Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB5	340273	broad.mit.edu	37	7	20744298	20744299	+	Intron	INS	-	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22063603	22063603	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119024853	119024853	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119027854	119027854	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109679096	109679096	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER2	340485	broad.mit.edu	37	9	19450737	19450737	+	3'UTR	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX1	51	broad.mit.edu	37	17	73952084	73952084	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL8	81569	broad.mit.edu	37	1	18153051	18153051	+	3'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69347566	69347566	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156932741	156932741	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156997870	156997870	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106134617	106134617	+	Intron	SNP	G	C	C	rs143356374	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106833586	106833586	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107035200	107035200	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107183745	107183745	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM9	8754	broad.mit.edu	37	8	38913347	38913347	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33561189	33561189	+	Silent	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33576896	33576896	+	Missense_Mutation	SNP	G	C	C	rs145508149	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5239824	5239824	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	128956549	128956549	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178581831	178581832	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64748458	64748458	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45743439	45743439	+	Intron	SNP	C	A	A	rs77265241	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131916288	131916288	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100239267	100239267	+	Silent	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRB3	155	broad.mit.edu	37	8	37823766	37823766	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1	60312	broad.mit.edu	37	4	7873731	7873731	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGFG1	3267	broad.mit.edu	37	2	228389458	228389458	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247063588	247063588	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134253097	134253097	+	Intron	SNP	T	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134254059	134254059	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4882105	4882105	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10B	144245	broad.mit.edu	37	12	38711838	38711838	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108264187	108264187	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54517752	54517752	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14797654	14797654	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	73944684	73944684	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26677674	26677674	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45823076	45823076	+	Silent	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118386	165118386	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40829215	40829215	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB2	323	broad.mit.edu	37	4	40946967	40946967	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112175531	112175531	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11353812	11353812	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11353957	11353957	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101095364	101095364	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176984102	176984102	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177030287	177030287	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31319575	31319575	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14634051	14634051	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108160401	108160401	+	Nonsense_Mutation	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A1	476	broad.mit.edu	37	1	116939183	116939183	+	Intron	DEL	G	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10452263	10452263	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11021258	11021258	+	Intron	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69349144	69349144	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156617830	156617830	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52570044	52570044	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCR	613	broad.mit.edu	37	22	23637372	23637372	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLID	414899	broad.mit.edu	37	11	121986476	121986476	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55803316	55803316	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103761774	103761774	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105973905	105973905	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95910832	95910832	+	Nonsense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30447599	30447599	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf26	54823	broad.mit.edu	37	1	185143447	185143447	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf63	57035	broad.mit.edu	37	1	25573174	25573174	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf118	140711	broad.mit.edu	37	20	35504392	35504392	+	5'Flank	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf46	55321	broad.mit.edu	37	20	1162053	1162053	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf33	339669	broad.mit.edu	37	22	37387601	37387601	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119445030	119445030	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71200872	71200872	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf103	79747	broad.mit.edu	37	6	147124520	147124520	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf192	116843	broad.mit.edu	37	6	133091382	133091383	+	3'UTR	DNP	CC	AA	AA			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf218	221718	broad.mit.edu	37	6	10430311	10430311	+	RNA	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf34	135927	broad.mit.edu	37	7	142636692	142636692	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf52	375607	broad.mit.edu	37	7	100816680	100816680	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15623519	15623519	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf93	203238	broad.mit.edu	37	9	15623521	15623521	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP2	51475	broad.mit.edu	37	11	67287145	67287145	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2760996	2760996	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201030557	201030557	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201035434	201035434	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159162262	159162262	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN2	824	broad.mit.edu	37	1	223939524	223939524	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78163493	78163493	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104904801	104904801	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN2	147381	broad.mit.edu	37	18	70206146	70206146	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC125	202243	broad.mit.edu	37	5	68588268	68588268	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC142	84865	broad.mit.edu	37	2	74709988	74709988	+	Translation_Start_Site	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC61	729440	broad.mit.edu	37	19	46521386	46521386	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC91	55297	broad.mit.edu	37	12	28544443	28544443	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6291976	6291976	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCPG1	9236	broad.mit.edu	37	15	55734919	55734919	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158326823	158326823	+	3'UTR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD63	967	broad.mit.edu	37	12	56120552	56120552	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31323516	31323516	+	3'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123177335	123177335	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214820057	214820057	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55857662	55857662	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31917095	31917095	+	Missense_Mutation	SNP	G	A	A	rs150398964		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGN	57530	broad.mit.edu	37	1	151508772	151508772	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAF1A	10036	broad.mit.edu	37	19	4423952	4423952	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21878145	21878145	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21896230	21896230	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5903619	5903619	+	Nonsense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61978252	61978252	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1L	81037	broad.mit.edu	37	5	1334344	1334344	+	Intron	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPX	10845	broad.mit.edu	37	15	65456290	65456300	+	Intron	DEL	AGAAAGTGAGG	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLUL1	27098	broad.mit.edu	37	18	627315	627315	+	Missense_Mutation	SNP	A	T	T	rs115407065	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH3	149111	broad.mit.edu	37	1	224927039	224927039	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70739903	70739903	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3078942	3078942	+	Silent	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG2	22796	broad.mit.edu	37	1	230804530	230804530	+	Frame_Shift_Del	DEL	G	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103435776	103435776	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70647843	70647843	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56035464	56035464	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86308181	86308181	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189862040	189862040	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110862279	110862279	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3685151	3685151	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128971533	128971533	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO1C	23603	broad.mit.edu	37	12	109048218	109048218	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130008537	130008537	+	3'UTR	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207787753	207787753	+	Nonsense_Mutation	SNP	C	T	T	rs55749440		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1414408	1414408	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT2	55454	broad.mit.edu	37	10	43678551	43678551	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3072116	3072116	+	Nonsense_Mutation	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113277872	113277872	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1A1L	122011	broad.mit.edu	37	13	37679478	37679478	+	5'UTR	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143995581	143995581	+	Intron	DEL	G	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4B1	1580	broad.mit.edu	37	1	47284377	47284378	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTIP	9595	broad.mit.edu	37	2	158272582	158272582	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85404137	85404137	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685797	125685797	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA6	1671	broad.mit.edu	37	8	6783434	6783434	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB125	245938	broad.mit.edu	37	20	76649	76649	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47904726	47904726	+	Missense_Mutation	SNP	A	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLK1	8788	broad.mit.edu	37	14	101200399	101200399	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT1	1761	broad.mit.edu	37	9	893993	893993	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11583119	11583119	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB4	11080	broad.mit.edu	37	1	78479142	78479142	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6697168	6697168	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP4	1803	broad.mit.edu	37	2	162902123	162902123	+	Splice_Site	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRAM1	55332	broad.mit.edu	37	12	102301835	102301836	+	Intron	INS	-	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD1	1812	broad.mit.edu	37	5	174869878	174869878	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSN1	79980	broad.mit.edu	37	20	35386512	35386512	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56417220	56417220	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95439681	95439681	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95439773	95439773	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71730487	71730487	+	Intron	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F7	144455	broad.mit.edu	37	12	77421759	77421759	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EID2B	126272	broad.mit.edu	37	19	40023401	40023401	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4B	1975	broad.mit.edu	37	12	53427638	53427638	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23701601	23701601	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF3	1999	broad.mit.edu	37	1	201980419	201980419	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF4	2000	broad.mit.edu	37	X	129206319	129206319	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107501260	107501260	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMCN	51705	broad.mit.edu	37	4	101386786	101386786	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6890553	6890553	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120612880	120612880	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34817356	34817356	+	3'UTR	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131190797	131190797	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97454809	97454809	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76948374	76948374	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXO1	9156	broad.mit.edu	37	1	242042436	242042436	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187208902	187208902	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197019870	197019870	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169511405	169511405	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAHD2A	51011	broad.mit.edu	37	2	96078209	96078209	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25744101	25744101	+	Frame_Shift_Del	DEL	C	-	-	rs147191374		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6240169	6240169	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM167A	83648	broad.mit.edu	37	8	11301689	11301689	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM172A	83989	broad.mit.edu	37	5	93018747	93018747	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10680380	10680380	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10691435	10691435	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71D	161142	broad.mit.edu	37	14	67675040	67675040	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL18	80028	broad.mit.edu	37	7	5540239	5540239	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL4	26235	broad.mit.edu	37	6	99323305	99323305	+	Missense_Mutation	SNP	T	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161569700	161569700	+	3'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157718300	157718300	+	Intron	SNP	C	T	T	rs35515182		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9	11328	broad.mit.edu	37	7	33035768	33035768	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152280088	152280088	+	Missense_Mutation	SNP	T	A	A	rs148955202		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128496821	128496821	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89392728	89392728	+	5'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14746969	14746969	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39435642	39435642	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD3	257019	broad.mit.edu	37	9	85987778	85987778	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49210182	49210182	+	Intron	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17443790	17443790	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47428113	47428113	+	3'UTR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46099327	46099327	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89909201	89909201	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22737959	22737959	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109086113	109086113	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM1	8521	broad.mit.edu	37	6	52998877	52998877	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72618391	72618391	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55223906	55223906	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA1	2697	broad.mit.edu	37	6	121769164	121769164	+	3'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJC1	10052	broad.mit.edu	37	17	42882388	42882388	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJD2	57369	broad.mit.edu	37	15	35045111	35045111	+	Silent	SNP	T	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI1	2735	broad.mit.edu	37	12	57864593	57864593	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRX3	10539	broad.mit.edu	37	10	131977798	131977798	+	3'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAO1	2775	broad.mit.edu	37	16	56374626	56374626	+	Intron	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131025212	131025212	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121386567	121386567	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC3	2719	broad.mit.edu	37	X	132730768	132730768	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPN2	54707	broad.mit.edu	37	1	27212601	27212601	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23296798	23296798	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR114	221188	broad.mit.edu	37	16	57602080	57602080	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR115	221393	broad.mit.edu	37	6	47675979	47675979	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2D	2906	broad.mit.edu	37	19	48923004	48923004	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSR	2936	broad.mit.edu	37	8	30538645	30538645	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2F1	2962	broad.mit.edu	37	19	6383269	6383269	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658885	72658885	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27476052	27476052	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HABP2	3026	broad.mit.edu	37	10	115345649	115345649	+	Missense_Mutation	SNP	T	A	A	rs148362361	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHA	3030	broad.mit.edu	37	2	26415302	26415302	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAP1	9001	broad.mit.edu	37	17	39880924	39880924	+	3'UTR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBD	3045	broad.mit.edu	37	11	5255339	5255339	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECA	51696	broad.mit.edu	37	6	139498167	139498167	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28377989	28377989	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28456198	28456198	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HES1	3280	broad.mit.edu	37	3	193855908	193855908	+	Frame_Shift_Del	DEL	T	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DPB1	3115	broad.mit.edu	37	6	33074343	33074343	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPR	10236	broad.mit.edu	37	1	23667394	23667394	+	Silent	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER2	9455	broad.mit.edu	37	15	83561340	83561340	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42829195	42829195	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152188193	152188193	+	Nonsense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22198929	22198929	+	Intron	SNP	T	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA1	5654	broad.mit.edu	37	10	124266501	124266501	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICA1	3382	broad.mit.edu	37	7	8275420	8275420	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148577945	148577945	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA4	3441	broad.mit.edu	37	9	21187444	21187444	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA4	3441	broad.mit.edu	37	9	21187546	21187546	+	5'UTR	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F9	56300	broad.mit.edu	37	2	113742389	113742389	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120606623	120606623	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75993856	75993857	+	Frame_Shift_Ins	INS	-	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123149904	123149904	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68649486	68649486	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7774333	7774333	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN1	55600	broad.mit.edu	37	1	160851995	160851995	+	Splice_Site	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128260954	128260954	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH3	57338	broad.mit.edu	37	16	87723191	87723191	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5155110	5155110	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP2	30819	broad.mit.edu	37	10	103599633	103599633	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62076647	62076647	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36693744	36693744	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36694017	36694017	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27689406	27689406	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42460986	42460986	+	Intron	SNP	T	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0649	9858	broad.mit.edu	37	9	138376778	138376778	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1279	26128	broad.mit.edu	37	10	70776115	70776115	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100139294	100139294	+	3'UTR	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43460143	43460143	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39719544	39719544	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154394443	154394443	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIN	22944	broad.mit.edu	37	10	7801874	7801874	+	Silent	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL18	23276	broad.mit.edu	37	3	47374692	47374692	+	Frame_Shift_Del	DEL	A	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152733815	152733815	+	3'UTR	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPTN	11133	broad.mit.edu	37	19	47981106	47981106	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39595264	39595264	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53004362	53004362	+	Intron	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53012212	53012212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT84	3890	broad.mit.edu	37	12	52778968	52778968	+	Silent	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KY	339855	broad.mit.edu	37	3	134338158	134338158	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42157225	42157225	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54872405	54872405	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129714150	129714150	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183091040	183091040	+	Missense_Mutation	SNP	G	T	T	rs147401305	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI1	9211	broad.mit.edu	37	10	95517964	95517964	+	Silent	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX1	3975	broad.mit.edu	37	17	35297911	35297911	+	Silent	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55178286	55178286	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPA	3988	broad.mit.edu	37	10	90986822	90986822	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNX2	222484	broad.mit.edu	37	13	28143301	28143301	+	Silent	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937605	21937605	+	RNA	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650623	650623	broad.mit.edu	37	10	81442863	81442863	+	RNA	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22749706	22749706	+	RNA	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23223292	23223292	+	RNA	SNP	A	G	G	rs145382269	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23253232	23253232	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62861995	62861995	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62903652	62903652	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC23	10233	broad.mit.edu	37	12	6994304	6994304	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101523840	101523840	+	Silent	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101567452	101567453	+	Intron	INS	-	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSR	51599	broad.mit.edu	37	19	35757268	35757268	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP1	7798	broad.mit.edu	37	1	23417946	23417946	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY86	9450	broad.mit.edu	37	6	6625237	6625237	+	Missense_Mutation	SNP	T	C	C	rs142377958	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160771713	160771713	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACROD1	28992	broad.mit.edu	37	11	63918756	63918756	+	Missense_Mutation	SNP	G	A	A	rs143192829		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65271178	65271178	+	RNA	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B2	23324	broad.mit.edu	37	4	6594859	6594859	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185191201	185191201	+	Silent	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56160442	56160442	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K1	11184	broad.mit.edu	37	19	39096459	39096459	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220800295	220800295	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBL1P	8512	broad.mit.edu	37	10	81666276	81666276	+	Intron	SNP	T	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90428850	90428850	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151085496	151085496	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116421007	116421007	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141760223	141760223	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC26647	219557	broad.mit.edu	37	7	88423561	88423561	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MINK1	50488	broad.mit.edu	37	17	4787674	4787674	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR512-2	574459	broad.mit.edu	37	19	54172229	54172229	+	5'Flank	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR520E	574461	broad.mit.edu	37	19	54178966	54178966	+	RNA	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154861211	154861211	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132325241	132325241	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50581670	50581670	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP3	4356	broad.mit.edu	37	17	41903223	41903223	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX4	117196	broad.mit.edu	37	11	18195006	18195006	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL37	51253	broad.mit.edu	37	1	54665932	54665932	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A12	54860	broad.mit.edu	37	11	60274525	60274525	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124632262	124632262	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9015496	9015496	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10265549	10265549	+	Missense_Mutation	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10408429	10408429	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23855623	23855623	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33567649	33567649	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171258249	171258249	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69933835	69933835	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78444594	78444594	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH2	29781	broad.mit.edu	37	22	50960275	50960275	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133541998	133541998	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDE1	54820	broad.mit.edu	37	16	15784983	15784983	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21074656	21074656	+	3'UTR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152500964	152500964	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21191710	21191710	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2	4778	broad.mit.edu	37	12	54686186	54686186	+	Missense_Mutation	SNP	C	T	T	rs141251053	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51228584	51228584	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36962075	36962075	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56320357	56320357	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56443329	56443329	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369782	56369782	+	Silent	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55450436	55450436	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50746260	50746260	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117697013	117697013	+	Intron	SNP	A	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX5	79400	broad.mit.edu	37	15	69327818	69327818	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44571766	44571766	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36338914	36338914	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115381717	115381717	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50149296	50149296	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156837895	156837896	+	Splice_Site	DNP	GG	TT	TT			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88679638	88679638	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229636555	229636555	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37370996	37370996	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP85	79902	broad.mit.edu	37	17	73222095	73222095	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP88	4927	broad.mit.edu	37	17	5291290	5291290	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8790645	8790645	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OFD1	8481	broad.mit.edu	37	X	13753440	13753440	+	Missense_Mutation	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H6	122748	broad.mit.edu	37	14	20692480	20692480	+	Silent	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14I1	401994	broad.mit.edu	37	1	248844837	248844837	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167182	248167182	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248153792	248153792	+	5'UTR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366604	248366604	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T12	127064	broad.mit.edu	37	1	248458171	248458171	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436623	248436623	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525194	248525194	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135855	55135855	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22332478	22332478	+	5'UTR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AU1	390445	broad.mit.edu	37	14	21623954	21623954	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55681403	55681403	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5W2	390148	broad.mit.edu	37	11	55681593	55681593	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6F1	343169	broad.mit.edu	37	1	247876019	247876019	+	Silent	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6V1	346517	broad.mit.edu	37	7	142749382	142749382	+	5'Flank	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24856101	24856101	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL8	114882	broad.mit.edu	37	12	76779954	76779954	+	Silent	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51535336	51535336	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55826582	55826582	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30723875	30723875	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263146	140263146	+	Silent	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140203040	140203040	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140594762	140594762	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140433455	140433455	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140763083	140763083	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB8P	56120	broad.mit.edu	37	5	140807640	140807640	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD1	115294	broad.mit.edu	37	8	52733224	52733224	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31855474	31855474	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149264140	149264140	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15225424	15225424	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31847460	31847460	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD1	84547	broad.mit.edu	37	6	28254889	28254889	+	Missense_Mutation	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR2	9749	broad.mit.edu	37	6	144110129	144110129	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21B	112885	broad.mit.edu	37	22	45312581	45312581	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS3	10401	broad.mit.edu	37	1	145580564	145580564	+	Silent	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18691045	18691045	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99950799	99950799	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81157445	81157445	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28761222	28761222	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD4	122618	broad.mit.edu	37	14	105395257	105395257	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132169855	132169856	+	Intron	DNP	CC	AA	AA			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXND1	23129	broad.mit.edu	37	3	129288825	129288825	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7606728	7606728	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POGZ	23126	broad.mit.edu	37	1	151400575	151400575	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2200456	2200456	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU1F1	5449	broad.mit.edu	37	3	87309058	87309058	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113518009	113518009	+	Silent	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2D	55844	broad.mit.edu	37	10	133758920	133758920	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129817146	129817146	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG3	10394	broad.mit.edu	37	11	57146087	57146087	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30133002	30133002	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48690420	48690420	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48762047	48762047	+	Silent	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROCR	10544	broad.mit.edu	37	20	33764159	33764159	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	15993766	15993766	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79267519	79267519	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43382468	43382468	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTH2R	5746	broad.mit.edu	37	2	209302230	209302230	+	Intron	DEL	G	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8492918	8492918	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8633238	8633238	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157396617	157396617	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71065677	71065677	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40743739	40743739	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41385102	41385102	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP1	80223	broad.mit.edu	37	8	37729987	37729987	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB40B	10966	broad.mit.edu	37	17	80622412	80622412	+	Missense_Mutation	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB43	339122	broad.mit.edu	37	3	128877272	128877272	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAET1K	646024	broad.mit.edu	37	6	150322055	150322055	+	RNA	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAGE	5891	broad.mit.edu	37	14	102718364	102718364	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36207715	36207715	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARS	5917	broad.mit.edu	37	5	167943746	167943746	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASEF	158158	broad.mit.edu	37	9	85637335	85637335	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1B	153020	broad.mit.edu	37	4	82369318	82369318	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REC8	9985	broad.mit.edu	37	14	24644669	24644669	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECK	8434	broad.mit.edu	37	9	36120599	36120599	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384741	79384741	+	Silent	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERGL	79785	broad.mit.edu	37	12	18237698	18237698	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFPL2	10739	broad.mit.edu	37	22	32587072	32587072	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176012830	176012830	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7BP	401190	broad.mit.edu	37	5	63802441	63802441	+	5'Flank	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCG	51458	broad.mit.edu	37	15	90020439	90020439	+	Splice_Site	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHEB	6009	broad.mit.edu	37	7	151188085	151188085	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOT1	55288	broad.mit.edu	37	17	30477929	30477929	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104897845	104897845	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEL	6041	broad.mit.edu	37	1	182550164	182550164	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF121	55298	broad.mit.edu	37	11	71693869	71693869	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78335755	78335755	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF8	9025	broad.mit.edu	37	6	37336424	37336424	+	Silent	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNMT	8731	broad.mit.edu	37	18	13742661	13742661	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108913234	108913234	+	3'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67860546	67860546	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237813455	237813456	+	Intron	DNP	TG	GT	GT			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBNO1	55206	broad.mit.edu	37	12	123782543	123782543	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBNO2	22904	broad.mit.edu	37	19	1123583	1123597	+	In_Frame_Del	DEL	GCCTCCTCCTCCTCA	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML4	256380	broad.mit.edu	37	6	108070809	108070810	+	Intron	DNP	CC	AA	AA			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83636847	83636847	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9197187	9197187	+	Intron	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	13947932	13947932	+	3'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP2	6452	broad.mit.edu	37	4	2834555	2834555	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148386452	148386452	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHARPIN	81858	broad.mit.edu	37	8	145153699	145153699	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52002350	52002350	+	Intron	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB1	10326	broad.mit.edu	37	20	1559269	1559269	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160465763	160465763	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25849560	25849560	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A3	80704	broad.mit.edu	37	2	228564115	228564115	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205904837	205904837	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A1	206358	broad.mit.edu	37	5	150847497	150847497	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220494287	220494287	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A12	159963	broad.mit.edu	37	11	26725452	26725452	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110709884	110709884	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A17	388662	broad.mit.edu	37	1	110716544	110716544	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55719131	55719131	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20648475	20648475	+	Intron	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A7	6534	broad.mit.edu	37	5	149582308	149582308	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A5	8140	broad.mit.edu	37	16	87872288	87872288	+	Intron	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12L	342615	broad.mit.edu	37	17	33818340	33818340	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17896178	17896178	+	Silent	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOC2	64094	broad.mit.edu	37	6	169008863	169008863	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNHG10	283596	broad.mit.edu	37	14	95999947	95999947	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-10	100033447	broad.mit.edu	37	15	25432678	25432678	+	5'Flank	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-11	100033448	broad.mit.edu	37	15	25432736	25432736	+	5'Flank	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-13	100033450	broad.mit.edu	37	15	25436508	25436508	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNUPN	10073	broad.mit.edu	37	15	75909934	75909934	+	Intron	DEL	T	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108439158	108439158	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108589279	108589279	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106907472	106907472	+	Missense_Mutation	SNP	G	T	T	rs147155519		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16205507	16205507	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228882302	228882302	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOPL	339745	broad.mit.edu	37	2	139322555	139322555	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55656573	55656573	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53028861	53028861	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104129215	104129215	+	Intron	SNP	G	T	T	rs147189765	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104129313	104129313	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM	8027	broad.mit.edu	37	10	17747668	17747668	+	Silent	SNP	G	T	T	rs146234865		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK3	6788	broad.mit.edu	37	8	99468255	99468256	+	Intron	DNP	AC	TA	TA			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2A	9900	broad.mit.edu	37	1	149882197	149882197	+	Silent	SNP	G	A	A	rs148163632	byFrequency	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91835612	91835612	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113148396	113148396	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113251899	113251899	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152725528	152725528	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB1	10454	broad.mit.edu	37	22	39812898	39812898	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TATDN1	83940	broad.mit.edu	37	8	125534277	125534277	+	Intron	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCD	6904	broad.mit.edu	37	17	80828189	80828189	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115117165	115117165	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115120466	115120466	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114841688	114841688	+	Nonsense_Mutation	SNP	C	A	A	rs145365553		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL6	158931	broad.mit.edu	37	X	101396476	101396476	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB1	6921	broad.mit.edu	37	8	74872008	74872008	+	5'UTR	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20857777	20857777	+	Silent	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBR3	7049	broad.mit.edu	37	1	92327099	92327099	+	5'UTR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134034400	134034400	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138163266	138163266	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138330047	138330047	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156378554	156378554	+	Silent	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476416	120476416	+	Silent	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476829	120476830	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165697224	165697224	+	3'UTR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94797315	94797315	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPO	7112	broad.mit.edu	37	12	98921642	98921642	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3	7137	broad.mit.edu	37	19	55666266	55666266	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3	7137	broad.mit.edu	37	19	55666268	55666268	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175304875	175304875	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOMM70A	9868	broad.mit.edu	37	3	100091481	100091481	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPSD1	23430	broad.mit.edu	37	16	1308402	1308402	+	3'UTR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10942838	10942838	+	Intron	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10971410	10971410	+	Intron	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189026291	189026291	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14331009	14331010	+	Splice_Site	DNP	GG	TT	TT			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49693940	49693940	+	Intron	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142625166	142625166	+	Intron	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142479800	142479800	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43251119	43251119	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117632685	117632685	+	Missense_Mutation	SNP	G	T	T	rs145353452		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80720675	80720675	+	Splice_Site	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132237849	132237849	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	93315	93315	+	Silent	SNP	A	G	G	rs9794100		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBG2	27175	broad.mit.edu	37	17	40817597	40817597	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP2	10844	broad.mit.edu	37	10	135102477	135102477	+	Missense_Mutation	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP5	114791	broad.mit.edu	37	15	22848827	22848827	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXLNB	167838	broad.mit.edu	37	6	139609688	139609688	+	Nonsense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC9	10190	broad.mit.edu	37	2	99949717	99949717	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154241426	154241426	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2V2	7336	broad.mit.edu	37	8	48921115	48921115	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109937520	109937520	+	Silent	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1	29128	broad.mit.edu	37	19	4950700	4950700	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176295144	176295144	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USF2	7392	broad.mit.edu	37	19	35761708	35761708	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP12	219333	broad.mit.edu	37	13	27664334	27664334	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP22	23326	broad.mit.edu	37	17	20922486	20922486	+	Missense_Mutation	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9Y	8287	broad.mit.edu	37	Y	14850274	14850274	+	Intron	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43203354	43203354	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104993427	104993427	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49013025	49013025	+	IGR	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49103349	49103349	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49455094	49455094	+	IGR	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49455817	49455817	+	IGR	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55070193	55070193	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55838684	55838684	+	IGR	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55979281	55979281	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56099005	56099005	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82517277	82517277	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	28717554	28717554	+	IGR	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19468667	19468667	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59103247	59103247	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411809	19411809	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45357764	45357764	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22133093	22133093	+	IGR	SNP	C	T	T	rs138416287	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22566883	22566883	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22692530	22692530	+	IGR	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32391438	32391438	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34956651	34956651	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25309032	25309032	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232404	26232404	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	47022823	47022823	+	IGR	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	47022898	47022898	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75149175	75149175	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19960672	19960672	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54120535	54120535	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157029100	157029100	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157606464	157606464	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170338391	170338391	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203872855	203872855	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242223288	242223288	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247991829	247991829	+	IGR	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	249066249	249066249	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	73570704	73570704	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6195456	6195456	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17063572	17063572	+	IGR	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131051913	131051913	+	IGR	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81422147	81422147	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192874774	192874774	+	IGR	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74185900	74185900	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109710189	109710189	+	IGR	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	164187037	164187037	+	IGR	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	166586743	166586743	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	19815696	19815696	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3903998	3903998	+	IGR	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216465	64216465	+	IGR	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70255707	70255707	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70275226	70275227	+	IGR	DNP	CC	AA	AA			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144608785	144608785	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154871532	154871532	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165809389	165809389	+	IGR	SNP	A	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20305645	20305645	+	IGR	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	62597365	62597365	+	IGR	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9100649	9100649	+	IGR	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9100686	9100686	+	IGR	SNP	T	C	C	rs34674451		TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108634716	108634716	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56372570	56372570	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63563190	63563190	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63602729	63602729	+	IGR	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613748	84613748	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	20791851	20791851	+	IGR	SNP	T	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	49297501	49297501	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98636572	98636572	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109932698	109932698	+	IGR	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27608719	27608721	+	IGR	TNP	AGA	TAG	TAG			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29826371	29826371	+	IGR	SNP	G	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36013180	36013180	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	37636976	37636976	+	IGR	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314341	43314341	+	IGR	SNP	G	T	T	rs28464966	by1000genomes	TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84673725	84673725	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134814873	134814873	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136742999	136742999	+	IGR	DEL	A	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144713910	144713910	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79828125	79828125	+	IGR	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14089338	14089338	+	IGR	SNP	T	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28774289	28774289	+	IGR	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP7	6845	broad.mit.edu	37	X	155127963	155127963	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160393794	160393794	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100844746	100844746	+	Missense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98852817	98852817	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR12	55759	broad.mit.edu	37	2	203764280	203764280	+	Silent	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP1	8840	broad.mit.edu	37	8	134232987	134232987	+	Silent	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD1	23302	broad.mit.edu	37	17	6023481	6023481	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC2	80014	broad.mit.edu	37	4	184205516	184205516	+	Silent	SNP	A	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168100444	168100444	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPOT	11260	broad.mit.edu	37	12	64814179	64814179	+	Nonsense_Mutation	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YY2	404281	broad.mit.edu	37	X	21875364	21875364	+	Silent	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100388763	100388763	+	Intron	SNP	G	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP42	132625	broad.mit.edu	37	4	188924086	188924086	+	Missense_Mutation	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP82	284406	broad.mit.edu	37	19	36900799	36900799	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68250146	68250146	+	Frame_Shift_Del	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40389768	40389768	+	Intron	SNP	G	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF23	7571	broad.mit.edu	37	16	71482826	71482826	+	Missense_Mutation	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280D	54816	broad.mit.edu	37	15	56923982	56923982	+	Missense_Mutation	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF383	163087	broad.mit.edu	37	19	37721273	37721273	+	Intron	DEL	C	-	-			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182026435	182026435	+	Silent	SNP	C	G	G			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF713	349075	broad.mit.edu	37	7	56006546	56006546	+	Intron	SNP	A	C	C			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74564952	74564952	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22218673	22218673	+	Intron	SNP	C	A	A			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25033239	25033240	+	Intron	DNP	CC	GA	GA			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157895749	157895749	+	5'Flank	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142224134	142224134	+	Intron	SNP	C	T	T			TCGA-73-4659-01A-01D-1265-08	TCGA-73-4659-11A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
