Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7714899	7714899	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARSD1	80755	broad.mit.edu	37	17	41105823	41105823	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67149889	67149889	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67150315	67150315	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67170783	67170784	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67212184	67212184	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215847000	215847000	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48311678	48311678	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66986245	66986245	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67041593	67041593	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87195636	87195636	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16170136	16170136	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183699462	183699462	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17448537	17448537	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17450162	17450162	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179076925	179076925	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89386832	89386832	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD7	414149	broad.mit.edu	37	10	15057491	15057491	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCSL	390110	broad.mit.edu	37	11	44071686	44071686	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACHE	43	broad.mit.edu	37	7	100491327	100491327	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSBG2	81616	broad.mit.edu	37	19	6156604	6156604	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSF3	197322	broad.mit.edu	37	16	89211619	89211619	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20556481	20556481	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20439154	20439154	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229568617	229568617	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236891006	236891006	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66322868	66322868	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123301461	123301461	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156957829	156957829	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106134519	106134519	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106444747	106444747	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106602663	106602663	+	RNA	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106800362	106800362	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106849157	106849157	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106877724	106877724	+	RNA	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107048907	107048907	+	RNA	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107159913	107159913	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72503391	72503391	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5182313	5182313	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100636507	100636507	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43824150	43824150	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178552110	178552110	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73175338	73175338	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73185000	73185000	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS8	11095	broad.mit.edu	37	11	130275920	130275920	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84706472	84706472	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7626456	7626456	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7690715	7690715	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123049914	123049914	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100237162	100237162	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100131292	100131292	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1A	148	broad.mit.edu	37	8	26721813	26721813	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100210038	100210038	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150815200	150815200	+	Intron	DEL	G	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62287345	62287345	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186338572	186338572	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP1	8165	broad.mit.edu	37	17	55190032	55190032	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP3	10566	broad.mit.edu	37	12	4744564	4744564	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A1	216	broad.mit.edu	37	9	75554984	75554984	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125856620	125856620	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A2	224	broad.mit.edu	37	17	19555964	19555964	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10B	144245	broad.mit.edu	37	12	38712250	38712250	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5128824	5128824	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOTL1	154810	broad.mit.edu	37	11	94603863	94603863	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108509556	108509556	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT2	285	broad.mit.edu	37	8	6371302	6371302	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41585513	41585513	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114223920	114223920	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114260527	114260527	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114280094	114280094	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95501897	95501897	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95501935	95501935	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37508121	37508121	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD46	157567	broad.mit.edu	37	8	101563906	101563906	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO1	55107	broad.mit.edu	37	11	69933992	69933992	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO1	55107	broad.mit.edu	37	11	69972210	69972210	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5672676	5672676	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO2	57101	broad.mit.edu	37	12	5674857	5674857	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26655757	26655757	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101413952	101413952	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45822988	45822988	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201488583	201488583	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1S1	1174	broad.mit.edu	37	7	100802404	100802405	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APEX1	328	broad.mit.edu	37	14	20923978	20923978	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLNR	187	broad.mit.edu	37	11	57004500	57004500	+	5'UTR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOA2	336	broad.mit.edu	37	1	161192312	161192312	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC4	403314	broad.mit.edu	37	1	183617945	183617945	+	5'UTR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21241818	21241818	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21263909	21263909	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58543708	58543708	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP1	358	broad.mit.edu	37	7	30961709	30961709	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141052924	141052924	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFIP2	23647	broad.mit.edu	37	11	6500084	6500084	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP22	58504	broad.mit.edu	37	10	49667674	49667674	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86491812	86491812	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128839071	128839071	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130215894	130215894	+	Splice_Site	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11196310	11196310	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF10L	55160	broad.mit.edu	37	1	17914164	17914164	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156907157	156907157	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156916722	156916722	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF37	389337	broad.mit.edu	37	5	148999941	148999941	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF3	50650	broad.mit.edu	37	3	56789124	56789124	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131704167	131704167	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1A	8289	broad.mit.edu	37	1	27097665	27097665	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46230774	46230774	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34621496	34621496	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX2	9823	broad.mit.edu	37	X	100911627	100911627	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3002385	3002385	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSG	22901	broad.mit.edu	37	17	66352974	66352974	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66862970	66862970	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66943742	66943742	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB2	51676	broad.mit.edu	37	14	94420762	94420762	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177136781	177136781	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177142500	177142500	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	100978227	100978227	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119737578	119737578	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976836	119976837	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124371467	124371467	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96761801	96761801	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108143387	108143387	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10A	57194	broad.mit.edu	37	15	25936934	25936934	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160025671	160025671	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47574221	47574221	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11B	23200	broad.mit.edu	37	3	182584169	182584169	+	Silent	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138828127	138828127	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193182776	193182776	+	Frame_Shift_Del	DEL	G	-	-	rs146360602		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A1	476	broad.mit.edu	37	1	116940601	116940601	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36050743	36050743	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1B2	526	broad.mit.edu	37	8	20066915	20066915	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1E2	90423	broad.mit.edu	37	2	46739635	46739635	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1H	51606	broad.mit.edu	37	8	54714354	54714354	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50211081	50211081	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117024724	117024724	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117278892	117278892	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN2L	11273	broad.mit.edu	37	16	28837215	28837215	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AURKB	9212	broad.mit.edu	37	17	8110763	8110763	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69599436	69599436	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69599588	69599588	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT5	10317	broad.mit.edu	37	21	41032397	41032397	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACH2	60468	broad.mit.edu	37	6	90661568	90661568	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038703	11038703	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143558885	143558885	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102994847	102994847	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	59115404	59115404	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165547235	165547235	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDKRB2	624	broad.mit.edu	37	14	96706899	96706899	+	Silent	SNP	C	A	A	rs146975044		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32836671	32836671	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11405588	11405588	+	Silent	SNP	C	A	A	rs149393791	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55746101	55746101	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13602301	13602301	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL1	80341	broad.mit.edu	37	20	31603373	31603373	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPNT1	10380	broad.mit.edu	37	1	220236273	220236273	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50192205	50192205	+	Splice_Site	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15350220	15350220	+	Missense_Mutation	SNP	G	T	T	rs150535175		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD9	114781	broad.mit.edu	37	6	38548125	38548125	+	Silent	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56382730	56382730	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf10	11067	broad.mit.edu	37	10	45473262	45473262	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf40	143501	broad.mit.edu	37	11	4598906	4598906	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33581349	33581349	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf52	91894	broad.mit.edu	37	11	111796789	111796789	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf53	341032	broad.mit.edu	37	11	111156581	111156581	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf102	55051	broad.mit.edu	37	14	90754624	90754624	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf109	26175	broad.mit.edu	37	14	93651864	93651864	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81380596	81380596	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91666348	91666348	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf177	283598	broad.mit.edu	37	14	99183605	99183605	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922853	24922853	+	Missense_Mutation	SNP	C	A	A	rs113030613	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf39	56905	broad.mit.edu	37	15	75499143	75499143	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf82	162083	broad.mit.edu	37	16	27078164	27078164	+	5'Flank	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf46	124783	broad.mit.edu	37	17	43332557	43332557	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf64	124773	broad.mit.edu	37	17	58506867	58506867	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30969551	30969551	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF1	114897	broad.mit.edu	37	17	77043818	77043818	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf101	257044	broad.mit.edu	37	1	244724073	244724073	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf127	148345	broad.mit.edu	37	1	11008106	11008106	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf158	93190	broad.mit.edu	37	1	12815839	12815839	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75072442	75072442	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf21	81563	broad.mit.edu	37	1	184567578	184567578	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf35	79169	broad.mit.edu	37	1	228289028	228289028	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf59	113802	broad.mit.edu	37	1	109193887	109193887	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf95	375057	broad.mit.edu	37	1	226784445	226784445	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172557949	172557949	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9498868	9498868	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9510550	9510550	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20270927	20270927	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf27	54976	broad.mit.edu	37	20	3736319	3736319	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf47	79568	broad.mit.edu	37	2	200821014	200821014	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf55	343990	broad.mit.edu	37	2	99413902	99413902	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf38	285237	broad.mit.edu	37	3	88199144	88199144	+	5'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207300151	207300151	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81308173	81308173	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5961217	5961217	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf36	285600	broad.mit.edu	37	5	93928875	93928875	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165711304	165711304	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf154	221424	broad.mit.edu	37	6	43477372	43477372	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118953774	118953774	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127898419	127898419	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40909774	40909774	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf33	202865	broad.mit.edu	37	7	148288076	148288076	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57372415	57372415	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57417949	57417949	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39341788	39341788	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53766747	53766747	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181702695	181702695	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181706782	181706782	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40078528	40078528	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54871332	54871333	+	Intron	DNP	GG	TT	TT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54925360	54925360	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG6	59285	broad.mit.edu	37	19	54501419	54501419	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62385122	62385122	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62751681	62751681	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27455904	27455904	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14992724	14992724	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCB	797	broad.mit.edu	37	11	15096627	15096627	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188248002	188248002	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44283045	44283045	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND1	55832	broad.mit.edu	37	12	67691106	67691106	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND2	23066	broad.mit.edu	37	3	12858463	12858463	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230916216	230916216	+	Intron	DEL	G	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN1	4076	broad.mit.edu	37	11	34118203	34118203	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78165350	78165350	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD18	59082	broad.mit.edu	37	11	105010544	105010544	+	5'Flank	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN1	57524	broad.mit.edu	37	16	2237242	2237242	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER1	117144	broad.mit.edu	37	11	65793907	65793907	+	5'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC112	153733	broad.mit.edu	37	5	114607061	114607061	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31592621	31592621	+	5'UTR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC138	165055	broad.mit.edu	37	2	109455699	109455699	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179732896	179732896	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC18	343099	broad.mit.edu	37	1	93702067	93702067	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC45	90799	broad.mit.edu	37	17	62533676	62533676	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111345221	111345221	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC99	54908	broad.mit.edu	37	5	169028388	169028388	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL13	6357	broad.mit.edu	37	17	32684527	32684527	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNH	902	broad.mit.edu	37	5	86705175	86705175	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNL1	57018	broad.mit.edu	37	3	156867082	156867082	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7521404	7521404	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7559427	7559427	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7656250	7656250	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158226612	158226612	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158227279	158227279	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158147259	158147259	+	5'Flank	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1L	344807	broad.mit.edu	37	3	112546420	112546420	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD84	8832	broad.mit.edu	37	1	160535445	160535445	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25C	995	broad.mit.edu	37	5	137661711	137661711	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21755777	21755777	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21760810	21760810	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95174219	95174219	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95186170	95186170	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73544081	73544081	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73550110	73550110	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25583117	25583117	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85972974	85972975	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92247587	92247587	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18622562	18622562	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL2	124359	broad.mit.edu	37	16	80646674	80646674	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM18	729767	broad.mit.edu	37	19	51983931	51983931	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM20	125931	broad.mit.edu	37	19	45024484	45024484	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2A	63036	broad.mit.edu	37	1	15789224	15789224	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF5	60680	broad.mit.edu	37	19	3251064	3251064	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104066634	104066634	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104098240	104098240	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214830567	214830567	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13069268	13069268	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP290	80184	broad.mit.edu	37	12	88482764	88482764	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP70	80321	broad.mit.edu	37	3	138227117	138227117	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETP	1071	broad.mit.edu	37	16	57005229	57005229	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31912436	31912436	+	5'Flank	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CH25H	9023	broad.mit.edu	37	10	90966765	90966765	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1L	9557	broad.mit.edu	37	1	146756783	146756783	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRDL1	91851	broad.mit.edu	37	X	110002839	110002839	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184098565	184098565	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136700864	136700864	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA9	55584	broad.mit.edu	37	4	40350888	40350888	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRND	1144	broad.mit.edu	37	2	233396169	233396169	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP2	148113	broad.mit.edu	37	19	19654863	19654863	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIRH1A	84916	broad.mit.edu	37	16	69202673	69202673	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP1	23332	broad.mit.edu	37	2	122217471	122217471	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87033185	87033185	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87041101	87041101	+	Silent	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143029488	143029488	+	Intron	SNP	C	A	A	rs139370833	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143043575	143043575	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC14A	161198	broad.mit.edu	37	14	38724497	38724497	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSPN	63967	broad.mit.edu	37	1	36226707	36226707	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTA	1211	broad.mit.edu	37	9	36303814	36303814	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123377050	123377050	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99012816	99012816	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57918246	57918246	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87591486	87591486	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR1	10256	broad.mit.edu	37	1	26509805	26509805	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21488899	21488899	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNN1	1264	broad.mit.edu	37	19	11660455	11660455	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT6L	246175	broad.mit.edu	37	4	78669518	78669518	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNRIP1	25927	broad.mit.edu	37	2	68544274	68544274	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205034237	205034237	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74385657	74385657	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74414540	74414540	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3072391	3072391	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1367377	1367377	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146826035	146826035	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76501257	76501257	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125204414	125204414	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125204434	125204434	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125521289	125521289	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COASY	80347	broad.mit.edu	37	17	40716806	40716806	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBRA1	25920	broad.mit.edu	37	9	140150783	140150783	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75842970	75842970	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71655252	71655252	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94034938	94034938	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139668133	139668133	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139668138	139668138	+	Splice_Site	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139675980	139675980	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139729136	139729136	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139825091	139825091	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139890307	139890307	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7476975	7476975	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130159389	130159389	+	Silent	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189871662	189871662	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107920671	107920671	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107923871	107923871	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107438493	107438493	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107554108	107554108	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238266378	238266378	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238267962	238267962	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130284196	130284197	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC12	81035	broad.mit.edu	37	18	331641	331641	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD9	29099	broad.mit.edu	37	11	36298707	36298707	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160304984	160304984	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX8C	341947	broad.mit.edu	37	14	93814419	93814419	+	Missense_Mutation	SNP	C	G	G	rs113042438		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130002838	130002838	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA6	57094	broad.mit.edu	37	8	68340384	68340384	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28747824	28747824	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPLX2	10814	broad.mit.edu	37	5	175306002	175306002	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE3	8895	broad.mit.edu	37	8	87541165	87541165	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211452731	211452731	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211454988	211454989	+	Intron	DEL	TG	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211542380	211542380	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207642565	207642565	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREG2	200407	broad.mit.edu	37	2	102000066	102000066	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43884541	43884541	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNKL1	51340	broad.mit.edu	37	20	20018210	20018210	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB3	1417	broad.mit.edu	37	22	25599901	25599901	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYZ	1429	broad.mit.edu	37	1	75175924	75175924	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF1R	1436	broad.mit.edu	37	5	149449436	149449436	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3263598	3263598	+	Silent	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34076770	34076770	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34100922	34100922	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113246670	113246670	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113316852	113316852	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113317128	113317128	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113599536	113599536	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126714570	126714570	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA1	1495	broad.mit.edu	37	5	138160263	138160263	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11384837	11384837	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732209	11732209	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25042809	25042809	+	3'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSS	1520	broad.mit.edu	37	1	150722682	150722682	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17113474	17113474	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL3	8452	broad.mit.edu	37	2	225362547	225362547	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43152140	43152140	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43167157	43167157	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107274828	107274829	+	Intron	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CX3CL1	6376	broad.mit.edu	37	16	57416300	57416300	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL6	6372	broad.mit.edu	37	4	74702983	74702983	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR2P1	3580	broad.mit.edu	37	2	218924946	218924946	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36156083	36156083	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5D1	124637	broad.mit.edu	37	17	7761775	7761775	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37652839	37652839	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143956492	143956492	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143996211	143996211	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP19A1	1588	broad.mit.edu	37	15	51504904	51504904	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96535209	96535209	+	Silent	SNP	C	A	A	rs149590953		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP46A1	10858	broad.mit.edu	37	14	100166319	100166319	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16032983	16032983	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16045104	16045104	+	Missense_Mutation	SNP	A	T	T	rs142973676		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15807349	15807349	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7A1	1581	broad.mit.edu	37	8	59410854	59410854	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27840827	27840827	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57489188	57489188	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39383131	39383131	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85769355	85769355	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100715330	100715330	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF5	8816	broad.mit.edu	37	14	69521853	69521853	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8	50717	broad.mit.edu	37	1	160252958	160252958	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCBLD2	131566	broad.mit.edu	37	3	98600395	98600395	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2	51473	broad.mit.edu	37	6	24357736	24357736	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTD	1635	broad.mit.edu	37	4	183815714	183815714	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTPP1	79077	broad.mit.edu	37	16	30435740	30435740	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D3	123879	broad.mit.edu	37	16	20871399	20871399	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDAH2	23564	broad.mit.edu	37	6	31695781	31695781	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49237828	49237828	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX3Y	8653	broad.mit.edu	37	Y	15027209	15027209	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX4	54514	broad.mit.edu	37	5	55094236	55094236	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX50	79009	broad.mit.edu	37	10	70670245	70670245	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX56	54606	broad.mit.edu	37	7	44612371	44612371	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA4	1669	broad.mit.edu	37	8	6793705	6793705	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB112	245915	broad.mit.edu	37	6	50011298	50011298	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29978326	29978326	+	5'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB125	245938	broad.mit.edu	37	20	76964	76964	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1C	79958	broad.mit.edu	37	19	6468428	6468428	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115079855	115079855	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115143518	115143518	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31687607	31687607	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC1B	55789	broad.mit.edu	37	5	59943224	59943224	+	Splice_Site	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14647102	14647103	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14741215	14741215	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137075986	137075986	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137407425	137407425	+	Intron	SNP	G	C	C	rs140024317		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS2	10202	broad.mit.edu	37	14	24114260	24114260	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS7C	201140	broad.mit.edu	37	17	9676069	9676069	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX15	1665	broad.mit.edu	37	4	24541735	24541735	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX34	9704	broad.mit.edu	37	19	47879114	47879114	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154034036	154034036	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH1	1729	broad.mit.edu	37	5	140961926	140961926	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60616851	60616851	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95570155	95570155	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95579389	95579389	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	387246	387246	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83544911	83544911	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83878098	83878098	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79581697	79581697	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35370205	35370206	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLK1	8788	broad.mit.edu	37	14	101201246	101201246	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX4	1748	broad.mit.edu	37	17	48051292	48051292	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124391555	124391555	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124350561	124350561	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21640543	21640543	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76565323	76565323	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52383115	52383115	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20996668	20996668	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13820439	13820439	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196619063	196619063	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196889177	196889177	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196913108	196913108	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38705826	38705826	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38890849	38890849	+	Missense_Mutation	SNP	G	C	C	rs141263020	byFrequency	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11511387	11511387	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11572432	11572432	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11607656	11607656	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA2	10294	broad.mit.edu	37	16	46993386	46993386	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC8	22826	broad.mit.edu	37	1	28555403	28555403	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP1	116092	broad.mit.edu	37	20	44429810	44429811	+	Intron	INS	-	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169097588	169097588	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169101390	169101390	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169174291	169174291	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169230220	169230220	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169506115	169506115	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111387424	111387424	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25231992	25231992	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116525852	116525852	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154264015	154264015	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154379867	154379867	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154679379	154679379	+	Intron	SNP	C	T	T	rs146390250	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154684293	154684293	+	3'UTR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64020297	64020297	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27163050	27163050	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRAP1	10589	broad.mit.edu	37	11	65687838	65687838	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD3	1814	broad.mit.edu	37	3	113850266	113850266	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100505800	100505800	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117310154	117310154	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41427699	41427699	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41539140	41539140	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41684064	41684064	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSEL	92126	broad.mit.edu	37	18	65178453	65178453	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG2	1829	broad.mit.edu	37	18	29126202	29126202	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32409131	32409131	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32428317	32428317	+	Silent	SNP	G	T	T	rs144776465	byFrequency	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32462013	32462013	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX1	1840	broad.mit.edu	37	12	113515191	113515191	+	Intron	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167096069	167096069	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK4	8798	broad.mit.edu	37	12	4708299	4708299	+	Silent	SNP	G	T	T	rs138577409	byFrequency	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71744062	71744062	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71891327	71891327	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207575338	207575338	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137805899	137805899	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108409751	108409751	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EAF2	55840	broad.mit.edu	37	3	121554257	121554257	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBNA1BP2	10969	broad.mit.edu	37	1	43630300	43630300	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE1	1889	broad.mit.edu	37	1	21605684	21605684	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93226317	93226317	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1E1	9521	broad.mit.edu	37	6	8080125	8080125	+	Nonstop_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34400394	34400394	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD3	30845	broad.mit.edu	37	2	31484531	31484531	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK4	440275	broad.mit.edu	37	15	40253982	40253982	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184043513	184043513	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50642944	50642944	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37382322	37382322	+	Translation_Start_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO2	63916	broad.mit.edu	37	20	45022100	45022100	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107501343	107501343	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107514323	107514323	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL3	83401	broad.mit.edu	37	10	103986431	103986431	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79383636	79383636	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100367277	100367277	+	Silent	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132176177	132176177	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD6	955	broad.mit.edu	37	20	25193996	25193996	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34761684	34761684	+	Splice_Site	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPDR1	54749	broad.mit.edu	37	7	37988507	37988507	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38227522	38227522	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89468469	89468469	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93964337	93964337	+	Intron	DEL	T	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94066637	94066637	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22895780	22895780	+	Splice_Site	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142562017	142562017	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPT1	85465	broad.mit.edu	37	2	26609319	26609319	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212295768	212295768	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103514784	103514784	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERG	2078	broad.mit.edu	37	21	39774447	39774447	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERP44	23071	broad.mit.edu	37	9	102814756	102814756	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216850597	216850597	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216850620	216850620	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128333509	128333509	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128359246	128359246	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS2	2114	broad.mit.edu	37	21	40194596	40194596	+	Splice_Site	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV5	2119	broad.mit.edu	37	3	185775021	185775021	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5633700	5633700	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242020668	242020668	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	576816	576816	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXT2	2132	broad.mit.edu	37	11	44219322	44219322	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164761	139164761	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139165438	139165438	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139323180	139323180	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM149A	25854	broad.mit.edu	37	4	187073249	187073249	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153A	285596	broad.mit.edu	37	5	177158587	177158587	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169B	283777	broad.mit.edu	37	15	98982994	98982994	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62147338	62147338	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3D	131177	broad.mit.edu	37	3	58620229	58620229	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129098167	129098167	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148840	34148840	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34150081	34150081	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37028542	37028542	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37029164	37029164	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM53B	9679	broad.mit.edu	37	10	126395314	126395314	+	5'UTR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55A	120400	broad.mit.edu	37	11	114401094	114401094	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55B	120406	broad.mit.edu	37	11	114569357	114569357	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067308	190067308	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM70B	348013	broad.mit.edu	37	13	114514724	114514724	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM73A	374986	broad.mit.edu	37	1	78309084	78309084	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43628608	43628608	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43629138	43629138	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54735414	54735414	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54805191	54805191	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124787528	124787528	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCB	2187	broad.mit.edu	37	X	14871184	14871184	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92086419	92086419	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92086802	92086802	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92087706	92087706	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92533553	92533553	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92623945	92623945	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126337718	126337718	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126373264	126373264	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBF1	85302	broad.mit.edu	37	17	73934199	73934199	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127622342	127622342	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127671773	127671773	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL3	26224	broad.mit.edu	37	13	77581683	77581683	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15928267	15928267	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15937086	15937086	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO11	80204	broad.mit.edu	37	2	48060016	48060016	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO31	79791	broad.mit.edu	37	16	87380904	87380904	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO41	150726	broad.mit.edu	37	2	73492457	73492457	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW11	23291	broad.mit.edu	37	5	171326144	171326144	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40368249	40368249	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157660280	157660280	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157559361	157559361	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL6	343413	broad.mit.edu	37	1	159785243	159785243	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L5	90342	broad.mit.edu	37	2	97368551	97368551	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125115453	125115453	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERMT3	83706	broad.mit.edu	37	11	63974949	63974949	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108516633	108516633	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGB	2244	broad.mit.edu	37	4	155490722	155490722	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95773416	95773416	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14862492	14862492	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF23	8074	broad.mit.edu	37	12	4479598	4479598	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135290120	135290120	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBIN	387758	broad.mit.edu	37	11	27016683	27016683	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152325345	152325345	+	Silent	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279965	152279965	+	Missense_Mutation	SNP	G	T	T	rs149160509		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128651903	128651903	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ37543	285668	broad.mit.edu	37	5	60982794	60982794	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128487707	128487707	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128492680	128492680	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28886159	28886159	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240307063	240307063	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240307783	240307783	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171244600	171244600	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1NB	158521	broad.mit.edu	37	X	147062975	147062975	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXJ2	55810	broad.mit.edu	37	12	8205317	8205317	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN3	1112	broad.mit.edu	37	14	89747222	89747222	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXR1	283150	broad.mit.edu	37	11	118849710	118849710	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52272424	52272424	+	Silent	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR3	2359	broad.mit.edu	37	19	52328054	52328054	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79158662	79158662	+	Splice_Site	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79204011	79204011	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79207453	79207453	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14748557	14748557	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85924572	85924572	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85987913	85987913	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRS2	10818	broad.mit.edu	37	12	69965981	69965981	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32839660	32839660	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975660	44975660	+	Silent	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132763527	132763527	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37411795	37411795	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD2	23070	broad.mit.edu	37	6	37427269	37427269	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD7	53822	broad.mit.edu	37	19	35642099	35642099	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G6PC2	57818	broad.mit.edu	37	2	169764517	169764517	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161281137	161281137	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161281255	161281255	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161322971	161322971	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46930701	46930701	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27185050	27185050	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161119019	161119019	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46060227	46060227	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161522611	161522611	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26508113	26508113	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88420727	88420727	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88432009	88432009	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31215860	31215860	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL5	168391	broad.mit.edu	37	7	151700085	151700085	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAP43	2596	broad.mit.edu	37	3	115342578	115342578	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153784646	153784646	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBX1	2636	broad.mit.edu	37	7	150864102	150864102	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34128684	34128684	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120572172	120572172	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT1	2650	broad.mit.edu	37	9	79117275	79117275	+	5'UTR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEFT	115557	broad.mit.edu	37	12	58009224	58009224	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117824122	117824122	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117853300	117853300	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117885056	117885056	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958956	61958956	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHDC	84514	broad.mit.edu	37	17	40344424	40344424	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHITM	27069	broad.mit.edu	37	10	85912133	85912133	+	3'UTR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP4	55303	broad.mit.edu	37	7	150269488	150269488	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP6	474344	broad.mit.edu	37	7	150325647	150325647	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78560826	78560826	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJD2	57369	broad.mit.edu	37	15	35045189	35045189	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121708950	121708950	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP1R	2740	broad.mit.edu	37	6	39046137	39046137	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151266251	151266251	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL1	92292	broad.mit.edu	37	11	58723221	58723221	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNA13	10672	broad.mit.edu	37	17	63010499	63010499	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG4	2786	broad.mit.edu	37	1	235747043	235747043	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL2	29889	broad.mit.edu	37	1	38032463	38032463	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133381374	133381374	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8DP	100132979	broad.mit.edu	37	15	22709855	22709855	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121411543	121411543	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155823635	155823635	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167024949	167024949	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH2	55105	broad.mit.edu	37	1	217665055	217665055	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH2	55105	broad.mit.edu	37	1	217671776	217671776	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH3	63906	broad.mit.edu	37	1	27219137	27219137	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPCPD1	56261	broad.mit.edu	37	20	5554524	5554524	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157368611	157368611	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157426095	157426095	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176555945	176555945	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22415263	22415263	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131471658	131471658	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR162	27239	broad.mit.edu	37	12	6935530	6935530	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR32	2854	broad.mit.edu	37	19	51274680	51274680	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR37	2861	broad.mit.edu	37	7	124387020	124387020	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR56	9289	broad.mit.edu	37	16	57685350	57685350	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR85	54329	broad.mit.edu	37	7	112724234	112724234	+	Silent	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90052446	90052446	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123484121	123484121	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123484258	123484258	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAP2	9402	broad.mit.edu	37	22	40351868	40351868	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11777829	11777829	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153026471	153026471	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153029853	153029853	+	Intron	SNP	C	A	A	rs72469632		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153190693	153190693	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94690481	94690481	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37291266	37291266	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120745989	120745989	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIPAP1	56850	broad.mit.edu	37	X	48841880	48841880	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIPAP1	56850	broad.mit.edu	37	X	48846310	48846310	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7348398	7348398	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126249511	126249511	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSPT2	23708	broad.mit.edu	37	X	51488070	51488070	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA4	2941	broad.mit.edu	37	6	52858930	52858930	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27519926	27519926	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108634872	108634872	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2A	2980	broad.mit.edu	37	1	42628556	42628556	+	3'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14781651	14781651	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYG1	2992	broad.mit.edu	37	3	148712125	148712125	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAND1	9421	broad.mit.edu	37	5	153857478	153857478	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO2	51179	broad.mit.edu	37	1	119935144	119935144	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBS1L	10767	broad.mit.edu	37	6	135306526	135306526	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30671745	30671745	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262380	45262380	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262920	45262920	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	240098312	240098312	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18633383	18633383	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDDC2	51020	broad.mit.edu	37	6	125597332	125597332	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93258614	93258614	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93260936	93260936	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43484000	43484000	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197194480	197194480	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93779012	93779012	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93819304	93819304	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPN1	641654	broad.mit.edu	37	11	124789750	124789750	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFE2	148738	broad.mit.edu	37	1	145416330	145416330	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81388134	81388134	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100118680	100118680	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1D	3007	broad.mit.edu	37	6	26234840	26234840	+	Missense_Mutation	SNP	G	A	A	rs144176369		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AL	8332	broad.mit.edu	37	6	27833081	27833081	+	5'Flank	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143094352	143094352	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176316631	176316631	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLF	3131	broad.mit.edu	37	17	53398272	53398272	+	3'UTR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221055725	221055725	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185703787	185703787	+	5'UTR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185956692	185956692	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186031757	186031757	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186059944	186059944	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186075949	186075949	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186107156	186107156	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186113345	186113345	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186147665	186147665	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCLL1	54511	broad.mit.edu	37	6	55379010	55379010	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF1A	6927	broad.mit.edu	37	12	121434482	121434482	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43058091	43058091	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA3P1	10151	broad.mit.edu	37	10	44285410	44285410	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42828543	42828543	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27182841	27182841	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46629838	46629838	+	5'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD10	3236	broad.mit.edu	37	2	176983853	176983853	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPN	3249	broad.mit.edu	37	19	35557002	35557003	+	Intron	DNP	CA	AG	AG			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPX	3263	broad.mit.edu	37	11	6458639	6458639	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	25704416	25704416	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26043824	26043824	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114384030	114384030	+	5'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST3	266722	broad.mit.edu	37	13	97226336	97226336	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B12	51144	broad.mit.edu	37	11	43740492	43740492	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B2	3294	broad.mit.edu	37	16	82104622	82104622	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B3	3293	broad.mit.edu	37	9	99012156	99012156	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSF2	3298	broad.mit.edu	37	6	122743769	122743769	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31733093	31733093	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113856663	113856663	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3B	9177	broad.mit.edu	37	11	113815222	113815222	+	Intron	SNP	C	A	A	rs11606750		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183776234	183776234	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3D	200909	broad.mit.edu	37	3	183756227	183756227	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR4	3360	broad.mit.edu	37	5	147888967	147888967	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123509102	123509102	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70841512	70841512	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70891626	70891626	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDE	3416	broad.mit.edu	37	10	94229922	94229922	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	159023243	159023243	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99251358	99251358	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47109330	47109330	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47121290	47121290	+	Intron	SNP	A	G	G	rs146885453	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47123148	47123148	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130423225	130423225	+	5'UTR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160064892	160064892	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18R1	8809	broad.mit.edu	37	2	103003546	103003546	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RN	3557	broad.mit.edu	37	2	113875719	113875719	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL23R	149233	broad.mit.edu	37	1	67685422	67685422	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL27	246778	broad.mit.edu	37	16	28513378	28513378	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28RA	163702	broad.mit.edu	37	1	24484251	24484251	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3139691	3139691	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166896340	166896340	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41729504	41729504	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41350930	41350930	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156812316	156812316	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS10	55174	broad.mit.edu	37	8	19680970	19680970	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTU	27152	broad.mit.edu	37	4	128565197	128565197	+	Missense_Mutation	SNP	G	T	T	rs146720875		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156501136	156501136	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123143294	123143294	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK2	3656	broad.mit.edu	37	3	10283890	10283890	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF2BP2	359948	broad.mit.edu	37	1	234742946	234742946	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF9	10379	broad.mit.edu	37	14	24633877	24633877	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2748643	2748643	+	Silent	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX5	10265	broad.mit.edu	37	16	54966912	54966912	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISM1	140862	broad.mit.edu	37	20	13260474	13260475	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISM2	145501	broad.mit.edu	37	14	77944654	77944655	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG1	81533	broad.mit.edu	37	16	47189792	47189792	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG2	55846	broad.mit.edu	37	12	2930910	2930910	+	Silent	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182388194	182388194	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA4	3676	broad.mit.edu	37	2	182400116	182400116	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15614333	15614333	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52818544	52818544	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7611657	7611657	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156638470	156638470	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156641394	156641394	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN2	142683	broad.mit.edu	37	1	160920955	160920955	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPA	3704	broad.mit.edu	37	20	3194649	3194649	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26749952	26749952	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26755443	26755443	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	147016421	147016421	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64952903	64952903	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JOSD1	9929	broad.mit.edu	37	22	39085300	39085300	+	Splice_Site	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123871861	123871861	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK1	23189	broad.mit.edu	37	9	712598	712598	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62732375	62732375	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCMF1	56888	broad.mit.edu	37	2	85280407	85280408	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021276	5021276	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5153719	5153719	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156241547	156241547	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156254565	156254565	+	3'UTR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75601819	75601819	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	119915394	119915394	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211034583	211034583	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211280669	211280669	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63447533	63447533	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169931589	169931589	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ2	3759	broad.mit.edu	37	17	68171259	68171259	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ8	3764	broad.mit.edu	37	12	21926524	21926524	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK17	89822	broad.mit.edu	37	6	39272314	39272314	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK1	3775	broad.mit.edu	37	1	233802359	233802359	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK1	3775	broad.mit.edu	37	1	233802735	233802735	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215256828	215256828	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB1	3779	broad.mit.edu	37	5	169810693	169810693	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154744658	154744658	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138650232	138650232	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196434485	196434485	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196448291	196448291	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36779958	36779958	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36793164	36793164	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24180208	24180208	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD5	54442	broad.mit.edu	37	16	2732829	2732829	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD7	154881	broad.mit.edu	37	7	66104113	66104113	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137710732	137710732	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4DL	390245	broad.mit.edu	37	11	94759260	94759260	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	432318	432318	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53230827	53230827	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142659257	142659257	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0317	9870	broad.mit.edu	37	14	75134001	75134001	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43880661	43880661	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42161647	42161647	+	Splice_Site	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0913	23053	broad.mit.edu	37	10	75556676	75556676	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123159438	123159438	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24820937	24820937	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94100781	94100781	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94120394	94120394	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95502247	95502247	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1524	57650	broad.mit.edu	37	3	108272597	108272597	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20862828	20862828	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1826	84437	broad.mit.edu	37	11	105881530	105881530	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8887977	8887977	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16360305	16360305	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10402019	10402019	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901406	51901406	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901520	51901520	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26152068	26152068	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154396933	154396933	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39513523	39513523	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39688440	39688440	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL3	115653	broad.mit.edu	37	19	55246608	55246608	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349507	36349507	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF10	7071	broad.mit.edu	37	8	103663859	103663859	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF12	11278	broad.mit.edu	37	13	74339045	74339045	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC8B	200942	broad.mit.edu	37	3	49212336	49212336	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL25	64410	broad.mit.edu	37	15	86312943	86312943	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166160028	166160028	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51378145	51378145	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRG2	346689	broad.mit.edu	37	7	139164241	139164241	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT32	3882	broad.mit.edu	37	17	39622168	39622168	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT33A	3883	broad.mit.edu	37	17	39503366	39503366	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6C	286887	broad.mit.edu	37	12	52863166	52863166	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT77	374454	broad.mit.edu	37	12	53084909	53084909	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT84	3890	broad.mit.edu	37	12	52775314	52775314	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP15-1	254950	broad.mit.edu	37	21	31812499	31812499	+	5'Flank	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	117962723	117962723	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143642922	143642922	+	5'UTR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143797987	143797987	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153132055	153132055	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L2HGDH	79944	broad.mit.edu	37	14	50735776	50735776	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6961804	6961804	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7044726	7044726	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7050762	7050762	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112471781	112471782	+	Nonsense_Mutation	DNP	AG	TA	TA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107620994	107620994	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209811358	209811358	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183103994	183103994	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183177098	183177098	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133943333	133943333	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145523891	145523892	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS2	26524	broad.mit.edu	37	13	21555562	21555562	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2B	26239	broad.mit.edu	37	1	152659577	152659577	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2D	353141	broad.mit.edu	37	1	152636873	152636873	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169697673	169697673	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36248825	36248825	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEO1	123169	broad.mit.edu	37	15	52258551	52258551	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI3	203190	broad.mit.edu	37	8	22012902	22012902	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGMN	5641	broad.mit.edu	37	14	93179092	93179092	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71928963	71928963	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL1	340596	broad.mit.edu	37	X	111914406	111914406	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL5	222662	broad.mit.edu	37	6	35773618	35773618	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75614246	75614246	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48624486	48624486	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106221	55106221	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54804156	54804156	+	Silent	SNP	C	A	A	rs142044806		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55175259	55175259	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNB1	4001	broad.mit.edu	37	5	126140540	126140540	+	Silent	SNP	G	T	T	rs34224885	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76369502	76369502	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76414308	76414308	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC168474	168474	broad.mit.edu	37	7	64312721	64312721	+	3'UTR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285074	285074	broad.mit.edu	37	2	87276728	87276728	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC407835	407835	broad.mit.edu	37	7	128766815	128766815	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC643955	643955	broad.mit.edu	37	7	62758639	62758639	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653566	653566	broad.mit.edu	37	1	28422503	28422503	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22588000	22588000	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728855	728855	broad.mit.edu	37	1	149648759	149648759	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC729156	729156	broad.mit.edu	37	7	66304891	66304891	+	RNA	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC81691	81691	broad.mit.edu	37	16	20856477	20856477	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22682035	22682035	+	RNA	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23047050	23047050	+	RNA	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23241720	23241720	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23247147	23247147	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160977328	160977328	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161016506	161016506	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82302730	82302730	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82409389	82409389	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82436237	82436237	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11945128	11945128	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133859261	133859261	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT2	340745	broad.mit.edu	37	10	85984516	85984516	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRMP	4033	broad.mit.edu	37	12	25257441	25257441	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105578361	105578361	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141264544	141264544	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141272182	141272182	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141707758	141707758	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170063608	170063608	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRPPRC	10128	broad.mit.edu	37	2	44145421	44145421	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC2	79442	broad.mit.edu	37	3	46563190	46563191	+	Intron	DNP	CG	AT	AT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76372248	76372248	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4	64101	broad.mit.edu	37	7	127669173	127669173	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52863792	52863792	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115529250	115529250	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM14A	26065	broad.mit.edu	37	19	34700057	34700057	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSR	51599	broad.mit.edu	37	19	35749980	35749980	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75078653	75078653	+	5'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75078677	75078677	+	5'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25098994	25098994	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP4	51213	broad.mit.edu	37	X	114541017	114541017	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160797673	160797673	+	3'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYRM5	144363	broad.mit.edu	37	12	25357145	25357145	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235878489	235878489	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235887558	235887559	+	Intron	DNP	CA	AT	AT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235922285	235922285	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACC1	346389	broad.mit.edu	37	7	20198295	20198295	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39927704	39927704	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA11	4110	broad.mit.edu	37	X	148796183	148796183	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995949	140995949	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77814926	77814926	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65268079	65268079	+	RNA	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAL	4118	broad.mit.edu	37	2	95715427	95715427	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML2	84441	broad.mit.edu	37	11	95824963	95824963	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149638912	149638912	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAMLD1	10046	broad.mit.edu	37	X	149639109	149639109	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K4	4216	broad.mit.edu	37	6	161523039	161523039	+	Intron	SNP	G	C	C	rs144011617	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136977654	136977654	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK9	5601	broad.mit.edu	37	5	179663483	179663483	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42109327	42109327	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220808715	220808715	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARS	4141	broad.mit.edu	37	12	57882953	57882953	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD1	4152	broad.mit.edu	37	18	47806388	47806388	+	Splice_Site	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD5	55777	broad.mit.edu	37	2	149243567	149243567	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD6	114785	broad.mit.edu	37	12	57920459	57920459	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54824718	54824718	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP2	55784	broad.mit.edu	37	15	94857544	94857544	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151078261	151078261	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151107730	151107730	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70343155	70343155	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131943165	131943165	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED25	81857	broad.mit.edu	37	19	50333382	50333383	+	Frame_Shift_Ins	INS	-	C	C	rs147677997	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3304325	3304325	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42114035	42114035	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL2B	55798	broad.mit.edu	37	7	128138162	128138162	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116411790	116411790	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141721627	141721627	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141722255	141722255	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141736522	141736522	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141765355	141765355	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141780535	141780535	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141796232	141796232	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC16703	113691	broad.mit.edu	37	22	21363651	21363651	+	RNA	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1295	100302178	broad.mit.edu	37	1	171070907	171070907	+	RNA	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR509-2	100126301	broad.mit.edu	37	X	146342224	146342224	+	5'Flank	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR557	693142	broad.mit.edu	37	1	168344708	168344708	+	5'Flank	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151927301	151927301	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151935785	151935785	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT1	4298	broad.mit.edu	37	19	6213341	6213341	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118376837	118376837	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP10	4319	broad.mit.edu	37	11	102649400	102649400	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89209477	89209477	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108780771	108780771	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSPD3	64598	broad.mit.edu	37	7	100212502	100212502	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP5	64398	broad.mit.edu	37	14	67769328	67769328	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP5	64398	broad.mit.edu	37	14	67799763	67799763	+	3'UTR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPRIP	23164	broad.mit.edu	37	17	16981181	16981181	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPZ	4359	broad.mit.edu	37	1	161279650	161279650	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRE11A	4361	broad.mit.edu	37	11	94153343	94153343	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRE11A	4361	broad.mit.edu	37	11	94223994	94223994	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX4	117196	broad.mit.edu	37	11	18195302	18195303	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL39	54148	broad.mit.edu	37	21	26976262	26976262	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS22	56945	broad.mit.edu	37	3	139068980	139068980	+	Intron	SNP	G	T	T	rs149021264	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS5	64969	broad.mit.edu	37	2	95772096	95772096	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60566024	60566024	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60164087	60164087	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59945730	59945730	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	80074567	80074567	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49932445	49932445	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSX2P1	55545	broad.mit.edu	37	17	56235080	56235080	+	RNA	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTAP	4507	broad.mit.edu	37	9	21929595	21929595	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTM1	4534	broad.mit.edu	37	X	149765120	149765120	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237016014	237016014	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100530153	100530153	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS1	57509	broad.mit.edu	37	8	17573163	17573163	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9061000	9061000	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100679973	100679973	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MX2	4600	broad.mit.edu	37	21	42762541	42762541	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYADML	151325	broad.mit.edu	37	2	33952672	33952672	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBBP1A	10514	broad.mit.edu	37	17	4451565	4451565	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50944203	50944203	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102132	81102132	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYF6	4618	broad.mit.edu	37	12	81102623	81102623	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH14	79784	broad.mit.edu	37	19	50720811	50720811	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108135592	108135592	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10399212	10399212	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10543699	10543699	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23887135	23887135	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10303001	10303001	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10303778	10303778	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123457744	123457744	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16676284	16676284	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16680173	16680173	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26222472	26222472	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26239790	26239790	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52569414	52569415	+	Intron	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24433565	24433565	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1891293	1891293	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48581955	48581956	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N6AMT1	29104	broad.mit.edu	37	21	30248615	30248615	+	3'UTR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89896628	89896628	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	174777511	174777511	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78444651	78444651	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90976613	90976613	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311786	145311786	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145456767	145456767	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145646093	145646093	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22710638	22710638	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCK1	4690	broad.mit.edu	37	3	136618741	136618741	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133636531	133636531	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71075713	71075713	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71087017	71087017	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21124440	21124440	+	Splice_Site	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152553887	152553887	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20869131	20869131	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21594652	21594652	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156639829	156639829	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417343	70417343	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO2	81831	broad.mit.edu	37	16	47117783	47117783	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22140323	22140323	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29527461	29527461	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29527470	29527470	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29684520	29684520	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFR	4804	broad.mit.edu	37	17	47587730	47587730	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFR	4804	broad.mit.edu	37	17	47587758	47587758	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC1	150159	broad.mit.edu	37	4	103832641	103832641	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52494097	52494097	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL3	57185	broad.mit.edu	37	1	24795651	24795651	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	125139492	125139492	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768262	63768262	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN4	128414	broad.mit.edu	37	20	61881203	61881203	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56307668	56307668	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7060058	7060058	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7079645	7079645	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247599221	247599221	+	Intron	DEL	G	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56544055	56544055	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56561898	56561898	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55451425	55451425	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMS	129521	broad.mit.edu	37	2	101086939	101086939	+	5'Flank	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNMT	4837	broad.mit.edu	37	11	114167310	114167310	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31599554	31599554	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31709892	31709892	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOSTRIN	115677	broad.mit.edu	37	2	169690892	169690892	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32164912	32164912	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32169165	32169166	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89133285	89133285	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69334988	69334988	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	33836495	33836495	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66191384	66191384	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPM1	4869	broad.mit.edu	37	5	170815046	170815046	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTX2	4885	broad.mit.edu	37	7	98254144	98254144	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTXR	23467	broad.mit.edu	37	22	39219275	39219275	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100926438	100926438	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1I2	8856	broad.mit.edu	37	3	119536081	119536081	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E3	10002	broad.mit.edu	37	15	72105900	72105900	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR3C2	4306	broad.mit.edu	37	4	149357133	149357133	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115413942	115413942	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206580979	206580979	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50733693	50733693	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50765408	50765408	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50847160	50847160	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79181165	79181165	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5603743	5603743	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5604132	5604132	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	131781566	131781566	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132177643	132177643	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156841653	156841653	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156849987	156849987	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR1	4923	broad.mit.edu	37	20	61391345	61391345	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUAK1	9891	broad.mit.edu	37	12	106461547	106461547	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT2	318	broad.mit.edu	37	9	34343307	34343307	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71727612	71727612	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131760828	131760828	+	Silent	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3720235	3720235	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3793135	3793135	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL2	11097	broad.mit.edu	37	7	23240332	23240332	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101091693	101091693	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24878209	24878209	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS3	4940	broad.mit.edu	37	12	113403719	113403719	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28090145	28090145	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28096535	28096535	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167181951	167181951	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167517651	167517651	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167645245	167645245	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167645451	167645451	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167654902	167654902	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183245292	183245292	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183657893	183657893	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLR1	4973	broad.mit.edu	37	12	10313570	10313570	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47763181	47763181	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6891362	6891362	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6867266	6867266	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A6	390093	broad.mit.edu	37	11	7949838	7949838	+	Silent	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H2	26538	broad.mit.edu	37	19	15839797	15839797	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835758	247835758	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13H1	347468	broad.mit.edu	37	X	130678698	130678699	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512941	248512941	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L4	254973	broad.mit.edu	37	9	125487003	125487003	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695078	247695078	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248166397	248166397	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248202223	248202223	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285528	248285528	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T1	26696	broad.mit.edu	37	1	248569848	248569848	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616140	248616141	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4B1	119765	broad.mit.edu	37	11	48238838	48238838	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C12	283093	broad.mit.edu	37	11	50003262	50003262	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974685	49974685	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515313	51515313	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515316	51515316	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D10	390197	broad.mit.edu	37	11	59245562	59245562	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20403887	20403887	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404642	20404642	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413456	22413456	+	5'Flank	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22382907	22382907	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20611948	20611948	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612474	20612474	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B6	390058	broad.mit.edu	37	11	5373149	5373149	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G1	79324	broad.mit.edu	37	11	4944709	4944709	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G2	81282	broad.mit.edu	37	11	4936138	4936138	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51S1	119692	broad.mit.edu	37	11	4870505	4870505	+	5'Flank	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E4	390081	broad.mit.edu	37	11	5906066	5906066	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52L1	338751	broad.mit.edu	37	11	6007543	6007543	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N4	390072	broad.mit.edu	37	11	5776868	5776868	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A1	120796	broad.mit.edu	37	11	6048534	6048534	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969236	5969236	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B17	219965	broad.mit.edu	37	11	58126401	58126401	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D13	390142	broad.mit.edu	37	11	55541512	55541512	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55606958	55606958	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55587737	55587737	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944560	55944560	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M11	219487	broad.mit.edu	37	11	56310560	56310560	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M9	390162	broad.mit.edu	37	11	56230837	56230837	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T3	390154	broad.mit.edu	37	11	56020456	56020456	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6V1	346517	broad.mit.edu	37	7	142749819	142749819	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A17	26333	broad.mit.edu	37	19	14992166	14992166	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A2	135924	broad.mit.edu	37	7	142723539	142723539	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC1L	4998	broad.mit.edu	37	1	52863628	52863628	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76769208	76769208	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBP	5007	broad.mit.edu	37	11	59377981	59377981	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSCP1	127700	broad.mit.edu	37	1	36887719	36887719	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTF1	26578	broad.mit.edu	37	9	77732461	77732461	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31818568	31818568	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX1	5023	broad.mit.edu	37	17	3802969	3802969	+	Silent	SNP	C	G	G	rs12602000		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA3	283208	broad.mit.edu	37	11	74000233	74000233	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P704P	641455	broad.mit.edu	37	14	20019987	20019987	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17666105	17666105	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23637588	23637588	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN3	255967	broad.mit.edu	37	13	28789054	28789054	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPLN	89932	broad.mit.edu	37	14	73721202	73721202	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLA	10914	broad.mit.edu	37	14	97008599	97008599	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176668472	176668472	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118973876	118973876	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS2	9060	broad.mit.edu	37	10	89475487	89475487	+	Splice_Site	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162475106	162475106	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50124304	50124304	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242054438	242054438	+	Intron	SNP	C	A	A	rs140703087	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASK	23178	broad.mit.edu	37	2	242065756	242065756	+	Silent	SNP	C	A	A	rs56043607	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125617480	125617481	+	Intron	DNP	TG	AT	AT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31812340	31812340	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX7	5081	broad.mit.edu	37	1	19026998	19026998	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	100807337	100807337	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	4968734	4968734	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58209199	58209199	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140256781	140256781	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263035	140263035	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140203558	140203558	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC2	56134	broad.mit.edu	37	5	140347030	140347030	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC2	56134	broad.mit.edu	37	5	140347941	140347941	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140580003	140580003	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140580647	140580647	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140736531	140736531	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA9	56107	broad.mit.edu	37	5	140783487	140783487	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA9	56107	broad.mit.edu	37	5	140784705	140784705	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB6	56100	broad.mit.edu	37	5	140789537	140789537	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93008124	93008124	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56136707	56136707	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82544299	82544299	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK6	5046	broad.mit.edu	37	15	101983678	101983678	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178762853	178762853	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20806953	20806953	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144921776	144921776	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149283301	149283301	+	Intron	SNP	G	T	T	rs115655551	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE9A	5152	broad.mit.edu	37	21	44108130	44108130	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73432950	73432950	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG10	23089	broad.mit.edu	37	7	94293493	94293493	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57334137	57334137	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PER1	5187	broad.mit.edu	37	17	8054080	8054080	+	5'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFN4	375189	broad.mit.edu	37	2	24342459	24342459	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230459372	230459372	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGC	5225	broad.mit.edu	37	6	41712155	41712155	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGRMC2	10424	broad.mit.edu	37	4	129208520	129208520	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58342339	58342339	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11046337	11046337	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133849048	133849048	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21B	112885	broad.mit.edu	37	22	45312231	45312231	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHGDH	26227	broad.mit.edu	37	1	120266066	120266066	+	Splice_Site	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI3	5266	broad.mit.edu	37	20	43803524	43803524	+	5'Flank	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS1	8554	broad.mit.edu	37	15	68445894	68445894	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGX	54965	broad.mit.edu	37	3	196454905	196454905	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2A	5286	broad.mit.edu	37	11	17111270	17111270	+	3'UTR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138407855	138407855	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R3	8503	broad.mit.edu	37	1	46570800	46570800	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209191039	209191039	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47869105	47869105	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81224338	81224338	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKDREJ	10343	broad.mit.edu	37	22	46657468	46657468	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110509297	110509297	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51656119	51656119	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51774197	51774197	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51890489	51890489	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51920356	51920356	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN2	5586	broad.mit.edu	37	1	89279417	89279417	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	32975561	32975561	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G2C	391013	broad.mit.edu	37	1	20490554	20490554	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAG1	5324	broad.mit.edu	37	8	57079580	57079580	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAT	5327	broad.mit.edu	37	8	42038173	42038173	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28785789	28785789	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28828767	28828767	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB2	5330	broad.mit.edu	37	15	40594423	40594423	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9434108	9434108	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242451774	242451774	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144990835	144990835	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA4	57664	broad.mit.edu	37	19	49357342	49357342	+	Silent	SNP	C	A	A	rs16982323	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204234329	204234329	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131904420	131904420	+	3'UTR	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131953196	131953196	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG2	64857	broad.mit.edu	37	19	39915833	39915833	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG4	25894	broad.mit.edu	37	16	67320198	67320198	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68024190	68024190	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHO2	80301	broad.mit.edu	37	15	65158141	65158141	+	3'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68620169	68620169	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208206529	208206529	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131832667	131832667	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131848973	131848973	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131887521	131887521	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131888117	131888117	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131912379	131912379	+	Intron	DEL	C	-	-	rs142371428	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131925936	131925936	+	Intron	DEL	A	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP2	5408	broad.mit.edu	37	10	118404587	118404587	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNOC	5368	broad.mit.edu	37	8	28186658	28186658	+	5'UTR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPT1	87178	broad.mit.edu	37	2	55920933	55920933	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84559288	84559288	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24859838	24859838	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3F	10621	broad.mit.edu	37	20	18460626	18460626	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104038	53104038	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104052	53104052	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124475596	124475596	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU1F1	5449	broad.mit.edu	37	3	87322437	87322437	+	Intron	SNP	C	A	A	rs34134326	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F3	25833	broad.mit.edu	37	11	120170297	120170297	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAP2A	8611	broad.mit.edu	37	5	54786716	54786716	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203029443	203029443	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL3	53938	broad.mit.edu	37	2	201747087	201747087	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12B	4660	broad.mit.edu	37	1	202527939	202527939	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12C	54776	broad.mit.edu	37	19	55605665	55605665	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37536785	37536785	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54974131	54974131	+	3'UTR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R2P3	153743	broad.mit.edu	37	5	156278148	156278148	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113519888	113519888	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94539687	94539688	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	145969600	145969600	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3A	5523	broad.mit.edu	37	3	135742036	135742036	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3R2	5535	broad.mit.edu	37	9	104357274	104357274	+	5'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R1	9989	broad.mit.edu	37	18	9584684	9584684	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94716613	94716613	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPYR1	5540	broad.mit.edu	37	10	47087408	47087408	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAP1	118471	broad.mit.edu	37	10	135165551	135165551	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCP	5547	broad.mit.edu	37	11	82560085	82560085	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3342312	3342312	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47274816	47274816	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	69136719	69136720	+	Intron	DEL	AC	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE2	166336	broad.mit.edu	37	3	64084637	64084637	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCE	5581	broad.mit.edu	37	2	46069963	46069963	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD2	25865	broad.mit.edu	37	19	47192863	47192863	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48711809	48711809	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20473749	20473749	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	16034984	16034984	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROP1	5626	broad.mit.edu	37	5	177421033	177421033	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROX1	5629	broad.mit.edu	37	1	214171089	214171089	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150315816	150315816	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150325535	150325535	+	3'UTR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF4B	8899	broad.mit.edu	37	6	4057172	4057172	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23A	729627	broad.mit.edu	37	3	138724643	138724643	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36424881	36424881	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36483853	36483853	+	Intron	SNP	C	T	T	rs116727896	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS23	11098	broad.mit.edu	37	11	86544453	86544453	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD	5662	broad.mit.edu	37	10	104176415	104176416	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN1	5663	broad.mit.edu	37	14	73683964	73683964	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43674368	43674368	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43679695	43679695	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43411392	43411392	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43520150	43520150	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43596022	43596022	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43772304	43772304	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA5	5686	broad.mit.edu	37	1	109964362	109964362	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSPC1	55269	broad.mit.edu	37	13	20333521	20333521	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11584135	11584135	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11595692	11595692	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136936177	136936177	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87687592	87687592	+	Silent	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71002981	71002981	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44069226	44069226	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40747036	40747036	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41400052	41400052	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121650745	121650745	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121651281	121651281	+	Silent	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121651816	121651816	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121701312	121701312	+	3'UTR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52233300	52233301	+	Intron	INS	-	GGG	GGG	rs57356169		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGL	5836	broad.mit.edu	37	14	51383717	51383717	+	Missense_Mutation	SNP	C	A	A	rs116465563	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158911720	158911720	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158913723	158913723	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD2	84795	broad.mit.edu	37	10	100157240	100157240	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9356495	9356495	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRSL1	55278	broad.mit.edu	37	6	107102802	107102802	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB19	401409	broad.mit.edu	37	7	140110927	140110927	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117869756	117869756	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36597068	36597068	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36231866	36231866	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160251431	160251431	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARA	5914	broad.mit.edu	37	17	38506137	38506137	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25502764	25502764	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79356752	79356752	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33740241	33740241	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRP3	25780	broad.mit.edu	37	2	33749025	33749025	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM12B	389677	broad.mit.edu	37	8	94748694	94748694	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM14	10432	broad.mit.edu	37	11	66392039	66392039	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145610382	145610382	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127964806	127964806	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM7	10179	broad.mit.edu	37	11	114272416	114272416	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCBTB1	55213	broad.mit.edu	37	13	50129684	50129684	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36087573	36087573	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384813	79384813	+	Silent	SNP	G	T	T	rs146689461		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103123313	103123313	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103191701	103191701	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103338398	103338398	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103474033	103474033	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111701261	111701261	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198540116	198540116	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3248068	3248068	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109694148	109694148	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGN	9104	broad.mit.edu	37	X	46940531	46940531	+	Translation_Start_Site	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108499086	108499086	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73007869	73007869	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240966289	240966289	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49604438	49604438	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130934836	130934836	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS1	22999	broad.mit.edu	37	6	72947526	72947526	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104570882	104570882	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104928756	104928756	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK3	11035	broad.mit.edu	37	14	24808382	24808382	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87357172	87357172	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87373673	87373673	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE10	338879	broad.mit.edu	37	14	20978831	20978831	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF165	494470	broad.mit.edu	37	18	44030343	44030343	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF31	55072	broad.mit.edu	37	14	24621044	24621044	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNGTT	8732	broad.mit.edu	37	6	89322381	89322381	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77617682	77617682	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124747551	124747551	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11376102	11376102	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR1	4919	broad.mit.edu	37	1	64515528	64515528	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117735649	117735649	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10467245	10467245	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10469636	10469636	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55533650	55533650	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPA1	6117	broad.mit.edu	37	17	1756318	1756318	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41814074	41814074	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL15	6138	broad.mit.edu	37	3	23959858	23959858	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL7	6129	broad.mit.edu	37	8	74205838	74205838	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPRD1B	58490	broad.mit.edu	37	20	36688015	36688015	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS10P7	376693	broad.mit.edu	37	1	201489324	201489324	+	RNA	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAS	6237	broad.mit.edu	37	19	50139999	50140000	+	Intron	DNP	GG	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH1	89765	broad.mit.edu	37	21	43913208	43913208	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH9	221421	broad.mit.edu	37	6	43623073	43623073	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67834262	67834262	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY4	285180	broad.mit.edu	37	2	218938551	218938551	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	93088331	93088331	+	5'UTR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165380195	165380195	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237660032	237660032	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237972129	237972129	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34150030	34150030	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA4	6291	broad.mit.edu	37	11	18257353	18257353	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50407593	50407593	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130465976	130465976	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169654209	169654209	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92731594	92731594	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18457508	18457508	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50903240	50903240	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9871503	9871503	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36017670	36017670	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCCPDH	51097	broad.mit.edu	37	1	246921707	246921707	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCCPDH	51097	broad.mit.edu	37	1	246930470	246930470	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158980280	158980281	+	Intron	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCHIP1	29970	broad.mit.edu	37	3	158980358	158980358	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18278384	18278384	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38797377	38797377	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1B	6324	broad.mit.edu	37	19	35524372	35524372	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166210652	166210652	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	166018980	166018980	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62049987	62049987	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1B	6338	broad.mit.edu	37	16	23364420	23364420	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE2	57758	broad.mit.edu	37	11	9055142	9055142	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG8	10806	broad.mit.edu	37	1	243431053	243431053	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4119117	4119117	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4152974	4152974	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16B	89866	broad.mit.edu	37	1	177909803	177909803	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9119016	9119016	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9227081	9227081	+	Splice_Site	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT7	989	broad.mit.edu	37	7	35913392	35913392	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERHL2	253190	broad.mit.edu	37	22	42967043	42967043	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA10	51156	broad.mit.edu	37	14	94756290	94756290	+	Missense_Mutation	SNP	C	G	G	rs145668993		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB7	8710	broad.mit.edu	37	18	61459636	61459636	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57373895	57373895	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42530423	42530423	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD3	84193	broad.mit.edu	37	14	99871452	99871452	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFI1	9814	broad.mit.edu	37	22	31979854	31979854	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7218240	7218240	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS6	6431	broad.mit.edu	37	20	42089580	42089580	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPD	6441	broad.mit.edu	37	10	81697913	81697913	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155756486	155756486	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155885564	155885564	+	Intron	SNP	C	G	G	rs11952317	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS2	166929	broad.mit.edu	37	4	108824444	108824444	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105495414	105495414	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX2	6474	broad.mit.edu	37	3	157817615	157817615	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX2	6474	broad.mit.edu	37	3	157820705	157820705	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52003527	52003527	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51650072	51650072	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100838705	100838705	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72190515	72190515	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72201905	72201905	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38631937	38631937	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44671697	44671697	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122811842	122811842	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43248402	43248402	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22363248	22363248	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A10	65012	broad.mit.edu	37	12	58016511	58016511	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92261991	92261991	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118165140	118165140	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B4	84912	broad.mit.edu	37	7	133979774	133979774	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46601048	46601048	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18270103	18270103	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190426728	190426728	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A1	254428	broad.mit.edu	37	1	205779243	205779243	+	Silent	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75677070	75677070	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33964047	33964047	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42328846	42328846	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A7	9497	broad.mit.edu	37	3	27462238	27462238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51852413	51852413	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51856282	51856282	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108609531	108609531	+	Silent	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20648268	20648268	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A6	6533	broad.mit.edu	37	3	14489271	14489271	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170198380	170198380	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103281498	103281498	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70585148	70585148	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98924687	98924687	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20493253	20493253	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20599873	20599873	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168119601	168119601	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17907648	17907648	+	Intron	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17923016	17923016	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156221313	156221313	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84311032	84311032	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127729525	127729525	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD113-5	767565	broad.mit.edu	37	14	101402915	101402915	+	5'Flank	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96964864	96964864	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25230254	25230254	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51617208	51617208	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51675248	51675248	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1093880	1093880	+	Splice_Site	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX27	81609	broad.mit.edu	37	1	151630912	151630912	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106581864	106581864	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106916950	106916950	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231065590	231065590	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118629694	118629694	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123593777	123593777	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142795129	142795129	+	3'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52945842	52945842	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA19	219938	broad.mit.edu	37	11	133712477	133712477	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA21	374955	broad.mit.edu	37	1	16736612	16736612	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123844193	123844193	+	5'Flank	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYC	387778	broad.mit.edu	37	11	64940196	64940196	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147510741	147510741	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136448123	136448123	+	Splice_Site	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167713293	167713293	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55655699	55655699	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SQRDL	58472	broad.mit.edu	37	15	45974832	45974832	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9079756	9079757	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK2	6733	broad.mit.edu	37	7	104785765	104785765	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK2	6733	broad.mit.edu	37	7	104844089	104844089	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM4	84530	broad.mit.edu	37	12	119559865	119559865	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52677069	52677069	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC5	81849	broad.mit.edu	37	1	77333342	77333342	+	5'UTR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC	6769	broad.mit.edu	37	3	36422208	36422208	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123217307	123217307	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17730268	17730268	+	Intron	DEL	A	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD4	134429	broad.mit.edu	37	5	110842098	110842098	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40485818	40485818	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP3	55240	broad.mit.edu	37	2	120002977	120002977	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK4	6789	broad.mit.edu	37	20	43703547	43703547	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOML3	161003	broad.mit.edu	37	13	39564834	39564834	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81743375	81743375	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRAP	11171	broad.mit.edu	37	12	16043573	16043573	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX19	415117	broad.mit.edu	37	3	93733408	93733408	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX3	6809	broad.mit.edu	37	11	59559643	59559643	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147684840	147684840	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C4	27233	broad.mit.edu	37	2	108998393	108998393	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48026964	48026964	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD5	26032	broad.mit.edu	37	3	33216372	33216372	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75594529	75594529	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152643000	152643000	+	Silent	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158514936	158514936	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119951624	119951624	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33579224	33579224	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT13	57586	broad.mit.edu	37	11	45265817	45265817	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT14	255928	broad.mit.edu	37	1	210334400	210334400	+	3'UTR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT4	6860	broad.mit.edu	37	18	40850357	40850357	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT6	148281	broad.mit.edu	37	1	114682494	114682494	+	5'UTR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT7	9066	broad.mit.edu	37	11	61318856	61318856	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL2	54843	broad.mit.edu	37	11	85435562	85435562	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97363000	97363000	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	124013452	124013452	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF15	8148	broad.mit.edu	37	17	34147178	34147178	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120774807	120774807	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234594899	234594899	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234603242	234603242	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33455692	33455692	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R14	50840	broad.mit.edu	37	12	11091043	11091043	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635480	122635480	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106108791	106108791	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9	23158	broad.mit.edu	37	4	141545554	141545554	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCK	93627	broad.mit.edu	37	4	107216182	107216182	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1Y	90665	broad.mit.edu	37	Y	6948720	6948720	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35271073	35271073	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTN2	79867	broad.mit.edu	37	12	124181093	124181093	+	Intron	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDGF3	6998	broad.mit.edu	37	X	109764360	109764360	+	RNA	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD10	126668	broad.mit.edu	37	1	154514497	154514497	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179620108	179620108	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20842712	20842712	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1293449	1293449	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70451365	70451365	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30695554	30695554	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10411888	10411888	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50803948	50803948	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50807768	50807769	+	Intron	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFB2M	64216	broad.mit.edu	37	1	246729385	246729385	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141692810	141692810	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93518300	93518300	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB2	7042	broad.mit.edu	37	1	218614643	218614643	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR1	7046	broad.mit.edu	37	9	101910089	101910089	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177555	89177555	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2321040	2321040	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43577168	43577168	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133913517	133913517	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133980047	133980047	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBD	7056	broad.mit.edu	37	20	23028784	23028784	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS3	7059	broad.mit.edu	37	1	155174750	155174750	+	Splice_Site	DEL	T	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEMIS	387357	broad.mit.edu	37	6	128134051	128134051	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155450580	155450580	+	Missense_Mutation	SNP	G	C	C	rs138740409	byFrequency	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155451585	155451585	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43788445	43788445	+	3'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54208149	54208149	+	Splice_Site	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIPARP	25976	broad.mit.edu	37	3	156395640	156395640	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30054591	30054591	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70350727	70350727	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK1	9874	broad.mit.edu	37	2	171939285	171939285	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35724966	35724966	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120466790	120466790	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81627322	81627322	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81628884	81628884	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20009512	20009512	+	3'UTR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO6	55374	broad.mit.edu	37	5	140021877	140021877	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO7	79613	broad.mit.edu	37	16	69074207	69074207	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED7-TICAM2	100302736	broad.mit.edu	37	5	114916758	114916758	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM108	66000	broad.mit.edu	37	3	133099998	133099998	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126138332	126138332	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM136	219902	broad.mit.edu	37	11	120201273	120201273	+	3'UTR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM181	57583	broad.mit.edu	37	6	159028350	159028350	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15470631	15470631	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM25	84866	broad.mit.edu	37	11	118404185	118404185	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM49	81671	broad.mit.edu	37	17	57915655	57915655	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM56	148534	broad.mit.edu	37	1	95639516	95639516	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19653625	19653625	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19770595	19770595	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111782559	111782559	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29904535	29904535	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117800547	117800547	+	Silent	SNP	G	T	T	rs146574339		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11A	8792	broad.mit.edu	37	18	60036291	60036291	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170784088	170784088	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175328925	175328925	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175331925	175331925	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53RK	112858	broad.mit.edu	37	20	45315962	45315962	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577507	7577507	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578616	7578616	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10952867	10952867	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML3	340206	broad.mit.edu	37	6	41185594	41185594	+	RNA	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42225853	42225853	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM15	89870	broad.mit.edu	37	6	30136068	30136068	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	119983097	119983097	+	3'UTR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM2	23321	broad.mit.edu	37	4	154229449	154229449	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM31	11074	broad.mit.edu	37	6	30072021	30072021	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM50	135892	broad.mit.edu	37	7	72729115	72729115	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM69	140691	broad.mit.edu	37	15	45052153	45052153	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189026363	189026363	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38111855	38111855	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38165001	38165001	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14420035	14420035	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72984106	72984106	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC1	7220	broad.mit.edu	37	3	142503642	142503642	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC7	57113	broad.mit.edu	37	5	135602028	135602028	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31334149	31334149	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142625473	142625473	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142627051	142627051	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142574403	142574403	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142574948	142574948	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98519319	98519319	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98592095	98592095	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA14	95681	broad.mit.edu	37	7	130044495	130044495	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSIX	9383	broad.mit.edu	37	X	73043445	73043445	+	RNA	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPY2	64591	broad.mit.edu	37	Y	6115596	6115596	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL5	85453	broad.mit.edu	37	8	98289596	98289596	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL6	388951	broad.mit.edu	37	2	54482526	54482526	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43227441	43227441	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75113264	75113264	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166747407	166747407	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47233735	47233735	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84414310	84414310	+	Splice_Site	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179414361	179414361	+	Silent	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179485619	179485620	+	Missense_Mutation	DNP	AT	TG	TG			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179530122	179530122	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179585261	179585261	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179588906	179588906	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179611114	179611114	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179611919	179611919	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179634771	179634771	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179635562	179635562	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179644665	179644665	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19751382	19751383	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132237909	132237909	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUB	7275	broad.mit.edu	37	11	8122297	8122297	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15601139	15601139	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXK	7294	broad.mit.edu	37	4	48091864	48091864	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88911450	88911450	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW3	127253	broad.mit.edu	37	1	75229546	75229546	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF2	11338	broad.mit.edu	37	19	56174061	56174061	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43826565	43826565	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D1	7321	broad.mit.edu	37	10	60128535	60128535	+	3'UTR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156974174	156974174	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10209374	10209374	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42620053	42620053	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN2B	137886	broad.mit.edu	37	8	59337991	59337991	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN4	23190	broad.mit.edu	37	2	136540469	136540469	+	3'UTR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128865647	128865647	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35965803	35965803	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35988667	35988667	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20362075	20362075	+	5'UTR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35403482	35403482	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176289881	176289881	+	Intron	SNP	G	T	T	rs149629964	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35583603	35583603	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167728668	167728668	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROS	7390	broad.mit.edu	37	10	127504742	127504742	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215812588	215812588	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215847652	215847652	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216019177	216019177	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216262182	216262182	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216270503	216270503	+	Silent	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216462592	216462592	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216495249	216495249	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17370517	17370517	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP13	8975	broad.mit.edu	37	3	179459935	179459935	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP19	10869	broad.mit.edu	37	3	49153913	49153913	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP20	10868	broad.mit.edu	37	9	132637849	132637849	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58313588	58313588	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP45	85015	broad.mit.edu	37	6	99955267	99955267	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11942041	11942041	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41055569	41055569	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP23	84294	broad.mit.edu	37	8	117784191	117784191	+	3'UTR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144780218	144780218	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106739619	106739619	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	116660587	116660587	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	36812820	36812820	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	39011080	39011080	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	47594873	47594873	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	57427563	57427563	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	66814477	66814477	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107048322	107048322	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	107609329	107609329	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124121029	124121029	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124121188	124121188	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124209304	124209304	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124351775	124351775	+	IGR	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	33808678	33808678	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48442323	48442323	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48970847	48970847	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49860073	49860073	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49920251	49920251	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50227802	50227802	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50228499	50228499	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55783247	55783247	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58009449	58009449	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58155816	58155816	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	64942526	64942526	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71888929	71888929	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79698458	79698458	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89486765	89486765	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89498271	89498271	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016058	90016058	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	92648215	92648216	+	IGR	DNP	CC	AA	AA	rs149573665	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10264631	10264631	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	126994935	126994935	+	IGR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16553908	16553908	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43964898	43964898	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63398360	63398360	+	IGR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111589509	111589509	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19466427	19466427	+	IGR	SNP	G	T	T	rs150381916	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	28681999	28681999	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59103158	59103158	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59584635	59584635	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65532431	65532431	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68476426	68476426	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73278279	73278279	+	IGR	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19766868	19766868	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084510	20084510	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21191172	21191172	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	24219666	24219666	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25736537	25736537	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44010352	44010352	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45971950	45971950	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	55696307	55696307	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82383218	82383218	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82383805	82383805	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20833218	20833218	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21008967	21008967	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21369263	21369263	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22448323	22448323	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92829274	92829274	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	26851972	26851972	+	IGR	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31963687	31963687	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32490273	32490273	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33654350	33654350	+	IGR	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	55767303	55767303	+	IGR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60391279	60391279	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61089679	61089679	+	IGR	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62814206	62814206	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	75226413	75226413	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82468795	82468795	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20613759	20613759	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60216156	60216156	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14706309	14706309	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57637777	57637777	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	7300952	7300952	+	IGR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75149148	75149148	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22551517	22551517	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23040621	23040621	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35034871	35034871	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35873320	35873320	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55032862	55032862	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55208883	55208883	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9362771	9362771	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104470357	104470357	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106436120	106436120	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903213	148903213	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903384	148903384	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903392	148903392	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149060301	149060301	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152372308	152372308	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153197699	153197699	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158146126	158146126	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166716741	166716741	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17012554	17012554	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172718287	172718287	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	28447461	28447461	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73571383	73571383	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215949	79215949	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89797771	89797771	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873679	29873679	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10900009	10900009	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14756965	14756965	+	IGR	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14916619	14916619	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15383921	15383921	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20230624	20230624	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20230681	20230681	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31538212	31538212	+	IGR	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32127424	32127424	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	34214268	34214268	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123393	16123393	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	32666724	32666724	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104110883	104110883	+	IGR	DEL	G	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106998624	106998624	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	113753259	113753259	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131414233	131414233	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139170639	139170639	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146952062	146952062	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17566532	17566532	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	219065182	219065182	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52303386	52303386	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	52798031	52798031	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97695033	97695033	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116365641	116365641	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137600853	137600853	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	138800514	138800514	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	147884653	147884653	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180040959	180040959	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192874092	192874092	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31495828	31495828	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	37017753	37017753	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75385434	75385434	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87372993	87372993	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88367401	88367401	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98376579	98376579	+	IGR	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135865540	135865540	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	160415761	160415761	+	IGR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22595937	22595937	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43588700	43588700	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	57459867	57459867	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70255768	70255768	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9213760	9213761	+	IGR	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9237005	9237005	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110528227	110528227	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115387856	115387856	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115387898	115387898	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116051883	116051883	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	136193528	136193528	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173940324	173940324	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180551425	180551425	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	30365651	30365651	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56817501	56817501	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56817787	56817787	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	58406	58406	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	62597726	62597726	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	67151852	67151852	+	IGR	SNP	C	G	G	rs76962842	byFrequency;by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75207354	75207354	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113543539	113543539	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	142384282	142384282	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150364175	150364175	+	IGR	DEL	G	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	160882361	160882361	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27492000	27492000	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39967348	39967348	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48116614	48116614	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48181891	48181891	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49045504	49045504	+	IGR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52737866	52737866	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5788599	5788599	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547298	66547298	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80774437	80774437	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108524021	108524021	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119210397	119210397	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131438752	131438752	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144132318	144132318	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145281790	145281790	+	IGR	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38369928	38369928	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	42836228	42836228	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930541	53930541	+	IGR	SNP	A	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54724112	54724112	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55800039	55800039	+	IGR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56635692	56635692	+	IGR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665154	56665154	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665492	56665492	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217386	57217386	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	82286377	82286377	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9655542	9655542	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5334501	5334501	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62114909	62114909	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7216031	7216031	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81213387	81213387	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86556289	86556289	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92930141	92930141	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43614947	43614947	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43615113	43615113	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357441	68357441	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68452884	68452884	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88379775	88379776	+	IGR	DNP	GC	TT	TT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90631512	90631512	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	92978343	92978343	+	IGR	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106595538	106595538	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106808208	106808208	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120336997	120336997	+	IGR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743975	136743975	+	IGR	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141262949	141262949	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149400983	149400983	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150394747	150394747	+	IGR	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39646881	39646881	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57704610	57704610	+	IGR	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72989992	72989992	+	IGR	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74803164	74803164	+	IGR	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78580255	78580255	+	IGR	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	83004728	83004728	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14099931	14099932	+	IGR	DNP	CG	GT	GT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14619160	14619160	+	IGR	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP8	8673	broad.mit.edu	37	2	85808946	85808946	+	3'UTR	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160389144	160389144	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77859097	77859097	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6832254	6832254	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136653575	136653575	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101203756	101203756	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCP	7415	broad.mit.edu	37	9	35068147	35068147	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VENTX	27287	broad.mit.edu	37	10	135053168	135053168	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77902060	77902060	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VMA21	203547	broad.mit.edu	37	X	150573464	150573464	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79954579	79954579	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100245424	100245424	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62208222	62208222	+	Splice_Site	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12381896	12381896	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS18	57617	broad.mit.edu	37	15	41188135	41188135	+	Splice_Site	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK2	7444	broad.mit.edu	37	2	58276167	58276167	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK2	7444	broad.mit.edu	37	2	58315576	58315576	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2	375567	broad.mit.edu	37	7	49842462	49842462	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WARS	7453	broad.mit.edu	37	14	100820854	100820854	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF1	8936	broad.mit.edu	37	6	110422895	110422895	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASL	8976	broad.mit.edu	37	7	123334768	123334768	+	Splice_Site	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP5	51186	broad.mit.edu	37	X	102612793	102612793	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70853323	70853323	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71175705	71175706	+	Intron	DNP	CC	AT	AT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85599294	85599294	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85626690	85626690	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR45L	56270	broad.mit.edu	37	17	80588887	80588887	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241946704	241946704	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53905934	53905934	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54591321	54591321	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54591323	54591323	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54603141	54603141	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE1	7465	broad.mit.edu	37	11	9610100	9610100	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIF1	11197	broad.mit.edu	37	12	65462665	65462665	+	Silent	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIPF1	7456	broad.mit.edu	37	2	175440100	175440100	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT1	7471	broad.mit.edu	37	12	49373153	49373153	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228210455	228210456	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108634061	108634061	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32414252	32414252	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167882313	167882313	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAGE3	170626	broad.mit.edu	37	X	52895450	52895450	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31602819	31602819	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168102688	168102688	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106256	168106256	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168107271	168107271	+	Silent	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168108080	168108080	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XK	7504	broad.mit.edu	37	X	37587592	37587592	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP2	7512	broad.mit.edu	37	X	128876048	128876048	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28180977	28180977	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17211910	17211910	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17292255	17292255	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDF1	54915	broad.mit.edu	37	20	61833966	61833966	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YY1AP1	55249	broad.mit.edu	37	1	155629622	155629622	+	Silent	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAP70	7535	broad.mit.edu	37	2	98355742	98355742	+	Intron	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	167051656	167051656	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89061133	89061133	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H6	376940	broad.mit.edu	37	2	113088700	113088700	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC4H2	55906	broad.mit.edu	37	X	64140031	64140031	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC5	203430	broad.mit.edu	37	X	77913901	77913901	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31784670	31784670	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND1	79752	broad.mit.edu	37	8	82626241	82626241	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72056598	72056598	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617836	77617836	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77763844	77763844	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF142	7701	broad.mit.edu	37	2	219508191	219508191	+	Silent	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF217	7764	broad.mit.edu	37	20	52193540	52193541	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271976	22271976	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF259	8882	broad.mit.edu	37	11	116655728	116655728	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF277	11179	broad.mit.edu	37	7	111977724	111977724	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF317	57693	broad.mit.edu	37	19	9271813	9271813	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF326	284695	broad.mit.edu	37	1	90482956	90482956	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF329	79673	broad.mit.edu	37	19	58639405	58639405	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF333	84449	broad.mit.edu	37	19	14830005	14830005	+	Silent	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF366	167465	broad.mit.edu	37	5	71756328	71756328	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21466982	21466982	+	Splice_Site	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21552321	21552321	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109692895	109692895	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109771835	109771835	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936135	30936135	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039359	31039359	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039943	31039943	+	Silent	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF559	84527	broad.mit.edu	37	19	9453698	9453698	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF563	147837	broad.mit.edu	37	19	12433302	12433302	+	Intron	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF572	137209	broad.mit.edu	37	8	125988733	125988733	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	53014541	53014541	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF583	147949	broad.mit.edu	37	19	56925276	56925276	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585A	199704	broad.mit.edu	37	19	37643141	37643141	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF677	342926	broad.mit.edu	37	19	53741220	53741220	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84526752	84526752	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134425340	134425340	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF828	283489	broad.mit.edu	37	13	115089259	115089259	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149559100	149559100	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23545105	23545105	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941730	22941730	+	Silent	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNFX1	57169	broad.mit.edu	37	20	47865476	47865476	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF3	84133	broad.mit.edu	37	22	29439407	29439407	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238045748	238045748	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	50070670	50070670	+	Intron	SNP	C	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPLD1	131368	broad.mit.edu	37	3	102175129	102175129	+	Silent	SNP	A	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM2	151112	broad.mit.edu	37	2	187703649	187703649	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31270200	31270200	+	Intron	SNP	G	C	C	rs76487283		TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80771063	80771063	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22192023	22192023	+	RNA	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	30446238	30446238	+	5'Flank	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21561696	21561696	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5416058	5416058	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	90162441	90162442	+	3'UTR	DNP	GG	TA	TA			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	78268427	78268427	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	78268845	78268845	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22780249	22780249	+	Intron	SNP	A	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23159186	23159186	+	RNA	DEL	C	-	-			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43124406	43124406	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186697850	186697850	+	RNA	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89999596	89999596	+	Intron	SNP	G	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90008045	90008045	+	RNA	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90212112	90212112	+	RNA	SNP	C	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95613703	95613703	+	5'Flank	SNP	C	A	A	rs79572036	by1000genomes	TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96581863	96581863	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180491521	180491521	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	659755	659755	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9900813	9900813	+	Intron	SNP	T	G	G			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9933281	9933281	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124127	142124127	+	Intron	SNP	T	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142131768	142131768	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142149388	142149388	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142468390	142468390	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142469464	142469464	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142494294	142494294	+	Intron	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370175	63370175	+	Intron	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370588	63370588	+	Intron	SNP	C	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	30209670	30209670	+	Silent	SNP	G	C	C			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90747224	90747224	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17119658	17119658	+	Intron	SNP	T	A	A			TCGA-17-Z055-01A-01W-0747-08	TCGA-17-Z055-11A-01W-0747-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
