Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
HIVEP3	59269	broad.mit.edu	36	1	41822050	41822050	+	Nonsense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	41822050	41822050	HIVEP3	1	C	C	A	31
CCAR1	55749	broad.mit.edu	36	10	70185224	70185224	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70185224	70185224	CCAR1	10	C	C	A	22
PYGM	5837	broad.mit.edu	36	11	64277171	64277171	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	64277171	64277171	PYGM	11	G	G	A	37
CPT1A	1374	broad.mit.edu	36	11	68309007	68309007	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	68309007	68309007	CPT1A	11	G	G	A	37
ATN1	1822	broad.mit.edu	36	12	6915115	6915115	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6915115	6915115	ATN1	12	G	G	A	41
KL	9365	broad.mit.edu	36	13	32533040	32533040	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	32533040	32533040	KL	13	G	G	C	36
UGGT2	55757	broad.mit.edu	36	13	95334927	95334927	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	95334927	95334927	UGGT2	13	C	C	T	19
PIGH	5283	broad.mit.edu	36	14	67130374	67130374	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	67130374	67130374	PIGH	14	G	G	A	34
ZFYVE26	23503	broad.mit.edu	36	14	67344228	67344228	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	67344228	67344228	ZFYVE26	14	G	G	C	34
EIF2B2	8892	broad.mit.edu	36	14	74545605	74545605	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	74545605	74545605	EIF2B2	14	G	G	A	45
SCNN1G	6340	broad.mit.edu	36	16	23116230	23116230	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	23116230	23116230	SCNN1G	16	C	C	A	18
MAZ	4150	broad.mit.edu	36	16	29728362	29728362	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29728362	29728362	MAZ	16	G	G	C	42
TP53	7157	broad.mit.edu	36	17	7517577	7517577	+	Splice_Site_SNP	SNP	C	C	A	rs11575997	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Splice_Site_SNP	SNP	7517577	7517577	TP53	17	C	C	A	18
RDM1	201299	broad.mit.edu	36	17	31275861	31275861	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	31275861	31275861	RDM1	17	C	C	A	24
LMNB2	84823	broad.mit.edu	36	19	2383480	2383480	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	2383480	2383480	LMNB2	19	C	C	T	21
CALR	811	broad.mit.edu	36	19	12912239	12912239	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	12912239	12912239	CALR	19	C	C	T	31
LILRA6	79168	broad.mit.edu	36	19	59436170	59436170	+	Nonsense_Mutation	SNP	A	A	C	rs1052992	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	59436170	59436170	LILRA6	19	A	A	C	4
EIF2AK2	5610	broad.mit.edu	36	2	37195473	37195473	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37195473	37195473	EIF2AK2	2	C	C	T	20
VARS2	57176	broad.mit.edu	36	6	30998902	30998902	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30998902	30998902	VARS2	6	G	G	A	37
RIMS1	22999	broad.mit.edu	36	6	73100052	73100052	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73100052	73100052	RIMS1	6	C	C	T	19
EPDR1	54749	broad.mit.edu	36	7	37926825	37926826	+	Missense_Mutation	DNP	CA	CA	AT	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	37926825	37926826	EPDR1	7	CA	CA	AT	21
CSMD3	114788	broad.mit.edu	36	8	113383345	113383345	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	113383345	113383345	CSMD3	8	G	G	T	44
TSNARE1	203062	broad.mit.edu	36	8	143423241	143423241	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	143423241	143423241	TSNARE1	8	C	C	T	27
CYP11B1	1584	broad.mit.edu	36	8	143953509	143953509	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	143953509	143953509	CYP11B1	8	G	G	C	38
KDM4C	23081	broad.mit.edu	36	9	7159927	7159927	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7159927	7159927	KDM4C	9	G	G	C	36
ARHGEF9	23229	broad.mit.edu	36	X	62815099	62815099	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	62815099	62815099	ARHGEF9	23	C	C	T	30
MED15	51586	broad.mit.edu	36	22	19250813	19250814	+	In_Frame_Ins	INS	-	CAG	-	novel	Unknown	TCGA-59-2355-01	TCGA-59-2355-10							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Ins	INS	19250813	19250814	MED15	22	-	CAG	-	2
