37	11	71238988	71238988	+	3'UTR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143742809	143742809	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153133300	153133300	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129634156	129634156	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107591535	107591535	+	Intron	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107745153	107745153	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136555719	136555719	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX5	64211	broad.mit.edu	37	12	113907200	113907201	+	Intron	INS	-	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55142687	55142687	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153910	153910	broad.mit.edu	37	6	142895684	142895684	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC340508	340508	broad.mit.edu	37	9	99838477	99838477	+	RNA	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647121	647121	broad.mit.edu	37	1	121304165	121304165	+	5'Flank	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647121	647121	broad.mit.edu	37	1	121306424	121306424	+	5'UTR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23040557	23040557	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160932105	160932105	+	RNA	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRBA	987	broad.mit.edu	37	4	151793767	151793767	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40498244	40498244	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356187	42356187	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141092240	141092240	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141242937	141242937	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141625751	141625751	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57602924	57602924	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40136613	40136613	+	Silent	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40788469	40788469	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM3	347731	broad.mit.edu	37	10	68686880	68686880	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160783558	160783558	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA11	4110	broad.mit.edu	37	X	148797640	148797640	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB18	286514	broad.mit.edu	37	X	26157999	26157999	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB4	4115	broad.mit.edu	37	X	30260301	30260301	+	Silent	SNP	C	A	A	rs148486223		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149639223	149639223	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH10	162333	broad.mit.edu	37	17	60813722	60813722	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186943419	186943419	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM10	55388	broad.mit.edu	37	10	13237238	13237238	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN1	57192	broad.mit.edu	37	19	7593514	7593514	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151085515	151085515	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42128673	42128674	+	Intron	DNP	GT	TC	TC			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEN1	4221	broad.mit.edu	37	11	64575348	64575348	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX1	4222	broad.mit.edu	37	17	41738663	41738663	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGEA5	10724	broad.mit.edu	37	10	103550754	103550754	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR223	407008	broad.mit.edu	37	X	65238707	65238707	+	5'Flank	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMADHC	27249	broad.mit.edu	37	2	150438285	150438285	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP8	4317	broad.mit.edu	37	11	102584511	102584511	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174538073	174538073	+	5'Flank	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRB3	253827	broad.mit.edu	37	12	65813061	65813061	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTCP1NB	100272147	broad.mit.edu	37	X	154292295	154292295	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR3	8897	broad.mit.edu	37	22	30421595	30421595	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7878268	7878268	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100532328	100532328	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100677005	100677005	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683857	100683857	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MX1	4599	broad.mit.edu	37	21	42817301	42817301	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3238059	3238059	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBPAP	84073	broad.mit.edu	37	17	48586035	48586035	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10430315	10430315	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10303998	10304000	+	In_Frame_Del	DEL	CTC	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1D	4642	broad.mit.edu	37	17	31107692	31107692	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128394193	128394193	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76602482	76602482	+	5'UTR	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76780283	76780283	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N6AMT2	221143	broad.mit.edu	37	13	21306050	21306050	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101728244	101728244	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145290003	145290003	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144596243	144596243	+	Intron	SNP	A	G	G	rs75225589		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22696597	22696597	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD1	121441	broad.mit.edu	37	12	97330344	97330344	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	21131905	21131906	+	Intron	DEL	CA	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173997312	173997312	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5821878	5821878	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50745449	50745449	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120466412	120466412	+	Silent	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	34243500	34243500	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34790146	34790146	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115349505	115349505	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50699567	50699567	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18757877	18757877	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88735140	88735140	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS3	4940	broad.mit.edu	37	12	113396287	113396287	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM2	4951	broad.mit.edu	37	7	97616196	97616196	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCM2	4951	broad.mit.edu	37	7	97619473	97619473	+	5'Flank	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131235402	131235402	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123785893	123785893	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A25	392138	broad.mit.edu	37	7	143771206	143771206	+	5'Flank	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248154369	248154369	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E1	143503	broad.mit.edu	37	11	4665871	4665871	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55681285	55681285	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A17	26333	broad.mit.edu	37	19	14991763	14991763	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21702821	21702821	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA3	283208	broad.mit.edu	37	11	73979017	73979017	+	Intron	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPN1	8106	broad.mit.edu	37	14	23792073	23792073	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI6	353238	broad.mit.edu	37	1	17699526	17699526	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110342187	110342187	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112816092	112816092	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51620499	51620499	+	Intron	DEL	G	-	-	rs78584401	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91642767	91642767	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56128729	56128729	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719887	140719887	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70180142	70180142	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230505363	230505364	+	Intron	INS	-	GA	GA	rs10624752		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM2	55276	broad.mit.edu	37	4	37839239	37839239	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF3	23469	broad.mit.edu	37	6	64408494	64408494	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18915323	18915323	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICALM	8301	broad.mit.edu	37	11	85782283	85782283	+	5'Flank	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R6	146850	broad.mit.edu	37	17	8730560	8730560	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71549788	71549788	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42048920	42048920	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8708087	8708087	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17056392	17056392	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145796835	145796835	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145796987	145796987	+	Silent	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR5	389158	broad.mit.edu	37	3	146311675	146311675	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131841511	131841511	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118236702	118236702	+	3'UTR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L2	94026	broad.mit.edu	37	6	27278743	27278743	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287895	16287895	+	5'UTR	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37518152	37518152	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37531179	37531179	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CA	5530	broad.mit.edu	37	4	101947129	101947149	+	In_Frame_Del	DEL	TGCGAGGCGGCATCCTCTCAT	-	-	rs151291665		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAME	23532	broad.mit.edu	37	22	22890729	22890729	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47262319	47262319	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64142982	64142982	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68872943	68872943	+	5'Flank	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS1	5631	broad.mit.edu	37	X	106884176	106884176	+	Silent	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR21	643905	broad.mit.edu	37	2	240982117	240982144	+	Frame_Shift_Del	DEL	GTGGGTGAAGAGGCATGGATGAAGGACT	-	-	rs147066740	byFrequency;by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5	55615	broad.mit.edu	37	22	45132724	45132724	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142460823	142460823	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRTFDC1	56952	broad.mit.edu	37	10	25147365	25147365	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79322001	79322001	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150998086	150998086	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43376074	43376074	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11585275	11585275	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70949687	70949687	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8500713	8500713	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	62110244	62110244	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220162287	220162287	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP1	80223	broad.mit.edu	37	8	37732582	37732582	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20663725	20663725	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109380884	109380884	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1B	5908	broad.mit.edu	37	12	69047879	69047879	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM12	10137	broad.mit.edu	37	20	34240404	34240404	+	3'UTR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM17	84991	broad.mit.edu	37	10	6146721	6146721	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48388966	48388966	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCSD1	92241	broad.mit.edu	37	1	167658093	167658093	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8674657	8674657	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117237276	117237276	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG4	340526	broad.mit.edu	37	X	71350439	71350439	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL3	57139	broad.mit.edu	37	19	11507974	11507974	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72435650	72435650	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130912951	130912951	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104928827	104928827	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141832248	141832248	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77147176	77147176	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP2	6102	broad.mit.edu	37	X	46713150	46713150	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPLP0	6175	broad.mit.edu	37	12	120636435	120636435	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7226994	7226994	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36171802	36171802	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39002318	39002318	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947956	237947956	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237993849	237993849	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAFB2	9667	broad.mit.edu	37	19	5595254	5595254	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH1	23328	broad.mit.edu	37	6	148808849	148808849	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCP2	6342	broad.mit.edu	37	1	53460906	53460906	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR42E1	93517	broad.mit.edu	37	16	82033761	82033761	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121658365	121658365	+	Missense_Mutation	SNP	C	T	T	rs145784334	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9154783	9154783	+	Missense_Mutation	SNP	C	T	T	rs138343991	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151107786	151107786	+	Splice_Site	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERP1	27230	broad.mit.edu	37	3	150263949	150263949	+	5'UTR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERP2	387923	broad.mit.edu	37	13	44967171	44967172	+	Intron	DEL	AG	-	-	rs143237482		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61305029	61305029	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB5	5268	broad.mit.edu	37	18	61170670	61170670	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS15	57466	broad.mit.edu	37	21	33073388	33073388	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52067690	52067690	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3KBP1	30011	broad.mit.edu	37	X	19666360	19666360	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC1	54436	broad.mit.edu	37	4	8217932	8217932	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK3	85358	broad.mit.edu	37	22	51160942	51160942	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13297317	13297317	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52031475	52031475	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT2	22933	broad.mit.edu	37	19	39372103	39372103	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A3	64849	broad.mit.edu	37	20	45192027	45192027	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A14	9389	broad.mit.edu	37	3	38355272	38355272	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A24	283238	broad.mit.edu	37	11	62911085	62911085	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A5	283652	broad.mit.edu	37	15	48426633	48426633	+	Silent	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128362812	128362812	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A12	154091	broad.mit.edu	37	6	134350827	134350827	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58033246	58033246	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220502412	220502413	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110741154	110741154	+	3'UTR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70530312	70530312	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21032336	21032336	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168123402	168123402	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA1	6594	broad.mit.edu	37	X	128649931	128649931	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183485194	183485194	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD113-4	767564	broad.mit.edu	37	14	101402744	101402744	+	5'Flank	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP40	9410	broad.mit.edu	37	1	31740734	31740734	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX4	8723	broad.mit.edu	37	3	125179764	125179764	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA19	219938	broad.mit.edu	37	11	133715076	133715076	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220345390	220345390	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228883645	228883645	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158612135	158612135	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131348057	131348057	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN5	51332	broad.mit.edu	37	15	42147101	42147101	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSRP1	6749	broad.mit.edu	37	11	57094710	57094710	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX6	280657	broad.mit.edu	37	X	47972634	47972634	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104118506	104118506	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5098236	5098237	+	Intron	INS	-	CATC	CATC	rs148514673	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1A	6804	broad.mit.edu	37	7	73118706	73118706	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1A	6804	broad.mit.edu	37	7	73118711	73118711	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39964040	39964040	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152555173	152555173	+	Intron	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152770719	152770719	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT9	143425	broad.mit.edu	37	11	7334892	7334892	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85457012	85457012	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23807282	23807282	+	Intron	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D14	57533	broad.mit.edu	37	4	6998032	6998032	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79282220	79282220	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115117580	115117580	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECR	9524	broad.mit.edu	37	19	14674910	14674911	+	Splice_Site	INS	-	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	121000540	121000540	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10411977	10411977	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC5	8563	broad.mit.edu	37	22	29932770	29932770	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43774003	43774003	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43774757	43774757	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC2	117532	broad.mit.edu	37	20	2575626	2575626	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60697893	60697893	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60699470	60699470	+	Silent	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM143	55260	broad.mit.edu	37	19	48867280	48867280	+	5'Flank	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM219	124446	broad.mit.edu	37	16	29982935	29982935	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8B	51754	broad.mit.edu	37	9	35853738	35853738	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8L3	388121	broad.mit.edu	37	15	51361806	51361806	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372257	175372257	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175536734	175536734	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218844252	218844255	+	Intron	DEL	ACAC	-	-	rs72360012		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578550	7578550	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM4	7171	broad.mit.edu	37	19	16197360	16197360	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1488349	1488349	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2	93492	broad.mit.edu	37	13	20068955	20068955	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM44	54765	broad.mit.edu	37	11	35827975	35827975	+	3'UTR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM5	85363	broad.mit.edu	37	11	5949724	5949724	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP6	7205	broad.mit.edu	37	7	100469062	100469062	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC6	7225	broad.mit.edu	37	11	101375222	101375222	+	Silent	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73236103	73236103	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234839292	234839292	+	Intron	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D4	81628	broad.mit.edu	37	7	100075243	100075243	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51629111	51629111	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTR	7276	broad.mit.edu	37	18	29178683	29178683	+	3'UTR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1	55253	broad.mit.edu	37	7	66532398	66532398	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103316092	103316092	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69682436	69682436	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UIMC1	51720	broad.mit.edu	37	5	176335495	176335495	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33496891	33496891	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF1	5976	broad.mit.edu	37	19	18971211	18971211	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229772543	229772543	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78204952	78204952	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61433142	61433142	+	Intron	SNP	A	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP15	84135	broad.mit.edu	37	5	72868501	72868501	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	113411877	113411877	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38944394	38944394	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42617542	42617542	+	IGR	SNP	T	C	C	rs147022412	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42700107	42700108	+	IGR	INS	-	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42776641	42776641	+	IGR	SNP	A	G	G	rs77385886		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51010069	51010070	+	IGR	INS	-	T	T	rs141520573	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8200740	8200740	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8577296	8577296	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	130999446	130999446	+	IGR	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	13163020	13163021	+	IGR	DEL	AG	-	-	rs141719686		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	27839401	27839401	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45429294	45429294	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49007466	49007466	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55523037	55523037	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91886027	91886027	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	100834478	100834478	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108781082	108781082	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128092011	128092011	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	21561648	21561669	+	IGR	DEL	GTGTGTGTGTGTGTGTGTGTGT	-	-	rs72333559		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	25956786	25956786	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2851934	2851934	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34464332	34464332	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34464506	34464506	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38597029	38597029	+	IGR	DEL	C	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	66051764	66051764	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	68166445	68166445	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97295380	97295380	+	IGR	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19526944	19526944	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	44544679	44544679	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53983516	53983516	+	IGR	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	61662876	61662876	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65884928	65884928	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	82440665	82440665	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101817574	101817574	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19422252	19422252	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807019	19807019	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28311181	28311181	+	IGR	SNP	T	C	C	rs117373697	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43665524	43665524	+	IGR	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43840378	43840378	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	49840955	49840955	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57438260	57438260	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96486426	96486426	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98448844	98448844	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	100431575	100431575	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20115223	20115223	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20433940	20433941	+	IGR	DNP	GC	TT	TT			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21365567	21365567	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22412503	22412503	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53230084	53230084	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	70852818	70852818	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79529155	79529155	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	87666519	87666519	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	89619102	89619102	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399771	32399772	+	IGR	DEL	TG	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489708	32489708	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32846286	32846286	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32846952	32846952	+	IGR	SNP	T	C	C	rs77569712		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32849742	32849742	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32850611	32850611	+	IGR	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32851602	32851602	+	IGR	SNP	A	G	G	rs138810340	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33410727	33410727	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33419657	33419657	+	IGR	SNP	C	G	G	rs76160916		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33500898	33500898	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33520442	33520442	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33976605	33976605	+	IGR	DEL	G	-	-	rs147613485		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35232618	35232618	+	IGR	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46393179	46393179	+	IGR	SNP	A	T	T	rs28838878		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46469943	46469943	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	47824413	47824414	+	IGR	INS	-	C	C	rs142861401	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49230512	49230512	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	58120612	58120612	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	73974623	73974623	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	75536519	75536519	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25271945	25271945	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25283872	25283872	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	54054465	54054465	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39399121	39399121	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49371728	49371728	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70285789	70285789	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31185569	31185569	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32032835	32032835	+	IGR	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43719496	43719496	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44914256	44914256	+	IGR	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	8863844	8863844	+	IGR	SNP	G	T	T	rs139012526	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149030321	149030321	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149090600	149090600	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158101443	158101443	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158850787	158850787	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172673921	172673921	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203439041	203439041	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208870659	208870659	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213752363	213752363	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219460539	219460539	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	220495193	220495193	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	232771234	232771234	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	235005228	235005230	+	IGR	DEL	CTC	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	237148560	237148560	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238654709	238654709	+	IGR	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248085366	248085366	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249097940	249097940	+	IGR	SNP	T	C	C	rs111418924		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30256424	30256424	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80168730	80168730	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80332959	80332959	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	91489728	91489728	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29430385	29430385	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29451386	29451386	+	IGR	SNP	G	A	A	rs74330722		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29582304	29582304	+	IGR	SNP	C	T	T	rs113495693	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	54697253	54697254	+	IGR	DNP	AC	TA	TA			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11121041	11121041	+	IGR	SNP	C	T	T	rs77836453		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9466958	9466958	+	IGR	SNP	A	C	C	rs140864616	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	35995313	35995313	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105388123	105388123	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	108894064	108894064	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118431494	118431494	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133055845	133055845	+	IGR	SNP	G	T	T	rs149847825	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162358914	162358914	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168532639	168532639	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208122261	208122261	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208922449	208922449	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	239515176	239515176	+	IGR	DEL	G	-	-	rs77567752		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	487649	487649	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	5692889	5692889	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6360759	6360760	+	IGR	INS	-	C	C	rs143813378	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76321054	76321054	+	IGR	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79325644	79325644	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81275973	81275973	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81423779	81423779	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84316700	84316700	+	IGR	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91659241	91659241	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92028630	92028630	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96426253	96426253	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	104974106	104974106	+	IGR	DEL	A	-	-	rs146181647		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	106191713	106191713	+	IGR	DEL	T	-	-	rs138455627		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	132662839	132662840	+	IGR	DEL	AC	-	-	rs145051287		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155705194	155705194	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	157714678	157714679	+	IGR	INS	-	AC	AC	rs113329179		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161882305	161882306	+	IGR	INS	-	A	A	rs144233504	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186479401	186479401	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	196714272	196714272	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96496293	96496293	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	110476728	110476728	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	138369357	138369357	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	146379028	146379028	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16362436	16362436	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179125495	179125495	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18264903	18264903	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190647283	190647283	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	25625056	25625056	+	IGR	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27162862	27162863	+	IGR	INS	-	T	T	rs143128646	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36509343	36509343	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49215441	49215441	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63753629	63753629	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69991588	69991588	+	IGR	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	81002065	81002065	+	IGR	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123549623	123549623	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	128147473	128147473	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	163334311	163334311	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304068	23304068	+	IGR	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29003342	29003343	+	IGR	DNP	CC	AA	AA			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34544194	34544195	+	IGR	DNP	AG	TT	TT			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	55885718	55885718	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	66889508	66889508	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7300327	7300327	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	74279546	74279546	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8562276	8562276	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99284023	99284023	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	111377363	111377363	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	120090894	120090894	+	IGR	DEL	A	-	-	rs34283356		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133189676	133189676	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160319755	160319759	+	IGR	DEL	CCTCC	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19348863	19348863	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58576029	58576029	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108634302	108634302	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143748437	143748437	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930958	53930958	+	IGR	DEL	C	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55780254	55780254	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56231136	56231136	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57290531	57290531	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57418027	57418027	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57669524	57669524	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57712434	57712434	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61827297	61827297	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62694311	62694311	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63354084	63354084	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	71217614	71217614	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96088757	96088757	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	1156492	1156492	+	IGR	SNP	G	T	T	rs144261541	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116781064	116781064	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136822341	136822341	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137274455	137274455	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20308271	20308271	+	IGR	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34799737	34799737	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	40884502	40884502	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47341564	47341564	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83995906	83995906	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89810767	89810767	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94904719	94904719	+	IGR	DEL	G	-	-	rs35911249		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	115823930	115823930	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	118229830	118229830	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120759414	120759414	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	33602535	33602535	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35971784	35971784	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43400277	43400277	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66480875	66480875	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68383784	68383784	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68461764	68461764	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69974448	69974448	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78269035	78269035	+	IGR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81052805	81052805	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	108463804	108463804	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	10950002	10950002	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	109872174	109872174	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	114659988	114659988	+	IGR	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134809296	134809297	+	IGR	DNP	GG	TT	TT			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135154753	135154753	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	17920067	17920067	+	IGR	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39018614	39018614	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57792877	57792877	+	IGR	SNP	T	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	58532448	58532448	+	IGR	SNP	T	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65180151	65180151	+	IGR	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65718189	65718189	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	83004843	83004843	+	IGR	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84389848	84389848	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	8949313	8949313	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	99411198	99411198	+	IGR	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59002478	59002478	+	IGR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	59017594	59017594	+	IGR	SNP	A	G	G	rs75012383		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIL1	7429	broad.mit.edu	37	2	219294221	219294221	+	Intron	SNP	A	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	37041396	37041396	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VKORC1L1	154807	broad.mit.edu	37	7	65418940	65418940	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133050161	133050161	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79985620	79985620	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100423445	100423445	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK2	7444	broad.mit.edu	37	2	58313620	58313620	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98846489	98846489	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH3P	374666	broad.mit.edu	37	15	102516473	102516473	+	3'UTR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71130408	71130408	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124140704	124140704	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDTC1	23038	broad.mit.edu	37	1	27614294	27614294	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT2B	7482	broad.mit.edu	37	1	113033704	113033704	+	Splice_Site	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78229209	78229209	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128901799	128901799	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21860756	21860756	+	Silent	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17294464	17294464	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YY1AP1	55249	broad.mit.edu	37	1	155637695	155637698	+	Intron	DEL	ATAC	-	-	rs111381393		TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100350349	100350349	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12B	340554	broad.mit.edu	37	X	64722025	64722025	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC11	79844	broad.mit.edu	37	5	843743	843743	+	Silent	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC17	23390	broad.mit.edu	37	12	77220633	77220633	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135552765	135552765	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND11	10771	broad.mit.edu	37	10	267073	267073	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF157	7712	broad.mit.edu	37	X	47272470	47272470	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF276	92822	broad.mit.edu	37	16	89804205	89804214	+	Splice_Site	DEL	CCCTCTCAGA	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF285	26974	broad.mit.edu	37	19	44892196	44892196	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF382	84911	broad.mit.edu	37	19	37117340	37117340	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37618016	37618016	+	Intron	SNP	C	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF442	79973	broad.mit.edu	37	19	12474456	12474456	+	5'UTR	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF485	220992	broad.mit.edu	37	10	44112694	44112694	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF500	26048	broad.mit.edu	37	16	4812491	4812491	+	Intron	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	59165	59165	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF645	158506	broad.mit.edu	37	X	22291637	22291637	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF735	730291	broad.mit.edu	37	7	63673421	63673421	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF746	155061	broad.mit.edu	37	7	149191294	149191294	+	Splice_Site	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF789	285989	broad.mit.edu	37	7	99081329	99081329	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185798372	185798372	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58565207	58565207	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134664757	134664757	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	134356750	134356750	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22251397	22251397	+	Intron	SNP	T	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22891771	22891771	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34984421	34984421	+	Intron	DEL	C	-	-			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70992376	70992377	+	RNA	INS	-	TCAG	TCAG	rs148210244	by1000genomes	TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121115014	121115014	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143428864	143428864	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146441144	146441144	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28793101	28793101	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	8315701	8315701	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044417	90044417	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90092170	90092170	+	Intron	SNP	G	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90139104	90139104	+	RNA	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	155598916	155598916	+	Intron	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190823458	190823458	+	Intron	SNP	A	G	G			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152309580	152309580	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	28927373	28927373	+	RNA	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124428	142124428	+	Intron	SNP	C	A	A			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63205261	63205261	+	5'Flank	SNP	G	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66456714	66456714	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66456866	66456866	+	Intron	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66457977	66457977	+	5'Flank	SNP	G	C	C			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	4476	4476	+	5'Flank	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	6463	6463	+	5'UTR	SNP	C	T	T			TCGA-17-Z001-01A-01W-0746-08	TCGA-17-Z001-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
