Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52580456	52580456	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7102111	7102111	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67145072	67145072	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66986908	66986908	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87160537	87160537	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48201304	48201304	+	Intron	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48145573	48145573	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109609686	109609686	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109680290	109680290	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109680382	109680382	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER3	55331	broad.mit.edu	37	11	76709875	76709875	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL3	2181	broad.mit.edu	37	2	223785894	223785894	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20481152	20481152	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL9	284382	broad.mit.edu	37	19	8808576	8808576	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236889100	236889100	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD2	161931	broad.mit.edu	37	16	84230345	84230345	+	Missense_Mutation	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156915298	156915298	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106746458	106746458	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106787292	106787292	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106805146	106805146	+	RNA	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106877492	106877493	+	Intron	DNP	CC	AA	AA			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33535096	33535096	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33535098	33535098	+	Splice_Site	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33616225	33616225	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178579270	178579270	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73154387	73154387	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18776906	18776906	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84373230	84373230	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAP1	11033	broad.mit.edu	37	7	943704	943705	+	Intron	DNP	CC	AA	AA			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7690790	7690790	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1C	126	broad.mit.edu	37	4	100268269	100268269	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AEBP1	165	broad.mit.edu	37	7	44148746	44148746	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1	60312	broad.mit.edu	37	4	7857150	7857150	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF4	27125	broad.mit.edu	37	5	132235414	132235414	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFMID	125061	broad.mit.edu	37	17	76198623	76198623	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236649676	236649677	+	Frame_Shift_Ins	INS	-	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150839674	150839674	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	981168	981168	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	986125	986125	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88292465	88292465	+	Nonsense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32878141	32878141	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62293785	62293785	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186333533	186333533	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77806104	77806104	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP10	11216	broad.mit.edu	37	17	19861631	19861631	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86236676	86236676	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP3	10566	broad.mit.edu	37	12	4736526	4736526	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33015489	33015489	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKNA	80709	broad.mit.edu	37	9	117118346	117118346	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125833592	125833592	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73827957	73827957	+	Missense_Mutation	SNP	G	T	T	rs61741524		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56247074	56247074	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CL	259173	broad.mit.edu	37	3	46719712	46719712	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR11	151254	broad.mit.edu	37	2	202352544	202352544	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61965482	61965482	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFY1	51479	broad.mit.edu	37	17	4126558	4126558	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14712990	14712990	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92678728	92678728	+	Missense_Mutation	SNP	G	T	T	rs142354133		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95481152	95481152	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37451731	37451731	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37454033	37454033	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37506811	37506811	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14779955	14779956	+	Intron	INS	-	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKZF1	55139	broad.mit.edu	37	2	220098104	220098104	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26682071	26682071	+	3'UTR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA2P3	305	broad.mit.edu	37	10	66586113	66586113	+	RNA	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201473757	201473757	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4E1	23431	broad.mit.edu	37	15	51201079	51201079	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
API5	8539	broad.mit.edu	37	11	43348161	43348161	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21229598	21229598	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27354853	27354853	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7P1	375719	broad.mit.edu	37	9	67281793	67281793	+	RNA	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115361800	115361800	+	Silent	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF1	10565	broad.mit.edu	37	8	68111060	68111060	+	3'UTR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGEF2	10564	broad.mit.edu	37	20	47607618	47607618	+	Silent	SNP	C	T	T	rs146960510		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	68962337	68962337	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11682515	11682515	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF3	50650	broad.mit.edu	37	3	56779265	56779265	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34622213	34622213	+	Intron	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL4A	10124	broad.mit.edu	37	7	12728635	12728635	+	3'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35763114	35763114	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC4	91947	broad.mit.edu	37	15	98509171	98509172	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART1	417	broad.mit.edu	37	11	3685429	3685429	+	3'UTR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART3	419	broad.mit.edu	37	4	77020177	77020177	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB13	79754	broad.mit.edu	37	10	5693045	5693045	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101214441	101214441	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASL	435	broad.mit.edu	37	7	65557514	65557514	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197065223	197065223	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119487964	119487964	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119583094	119583095	+	Intron	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976615	119976615	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31324221	31324221	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124408447	124408447	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7	11016	broad.mit.edu	37	12	53925481	53925481	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG3	64422	broad.mit.edu	37	3	112267530	112267530	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG4D	84971	broad.mit.edu	37	19	10657598	10657598	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATIC	471	broad.mit.edu	37	2	216213880	216213880	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108137952	108137952	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119504770	119504770	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5F1	515	broad.mit.edu	37	1	111997056	111997056	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0A4	50617	broad.mit.edu	37	7	138424421	138424421	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50226373	50226373	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50310572	50310572	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117704162	117704162	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7	6314	broad.mit.edu	37	3	63938021	63938021	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GNTL1	146712	broad.mit.edu	37	17	81005899	81005902	+	Intron	DEL	TCTC	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32222212	32222212	+	Nonsense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70049223	70049223	+	Splice_Site	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31599147	31599147	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72912698	72912698	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCMO1	53630	broad.mit.edu	37	16	81303679	81303679	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32836633	32836633	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLM	641	broad.mit.edu	37	15	91303719	91303719	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79800082	79800082	+	Intron	DEL	A	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55758795	55758795	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13601770	13601770	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50192297	50192297	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD7	29117	broad.mit.edu	37	16	50354564	50354564	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRE	9577	broad.mit.edu	37	2	28521328	28521329	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1464734	1464734	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79936987	79936987	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSX	390259	broad.mit.edu	37	11	122850161	122850161	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN1A1	696	broad.mit.edu	37	6	26508570	26508570	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf137	26098	broad.mit.edu	37	10	127441455	127441455	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf27	219793	broad.mit.edu	37	10	72539529	72539529	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105901940	105901940	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33573608	33573608	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf52	91894	broad.mit.edu	37	11	111796798	111796798	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112622286	112622286	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100332676	100332676	+	RNA	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf52	388115	broad.mit.edu	37	15	40629890	40629890	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf78	123970	broad.mit.edu	37	16	49407822	49407822	+	5'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30903460	30903461	+	Missense_Mutation	DNP	GG	TT	TT	rs142817345		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf45	85019	broad.mit.edu	37	18	20953625	20953625	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf28	126321	broad.mit.edu	37	19	3551130	3551130	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf51	352909	broad.mit.edu	37	19	55671298	55671298	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf103	55791	broad.mit.edu	37	1	111495357	111495357	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf105	92346	broad.mit.edu	37	1	172425554	172425555	+	Splice_Site	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf116	79098	broad.mit.edu	37	1	207195647	207195647	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf141	400757	broad.mit.edu	37	1	67591382	67591382	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf161	126868	broad.mit.edu	37	1	116670876	116670876	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75055605	75055605	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75055645	75055645	+	Nonsense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75065281	75065282	+	Intron	INS	-	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf56	54964	broad.mit.edu	37	1	151022894	151022897	+	Intron	DEL	TATT	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60538214	60538214	+	Silent	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf152	140894	broad.mit.edu	37	20	34596256	34596256	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf28	51493	broad.mit.edu	37	22	32804073	32804073	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf21	152002	broad.mit.edu	37	3	194991426	194991426	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf59	151963	broad.mit.edu	37	3	192516397	192516397	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf72	401089	broad.mit.edu	37	3	138668510	138668510	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113541332	113541332	+	Missense_Mutation	SNP	A	T	T	rs143057821		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf27	54969	broad.mit.edu	37	4	170671526	170671526	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37211527	37211527	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf15	29113	broad.mit.edu	37	6	31079369	31079369	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf168	84553	broad.mit.edu	37	6	99729024	99729024	+	3'UTR	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf52	375607	broad.mit.edu	37	7	100815324	100815324	+	3'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf59	389541	broad.mit.edu	37	7	99746545	99746545	+	Translation_Start_Site	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf119	375757	broad.mit.edu	37	9	131050816	131050816	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13363949	13363949	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140938207	140938207	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2714818	2714818	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2794913	2794913	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181765960	181765960	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40055719	40055719	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201046958	201046958	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81595047	81595047	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54596898	54596898	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1994018	1994018	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1994339	1994339	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	2017307	2017307	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18550971	18550971	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG8	59283	broad.mit.edu	37	19	54485474	54485474	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134644834	134644834	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKV	79012	broad.mit.edu	37	3	49896879	49896879	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPG	822	broad.mit.edu	37	2	85628374	85628374	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN1	4076	broad.mit.edu	37	11	34097814	34097814	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD6	84674	broad.mit.edu	37	5	40853331	40853331	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC4	113201	broad.mit.edu	37	15	44630106	44630106	+	Splice_Site	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43927665	43927665	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAV1	857	broad.mit.edu	37	7	116166561	116166561	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219875446	219875446	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC127	133957	broad.mit.edu	37	5	205950	205950	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119926744	119926744	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85593700	85593700	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66359007	66359007	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNE1	898	broad.mit.edu	37	19	30303976	30303976	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR2	729230	broad.mit.edu	37	3	46399269	46399269	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD109	135228	broad.mit.edu	37	6	74490336	74490336	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1B	910	broad.mit.edu	37	1	158301238	158301238	+	5'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158152741	158152741	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325743	158325743	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1	131450	broad.mit.edu	37	3	112647858	112647858	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135738412	135738412	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD6	923	broad.mit.edu	37	11	60776153	60776153	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC37L1	55664	broad.mit.edu	37	9	4706108	4706109	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193218922	193218922	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24487754	24487754	+	3'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24509645	24509645	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95188636	95188636	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73572631	73572631	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63530152	63530152	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26881757	26881757	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX4	1046	broad.mit.edu	37	X	72667443	72667443	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF3	11189	broad.mit.edu	37	1	151680397	151680397	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR2	1952	broad.mit.edu	37	1	109813107	109813107	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEL	1056	broad.mit.edu	37	9	135946252	135946252	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPH	64946	broad.mit.edu	37	5	68491617	68491617	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES3	23491	broad.mit.edu	37	16	67006076	67006076	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETP	1071	broad.mit.edu	37	16	57007458	57007458	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR4	10877	broad.mit.edu	37	1	196887425	196887425	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1L	9557	broad.mit.edu	37	1	146724412	146724412	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHEK2	11200	broad.mit.edu	37	22	29121263	29121263	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85233835	85233835	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29539446	29539446	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHORDC1	26973	broad.mit.edu	37	11	89944475	89944475	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136623213	136623213	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHUK	1147	broad.mit.edu	37	10	101978830	101978830	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87029474	87029474	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12A	160364	broad.mit.edu	37	12	10124339	10124339	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4A	50856	broad.mit.edu	37	12	8291015	8291015	+	3'UTR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71046978	71046978	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP4	79745	broad.mit.edu	37	2	29344477	29344477	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62212569	62212569	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62366900	62366900	+	Intron	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79032837	79032837	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58582519	58582519	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146471307	146471307	+	Intron	SNP	C	G	G	rs116479521	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39178481	39178481	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51287625	51287625	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103440391	103440391	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103491353	103491353	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103491782	103491782	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103548452	103548452	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75848160	75848160	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75865853	75865853	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121228707	121228707	+	Missense_Mutation	SNP	C	G	G	rs150549316		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101748161	101748161	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL18A1	80781	broad.mit.edu	37	21	46912666	46912666	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70859702	70859702	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94052404	94052404	+	Missense_Mutation	SNP	G	A	A	rs72658196		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139788254	139788254	+	Splice_Site	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139833736	139833736	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117063930	117063930	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137697099	137697099	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238280799	238280799	+	Missense_Mutation	SNP	G	C	C	rs113247852		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3690910	3690910	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3690925	3690925	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS7B	64708	broad.mit.edu	37	2	232656416	232656416	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	69018107	69018107	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA4	51200	broad.mit.edu	37	7	129946600	129946600	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131253972	131253972	+	3'UTR	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36724072	36724073	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211465353	211465353	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145634558	145634558	+	Splice_Site	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207741314	207741314	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390204	197390204	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP1	167	broad.mit.edu	37	6	49815803	49815803	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27018633	27018633	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27021632	27021632	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAD	51380	broad.mit.edu	37	12	53567073	53567073	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1419441	1419441	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3265713	3265713	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34038154	34038154	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113249654	113249654	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113299337	113299337	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113347651	113347651	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113668326	113668326	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN2	1447	broad.mit.edu	37	4	70823408	70823408	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2BP	57325	broad.mit.edu	37	20	18143374	18143374	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56094399	56094399	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732245	11732245	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSE	1510	broad.mit.edu	37	1	206331183	206331183	+	Nonstop_Mutation	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117432001	117432001	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTN	2017	broad.mit.edu	37	11	70267698	70267698	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX2	23316	broad.mit.edu	37	12	111785649	111785649	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP3	440224	broad.mit.edu	37	18	14478730	14478730	+	RNA	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36118072	36118072	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41386406	41386406	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135352302	135352302	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
D2HGDH	728294	broad.mit.edu	37	2	242707130	242707130	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72204890	72204890	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72278761	72278761	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90255686	90255686	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	121976387	121976387	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4	10926	broad.mit.edu	37	7	87530130	87530130	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4	10926	broad.mit.edu	37	7	87537065	87537065	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF11	80344	broad.mit.edu	37	14	24592341	24592341	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L2	340578	broad.mit.edu	37	X	125299759	125299759	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2	51473	broad.mit.edu	37	6	24205410	24205410	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK1	9201	broad.mit.edu	37	13	36385037	36385037	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61077401	61077401	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50605626	50605626	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50605628	50605628	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31237150	31237150	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134655006	134655006	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134709151	134709151	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176940637	176940637	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEF8	54849	broad.mit.edu	37	16	90032312	90032312	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137263069	137263069	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGUOK	1716	broad.mit.edu	37	2	74166144	74166145	+	Frame_Shift_Ins	INS	-	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKKL1	27120	broad.mit.edu	37	19	49877992	49877992	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84732498	84732498	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP3	58512	broad.mit.edu	37	1	35334650	35334650	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRTB1	63948	broad.mit.edu	37	1	53930518	53930518	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21730382	21730382	+	Splice_Site	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196673303	196673303	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196892823	196892823	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11713435	11713435	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72283023	72283024	+	Intron	DNP	CT	AG	AG			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183584886	183584886	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5B	85479	broad.mit.edu	37	8	66992626	66992626	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L2	1775	broad.mit.edu	37	16	2288443	2288443	+	3'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L3	1776	broad.mit.edu	37	3	58186559	58186559	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31388040	31388040	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98087045	98087045	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225761065	225761065	+	Silent	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169097693	169097693	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169139279	169139279	+	Intron	SNP	G	T	T	rs77856207	byFrequency;by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169505955	169505955	+	Intron	DEL	A	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25266492	25266492	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPT	1805	broad.mit.edu	37	1	168683705	168683705	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS3L	56931	broad.mit.edu	37	19	5788169	5788169	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL3	1857	broad.mit.edu	37	3	183888495	183888495	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44036927	44036927	+	3'UTR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137822452	137822452	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96241928	96241928	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131666055	131666055	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131757298	131757298	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22285173	22285173	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44107437	44107437	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC1	114327	broad.mit.edu	37	6	52343958	52343958	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK4	440275	broad.mit.edu	37	15	40265983	40265983	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120802195	120802195	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120816388	120816388	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4E	1977	broad.mit.edu	37	4	99808424	99808424	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL2	54898	broad.mit.edu	37	6	10995395	10995395	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80629067	80629067	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA4	2043	broad.mit.edu	37	2	222298988	222298988	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134884997	134884997	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHX2	2053	broad.mit.edu	37	8	27364421	27364421	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37865605	37865605	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1399138	1399138	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14028027	14028027	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETFA	2108	broad.mit.edu	37	15	76552795	76552795	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5567107	5567107	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EWSR1	2130	broad.mit.edu	37	22	29664192	29664192	+	5'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133827162	133827162	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6318847	6318847	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F7	2155	broad.mit.edu	37	13	113773184	113773184	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM120A	23196	broad.mit.edu	37	9	96259736	96259737	+	Intron	INS	-	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM128A	653784	broad.mit.edu	37	2	132241761	132241761	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131B	9715	broad.mit.edu	37	7	143054044	143054044	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM131B	9715	broad.mit.edu	37	7	143057165	143057165	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71195938	71195938	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6244992	6244992	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74134644	74134644	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47B	170062	broad.mit.edu	37	X	34962075	34962075	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM58B	339521	broad.mit.edu	37	1	200183036	200183036	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190130039	190130039	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156590160	156590160	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A3	727830	broad.mit.edu	37	9	40702629	40702629	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83D	81610	broad.mit.edu	37	20	37576623	37576623	+	Silent	SNP	C	G	G	rs77993973	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASLG	356	broad.mit.edu	37	1	172629329	172629329	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187509957	187509957	+	Missense_Mutation	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187510319	187510319	+	Missense_Mutation	SNP	T	A	A	rs34174591	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13669494	13669494	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127607681	127607681	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAMR	83953	broad.mit.edu	37	1	207143335	207143335	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137804534	137804534	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157488210	157488210	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108203468	108203468	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108436279	108436279	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FES	2242	broad.mit.edu	37	15	91432679	91432679	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102527578	102527578	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38274924	38274924	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123274543	123274543	+	Intron	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155530683	155530683	+	Intron	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27949654	27949654	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34191968	34191968	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279988	152279988	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21904155	21904155	+	RNA	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89100646	89100646	+	RNA	DEL	A	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58138445	58138445	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28891598	28891598	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR3	2352	broad.mit.edu	37	11	71850763	71850763	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXC2	2303	broad.mit.edu	37	16	86601557	86601557	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPGT	8790	broad.mit.edu	37	1	74670277	74670277	+	Silent	SNP	G	A	A	rs139749795	byFrequency;by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39430390	39430390	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49444423	49444423	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39127993	39127993	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112025246	112025246	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD9	8326	broad.mit.edu	37	7	72849355	72849355	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29589471	29589471	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161302527	161302527	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47405585	47405585	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	27182299	27182299	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88431764	88431764	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155252566	155252566	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31135282	31135282	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT14	79623	broad.mit.edu	37	2	31165243	31165243	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT9	50614	broad.mit.edu	37	12	132688277	132688277	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL4	374378	broad.mit.edu	37	11	11348537	11348537	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDE1	51573	broad.mit.edu	37	16	19519128	19519146	+	Intron	DEL	TAAAATTGATTAAAATGTG	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD2	54857	broad.mit.edu	37	X	69646916	69646916	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT1	2673	broad.mit.edu	37	2	69577211	69577211	+	Frame_Shift_Del	DEL	T	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31015322	31015322	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42467361	42467361	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA4	2701	broad.mit.edu	37	1	35260672	35260672	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L2	89944	broad.mit.edu	37	11	134239993	134239993	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLCCI1	113263	broad.mit.edu	37	7	8062173	8062174	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLE1	2733	broad.mit.edu	37	9	131289841	131289841	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93275695	93275695	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GORAB	92344	broad.mit.edu	37	1	170521423	170521423	+	Silent	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1L1	60313	broad.mit.edu	37	1	46120390	46120390	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPCPD1	56261	broad.mit.edu	37	20	5545813	5545813	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135485469	135485469	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135485479	135485479	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134898647	134898647	+	5'Flank	SNP	G	T	T	rs116043533	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142630733	142630733	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100387999	100387999	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131487810	131487810	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR156	165829	broad.mit.edu	37	3	119905417	119905417	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR32	2854	broad.mit.edu	37	19	51274608	51274608	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR37	2861	broad.mit.edu	37	7	124404849	124404849	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR45	11250	broad.mit.edu	37	2	105858804	105858804	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR78	27201	broad.mit.edu	37	4	8584422	8584422	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87407290	87407290	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102372516	102372517	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13906583	13906583	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK6	2870	broad.mit.edu	37	5	176859226	176859226	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86415509	86415509	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRSF1	2926	broad.mit.edu	37	4	71701992	71701992	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144966344	144966344	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27499558	27499558	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1A	2978	broad.mit.edu	37	6	42145924	42145924	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14804340	14804340	+	Splice_Site	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUK1	2987	broad.mit.edu	37	1	228334711	228334711	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO1	54363	broad.mit.edu	37	20	7875951	7875951	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN1	1404	broad.mit.edu	37	5	82937482	82937482	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS1	3036	broad.mit.edu	37	19	52222568	52222568	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS8	93323	broad.mit.edu	37	19	17170921	17170921	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCRTR2	3062	broad.mit.edu	37	6	55119937	55119937	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC11	79885	broad.mit.edu	37	3	13523006	13523006	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDC	3067	broad.mit.edu	37	15	50555433	50555433	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDX	139324	broad.mit.edu	37	X	83591885	83591885	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236735619	236735619	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69716515	69716515	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HES3	390992	broad.mit.edu	37	1	6305549	6305549	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91841140	91841141	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81346723	81346723	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HINFP	25988	broad.mit.edu	37	11	119005060	119005060	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1E	3008	broad.mit.edu	37	6	26157085	26157085	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BD	3017	broad.mit.edu	37	6	26158556	26158556	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-C	3107	broad.mit.edu	37	6	31237187	31237187	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43299125	43299125	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA13	3209	broad.mit.edu	37	7	27238027	27238027	+	Nonsense_Mutation	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA6	3203	broad.mit.edu	37	7	27185361	27185361	+	Silent	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC4	3221	broad.mit.edu	37	12	54448073	54448073	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS3	84343	broad.mit.edu	37	3	148868529	148868529	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100773234	100773234	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRASLS	57110	broad.mit.edu	37	3	192988531	192988531	+	3'UTR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186395105	186395105	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119962122	119962122	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63256879	63256879	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1E	3354	broad.mit.edu	37	6	87726279	87726279	+	3'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113853842	113853842	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA3	94031	broad.mit.edu	37	4	8305882	8305882	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70841400	70841400	+	3'UTR	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70908242	70908242	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70954439	70954439	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82912470	82912470	+	Intron	DEL	A	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	158970061	158970061	+	5'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27676797	27676797	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27676840	27676840	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL13RA2	3598	broad.mit.edu	37	X	114244002	114244002	+	Intron	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RA	23765	broad.mit.edu	37	22	17578876	17578876	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4R	3566	broad.mit.edu	37	16	27356125	27356125	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35871071	35871071	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76731783	76731783	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62263129	62263129	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105208070	105208070	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234072263	234072263	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121541344	121541344	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTU	27152	broad.mit.edu	37	4	128627638	128627638	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9466809	9466809	+	3'UTR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156532439	156532439	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC3	440073	broad.mit.edu	37	12	250283	250283	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15599982	15599982	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15648243	15648243	+	Intron	DEL	C	-	-	rs2282383	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31414948	31414948	+	Missense_Mutation	SNP	C	A	A	rs144787223		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7759473	7759473	+	Intron	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7786303	7786303	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK2	3717	broad.mit.edu	37	9	5126557	5126557	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JSRP1	126306	broad.mit.edu	37	19	2255200	2255200	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124412581	124412581	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK4	163782	broad.mit.edu	37	1	62739527	62739527	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2A	2648	broad.mit.edu	37	17	40271406	40271406	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5154280	5154280	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17794029	17794029	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17794031	17794031	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNE4	23704	broad.mit.edu	37	2	223917913	223917913	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78846232	78846232	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36793073	36793073	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53240964	53240964	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55976632	55976632	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0368	23392	broad.mit.edu	37	9	114156013	114156013	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0427	9811	broad.mit.edu	37	18	46284908	46284908	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42142415	42142415	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0748	9840	broad.mit.edu	37	12	55367375	55367375	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123246320	123246320	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1199	57214	broad.mit.edu	37	15	81188358	81188358	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86537030	86537030	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86568131	86568131	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1887107	1887107	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36846581	36846581	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1984	84960	broad.mit.edu	37	9	139697734	139697735	+	Intron	INS	-	G	G	rs2784099		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241712631	241712631	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51900573	51900573	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55251995	55251995	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55263202	55263202	+	Nonsense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL3	84623	broad.mit.edu	37	11	126305136	126305136	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF11	8462	broad.mit.edu	37	2	10192638	10192638	+	3'UTR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30322057	30322057	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL17	339451	broad.mit.edu	37	1	898278	898278	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLKB1	3818	broad.mit.edu	37	4	187179225	187179225	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRA1	10748	broad.mit.edu	37	12	10746640	10746640	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRAQ1	129285	broad.mit.edu	37	2	48688331	48688331	+	Silent	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	A	A	rs121913240		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53071971	53071971	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT23	25984	broad.mit.edu	37	17	39092632	39092632	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52841367	52841367	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53169437	53169437	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-5	83895	broad.mit.edu	37	17	39183145	39183145	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP12-1	353332	broad.mit.edu	37	21	46102028	46102028	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651688	1651688	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6961967	6961967	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129250249	129250249	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129468000	129468000	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107696229	107696229	+	Silent	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154173579	154173579	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1	23367	broad.mit.edu	37	5	154182849	154182849	+	Splice_Site	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS2	26524	broad.mit.edu	37	13	21549289	21549289	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBXCOR1	390598	broad.mit.edu	37	15	68119376	68119376	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46726995	46726995	+	Frame_Shift_Del	DEL	T	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88469826	88469826	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHD	197257	broad.mit.edu	37	16	75149562	75149562	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LELP1	149018	broad.mit.edu	37	1	153177371	153177371	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66102113	66102113	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66102442	66102442	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS2	3957	broad.mit.edu	37	22	37966684	37966684	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI1	9211	broad.mit.edu	37	10	95557473	95557473	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGTN	1939	broad.mit.edu	37	1	206772647	206772647	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54760174	54760174	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBR1	64327	broad.mit.edu	37	7	156549004	156549004	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76378697	76378697	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100130331	100130331	broad.mit.edu	37	1	238054007	238054007	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150776	150776	broad.mit.edu	37	2	132276832	132276832	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19412132	19412132	+	RNA	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19444773	19444773	+	RNA	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132202039	132202039	+	5'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC550112	550112	broad.mit.edu	37	4	68905106	68905106	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650368	650368	broad.mit.edu	37	11	3424847	3424847	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22298280	22298280	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22749788	22749788	+	RNA	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23090224	23090224	+	RNA	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR6	10161	broad.mit.edu	37	13	48986493	48986494	+	Nonsense_Mutation	DNP	TG	AT	AT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160998325	160998325	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56343529	56343529	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40399866	40399866	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356124	42356124	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42360350	42360350	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133881855	133881855	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105503136	105503136	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	140995809	140995809	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141253099	141253100	+	Intron	DNP	TG	CT	CT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141458109	141458109	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC49	54839	broad.mit.edu	37	15	71151289	71151289	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC50	123872	broad.mit.edu	37	16	84193481	84193481	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52869343	52869343	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92169639	92169639	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP2	9209	broad.mit.edu	37	3	37151106	37151106	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40634190	40634190	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP1	7798	broad.mit.edu	37	1	23418280	23418280	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24750854	24750854	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160697335	160697335	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160735741	160735741	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYNX1	66004	broad.mit.edu	37	8	143851159	143851159	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD6B	130576	broad.mit.edu	37	2	150069541	150069541	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235902286	235902286	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2108973	2108973	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166962085	166962085	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23889461	23889461	+	Silent	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65438897	65438897	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19416298	19416298	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D2	256714	broad.mit.edu	37	X	20043601	20043601	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKAPK3	7867	broad.mit.edu	37	3	50679165	50679165	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44055855	44055855	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16177991	16177991	+	Splice_Site	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119726804	119726804	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK4	57787	broad.mit.edu	37	19	45775014	45775014	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18255441	18255441	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3789352	3789352	+	5'Flank	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN1	4146	broad.mit.edu	37	1	31191569	31191569	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13825668	13825668	+	5'Flank	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112384759	112384759	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCFD2	90411	broad.mit.edu	37	2	47136246	47136246	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100368793	100368793	+	3'UTR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136627682	136627682	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47670205	47670205	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90362924	90362924	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS3	56917	broad.mit.edu	37	19	47912597	47912597	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD7	84179	broad.mit.edu	37	4	680325	680325	+	Missense_Mutation	SNP	G	A	A	rs139449222		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74936290	74936290	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42003574	42003574	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIIP	60672	broad.mit.edu	37	1	12089915	12089915	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1283-2	100302205	broad.mit.edu	37	19	54260092	54260092	+	5'Flank	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR548I2	100302277	broad.mit.edu	37	4	9557832	9557832	+	RNA	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR548P	100302288	broad.mit.edu	37	5	100152246	100152246	+	RNA	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIRLET7A2	406882	broad.mit.edu	37	11	122017300	122017300	+	RNA	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23812161	23812161	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118350864	118350864	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118390412	118390412	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMD	23531	broad.mit.edu	37	17	53471758	53471758	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP13	4322	broad.mit.edu	37	11	102819653	102819653	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN2	79812	broad.mit.edu	37	10	88702973	88702973	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56358133	56358133	+	5'UTR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP3	4356	broad.mit.edu	37	17	41909256	41909256	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRF	116535	broad.mit.edu	37	11	68773568	68773568	+	Silent	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS31	10240	broad.mit.edu	37	13	41345263	41345263	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A2	2206	broad.mit.edu	37	11	59857214	59857214	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1M	4499	broad.mit.edu	37	16	56667480	56667480	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121457858	121457858	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTCH2	23788	broad.mit.edu	37	11	47653336	47653336	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTCH2	23788	broad.mit.edu	37	11	47653338	47653338	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR12	54545	broad.mit.edu	37	5	32235275	32235275	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR6	9107	broad.mit.edu	37	13	25840081	25840081	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9011493	9011493	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9049248	9049248	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9062525	9062525	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1017340	1017340	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1018123	1018123	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MURC	347273	broad.mit.edu	37	9	103348395	103348395	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3229560	3229560	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL1	4603	broad.mit.edu	37	8	67509761	67509761	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10263396	10263396	+	Intron	DEL	T	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10399523	10399523	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10533279	10533279	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL10	93408	broad.mit.edu	37	7	101257078	101257078	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123456294	123456294	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34862281	34862281	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26436361	26436361	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72208825	72208825	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17317262	17317262	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62850370	62850370	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62853402	62853402	+	Splice_Site	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAE1	8883	broad.mit.edu	37	16	66850378	66850378	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT1	9	broad.mit.edu	37	8	18079724	18079725	+	Frame_Shift_Ins	INS	-	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35730044	35730044	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90949303	90949303	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145682200	145682200	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16891476	16891476	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCALD	83988	broad.mit.edu	37	8	102731843	102731843	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF1	653361	broad.mit.edu	37	7	74193544	74193544	+	Intron	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4	4734	broad.mit.edu	37	15	56122021	56122021	+	3'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73409019	73409019	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68156481	68156481	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC3	387921	broad.mit.edu	37	13	39621177	39621177	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID2	22795	broad.mit.edu	37	14	52520664	52520664	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3600408	3600408	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247586625	247586625	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247588117	247588117	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120459358	120459358	+	Intron	SNP	T	C	C	rs139151783	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69327796	69327796	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPTX2	4885	broad.mit.edu	37	7	98254541	98254541	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPVF	64111	broad.mit.edu	37	7	25264849	25264849	+	Intron	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E1	7101	broad.mit.edu	37	6	108496159	108496159	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52277630	52277630	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206605167	206605167	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206630448	206630448	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50170836	50170836	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	78709802	78709802	+	RNA	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80271349	80271349	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSFL1C	55968	broad.mit.edu	37	20	1426548	1426548	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88679745	88679745	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131742868	131742868	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPL1	9818	broad.mit.edu	37	13	25881941	25881941	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGG1	4968	broad.mit.edu	37	3	9807579	9807579	+	Silent	SNP	C	T	T	rs150915328		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53602929	53602929	+	5'Flank	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132813063	132813064	+	5'Flank	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPLAH	26873	broad.mit.edu	37	8	145113021	145113021	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123894507	123894507	+	Missense_Mutation	SNP	C	T	T	rs148745928		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11A1	26531	broad.mit.edu	37	6	29394980	29394980	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13A1	79290	broad.mit.edu	37	10	45799823	45799823	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J4	26219	broad.mit.edu	37	9	125282291	125282291	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248684931	248684931	+	5'Flank	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248185547	248185547	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135976	55135976	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51516152	51516152	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22369185	22369185	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22414141	22414141	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22414193	22414193	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51E1	143503	broad.mit.edu	37	11	4674333	4674333	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A5	390084	broad.mit.edu	37	11	5989509	5989509	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C2	341416	broad.mit.edu	37	12	55846340	55846340	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C75	390323	broad.mit.edu	37	12	55759343	55759343	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A4	130075	broad.mit.edu	37	7	141619191	141619191	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9I1	219954	broad.mit.edu	37	11	57886584	57886584	+	Silent	SNP	C	T	T	rs144479851		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC5L	5001	broad.mit.edu	37	7	103838232	103838232	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL7	114881	broad.mit.edu	37	17	45893993	45893993	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSR2	116039	broad.mit.edu	37	8	99961564	99961564	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21698946	21698947	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUB2	78990	broad.mit.edu	37	14	94505495	94505495	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD3	23252	broad.mit.edu	37	1	20231577	20231577	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD5	55593	broad.mit.edu	37	X	48791691	48791699	+	Intron	DEL	TGACCTCTA	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	32058191	32058191	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29617627	29617627	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29649408	29649408	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVGP1	5016	broad.mit.edu	37	1	111966362	111966362	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1L	80336	broad.mit.edu	37	20	43552898	43552898	+	Splice_Site	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17548814	17548815	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI2	11240	broad.mit.edu	37	1	17418823	17418823	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAFAH2	5051	broad.mit.edu	37	1	26310565	26310565	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161969941	161969941	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25026372	25026372	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55581535	55581535	+	3'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56106127	56106127	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207410	58207410	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH18	54510	broad.mit.edu	37	4	138450017	138450017	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141248253	141248253	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263227	140263227	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140189248	140189248	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA2	56146	broad.mit.edu	37	5	140175792	140175792	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140572519	140572519	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140627409	140627409	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB2	56133	broad.mit.edu	37	5	140475761	140475761	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140554470	140554470	+	Missense_Mutation	SNP	C	A	A	rs17844475		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140762382	140762382	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140763012	140763012	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140750841	140750841	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140752016	140752016	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB5	56101	broad.mit.edu	37	5	140779392	140779392	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93031310	93031310	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56139537	56139537	+	Splice_Site	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71500153	71500153	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78803463	78803463	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145075801	145075801	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73433556	73433556	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156883536	156883536	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG10	23089	broad.mit.edu	37	7	94292998	94292998	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49754088	49754088	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28800750	28800750	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF2	5253	broad.mit.edu	37	9	96438917	96438917	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75761495	75761495	+	3'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39535063	39535063	+	5'Flank	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39537583	39537583	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CD	5293	broad.mit.edu	37	1	9775847	9775847	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R6	146850	broad.mit.edu	37	17	8738820	8738820	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130847292	130847292	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL2	55124	broad.mit.edu	37	8	22163412	22163412	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25123945	25123945	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47842854	47842854	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47920224	47920224	+	Intron	SNP	C	G	G	rs112196795		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2L2	27039	broad.mit.edu	37	5	137260863	137260864	+	Intron	INS	-	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110445572	110445572	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN1	5585	broad.mit.edu	37	19	14578614	14578614	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAGL2	5326	broad.mit.edu	37	20	30784196	30784196	+	3'UTR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28821700	28821700	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8678238	8678238	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81888159	81888159	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81925085	81925085	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198950857	198950857	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA2	59339	broad.mit.edu	37	8	38810931	38810931	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132110031	132110031	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132110713	132110713	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG7	440107	broad.mit.edu	37	12	93149727	93149727	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH1	57475	broad.mit.edu	37	14	68038673	68038673	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20335730	20335730	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208206713	208206713	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208390847	208390847	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131815199	131815199	+	3'UTR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131815315	131815315	+	Missense_Mutation	SNP	G	T	T	rs150228337	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118305811	118305811	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24767091	24767091	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89867077	89867077	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113300233	113300233	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106851158	106851158	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38158075	38158075	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130832725	130832725	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149221758	149221758	+	Intron	SNP	C	T	T	rs34694241		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIL4	85313	broad.mit.edu	37	6	149854524	149854524	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12A	4659	broad.mit.edu	37	12	80189568	80189568	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5E	5529	broad.mit.edu	37	14	63858436	63858436	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM12	59335	broad.mit.edu	37	9	133542010	133542010	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509160	23509160	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44553863	44553863	+	Silent	SNP	C	A	A	rs140525819		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57398234	57398234	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD3	23683	broad.mit.edu	37	2	37543236	37543236	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRM2	5620	broad.mit.edu	37	16	11369761	11369761	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT6	55170	broad.mit.edu	37	1	107600389	107600389	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROZ	8858	broad.mit.edu	37	13	113814250	113814250	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS36	146547	broad.mit.edu	37	16	31157191	31157191	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79321559	79321559	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79323135	79323135	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43371807	43371807	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43688766	43688766	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43579899	43579899	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43433838	43433838	+	Silent	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSKH2	85481	broad.mit.edu	37	8	87081723	87081723	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS2	5743	broad.mit.edu	37	1	186645536	186645536	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209271755	209271755	+	5'UTR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136912613	136912613	+	3'UTR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN13	5783	broad.mit.edu	37	4	87671562	87671564	+	Intron	DEL	ATT	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40713580	40713580	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41101018	41101018	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTTG2	10744	broad.mit.edu	37	4	37962455	37962455	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7L	83448	broad.mit.edu	37	12	44132699	44132699	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1667392	1667392	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64514683	64514683	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158906990	158906990	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSOX2	169714	broad.mit.edu	37	9	139107123	139107123	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220341143	220341143	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB6B	51560	broad.mit.edu	37	3	133560114	133560114	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB9BP1	9366	broad.mit.edu	37	5	104435192	104435192	+	RNA	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45459079	45459079	+	RNA	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAET1K	646024	broad.mit.edu	37	6	150322629	150322629	+	RNA	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34803879	34803879	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALBP1	10928	broad.mit.edu	37	18	9533746	9533746	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20392911	20392911	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GDS1	5910	broad.mit.edu	37	4	99300403	99300403	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF3	10411	broad.mit.edu	37	12	48134736	48134736	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF5	83593	broad.mit.edu	37	1	206757707	206757707	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47038768	47038768	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM14	10432	broad.mit.edu	37	11	66392833	66392833	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145643117	145643117	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H2	54542	broad.mit.edu	37	9	125645412	125645412	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79348687	79348687	+	Splice_Site	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385666	79385666	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103180617	103180617	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103215939	103215939	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103234901	103234902	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103292158	103292158	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103292171	103292171	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103322703	103322703	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43606965	43606965	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD3	55159	broad.mit.edu	37	16	74685929	74685929	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117241716	117241716	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS5	8490	broad.mit.edu	37	1	163122534	163122534	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCG	51458	broad.mit.edu	37	15	90023434	90023434	+	Intron	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38963016	38963016	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104897708	104897708	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105010354	105010355	+	Intron	INS	-	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105235886	105235886	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87364732	87364732	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78350335	78350335	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNPEP	6051	broad.mit.edu	37	1	201973564	201973564	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78766425	78766425	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10480505	10480505	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGR	6103	broad.mit.edu	37	X	38170068	38170068	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPP30	10556	broad.mit.edu	37	10	92645477	92645477	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166999852	166999852	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67684766	67684766	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38973578	38973578	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237538101	237538101	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237670064	237670064	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237789102	237789102	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237870278	237870278	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237895335	237895335	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237896899	237896899	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237948103	237948103	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237965251	237965251	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33842464	33842464	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33991938	33991938	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR3	1903	broad.mit.edu	37	9	91616117	91616117	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9L	219285	broad.mit.edu	37	7	92762522	92762522	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SC4MOL	6307	broad.mit.edu	37	4	166254679	166254679	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAP	22937	broad.mit.edu	37	3	47460980	47460980	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38739735	38739735	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62018356	62018356	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38592373	38592373	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4D	10507	broad.mit.edu	37	9	91995896	91995896	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERP2	387923	broad.mit.edu	37	13	44971347	44971347	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95088785	95088785	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61231116	61231116	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINI2	5276	broad.mit.edu	37	3	167159885	167159885	+	3'UTR	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47163563	47163563	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT1	51460	broad.mit.edu	37	3	52977626	52977626	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA1	653509	broad.mit.edu	37	10	81371615	81371615	+	Frame_Shift_Del	DEL	T	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA2	729238	broad.mit.edu	37	10	81317230	81317230	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPA2	729238	broad.mit.edu	37	10	81319205	81319205	+	Frame_Shift_Del	DEL	A	-	-	rs72659394		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134494709	134494709	+	Intron	DEL	A	-	-	rs113667538		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHE	126669	broad.mit.edu	37	1	154473806	154473806	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHFM1	7979	broad.mit.edu	37	7	96324252	96324252	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX2	6474	broad.mit.edu	37	3	157820574	157820574	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232579372	232579372	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPG	55423	broad.mit.edu	37	20	1615854	1615854	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX1	6495	broad.mit.edu	37	14	61113223	61113223	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160589729	160589729	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLA	6503	broad.mit.edu	37	8	134050794	134050794	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A13	201232	broad.mit.edu	37	17	6943341	6943341	+	3'UTR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25813179	25813179	+	Silent	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100812016	100812016	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A5	283652	broad.mit.edu	37	15	48413249	48413249	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103051719	103051719	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A1	2030	broad.mit.edu	37	6	44200467	44200467	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A3	285641	broad.mit.edu	37	5	150657056	150657056	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46623501	46623501	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A8	146167	broad.mit.edu	37	16	84067060	84067060	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A14	23516	broad.mit.edu	37	8	22273519	22273520	+	Intron	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A1	50651	broad.mit.edu	37	1	8384429	8384429	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33947230	33947230	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85264531	85264531	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110717483	110717484	+	Nonsense_Mutation	DNP	GG	CT	CT	rs142547110	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1208962	1208962	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A13	157724	broad.mit.edu	37	8	87242304	87242305	+	Missense_Mutation	DNP	GC	AG	AG			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173476059	173476059	+	Missense_Mutation	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67298319	67298319	+	Missense_Mutation	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48461680	48461680	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98778737	98778737	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168123464	168123464	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK3	22865	broad.mit.edu	37	3	164907292	164907292	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88329901	88329901	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47703910	47703910	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMR3A	26952	broad.mit.edu	37	4	71232763	71232763	+	3'UTR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1079148	1079148	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108339034	108339034	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108437228	108437228	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106849635	106849635	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX14	8403	broad.mit.edu	37	3	137484280	137484280	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231090583	231090583	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG11A	653423	broad.mit.edu	37	8	7718286	7718286	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAM1	6677	broad.mit.edu	37	7	123594981	123594981	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172641954	172641954	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA8	145946	broad.mit.edu	37	15	97328107	97328107	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDEF	25803	broad.mit.edu	37	6	34512074	34512074	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35727671	35727671	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220326615	220326615	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220326812	220326812	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147475357	147475357	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55904856	55904856	+	5'UTR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55906779	55906779	+	Intron	DEL	A	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRED1	161742	broad.mit.edu	37	15	38614714	38614714	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRY3	10251	broad.mit.edu	37	X	155003584	155003584	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648558	55648558	+	5'Flank	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55648707	55648707	+	5'Flank	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158615096	158615096	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX2IP	117178	broad.mit.edu	37	1	85130304	85130304	+	Intron	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC3	246329	broad.mit.edu	37	12	57642449	57642449	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBPL1	57559	broad.mit.edu	37	10	90670738	90670738	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48898788	48898788	+	Missense_Mutation	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108863848	108863848	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91769503	91769503	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115417046	115417046	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58476868	58476868	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152646446	152646446	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64445806	64445806	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119979067	119979067	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYVN1	84447	broad.mit.edu	37	11	64897466	64897466	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23907165	23907165	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF5	6877	broad.mit.edu	37	10	105145020	105145020	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAL1	6886	broad.mit.edu	37	1	47685773	47685773	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP1	6890	broad.mit.edu	37	6	32818283	32818283	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARSL2	123283	broad.mit.edu	37	15	102197239	102197240	+	Splice_Site	DNP	CC	TA	TA			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAX1BP1	8887	broad.mit.edu	37	7	27856405	27856405	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D19	55296	broad.mit.edu	37	4	26661218	26661219	+	Splice_Site	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74173963	74173963	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D21	161514	broad.mit.edu	37	15	74178588	74178588	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162274207	162274207	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79282284	79282284	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	132944642	132944642	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10L2	401285	broad.mit.edu	37	6	167592552	167592552	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTEX1D1	200132	broad.mit.edu	37	1	67242971	67242971	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179561783	179561783	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104460728	104460728	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65147209	65147209	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69830219	69830219	+	Intron	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100225567	100225567	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2LX	90316	broad.mit.edu	37	X	89177268	89177268	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43572139	43572139	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133945830	133945830	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP5	168451	broad.mit.edu	37	7	108205269	108205269	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137988681	137988681	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138376014	138376014	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156378470	156378470	+	Intron	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120470782	120470782	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR7	51284	broad.mit.edu	37	X	12904999	12904999	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLX1	3195	broad.mit.edu	37	10	102894055	102894055	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75357402	75357402	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO4	255104	broad.mit.edu	37	1	20009803	20009804	+	Missense_Mutation	DNP	CT	AA	AA			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126138981	126138981	+	Missense_Mutation	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM139	135932	broad.mit.edu	37	7	142983428	142983428	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM146	257062	broad.mit.edu	37	19	5724880	5724881	+	Intron	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63C	57156	broad.mit.edu	37	14	77715175	77715175	+	Silent	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM82	388595	broad.mit.edu	37	1	16070900	16070900	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68928493	68928493	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19756051	19756051	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS7	344805	broad.mit.edu	37	3	111769685	111769685	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101315136	101315136	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12248921	12248921	+	Silent	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNP2	7142	broad.mit.edu	37	16	11363161	11363161	+	Splice_Site	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32014146	32014146	+	Missense_Mutation	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577100	7577100	+	Missense_Mutation	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPK1	27010	broad.mit.edu	37	7	144380094	144380094	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1439921	1439921	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1488656	1488656	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10920104	10920104	+	Nonsense_Mutation	SNP	C	A	A	rs142165446		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10920240	10920240	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10951465	10951465	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209955544	209955544	+	3'UTR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREM1	54210	broad.mit.edu	37	6	41254489	41254489	+	5'Flank	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM41	90933	broad.mit.edu	37	5	180662378	180662381	+	3'UTR	DEL	GAGA	-	-	rs150126743		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55033009	55033010	+	Intron	DNP	CC	AA	AA			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72973731	72973731	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77377235	77377235	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC1	7248	broad.mit.edu	37	9	135781222	135781222	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC15	51112	broad.mit.edu	37	2	3392034	3392034	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL11	158135	broad.mit.edu	37	9	124801637	124801637	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL9	164395	broad.mit.edu	37	20	30475161	30475161	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179497479	179497480	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179595581	179595581	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179622670	179622670	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH3	80727	broad.mit.edu	37	7	2696151	2696151	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404459	34404459	+	RNA	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBN2	254048	broad.mit.edu	37	7	138954050	138954050	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43308167	43308167	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTD1	80019	broad.mit.edu	37	10	99327986	99327986	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69682288	69682288	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70346228	70346228	+	3'UTR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41504603	41504603	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33491042	33491042	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33501393	33501393	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176297470	176297470	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158978086	158978086	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17552622	17552622	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP43	124739	broad.mit.edu	37	17	9613391	9613391	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP46	64854	broad.mit.edu	37	4	53492173	53492173	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75302898	75302898	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41026659	41026659	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	120403475	120403475	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	121380700	121380700	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	21683324	21683324	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38931283	38931283	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43230150	43230150	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46174476	46174476	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18892850	18892850	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18893237	18893237	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18993702	18993702	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48453828	48453828	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49053610	49053610	+	IGR	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50129610	50129610	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55234776	55234776	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56216749	56216749	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58009870	58009870	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79699601	79699601	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79699687	79699687	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89467185	89467185	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89486796	89486796	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	97158079	97158079	+	IGR	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19254803	19254803	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19467055	19467055	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19931667	19931667	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	24903070	24903070	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59104869	59104869	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66362288	66362288	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19413127	19413127	+	IGR	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39196968	39196969	+	IGR	INS	-	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	60960730	60960731	+	IGR	DNP	GG	TT	TT			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20450299	20450299	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20845183	20845183	+	IGR	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22763664	22763664	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23577632	23577632	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28751996	28751996	+	IGR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78273810	78273810	+	IGR	SNP	C	A	A	rs140314836	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32178956	32178956	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32179059	32179059	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32486680	32486680	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32915119	32915120	+	IGR	DNP	CC	TA	TA			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605144	33605144	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59200916	59200916	+	IGR	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60391466	60391466	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20674378	20674378	+	IGR	SNP	C	A	A	rs142494596	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30036644	30036644	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60215098	60215098	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	67703437	67703437	+	IGR	SNP	C	A	A	rs140678444	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14997974	14997974	+	IGR	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232515	26232515	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16103815	16103815	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20359968	20359968	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53507628	53507628	+	IGR	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54120492	54120492	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	57688585	57688585	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9315761	9315761	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101721966	101721966	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106435813	106435813	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146585025	146585025	+	IGR	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148902967	148902967	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158694704	158694704	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164325927	164325927	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17015405	17015405	+	IGR	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79987420	79987420	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79987545	79987545	+	IGR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11589515	11589515	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11114710	11114710	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181278	11181278	+	IGR	SNP	T	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14757006	14757006	+	IGR	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14899767	14899767	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15313140	15313140	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24780561	24780561	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349294	16349294	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16349563	16349563	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16365684	16365685	+	IGR	INS	-	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16651185	16651185	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	20474956	20474956	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	30939994	30939994	+	IGR	SNP	G	T	T	rs149045396		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105295029	105295030	+	IGR	INS	-	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106961879	106961880	+	IGR	INS	-	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107107809	107107809	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117938666	117938666	+	IGR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130987774	130987774	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139170111	139170111	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210043517	210043517	+	IGR	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34064824	34064824	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97747073	97747073	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137600990	137600990	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166409272	166409272	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166783890	166783890	+	IGR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180042238	180042238	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35257461	35257461	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75465309	75465309	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856405	82856405	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069820	96069820	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	10256945	10256945	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	110267448	110267448	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	122999070	122999070	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135967386	135967386	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	139544689	139544689	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28825357	28825357	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65298547	65298547	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69727146	69727146	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	82931909	82931909	+	IGR	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110284381	110284381	+	IGR	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126506357	126506357	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126847698	126847698	+	IGR	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	137790271	137790271	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165455669	165455669	+	IGR	SNP	G	T	T	rs142040257	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173940303	173940303	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910199	25910199	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39719184	39719184	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	54847821	54847821	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	79611618	79611618	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84296076	84296076	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	134422612	134422612	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	54349906	54349906	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80777377	80777377	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85997030	85997030	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	88986031	88986031	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	98627401	98627401	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124985234	124985234	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	138125779	138125779	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707913	144707913	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46039483	46039483	+	IGR	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53070801	53070801	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255917	53255917	+	IGR	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53256000	53256000	+	IGR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930217	53930217	+	IGR	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930656	53930656	+	IGR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55742966	55742966	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128270	57128270	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217267	57217267	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62586656	62586656	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62586697	62586697	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63032925	63032925	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63475717	63475717	+	IGR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9655501	9655501	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33827082	33827082	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36953650	36953650	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43298268	43298268	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43529583	43529583	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	58156775	58156775	+	IGR	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70856804	70856804	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	7878182	7878182	+	IGR	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	107267536	107267536	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125600468	125600468	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32676413	32676413	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44090301	44090301	+	IGR	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68429203	68429203	+	IGR	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	71224809	71224809	+	IGR	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84702310	84702310	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	118207158	118207158	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134748781	134748781	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134748987	134748987	+	IGR	DEL	T	-	-	rs66464343		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134775945	134775945	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	140233349	140233349	+	IGR	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155058694	155058694	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155215338	155215338	+	IGR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26522822	26522822	+	IGR	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	44508800	44508800	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63264894	63264894	+	IGR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	71948433	71948433	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14078099	14078099	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	6136140	6136140	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	9154605	9154605	+	IGR	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160385714	160385714	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VASN	114990	broad.mit.edu	37	16	4431769	4431769	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82779290	82779290	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCX3B	425054	broad.mit.edu	37	X	8433434	8433434	+	5'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38948571	38948571	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61040724	61040724	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR3	10885	broad.mit.edu	37	1	118477140	118477140	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR54	84058	broad.mit.edu	37	2	74652753	74652753	+	Silent	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37438125	37438125	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54687885	54687885	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC2	7469	broad.mit.edu	37	4	1989724	1989724	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT10A	80326	broad.mit.edu	37	2	219754782	219754782	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT16	51384	broad.mit.edu	37	7	120969480	120969481	+	Intron	INS	-	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32414272	32414272	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31628754	31628754	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO1	7514	broad.mit.edu	37	2	61718001	61718001	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF5	81555	broad.mit.edu	37	5	143549609	143549609	+	Intron	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDF1	54915	broad.mit.edu	37	20	61834033	61834033	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101370100	101370100	+	Missense_Mutation	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB41	360023	broad.mit.edu	37	1	197128743	197128743	+	Missense_Mutation	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1	56829	broad.mit.edu	37	7	138764850	138764850	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31650305	31650305	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72991277	72991277	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77768253	77768253	+	Silent	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP161	7541	broad.mit.edu	37	18	5290892	5290892	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108672	147108672	+	Intron	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147108946	147108946	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147114004	147114004	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57286128	57286128	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT1	84460	broad.mit.edu	37	X	101153022	101153022	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF19	7567	broad.mit.edu	37	16	71512219	71512219	+	Silent	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF229	7772	broad.mit.edu	37	19	44934092	44934092	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF230	7773	broad.mit.edu	37	19	44511178	44511178	+	5'UTR	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74607043	74607043	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38127072	38127072	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280B	140883	broad.mit.edu	37	22	22843330	22843330	+	Frame_Shift_Del	DEL	G	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF416	55659	broad.mit.edu	37	19	58084849	58084849	+	Silent	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF449	203523	broad.mit.edu	37	X	134494750	134494750	+	Silent	SNP	A	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF451	26036	broad.mit.edu	37	6	57012581	57012581	+	Silent	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF484	83744	broad.mit.edu	37	9	95609812	95609812	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF485	220992	broad.mit.edu	37	10	44112653	44112653	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF497	162968	broad.mit.edu	37	19	58867550	58867550	+	Silent	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF519	162655	broad.mit.edu	37	18	14132260	14132260	+	Intron	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF532	55205	broad.mit.edu	37	18	56586014	56586014	+	Silent	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31040278	31040278	+	Missense_Mutation	SNP	C	A	A	rs148378803		TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF549	256051	broad.mit.edu	37	19	58039059	58039059	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	64953	64953	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182027050	182027050	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53669454	53669454	+	Missense_Mutation	SNP	C	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF671	79891	broad.mit.edu	37	19	58238788	58238788	+	Missense_Mutation	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53473707	53473707	+	RNA	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57509920	57509920	+	5'UTR	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57522863	57522863	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF773	374928	broad.mit.edu	37	19	58015998	58015998	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF81	347344	broad.mit.edu	37	X	47775357	47775357	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23545576	23545576	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22575523	22575523	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT1	10467	broad.mit.edu	37	7	100865743	100865743	+	Intron	SNP	A	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZPBP	11055	broad.mit.edu	37	7	50070781	50070781	+	Missense_Mutation	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131905987	131905987	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58759953	58759953	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	24736136	24736136	+	RNA	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31284459	31284459	+	Splice_Site	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22580379	22580379	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20488833	20488833	+	RNA	SNP	G	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20490524	20490524	+	RNA	DEL	T	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20495293	20495293	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34739638	34739638	+	RNA	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34739909	34739909	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15890583	15890583	+	RNA	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23159167	23159167	+	RNA	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159375926	159375926	+	Intron	SNP	G	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	20294474	20294474	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89470441	89470441	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89986468	89986468	+	Intron	DEL	C	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90229057	90229057	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	905993	905993	+	5'Flank	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33969806	33969806	+	Intron	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69340476	69340476	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170446	24170446	+	Intron	SNP	A	G	G			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24171317	24171317	+	Intron	SNP	T	C	C			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	43587377	43587377	+	Intron	SNP	T	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142032319	142032319	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143174946	143174946	+	Intron	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148963787	148963787	+	RNA	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63369943	63369943	+	Intron	SNP	C	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99580803	99580803	+	Missense_Mutation	SNP	C	A	A			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99584813	99584813	+	Intron	SNP	G	T	T	rs78814428	by1000genomes	TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12435588	12435588	+	Intron	DEL	A	-	-			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86568020	86568020	+	5'Flank	SNP	G	T	T			TCGA-64-5775-01A-01D-1625-08	TCGA-64-5775-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
