Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AADACL3	126767	broad.mit.edu	37	1	12786060	12786060	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48547487	48547487	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67269929	67269929	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67099179	67099179	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67099181	67099181	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169780177	169780177	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169850174	169850174	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20687598	20687598	+	5'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101596120	101596120	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD1	215	broad.mit.edu	37	X	153008744	153008744	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44064972	44064972	+	Splice_Site	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44101693	44101693	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD5	51099	broad.mit.edu	37	3	43743798	43743798	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3	51225	broad.mit.edu	37	17	47299525	47299525	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179089220	179089220	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM2	84448	broad.mit.edu	37	4	8029633	8029633	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148577968	148577968	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150556093	150556093	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109639376	109639376	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132294812	132294812	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCS	84680	broad.mit.edu	37	11	44105108	44105108	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131296196	131296196	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20497895	20497895	+	Splice_Site	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS1	84532	broad.mit.edu	37	20	25003719	25003719	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156899239	156899239	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156921692	156921692	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39027465	39027465	+	Silent	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM33	80332	broad.mit.edu	37	20	3655363	3655363	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106877900	106877900	+	RNA	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5306772	5306772	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43886354	43886354	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25095595	25095596	+	Intron	INS	-	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24793471	24793471	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24795478	24795478	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131949232	131949232	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1	116	broad.mit.edu	37	18	905426	905426	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100197673	100197673	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100130052	100130052	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA2A	150	broad.mit.edu	37	10	112838132	112838132	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116070142	116070142	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147891457	147891457	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148035035	148035035	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	148044222	148044222	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100368631	100368631	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12363881	12363881	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236706531	236706531	+	Splice_Site	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGA	175	broad.mit.edu	37	4	178355746	178355746	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50311714	50311714	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIFM1	9131	broad.mit.edu	37	X	129270036	129270036	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A3	220	broad.mit.edu	37	15	101425464	101425464	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG3	10195	broad.mit.edu	37	3	183967125	183967125	+	5'Flank	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45869880	45869880	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202483860	202483860	+	5'UTR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR8	79800	broad.mit.edu	37	2	203789674	203789674	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115238066	115238066	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC5	51433	broad.mit.edu	37	12	121746298	121746298	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC7	51434	broad.mit.edu	37	12	110824121	110824121	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL5	253935	broad.mit.edu	37	11	101777879	101777879	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114171085	114171085	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139864795	139864795	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD11	29123	broad.mit.edu	37	16	89351666	89351666	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92677489	92677489	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD27	84079	broad.mit.edu	37	19	33117667	33117667	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD55	79722	broad.mit.edu	37	5	55471986	55471986	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32D	23519	broad.mit.edu	37	12	48866732	48866732	+	Silent	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36713442	36713442	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2M1	1173	broad.mit.edu	37	3	183894823	183894823	+	Silent	SNP	G	C	C	rs2231214	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26825315	26825315	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21224591	21224591	+	3'UTR	SNP	C	G	G	rs72654428	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21251398	21251398	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21256487	21256487	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115338980	115338980	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF38	54848	broad.mit.edu	37	4	106534698	106534698	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135772674	135772674	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF9	23229	broad.mit.edu	37	X	62875751	62875751	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3B	10620	broad.mit.edu	37	15	74836611	74836611	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	T	T	rs5902610		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP2	8853	broad.mit.edu	37	2	9463317	9463317	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101166053	101166053	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155449759	155449759	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1748942	1748942	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197094378	197094378	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176903200	176903200	+	Intron	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176934374	176934374	+	Splice_Site	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG5	9474	broad.mit.edu	37	6	106682090	106682090	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47571099	47571099	+	Silent	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47574793	47574793	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A1	476	broad.mit.edu	37	1	116941357	116941357	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152813495	152813495	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1H	51606	broad.mit.edu	37	8	54714476	54714476	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26273380	26273380	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76920185	76920185	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76939995	76939995	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	69583203	69583203	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AWAT1	158833	broad.mit.edu	37	X	69458232	69458232	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI1	22994	broad.mit.edu	37	17	79173736	79173736	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT1	8708	broad.mit.edu	37	2	168726546	168726546	+	3'UTR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049568	11049568	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32193111	32193111	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP2L1	55971	broad.mit.edu	37	7	97933593	97933593	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP2L1	55971	broad.mit.edu	37	7	97949370	97949370	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAK1	578	broad.mit.edu	37	6	33543420	33543420	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANP	54971	broad.mit.edu	37	16	88017823	88017823	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171504659	171504659	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156622711	156622711	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99724153	99724153	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129189788	129189788	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BGN	633	broad.mit.edu	37	X	152770674	152770674	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHLHB9	80823	broad.mit.edu	37	X	102003868	102003868	+	5'UTR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11420536	11420536	+	Missense_Mutation	SNP	G	T	T	rs149924770		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1A	657	broad.mit.edu	37	10	88683407	88683407	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140481411	140481411	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD1	54014	broad.mit.edu	37	21	40610526	40610526	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79971552	79971552	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108008883	108008883	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BVES	11149	broad.mit.edu	37	6	105564768	105564768	+	Intron	SNP	G	A	A	rs145419931	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98743249	98743249	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf54	28970	broad.mit.edu	37	11	93486822	93486822	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97137342	97137342	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45711277	45711277	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74196470	74196470	+	Silent	SNP	C	A	A	rs149124754		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24923236	24923236	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf32	145858	broad.mit.edu	37	15	93043544	93043544	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30498541	30498541	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf34	255193	broad.mit.edu	37	19	1953943	1953943	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57252888	57252888	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf175	374977	broad.mit.edu	37	1	55158164	55158164	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf27	54953	broad.mit.edu	37	1	186359733	186359733	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf38	9473	broad.mit.edu	37	1	28208975	28208975	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf59	113802	broad.mit.edu	37	1	109191532	109191532	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf97	84791	broad.mit.edu	37	1	211590392	211590392	+	Intron	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf9	51430	broad.mit.edu	37	1	172571257	172571257	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf117	140710	broad.mit.edu	37	20	35467806	35467806	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf117	140710	broad.mit.edu	37	20	35467808	35467808	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45941973	45941973	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf25	128989	broad.mit.edu	37	22	20052235	20052235	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf42	150297	broad.mit.edu	37	22	32550130	32550130	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf9	23313	broad.mit.edu	37	22	45601987	45601987	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2	717	broad.mit.edu	37	6	31913078	31913078	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf56	55471	broad.mit.edu	37	2	37469751	37469754	+	Intron	DEL	ATTA	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf49	132200	broad.mit.edu	37	3	63825275	63825275	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf33	132321	broad.mit.edu	37	4	130030700	130030700	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41195923	41195923	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165706873	165706874	+	Intron	DNP	AT	TA	TA			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74073453	74073453	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf222	389384	broad.mit.edu	37	6	36293104	36293104	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf222	389384	broad.mit.edu	37	6	36297678	36297693	+	Intron	DEL	GAAGGAAGGAAGGAAA	-	-	rs6913729		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40959516	40959516	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf41	80185	broad.mit.edu	37	8	33370971	33370971	+	5'Flank	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39311461	39311461	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf3	84909	broad.mit.edu	37	9	97522631	97522631	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf46	55848	broad.mit.edu	37	9	5431905	5431905	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49713294	49713294	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1259320	1259320	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40043907	40043907	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201013705	201013705	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201052196	201052196	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D2	9254	broad.mit.edu	37	3	50418419	50418419	+	Intron	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1995390	1995390	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65026491	65026492	+	Intron	DNP	CC	TT	TT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG7	59284	broad.mit.edu	37	19	54445018	54445018	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159166865	159166865	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB2	794	broad.mit.edu	37	16	71419410	71419410	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14991586	14991586	+	Missense_Mutation	SNP	G	C	C	rs147263808	byFrequency	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO2	10241	broad.mit.edu	37	17	46925870	46925870	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2N1	55450	broad.mit.edu	37	1	20810198	20810198	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110490045	110490045	+	Intron	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35904633	35904633	+	3'UTR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2949713	2949713	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55027266	55027266	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBS	875	broad.mit.edu	37	21	44483093	44483093	+	Silent	SNP	G	A	A	rs149809170		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC106	29903	broad.mit.edu	37	19	56163777	56163777	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219874056	219874056	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC120	90060	broad.mit.edu	37	X	48920019	48920019	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC120	90060	broad.mit.edu	37	X	48920024	48920025	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92861895	92861895	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180381658	180381658	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC47	57003	broad.mit.edu	37	17	61833629	61833629	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119942925	119942925	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119960659	119960659	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32657241	32657241	+	Splice_Site	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND2	894	broad.mit.edu	37	12	4397890	4397890	+	Intron	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND2	894	broad.mit.edu	37	12	4397892	4397892	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNT1	904	broad.mit.edu	37	12	49110287	49110287	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67531511	67531511	+	3'UTR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD34	947	broad.mit.edu	37	1	208062250	208062250	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121822291	121822291	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54468503	54468503	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK18	5129	broad.mit.edu	37	1	205497110	205497110	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP1	51654	broad.mit.edu	37	20	31967468	31967468	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123206135	123206135	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDV3	55573	broad.mit.edu	37	3	133293931	133293931	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX2	1045	broad.mit.edu	37	13	28538932	28538932	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP110	11064	broad.mit.edu	37	9	123920368	123920368	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49054527	49054527	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES2	8824	broad.mit.edu	37	16	66969710	66969710	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB	1082	broad.mit.edu	37	19	49539372	49539372	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6214700	6214700	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	447415	447415	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85119852	85119852	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85158837	85158837	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61981097	61981097	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHTF18	63922	broad.mit.edu	37	16	848001	848001	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26817904	26817904	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIITA	4261	broad.mit.edu	37	16	11000948	11000948	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87031533	87031533	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87045876	87045876	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCNKA	1187	broad.mit.edu	37	1	16356212	16356212	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC10A	10462	broad.mit.edu	37	17	6978642	6978642	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC2L	154790	broad.mit.edu	37	7	139219202	139219202	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPB	81570	broad.mit.edu	37	11	72005147	72005147	+	Silent	SNP	C	A	A	rs141458508	byFrequency	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57759573	57759573	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	87878781	87878781	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA1	1259	broad.mit.edu	37	4	47945102	47945102	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150907120	150907120	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNST	163882	broad.mit.edu	37	1	246823460	246823460	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTFR	1271	broad.mit.edu	37	9	34552645	34552645	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41419119	41419119	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100141962	100141962	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39103845	39103845	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39154376	39154376	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125405480	125405480	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230820988	230820988	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103387028	103387028	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33143702	33143702	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75839971	75839971	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121295836	121295836	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70894799	70894799	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL20A1	57642	broad.mit.edu	37	20	61957095	61957095	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139629009	139629009	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86488261	86488261	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109862705	109862705	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130095473	130095473	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189915945	189915945	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189925510	189925510	+	Splice_Site	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	71012515	71012515	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61459170	61459170	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3691504	3691504	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160275343	160275343	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ5	84274	broad.mit.edu	37	12	120960561	120960561	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPAMD8	27151	broad.mit.edu	37	19	17085965	17085965	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPLX2	10814	broad.mit.edu	37	5	175305868	175305868	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131283074	131283074	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE8	144402	broad.mit.edu	37	12	39156000	39156000	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPT1C	126129	broad.mit.edu	37	19	50213543	50213543	+	Intron	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28610176	28610176	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPAK	285464	broad.mit.edu	37	4	1388837	1388867	+	Frame_Shift_Del	DEL	TCACACGTGCCAACGTGGAGTGCCCGCCTGA	-	-	rs74511366	byFrequency;by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPT	9419	broad.mit.edu	37	2	46846824	46846824	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGN	155051	broad.mit.edu	37	7	151135214	151135214	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSHL1	1444	broad.mit.edu	37	17	61988148	61988148	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4494769	4494769	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113236882	113236882	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113241000	113241000	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113326136	113326136	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST8	10047	broad.mit.edu	37	20	23472318	23472318	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9L	128821	broad.mit.edu	37	20	23546595	23546595	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSTF2	1478	broad.mit.edu	37	X	100087795	100087795	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CT45A1	541466	broad.mit.edu	37	X	134856880	134856880	+	3'UTR	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE6	340307	broad.mit.edu	37	7	143453540	143453540	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11199707	11199707	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41473264	41473264	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSL2	1515	broad.mit.edu	37	9	99799652	99799652	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2NL	55917	broad.mit.edu	37	1	112958687	112958687	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117359696	117359696	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43019062	43019062	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADR	1525	broad.mit.edu	37	21	18933874	18933874	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf61	203413	broad.mit.edu	37	X	115593934	115593934	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R4	51167	broad.mit.edu	37	6	84627835	84627835	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R4	51167	broad.mit.edu	37	6	84650150	84650150	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYBB	1536	broad.mit.edu	37	X	37658310	37658310	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143957750	143957750	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2B6	1555	broad.mit.edu	37	19	41518371	41518371	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH2	9266	broad.mit.edu	37	19	48981804	48981804	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39381532	39381532	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39381544	39381544	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176894891	176894891	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104433128	104433129	+	Intron	INS	-	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF17	80067	broad.mit.edu	37	2	172337513	172337513	+	Silent	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L1	285429	broad.mit.edu	37	4	41984938	41984938	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6655050	6655050	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155219046	155219046	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36521632	36521632	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCN	1634	broad.mit.edu	37	12	91550779	91550779	+	Intron	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI1	414301	broad.mit.edu	37	11	103908338	103908338	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108547737	108547737	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX43	55510	broad.mit.edu	37	6	74115454	74115454	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169182261	169182261	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB110	245913	broad.mit.edu	37	6	49989688	49989688	+	Translation_Start_Site	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31586069	31586069	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB59	494513	broad.mit.edu	37	2	179319922	179319922	+	Intron	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42793811	42793811	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137294433	137294433	+	Intron	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHCR7	1717	broad.mit.edu	37	11	71146760	71146760	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41597599	41597599	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96171606	96171606	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223178057	223178057	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKC1	1736	broad.mit.edu	37	X	153999154	153999154	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKC1	1736	broad.mit.edu	37	X	154001256	154001256	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83501919	83501919	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83502395	83502395	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79555726	79555726	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL1	28514	broad.mit.edu	37	6	170594559	170594559	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	33229438	33229438	+	5'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88583076	88583076	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88584032	88584032	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL2	23312	broad.mit.edu	37	15	51756966	51756966	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21789479	21789479	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76539980	76539980	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21051299	21051299	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38840708	38840708	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11583981	11583981	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11672316	11672316	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72281270	72281270	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183605255	183605255	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101639582	101639582	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98084190	98084190	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117739208	117739208	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117770346	117770346	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117782933	117782933	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	128817119	128817119	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169454779	169454779	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111484739	111484739	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111517025	111517025	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP2	64174	broad.mit.edu	37	16	68036948	68036948	+	5'Flank	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116510839	116510839	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35201629	35201629	+	5'UTR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2	283417	broad.mit.edu	37	12	64045440	64045440	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100505910	100505911	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100509421	100509421	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28719723	28719723	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28906836	28906836	+	Splice_Site	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28913555	28913555	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29038552	29038552	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29046559	29046559	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29054364	29054364	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG4	147409	broad.mit.edu	37	18	28981003	28981003	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX1	1840	broad.mit.edu	37	12	113534584	113534585	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95442627	95442627	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F2	1870	broad.mit.edu	37	1	23847583	23847583	+	Intron	SNP	C	A	A	rs137863297	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67913196	67913196	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78492704	78492704	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49644012	49644012	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC2	80258	broad.mit.edu	37	X	44094637	44094637	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42942220	42942220	+	Intron	DEL	G	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR1	1958	broad.mit.edu	37	5	137802793	137802793	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR4	1961	broad.mit.edu	37	2	73518710	73518710	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD3	30845	broad.mit.edu	37	2	31483646	31483646	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHF	26298	broad.mit.edu	37	11	34664191	34664191	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1	10209	broad.mit.edu	37	17	39846406	39846406	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6080771	6080771	+	Missense_Mutation	SNP	G	A	A	rs143036043	byFrequency	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B3	8891	broad.mit.edu	37	1	45446642	45446642	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF5	1983	broad.mit.edu	37	14	103804756	103804757	+	In_Frame_Ins	INS	-	CAC	CAC	rs148191276		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELK1	2002	broad.mit.edu	37	X	47497343	47497343	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79403823	79403823	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101063285	101063285	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMID2	136227	broad.mit.edu	37	7	101183184	101183184	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMP2	2013	broad.mit.edu	37	16	10631774	10631774	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP3	5169	broad.mit.edu	37	6	132047241	132047241	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5395218	5395218	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB42	2038	broad.mit.edu	37	15	43503780	43503780	+	Intron	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB2	2048	broad.mit.edu	37	1	23219270	23219270	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6L	54821	broad.mit.edu	37	X	71425016	71425016	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158542440	158542440	+	Intron	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5L	115704	broad.mit.edu	37	19	7925449	7925449	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133692564	133692564	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXTL1	2134	broad.mit.edu	37	1	26356998	26356998	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F10	2159	broad.mit.edu	37	13	113803753	113803753	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11R	50848	broad.mit.edu	37	1	160970372	160970372	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169525912	169525912	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154157135	154157135	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138619418	138619418	+	Intron	SNP	C	A	A	rs4149679	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139151240	139151240	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153C	653316	broad.mit.edu	37	5	177473998	177473998	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM175A	84142	broad.mit.edu	37	4	84383867	84383867	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM177B	400823	broad.mit.edu	37	1	222922752	222922752	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188A	80013	broad.mit.edu	37	10	15883599	15883599	+	Splice_Site	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM193B	54540	broad.mit.edu	37	5	176951058	176951058	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM193B	54540	broad.mit.edu	37	5	176951068	176951068	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM26D	221301	broad.mit.edu	37	6	116879196	116879196	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM50A	9130	broad.mit.edu	37	X	153674079	153674079	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166039616	166039616	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82A1	151393	broad.mit.edu	37	2	38294239	38294239	+	3'UTR	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150924435	150924435	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92088025	92088025	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92088206	92088206	+	Silent	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO31	79791	broad.mit.edu	37	16	87368896	87368896	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1G	2207	broad.mit.edu	37	1	161188514	161188514	+	Splice_Site	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161479723	161479723	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO1	23149	broad.mit.edu	37	19	17865961	17865961	+	5'UTR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHSD1	89848	broad.mit.edu	37	5	141022678	141022679	+	Intron	INS	-	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLA	84824	broad.mit.edu	37	1	161682007	161682007	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125033682	125033682	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125047632	125047632	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108171400	108171400	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125351420	125351420	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIGN	55137	broad.mit.edu	37	2	164467657	164467657	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152287711	152287711	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153590548	153590548	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29008057	29008057	+	Missense_Mutation	SNP	G	T	T	rs139202898		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180036999	180037000	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240307117	240307117	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240374282	240374282	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240635819	240635819	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147030276	147030276	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89395461	89395461	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXJ3	22887	broad.mit.edu	37	1	42776663	42776663	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXL2	668	broad.mit.edu	37	3	138665316	138665316	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPGT	8790	broad.mit.edu	37	1	74671565	74671565	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79367867	79367867	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14788867	14788867	+	Intron	SNP	T	C	C	rs140362610	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190878635	190878635	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4B	23150	broad.mit.edu	37	3	69521296	69521296	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12736044	12736044	+	Silent	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48572899	48572899	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSIP1	161835	broad.mit.edu	37	15	40018855	40018855	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZR1	51343	broad.mit.edu	37	19	3527169	3527169	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
G3BP1	10146	broad.mit.edu	37	5	151166233	151166233	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB3	139716	broad.mit.edu	37	X	153906437	153906437	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB3	139716	broad.mit.edu	37	X	153941734	153941734	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46252686	46252686	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46312365	46312365	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151336957	151336957	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161113500	161113500	+	Intron	SNP	C	G	G	rs113567255		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46060349	46060349	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26569888	26569888	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAK	2580	broad.mit.edu	37	4	871403	871403	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST2	64090	broad.mit.edu	37	2	242716406	242716406	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31189191	31189191	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT5	11227	broad.mit.edu	37	2	158114923	158114923	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT7	51809	broad.mit.edu	37	4	174238925	174238925	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATS	352954	broad.mit.edu	37	7	99799011	99799011	+	3'UTR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89732129	89732129	+	Silent	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC1	79571	broad.mit.edu	37	7	127223354	127223354	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120599747	120599747	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48413982	48413982	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158409161	158409161	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61994662	61994662	+	3'UTR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61959189	61959189	+	5'UTR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6532950	6532950	+	3'UTR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175604184	175604184	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175688072	175688072	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129442128	129442128	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMCL1L	64396	broad.mit.edu	37	5	177613573	177613573	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57485266	57485266	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL3L	54552	broad.mit.edu	37	X	54567837	54567837	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNRHR	2798	broad.mit.edu	37	4	68610586	68610586	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20327419	20327419	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPKOW	27238	broad.mit.edu	37	X	48972137	48972137	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR111	222611	broad.mit.edu	37	6	47645719	47645719	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR120	338557	broad.mit.edu	37	10	95335703	95335703	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100356236	100356236	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131621617	131621617	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR150	285601	broad.mit.edu	37	5	94956254	94956254	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25886911	25886911	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR161	23432	broad.mit.edu	37	1	168066241	168066241	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR26	2849	broad.mit.edu	37	10	125426527	125426527	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR78	27201	broad.mit.edu	37	4	8589099	8589099	+	3'UTR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89979399	89979399	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRASP2	114928	broad.mit.edu	37	X	101969960	101969960	+	Frame_Shift_Del	DEL	A	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRIN3	285513	broad.mit.edu	37	4	90168977	90168977	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11728879	11728879	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94376753	94376753	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA4	2941	broad.mit.edu	37	6	52852158	52852158	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144714907	144714907	+	Splice_Site	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108619476	108619476	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108631889	108631889	+	Splice_Site	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYS2	2998	broad.mit.edu	37	12	21712497	21712497	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMA	3001	broad.mit.edu	37	5	54405931	54405931	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122626456	122626456	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAT1	8520	broad.mit.edu	37	2	172821868	172821868	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAX1	10456	broad.mit.edu	37	1	154247798	154247798	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45262167	45262167	+	Silent	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45461867	45461867	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83581269	83581269	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124732515	124732515	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC5	51191	broad.mit.edu	37	4	89415467	89415467	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXIM1	10614	broad.mit.edu	37	17	43227463	43227463	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75061718	75061718	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKDC1	80201	broad.mit.edu	37	10	71007006	71007006	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186106580	186106580	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186135820	186135820	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43042431	43042431	+	Silent	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA1L2	144983	broad.mit.edu	37	13	53217101	53217102	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27147490	27147490	+	3'UTR	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175110971	175110971	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH3	11255	broad.mit.edu	37	20	60791902	60791902	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS6ST2	90161	broad.mit.edu	37	X	131762609	131762609	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B12	51144	broad.mit.edu	37	11	43755399	43755399	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B12	51144	broad.mit.edu	37	11	43772331	43772331	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B13	345275	broad.mit.edu	37	4	88231548	88231548	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118866961	118866961	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7P2	158160	broad.mit.edu	37	10	38667062	38667062	+	RNA	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B1	3283	broad.mit.edu	37	1	120056732	120056732	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA13	6782	broad.mit.edu	37	21	15755506	15755506	+	5'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA7	3311	broad.mit.edu	37	1	161577250	161577250	+	3'UTR	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135592352	135592352	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR2C	3358	broad.mit.edu	37	X	113865275	113865275	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3E	285242	broad.mit.edu	37	3	183824008	183824008	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR4	3360	broad.mit.edu	37	5	147889330	147889330	+	Silent	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53561453	53561453	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71212908	71212908	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148586553	148586553	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD1	3475	broad.mit.edu	37	7	112108010	112108010	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT140	9742	broad.mit.edu	37	16	1616135	1616135	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT74	80173	broad.mit.edu	37	9	26999580	26999580	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1	3479	broad.mit.edu	37	12	102813513	102813513	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFN1	91156	broad.mit.edu	37	1	201196209	201196209	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGLL3	91353	broad.mit.edu	37	22	25714119	25714119	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151166649	151166649	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151166651	151166651	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118623377	118623377	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118645047	118645047	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130411007	130411007	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130415406	130415406	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18554341	18554341	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF5	150084	broad.mit.edu	37	21	41165450	41165450	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F9	56300	broad.mit.edu	37	2	113742503	113742503	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22RA2	116379	broad.mit.edu	37	6	137479413	137479413	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22	50616	broad.mit.edu	37	12	68642443	68642443	+	3'UTR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55201965	55201965	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31RA	133396	broad.mit.edu	37	5	55206564	55206564	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4R	3566	broad.mit.edu	37	16	27372178	27372178	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120608008	120608008	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4A	3631	broad.mit.edu	37	2	99170827	99170827	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42451883	42451883	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2	3673	broad.mit.edu	37	5	52376359	52376359	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31422253	31422253	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187511634	187511634	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31367143	31367143	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31391128	31391128	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB1BP1	9270	broad.mit.edu	37	2	9547108	9547108	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46321680	46321680	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7759491	7759491	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54817378	54817378	+	Silent	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6083359	6083359	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27084631	27084631	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL2	83473	broad.mit.edu	37	18	44627236	44627236	+	Splice_Site	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73849569	73849569	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163374550	163374550	+	Silent	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH7	90134	broad.mit.edu	37	2	163393400	163393400	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK17	89822	broad.mit.edu	37	6	39271904	39271904	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD16	57528	broad.mit.edu	37	5	143586840	143586840	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD8	386617	broad.mit.edu	37	4	44176822	44176822	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM4C	23081	broad.mit.edu	37	9	7049148	7049148	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5B	10765	broad.mit.edu	37	1	202736142	202736142	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55963855	55963855	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55971027	55971027	+	Silent	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHK	3795	broad.mit.edu	37	2	27315392	27315392	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319	9856	broad.mit.edu	37	6	24582439	24582439	+	Intron	SNP	G	T	T	rs144288503	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0430	9665	broad.mit.edu	37	16	15694630	15694630	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42465423	42465423	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96976537	96976537	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96997507	96997507	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0892	23383	broad.mit.edu	37	19	19449669	19449669	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0947	23379	broad.mit.edu	37	5	5454625	5454625	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24810883	24810883	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109715046	109715046	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138604108	138604108	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1916778	1916778	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF12	113220	broad.mit.edu	37	9	116859806	116859806	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241726813	241726813	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91479222	91479222	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39709677	39709677	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF22	3835	broad.mit.edu	37	16	29810961	29810961	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901662	51901662	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45227636	45227636	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC3	116138	broad.mit.edu	37	6	42985740	42985740	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC8B	200942	broad.mit.edu	37	3	49213241	49213241	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70681523	70681523	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL7	55975	broad.mit.edu	37	7	23213895	23213895	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK12	43849	broad.mit.edu	37	19	51534202	51534202	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRD1	3824	broad.mit.edu	37	12	10466042	10466042	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135012623	135012623	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123054448	123054448	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT33A	3883	broad.mit.edu	37	17	39506922	39506923	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39597226	39597226	+	5'UTR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52980816	52980816	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52790834	52790834	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-4	337971	broad.mit.edu	37	21	31869431	31869431	+	5'Flank	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-9	3846	broad.mit.edu	37	11	71260011	71260011	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-2	337967	broad.mit.edu	37	21	31971153	31971153	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-3	337968	broad.mit.edu	37	21	31964888	31964888	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTI12	112970	broad.mit.edu	37	1	52499255	52499255	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143685270	143685270	+	Silent	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143712385	143712385	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153133425	153133425	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153135652	153135652	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129479461	129479461	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129513743	129513743	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107600006	107600006	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCMT1	51451	broad.mit.edu	37	16	25175866	25175866	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN8	138307	broad.mit.edu	37	9	139650836	139650836	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136566900	136566900	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB1	8861	broad.mit.edu	37	10	103869025	103869025	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88451570	88451570	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9C	654346	broad.mit.edu	37	17	18391107	18391107	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9C	654346	broad.mit.edu	37	17	18391139	18391139	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI1	9211	broad.mit.edu	37	10	95557398	95557398	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202287530	202287530	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55085876	55085876	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMF1	64788	broad.mit.edu	37	16	929718	929718	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76427584	76427584	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96329351	96329351	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45622787	45622787	+	Intron	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440173	440173	broad.mit.edu	37	9	89626736	89626736	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644669	644669	broad.mit.edu	37	18	15322340	15322340	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91809334	91809334	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118124489	118124489	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOR	4014	broad.mit.edu	37	1	153233506	153233506	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160888578	160888578	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR4	2846	broad.mit.edu	37	X	78011509	78011509	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	81968033	81968033	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62445259	62445259	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPL	4023	broad.mit.edu	37	8	19809435	19809435	+	Silent	SNP	G	C	C	rs1121923	byFrequency;by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188590546	188590546	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH2	57631	broad.mit.edu	37	X	114357602	114357602	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141660833	141660833	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46894955	46894955	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76372225	76372225	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC52	440699	broad.mit.edu	37	1	165532688	165532688	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74507409	74507409	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40748355	40748355	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM2	26045	broad.mit.edu	37	5	138210660	138210660	+	5'UTR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSG1	55341	broad.mit.edu	37	3	194373629	194373629	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM5	23658	broad.mit.edu	37	7	32530016	32530016	+	5'UTR	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33518427	33518427	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24759897	24759897	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160765944	160765944	+	5'UTR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEA	10296	broad.mit.edu	37	4	1309087	1309087	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEA	10296	broad.mit.edu	37	4	1309148	1309148	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEA	10296	broad.mit.edu	37	4	1309161	1309161	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA10	4109	broad.mit.edu	37	X	151303053	151303053	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995442	140995442	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141292017	141292017	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED1	9500	broad.mit.edu	37	X	51639712	51639712	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGT1	84061	broad.mit.edu	37	X	77112882	77112882	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML1	9794	broad.mit.edu	37	5	179192681	179192681	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A2	4122	broad.mit.edu	37	15	91450480	91450480	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71493793	71493793	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172942609	172942609	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39086175	39086175	+	Nonsense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP9	79884	broad.mit.edu	37	4	156296835	156296835	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK10	5602	broad.mit.edu	37	4	87019676	87019676	+	Splice_Site	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK11	5600	broad.mit.edu	37	22	50705474	50705474	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKBP1	23005	broad.mit.edu	37	15	42105978	42105978	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPRE3	22924	broad.mit.edu	37	2	27247075	27247075	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16177774	16177774	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164450168	164450168	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119731997	119731997	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186953834	186953834	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3781689	3781689	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAX	4149	broad.mit.edu	37	14	65544631	65544631	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13825812	13825812	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13826320	13826320	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART6	401612	broad.mit.edu	37	X	103349150	103349150	+	Missense_Mutation	SNP	C	A	A	rs12862951		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112389746	112389746	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM3AP	8888	broad.mit.edu	37	21	47704209	47704209	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM4	4173	broad.mit.edu	37	8	48874496	48874496	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47530668	47530668	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47530771	47530771	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	150883129	150883129	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70341002	70341002	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70352931	70352931	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42095530	42095530	+	5'UTR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42172324	42172324	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEPE	56955	broad.mit.edu	37	4	88766962	88766962	+	Silent	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MERTK	10461	broad.mit.edu	37	2	112786078	112786078	+	Silent	SNP	G	A	A	rs139897984		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141767034	141767034	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICB	4277	broad.mit.edu	37	6	31477804	31477804	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR135A1	406925	broad.mit.edu	37	3	52328239	52328239	+	RNA	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR379	494328	broad.mit.edu	37	14	101488468	101488468	+	RNA	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR411	693121	broad.mit.edu	37	14	101488486	101488486	+	5'Flank	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR578	693163	broad.mit.edu	37	4	166307395	166307395	+	RNA	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLEC	9761	broad.mit.edu	37	12	121132798	121132798	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151962128	151962128	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151962241	151962241	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT6	4302	broad.mit.edu	37	17	36875767	36875767	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP26	56547	broad.mit.edu	37	11	5010946	5010946	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MN1	4330	broad.mit.edu	37	22	28194003	28194003	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOG	4340	broad.mit.edu	37	6	29627268	29627268	+	Silent	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108833273	108833273	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC3	23515	broad.mit.edu	37	21	37728869	37728870	+	Intron	INS	-	TTATC	TTATC			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4L2	9643	broad.mit.edu	37	X	102931732	102931732	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOSPD1	56180	broad.mit.edu	37	X	134030761	134030761	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154019431	154019431	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP2	4355	broad.mit.edu	37	17	41958262	41958262	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPZL1	9019	broad.mit.edu	37	1	167745276	167745276	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL30	51263	broad.mit.edu	37	2	99811100	99811100	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS2	51116	broad.mit.edu	37	9	138395820	138395820	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS6	64968	broad.mit.edu	37	21	35514622	35514622	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60160345	60160345	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A6A	64231	broad.mit.edu	37	11	59947340	59947340	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A8B	83661	broad.mit.edu	37	11	60482705	60482705	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754925	72754925	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSGN1	343930	broad.mit.edu	37	2	17998189	17998189	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31726371	31726371	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSN	4478	broad.mit.edu	37	X	64949255	64949255	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149906027	149906027	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9049773	9049773	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100675916	100675916	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100684439	100684439	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100692276	100692276	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUTYH	4595	broad.mit.edu	37	1	45798700	45798700	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3247989	3247989	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47356833	47356833	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCT1	80177	broad.mit.edu	37	6	153027241	153027241	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10265460	10265460	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108214565	108214565	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10541071	10541071	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23866799	23866799	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10300383	10300383	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLIP	29116	broad.mit.edu	37	6	16130898	16130898	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26400716	26400716	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8595473	8595473	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76545769	76545769	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76867814	76867814	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17322842	17322842	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24383961	24383961	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69881655	69881655	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101833607	101833607	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78582310	78582310	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15372560	15372560	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145440162	145440162	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891109	16891109	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16894492	16894492	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113076759	113076759	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6631034	6631034	+	Silent	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA2	10499	broad.mit.edu	37	8	71185975	71185975	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73406646	73406646	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130852932	130852932	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21581860	21581860	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	21136997	21136997	+	5'Flank	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFS1	9054	broad.mit.edu	37	20	34278354	34278354	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGB	58157	broad.mit.edu	37	14	77732669	77732669	+	3'UTR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233791842	233791842	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFR	4804	broad.mit.edu	37	17	47583905	47583905	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPA1	123606	broad.mit.edu	37	15	23060868	23060868	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124676334	124676334	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63502281	63502281	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768166	63768166	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56499322	56499322	+	3'UTR	SNP	C	A	A	rs138338429	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT1	64802	broad.mit.edu	37	1	10041188	10041188	+	Silent	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL6	65083	broad.mit.edu	37	9	33468622	33468622	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117693686	117693686	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117698478	117698478	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26114667	26114667	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	26918160	26918160	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX1	27035	broad.mit.edu	37	X	100105367	100105367	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44561205	44561205	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPPS	9520	broad.mit.edu	37	17	45608960	45608960	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100955646	100955646	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A2	4929	broad.mit.edu	37	2	157183331	157183331	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115405559	115405559	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSDHL	50814	broad.mit.edu	37	X	152037712	152037713	+	3'UTR	INS	-	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG2	84628	broad.mit.edu	37	9	135102363	135102363	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUFIP1	26747	broad.mit.edu	37	13	45517710	45517711	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102335190	102335190	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101818278	101818278	+	RNA	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NYNRIN	57523	broad.mit.edu	37	14	24884537	24884537	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113445542	113445542	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113446823	113446823	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128696344	128696344	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1MW	2652	broad.mit.edu	37	X	153490694	153490694	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1SW	611	broad.mit.edu	37	7	128413825	128413825	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1SW	611	broad.mit.edu	37	7	128413885	128413885	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K1	391109	broad.mit.edu	37	1	158435355	158435355	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450300	158450300	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13H1	347468	broad.mit.edu	37	X	130678719	130678719	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248684970	248684970	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248185161	248185161	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247679	248247680	+	Intron	DNP	GG	TT	TT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248262995	248262995	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308657	248308657	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436889	248436889	+	Silent	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T34	127068	broad.mit.edu	37	1	248737546	248737546	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525735	248525735	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A16	81327	broad.mit.edu	37	11	55111208	55111208	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51412190	51412190	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55340249	55340249	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247798	56247798	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406611	55406611	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51G2	81282	broad.mit.edu	37	11	4936940	4936940	+	5'Flank	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52L1	338751	broad.mit.edu	37	11	6007393	6007393	+	Silent	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H14	403273	broad.mit.edu	37	3	97868309	97868309	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M11	219487	broad.mit.edu	37	11	56310300	56310300	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158747401	158747401	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Q1	219952	broad.mit.edu	37	11	57799282	57799282	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D4	338662	broad.mit.edu	37	11	123777147	123777147	+	Silent	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8S1	341568	broad.mit.edu	37	12	48919247	48919247	+	5'Flank	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC2L	4999	broad.mit.edu	37	2	201800586	201800586	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC2L	4999	broad.mit.edu	37	2	201822281	201822281	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL10	114884	broad.mit.edu	37	3	31724991	31724991	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL7	114881	broad.mit.edu	37	17	45886170	45886170	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD3	23252	broad.mit.edu	37	1	20234014	20234014	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29630602	29630602	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVGP1	5016	broad.mit.edu	37	1	111966126	111966126	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAIP1	10605	broad.mit.edu	37	5	43535036	43535036	+	Silent	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110435808	110435808	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110439861	110439861	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPLN	89932	broad.mit.edu	37	14	73733266	73733266	+	Silent	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39590759	39590759	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176709301	176709301	+	Nonsense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161771155	161771155	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150773214	150773214	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52621347	52621347	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBXIP1	57326	broad.mit.edu	37	1	154920450	154920450	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91090681	91090681	+	Missense_Mutation	SNP	G	T	T	rs34165727		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133455	91133455	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55626444	55626444	+	Silent	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58240775	58240775	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99662981	99662981	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30723485	30723485	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140262933	140262933	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140182888	140182888	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222831	140222831	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140574557	140574557	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140595649	140595649	+	Missense_Mutation	SNP	C	T	T	rs141899378		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB16	57717	broad.mit.edu	37	5	140563269	140563269	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140812476	140812476	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB6	56100	broad.mit.edu	37	5	140788541	140788541	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82585288	82585288	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47754257	47754257	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142545905	142545905	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK7	9159	broad.mit.edu	37	11	117089187	117089187	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE2A	5138	broad.mit.edu	37	11	72293420	72293420	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144874542	144874543	+	Intron	DNP	CC	AA	AA			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144886093	144886093	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39876088	39876088	+	Intron	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15229592	15229593	+	Intron	DNP	CC	GA	GA			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31725552	31725552	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57325336	57325336	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57335710	57335710	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54978579	54978579	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM2L1	283209	broad.mit.edu	37	11	74049567	74049567	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133806689	133806689	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21B	112885	broad.mit.edu	37	22	45309683	45309683	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA1	5255	broad.mit.edu	37	X	71877521	71877521	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47622698	47622698	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98411062	98411062	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R1	5295	broad.mit.edu	37	5	67569148	67569148	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8791869	8791869	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71606220	71606221	+	Intron	DNP	GG	TT	TT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITX2	5308	broad.mit.edu	37	4	111539909	111539909	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81167252	81167252	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51640784	51640784	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX1	5316	broad.mit.edu	37	21	44430034	44430034	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42302338	42302338	+	Frame_Shift_Del	DEL	A	-	-	rs28736629		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAA	9373	broad.mit.edu	37	9	26917217	26917217	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAGL1	5325	broad.mit.edu	37	6	144263191	144263191	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAGL2	5326	broad.mit.edu	37	20	30785030	30785030	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9402202	9402202	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD4	122618	broad.mit.edu	37	14	105396484	105396484	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK4	10733	broad.mit.edu	37	4	128812264	128812264	+	Silent	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLTP	5360	broad.mit.edu	37	20	44540080	44540080	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126730864	126730864	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126741729	126741729	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB3	5365	broad.mit.edu	37	X	153035264	153035264	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129275994	129275994	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMPCB	9512	broad.mit.edu	37	7	102938970	102938970	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2	5395	broad.mit.edu	37	7	6038725	6038725	+	Intron	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152938117	152938117	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140441712	140441712	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC1A	25886	broad.mit.edu	37	3	52183986	52183986	+	Missense_Mutation	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLM	27434	broad.mit.edu	37	7	44118469	44118469	+	Intron	SNP	C	G	G	rs150582649	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86260759	86260759	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2D	5433	broad.mit.edu	37	2	128610417	128610417	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106804616	106804616	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103905	53103905	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38144090	38144090	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43152321	43152321	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122280680	122280680	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23814313	23814313	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37536417	37536417	+	Intron	SNP	G	C	C	rs112917272		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37536806	37536806	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146257541	146257541	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12854358	12854358	+	Nonsense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRCC	5546	broad.mit.edu	37	1	156770211	156770211	+	Nonsense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM4	11108	broad.mit.edu	37	12	108147786	108147786	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68984685	68984685	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186276820	186276820	+	Missense_Mutation	SNP	A	G	G	rs142325425		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24231390	24231390	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30133012	30133012	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG2	5593	broad.mit.edu	37	4	82125934	82125934	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROL1	58503	broad.mit.edu	37	4	71275675	71275676	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROX1	5629	broad.mit.edu	37	1	214170994	214170994	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36459085	36459085	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS21	10942	broad.mit.edu	37	16	2870849	2870849	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79259674	79259674	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43530356	43530356	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMG2	56984	broad.mit.edu	37	18	12724672	12724672	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11583942	11583942	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCRA	171558	broad.mit.edu	37	6	42890818	42890818	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS2	81490	broad.mit.edu	37	11	474085	474085	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70948943	70948943	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198703333	198703333	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8340348	8340349	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157387960	157387960	+	Silent	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN	5798	broad.mit.edu	37	2	220172160	220172160	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40828068	40828068	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40979483	40979483	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40981015	40981015	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20483206	20483206	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52233591	52233591	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52366224	52366224	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRSL1	55278	broad.mit.edu	37	6	107100454	107100454	+	Silent	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABEP2	79874	broad.mit.edu	37	16	28919868	28919868	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17697542	17697542	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36230167	36230167	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20617969	20617969	+	Intron	DEL	T	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109389243	109389243	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF5	9771	broad.mit.edu	37	7	22175692	22175692	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL3	64926	broad.mit.edu	37	19	15567097	15567097	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF2	9770	broad.mit.edu	37	20	4764972	4764972	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF6	166824	broad.mit.edu	37	4	74459028	74459028	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF6	166824	broad.mit.edu	37	4	74477409	74477409	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1CC1	9821	broad.mit.edu	37	8	53573726	53573726	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47039450	47039450	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114384065	114384065	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36122148	36122148	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48382057	48382057	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36080721	36080721	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312761	79312761	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254365	79254365	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103183200	103183200	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103322543	103322543	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108496518	108496518	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240990412	240990412	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHEB	6009	broad.mit.edu	37	7	151198983	151198983	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40500615	40500615	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLIM	51132	broad.mit.edu	37	X	73811822	73811822	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31436063	31436063	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF112	7732	broad.mit.edu	37	17	19318159	19318159	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF128	79589	broad.mit.edu	37	X	106034405	106034405	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141868675	141868675	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74151253	74151253	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25404638	25404638	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF217	154214	broad.mit.edu	37	6	125366429	125366429	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68895518	68895518	+	Silent	SNP	G	T	T	rs121917745		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68904918	68904918	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL10L	140801	broad.mit.edu	37	14	47121002	47121002	+	5'UTR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP1	132112	broad.mit.edu	37	3	186915369	186915369	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32336009	32336009	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP2	122042	broad.mit.edu	37	13	32355909	32355910	+	Intron	DNP	GG	TT	TT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38976771	38976771	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39010054	39010054	+	Missense_Mutation	SNP	G	T	T	rs143533100		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237494122	237494122	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237580393	237580393	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237732578	237732578	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237969682	237969682	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130535490	130535490	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASH3	54440	broad.mit.edu	37	X	128925035	128925035	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200188633	200188633	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	9980858	9980858	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP5	192683	broad.mit.edu	37	15	75309110	75309110	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	76866552	76866552	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB1D2	10647	broad.mit.edu	37	11	62010767	62010767	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB2A1	4246	broad.mit.edu	37	11	61977750	61977750	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDAD1	55153	broad.mit.edu	37	4	76882214	76882214	+	Silent	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50052625	50052625	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC11C	90701	broad.mit.edu	37	18	56822759	56822759	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83634655	83634655	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3C	10512	broad.mit.edu	37	7	80374574	80374574	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3F	6405	broad.mit.edu	37	3	50197202	50197211	+	Intron	DEL	CCTCTCTTTA	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115814324	115814324	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115831129	115831129	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151109355	151109355	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151112131	151112131	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMG2	6407	broad.mit.edu	37	20	43851752	43851752	+	Silent	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP5	205564	broad.mit.edu	37	3	196650449	196650449	+	Intron	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERAC1	84947	broad.mit.edu	37	6	158532359	158532359	+	3'UTR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC3	10955	broad.mit.edu	37	20	43129651	43129651	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA7	6906	broad.mit.edu	37	X	105280839	105280839	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA7	6906	broad.mit.edu	37	X	105281019	105281019	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESTD1	91404	broad.mit.edu	37	2	180041248	180041248	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK223	157285	broad.mit.edu	37	8	8234236	8234236	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3D19	152503	broad.mit.edu	37	4	152056103	152056103	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC16	400709	broad.mit.edu	37	19	50474602	50474602	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3677378	3677378	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232568021	232568021	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164716197	164716197	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164735641	164735641	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164776800	164776800	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164777184	164777184	+	Intron	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAIN2	57606	broad.mit.edu	37	4	48412965	48412965	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A3	8273	broad.mit.edu	37	X	153716008	153716008	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A1	6557	broad.mit.edu	37	15	48513130	48513130	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44672001	44672001	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A4	121260	broad.mit.edu	37	12	129285335	129285335	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119017450	119017450	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A3	6507	broad.mit.edu	37	5	36671334	36671334	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A4	6509	broad.mit.edu	37	2	65245590	65245590	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A4	6509	broad.mit.edu	37	2	65245592	65245592	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A14	9016	broad.mit.edu	37	X	129499532	129499532	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A16	8034	broad.mit.edu	37	10	70259759	70259759	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A18	83733	broad.mit.edu	37	22	18064010	18064010	+	Intron	SNP	C	A	A	rs140144096	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128351810	128351810	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A10	81031	broad.mit.edu	37	20	45362393	45362393	+	Splice_Site	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A9	10463	broad.mit.edu	37	4	42037187	42037187	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35A2	7355	broad.mit.edu	37	X	48762039	48762039	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A8	64116	broad.mit.edu	37	4	103189243	103189243	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75805205	75805205	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72332028	72332028	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A11	115584	broad.mit.edu	37	16	24919143	24919143	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A5	6528	broad.mit.edu	37	19	17994461	17994461	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A1	6529	broad.mit.edu	37	3	11078613	11078613	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55733607	55733607	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170214370	170214370	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40657385	40657385	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173571086	173571086	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20255565	20255565	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20619132	20619132	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168212820	168212820	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144903893	144903893	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142718244	142718244	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCAIP	9627	broad.mit.edu	37	5	121759192	121759192	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127528055	127528055	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-11	767589	broad.mit.edu	37	14	101433568	101433568	+	5'Flank	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-3	767579	broad.mit.edu	37	14	101419575	101419575	+	5'Flank	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP40	9410	broad.mit.edu	37	1	31769581	31769581	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1168598	1168598	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101630056	101630056	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231149104	231149104	+	Missense_Mutation	SNP	G	C	C	rs142957886		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118555088	118555088	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG4	6676	broad.mit.edu	37	20	34205716	34205716	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140358427	140358427	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217955618	217955618	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	124011851	124011851	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPC25	57405	broad.mit.edu	37	2	169745772	169745772	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIB	6689	broad.mit.edu	37	19	50926091	50926091	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158627111	158627111	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30740811	30740811	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRFBP1	153443	broad.mit.edu	37	5	121311046	121311046	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPX	8406	broad.mit.edu	37	X	38080652	38080652	+	5'Flank	DEL	G	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149479975	149479975	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX2IP	117178	broad.mit.edu	37	1	85115658	85115658	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX7	280658	broad.mit.edu	37	X	52682698	52682698	+	Intron	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53084901	53084901	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107423189	107423189	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17401499	17401500	+	Intron	INS	-	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC3	246329	broad.mit.edu	37	12	57640563	57640563	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67938333	67938333	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40474933	40474933	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK24	8428	broad.mit.edu	37	13	99171847	99171847	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37152241	37152241	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP2	6813	broad.mit.edu	37	19	7712288	7712288	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53084700	53084701	+	Intron	INS	-	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP6	29091	broad.mit.edu	37	14	25288228	25288228	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1L1	283507	broad.mit.edu	37	13	41399795	41399795	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70513913	70513913	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46307517	46307517	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46313277	46313277	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV39H1	6839	broad.mit.edu	37	X	48558670	48558670	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46330801	46330801	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46341918	46341918	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152501421	152501421	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNM	23336	broad.mit.edu	37	15	99672854	99672854	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYP	6855	broad.mit.edu	37	X	49048117	49048117	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT6	148281	broad.mit.edu	37	1	114640403	114640403	+	Frame_Shift_Del	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL1	84958	broad.mit.edu	37	1	27679943	27679943	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75276688	75276688	+	Silent	SNP	G	A	A	rs150773283		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70614045	70614045	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150463952	150463952	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635640	122635640	+	Missense_Mutation	SNP	C	G	G	rs79856696	byFrequency;by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R1	50834	broad.mit.edu	37	5	9629204	9629204	+	3'UTR	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R1	50834	broad.mit.edu	37	5	9629953	9629953	+	Nonsense_Mutation	SNP	G	C	C	rs139834398		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAT	6898	broad.mit.edu	37	16	71606283	71606283	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D17	79735	broad.mit.edu	37	19	50381712	50381712	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCK	93627	broad.mit.edu	37	4	107115860	107115860	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBPL1	9519	broad.mit.edu	37	6	134301367	134301367	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB1	6921	broad.mit.edu	37	8	74859150	74859150	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114724519	114724519	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF7L2	6934	broad.mit.edu	37	10	114724522	114724522	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120983879	120983879	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120996407	120996407	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20871902	20871902	+	Missense_Mutation	SNP	G	A	A	rs141943004		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56665210	56665210	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2B	7021	broad.mit.edu	37	6	50791266	50791266	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93516687	93516687	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFPI2	7980	broad.mit.edu	37	7	93518455	93518459	+	Frame_Shift_Del	DEL	TTAGA	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43585737	43585737	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134030139	134030139	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169648614	169648614	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS3	7059	broad.mit.edu	37	1	155167905	155167905	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122771948	122771948	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32513557	32513557	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43772926	43772926	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394464	164394465	+	Frame_Shift_Ins	INS	-	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM2D2	83877	broad.mit.edu	37	8	38851201	38851201	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO2	127391	broad.mit.edu	37	1	40717240	40717240	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	129563213	129563213	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132D	121256	broad.mit.edu	37	12	130184388	130184388	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132E	124842	broad.mit.edu	37	17	32963144	32963144	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130762639	130762639	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74300878	74300878	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8C	389827	broad.mit.edu	37	9	136384217	136384217	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68795710	68795710	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB15A	11013	broad.mit.edu	37	X	101769792	101769792	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB15B	286527	broad.mit.edu	37	X	103216431	103216431	+	5'Flank	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNF	7124	broad.mit.edu	37	6	31543733	31543733	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9584131	9584131	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT2	7139	broad.mit.edu	37	1	201337151	201337151	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175049402	175049402	+	Nonsense_Mutation	SNP	C	A	A	rs34902018		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175067610	175067611	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218675013	218675013	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOPBP1	11073	broad.mit.edu	37	3	133371470	133371470	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577124	7577124	+	Missense_Mutation	SNP	C	T	T	rs121912657		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1439923	1439923	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10914577	10914577	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10920046	10920046	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10922029	10922029	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72680536	72680536	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55033171	55033171	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM54	57159	broad.mit.edu	37	2	27522076	27522076	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72987515	72987515	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45819245	45819245	+	Missense_Mutation	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45821482	45821482	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116426509	116426509	+	Frame_Shift_Del	DEL	G	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL2	64061	broad.mit.edu	37	X	53114342	53114342	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21A	199223	broad.mit.edu	37	3	39171651	39171651	+	Intron	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL12	23170	broad.mit.edu	37	22	43565474	43565474	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179401683	179401683	+	Frame_Shift_Del	DEL	T	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179433110	179433110	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179583250	179583250	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179587299	179587299	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH1	57348	broad.mit.edu	37	19	54947401	54947401	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	93853	93853	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41857260	41857260	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43857596	43857596	+	Splice_Site	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2A	7319	broad.mit.edu	37	X	118708874	118708874	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2G1	7326	broad.mit.edu	37	17	4204760	4204760	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2M	9040	broad.mit.edu	37	19	59068421	59068421	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2NL	389898	broad.mit.edu	37	X	142967583	142967583	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156962929	156962929	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156974295	156974295	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A3	79799	broad.mit.edu	37	4	69811094	69811094	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70070452	70070452	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70078208	70078208	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70152426	70152426	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULBP2	80328	broad.mit.edu	37	6	150267592	150267592	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96137361	96137361	+	Silent	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNG	7374	broad.mit.edu	37	12	109539648	109539648	+	Intron	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215847564	215847564	+	Missense_Mutation	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216262461	216262461	+	Silent	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP11	8237	broad.mit.edu	37	X	47092493	47092494	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP26	83844	broad.mit.edu	37	X	132160099	132160099	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61431428	61431428	+	Missense_Mutation	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61455909	61455909	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP38	84640	broad.mit.edu	37	4	144117059	144117059	+	Intron	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41088907	41088907	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129040222	129040222	+	Intron	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129055587	129055587	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129063440	129063440	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446726	107446726	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43063022	43063022	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54172876	54172876	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18218785	18218785	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43543524	43543524	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48973417	48973417	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49455915	49455915	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51483373	51483373	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71567440	71567440	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38422915	38422915	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38472825	38472825	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43964945	43964945	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	56774089	56774089	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80704364	80704364	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111605016	111605016	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	25591809	25591809	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55015150	55015150	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59104101	59104101	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65533464	65533464	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	67841408	67841408	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91924656	91924656	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443767	19443767	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19475561	19475561	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137149	20137149	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39200072	39200072	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43769859	43769859	+	IGR	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45334860	45334860	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57445688	57445688	+	IGR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59261499	59261499	+	IGR	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20359071	20359071	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78196573	78196573	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79026054	79026054	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32489631	32489631	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33366925	33366925	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33527900	33527900	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605488	33605488	+	IGR	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33816162	33816162	+	IGR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48531696	48531696	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	15673745	15673745	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	18353958	18353958	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20679285	20679285	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25985746	25985746	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53628832	53628832	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60319014	60319014	+	IGR	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60320383	60320383	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15722527	15722527	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16101028	16101028	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22321791	22321791	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22654008	22654008	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22869467	22869467	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23675000	23675000	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24015508	24015508	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	50223279	50223279	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104469795	104469795	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121244823	121244823	+	IGR	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903702	148903702	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158146253	158146253	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158694205	158694205	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	194158676	194158676	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	38546500	38546500	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	67743959	67743959	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10899039	10899039	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11114608	11114608	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14721495	14721495	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21797858	21797858	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	31859468	31859468	+	IGR	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32434605	32434605	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17395125	17395125	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383658	132383658	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132844988	132844988	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132890579	132890579	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13555081	13555081	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140426344	140426344	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140426405	140426405	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162359384	162359384	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570318	168570318	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	192745938	192745939	+	IGR	DNP	GG	TT	TT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	207027684	207027684	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	212163621	212163621	+	IGR	SNP	A	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26373342	26373342	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	43054518	43054518	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	6636483	6636483	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81428090	81428090	+	IGR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83084468	83084468	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872748	91872748	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	31223497	31223497	+	IGR	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11373660	11373660	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117017517	117017517	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130057091	130057091	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135967379	135967379	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	170712594	170712594	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	188891987	188891987	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43390370	43390370	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297714	65297714	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69416547	69416547	+	IGR	SNP	A	G	G	rs147227030		TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69863225	69863225	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	83322759	83322759	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9386057	9386057	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75375469	75375469	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	79584487	79584487	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92603860	92603860	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	167342887	167342887	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50139149	50139149	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72294956	72294956	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98627528	98627528	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99622824	99622824	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143774975	143774975	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27064483	27064483	+	IGR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38695096	38695096	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57005092	57005092	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217556	57217556	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268511	57268511	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63020735	63020735	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	68106512	68106512	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	75758093	75758093	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	82286647	82286647	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106209158	106209158	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115330731	115330731	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	13880515	13880515	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94861743	94861743	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	105279442	105279442	+	IGR	SNP	T	A	A	rs117272265	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	141030058	141030058	+	IGR	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27609394	27609394	+	IGR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36003375	36003375	+	IGR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	37636996	37636996	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44174762	44174762	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76264491	76264492	+	IGR	DNP	GG	TT	TT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100165936	100165936	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115239181	115239181	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	122251091	122251091	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134599188	134599188	+	IGR	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134744360	134744360	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134744455	134744455	+	IGR	DEL	G	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134808624	134808624	+	IGR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136742900	136742900	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743053	136743053	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140232796	140232796	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145075721	145075721	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	152870589	152870589	+	IGR	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155058755	155058755	+	IGR	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27537481	27537481	+	IGR	DEL	G	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43888904	43888904	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45842970	45842970	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46147804	46147804	+	IGR	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48024212	48024212	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	56231327	56231327	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64628278	64628278	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65717890	65717890	+	IGR	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65718514	65718514	+	IGR	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74547591	74547591	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74960911	74960911	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74964876	74964876	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79817457	79817457	+	IGR	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	83004999	83004999	+	IGR	SNP	G	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92542840	92542840	+	IGR	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	97644719	97644719	+	IGR	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13463278	13463278	+	IGR	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136650887	136650887	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN1	8876	broad.mit.edu	37	6	133014272	133014272	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100168776	100168776	+	Splice_Site	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12422933	12422933	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134104877	134104877	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS33A	65082	broad.mit.edu	37	12	122724487	122724487	+	Missense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22132701	22132701	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6131343	6131343	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42336238	42336238	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71130631	71130631	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177063217	177063217	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR34	89891	broad.mit.edu	37	9	131397359	131397359	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118484427	118484427	+	Missense_Mutation	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIBG	84305	broad.mit.edu	37	12	56295911	56295911	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP2	8839	broad.mit.edu	37	20	43355732	43355732	+	Silent	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32413740	32413740	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32449979	32449979	+	Intron	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78312491	78312491	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31625983	31625983	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR5	389610	broad.mit.edu	37	8	6682573	6682573	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF6	286451	broad.mit.edu	37	X	67738453	67738453	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDF3	253943	broad.mit.edu	37	8	64098882	64098882	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBED1	9189	broad.mit.edu	37	X	2407837	2407838	+	Frame_Shift_Ins	INS	-	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB33	10009	broad.mit.edu	37	X	119389209	119389209	+	Nonsense_Mutation	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698205	111698205	+	Silent	SNP	A	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW2	152098	broad.mit.edu	37	3	28489194	28489194	+	Intron	SNP	A	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC3	51304	broad.mit.edu	37	3	44968472	44968472	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72051003	72051003	+	Missense_Mutation	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72992181	72992181	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77616460	77616460	+	Missense_Mutation	SNP	C	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766151	77766163	+	Frame_Shift_Del	DEL	AAAAAGCAGTGTT	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77776343	77776343	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC2	7546	broad.mit.edu	37	13	100637985	100637985	+	3'UTR	DEL	C	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIK1	284307	broad.mit.edu	37	19	58099970	58099970	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM3	9203	broad.mit.edu	37	X	70470376	70470376	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF20	7568	broad.mit.edu	37	19	12243489	12243490	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74627621	74627621	+	Missense_Mutation	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49557649	49557649	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF454	285676	broad.mit.edu	37	5	178392950	178392950	+	Silent	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57187552	57187552	+	Nonsense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57193642	57193642	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF510	22869	broad.mit.edu	37	9	99521205	99521205	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF524	147807	broad.mit.edu	37	19	56114165	56114165	+	Silent	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF675	171392	broad.mit.edu	37	19	23844856	23844856	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84525804	84525804	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185803037	185803037	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF8	7554	broad.mit.edu	37	19	58806844	58806844	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP1	22917	broad.mit.edu	37	11	60640699	60640699	+	Missense_Mutation	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238048734	238048734	+	Missense_Mutation	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58557190	58557191	+	Intron	INS	-	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	134626371	134626371	+	Missense_Mutation	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22363272	22363272	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22694669	22694669	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142799588	142799588	+	Intron	SNP	T	C	C			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142803676	142803676	+	Intron	SNP	T	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143189340	143189340	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143213161	143213161	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	179557770	179557771	+	5'Flank	DNP	CC	AT	AT			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186689239	186689239	+	Intron	DEL	T	-	-			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89185202	89185202	+	Intron	SNP	G	T	T	rs139109242	by1000genomes	TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89291861	89291861	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89339910	89339910	+	RNA	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89442501	89442501	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90060948	90060948	+	Intron	SNP	G	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142045608	142045608	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142223821	142223821	+	Intron	SNP	C	T	T			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142364503	142364503	+	Intron	SNP	G	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86568063	86568063	+	5'Flank	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38577895	38577895	+	5'Flank	SNP	T	G	G			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	103183006	103183006	+	Intron	SNP	C	A	A			TCGA-50-6594-01A-11D-1753-08	TCGA-50-6594-11A-01D-1753-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
