Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2M	2	broad.mit.edu	37	12	9225217	9225217	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS	16	broad.mit.edu	37	16	70301455	70301455	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48319268	48319268	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48563770	48563770	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1049420	1049420	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66890459	66890459	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB10	23456	broad.mit.edu	37	1	229661863	229661864	+	Splice_Site	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87179246	87179246	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87056020	87056020	+	Intron	SNP	C	A	A	rs138467346	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20762679	20762679	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC11	85320	broad.mit.edu	37	16	48201284	48201284	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48172069	48172069	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC2	1244	broad.mit.edu	37	10	101557137	101557137	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48745744	48745744	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21958120	21958120	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	39994216	39994216	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44099310	44099310	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100605099	100605099	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179190116	179190116	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150555801	150555801	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89414627	89414627	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN3	9311	broad.mit.edu	37	7	150748263	150748263	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132056327	132056327	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA1	58	broad.mit.edu	37	1	229567267	229567267	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69375984	69375984	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236906299	236906299	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236906314	236906314	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236912547	236912547	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39442290	39442290	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39550216	39550216	+	Intron	SNP	T	A	A	rs76377389		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156936289	156936289	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156940551	156940551	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106471733	106471733	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107137208	107137208	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM8	101	broad.mit.edu	37	10	135083065	135083065	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33596156	33596156	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33641890	33641890	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100649325	100649325	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77393252	77393252	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS8	11095	broad.mit.edu	37	11	130275362	130275362	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18906824	18906824	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL3	57188	broad.mit.edu	37	15	84706518	84706518	+	Missense_Mutation	SNP	G	C	C	rs11857906	byFrequency;by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167778883	167778883	+	3'UTR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45742933	45742933	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7690791	7690791	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7690890	7690890	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7712952	7712952	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7757841	7757841	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7772958	7772958	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7804829	7804829	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88029353	88029353	+	Silent	SNP	C	T	T	rs146991025	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147919203	147919203	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT4	56895	broad.mit.edu	37	6	161567700	161567700	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGT	183	broad.mit.edu	37	1	230846486	230846486	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105405700	105405700	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105418921	105418921	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62288621	62288621	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSA2	130872	broad.mit.edu	37	2	61413941	61413941	+	3'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSP	51327	broad.mit.edu	37	16	31539839	31539839	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIDA	64853	broad.mit.edu	37	1	222843613	222843613	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77805970	77805970	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33046291	33046291	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP7	9465	broad.mit.edu	37	6	131571672	131571674	+	5'UTR	DEL	AGA	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91691630	91691630	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91729207	91729207	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134222393	134222393	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134254043	134254044	+	Intron	DNP	GC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243788289	243788289	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3B2	222	broad.mit.edu	37	11	67432005	67432005	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29551274	29551274	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73659341	73659341	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73679254	73679254	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMAC1	146861	broad.mit.edu	37	17	33520748	33520748	+	Nonsense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38457330	38457330	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112592168	112592168	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108334269	108334269	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41563755	41563755	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27306605	27306605	+	Silent	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD28	23243	broad.mit.edu	37	3	15749407	15749407	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14780072	14780072	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14784649	14784649	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14796169	14796169	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD34B	340120	broad.mit.edu	37	5	79855521	79855521	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD7	56311	broad.mit.edu	37	7	117876164	117876164	+	Nonsense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO10	55129	broad.mit.edu	37	3	43618386	43618386	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22272548	22272548	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83349905	83349905	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99109385	99109385	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOA1BP	128240	broad.mit.edu	37	1	156561835	156561835	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3G	60489	broad.mit.edu	37	22	39477286	39477286	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21241735	21241735	+	Intron	DEL	T	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL4	80832	broad.mit.edu	37	22	36587462	36587462	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58571945	58571945	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP4	361	broad.mit.edu	37	18	24445623	24445623	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33387171	33387171	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP1	55738	broad.mit.edu	37	20	61915135	61915135	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP2	84364	broad.mit.edu	37	11	47198363	47198363	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP15	55843	broad.mit.edu	37	2	143913138	143913138	+	Nonsense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP22	58504	broad.mit.edu	37	10	49790933	49790933	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130219647	130219647	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32562038	32562039	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11204576	11204576	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156910316	156910316	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF35	445328	broad.mit.edu	37	7	143884027	143884027	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPC1B	10095	broad.mit.edu	37	7	98985702	98985702	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119858333	119858333	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120053691	120053691	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31325023	31325023	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124413331	124413331	+	RNA	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF2	1386	broad.mit.edu	37	2	175976261	175976261	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14631190	14631190	+	Intron	SNP	A	G	G	rs145226135	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG10	83734	broad.mit.edu	37	5	81474444	81474444	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG16L1	55054	broad.mit.edu	37	2	234184287	234184287	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138864953	138864953	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193052754	193052754	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160134024	160134024	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1E1	529	broad.mit.edu	37	22	18102169	18102169	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77243539	77243539	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77286895	77286895	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50241647	50241647	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142224081	142224081	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR2	554	broad.mit.edu	37	X	153171805	153171805	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALNT2	148789	broad.mit.edu	37	1	235616306	235616306	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GAT1	27087	broad.mit.edu	37	11	134251899	134251899	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT4	338707	broad.mit.edu	37	11	376276	376276	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP2	10458	broad.mit.edu	37	17	79058779	79058779	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP2	10458	broad.mit.edu	37	17	79090043	79090043	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BATF2	116071	broad.mit.edu	37	11	64756757	64756757	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS1	582	broad.mit.edu	37	11	66287001	66287001	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L15	440603	broad.mit.edu	37	1	114424733	114424733	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCR	613	broad.mit.edu	37	22	23541548	23541548	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND4	389206	broad.mit.edu	37	4	42145827	42145827	+	Missense_Mutation	SNP	C	G	G	rs139053577	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BFSP2	8419	broad.mit.edu	37	3	133166080	133166080	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60548170	60548170	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIN1	274	broad.mit.edu	37	2	127834434	127834434	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32640490	32640490	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC8	112401	broad.mit.edu	37	19	53793627	53793627	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11403708	11403708	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP10	27302	broad.mit.edu	37	2	69098276	69098276	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55777710	55777710	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP3L	665	broad.mit.edu	37	8	26238284	26238284	+	5'Flank	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPHL	670	broad.mit.edu	37	6	3137679	3137680	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSG	682	broad.mit.edu	37	19	581345	581345	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93717010	93717010	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93784522	93784522	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD3	22903	broad.mit.edu	37	20	11904408	11904408	+	3'UTR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A2	10385	broad.mit.edu	37	6	26392494	26392494	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98743640	98743640	+	Silent	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf81	79949	broad.mit.edu	37	10	115536880	115536880	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf93	255352	broad.mit.edu	37	10	134754576	134754576	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76250491	76250491	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf42	160298	broad.mit.edu	37	11	6231320	6231320	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf54	28970	broad.mit.edu	37	11	93483475	93483475	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32134413	32134413	+	Missense_Mutation	SNP	G	T	T	rs138191568	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32137448	32137448	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf35	55196	broad.mit.edu	37	12	32138614	32138614	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf42	374470	broad.mit.edu	37	12	103872158	103872158	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf71	728858	broad.mit.edu	37	12	27235055	27235055	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf23	80209	broad.mit.edu	37	13	39586281	39586281	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf28	122258	broad.mit.edu	37	13	113088847	113088847	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf81	23587	broad.mit.edu	37	17	7155856	7155856	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13387641	13387641	+	5'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30476162	30476162	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51767208	51767208	+	5'UTR	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf116	79098	broad.mit.edu	37	1	207195296	207195296	+	3'UTR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179352571	179352571	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57202734	57202734	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf210	149466	broad.mit.edu	37	1	43748350	43748350	+	3'UTR	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34666336	34666336	+	Intron	DEL	T	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf107	388799	broad.mit.edu	37	20	55111182	55111182	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf117	140710	broad.mit.edu	37	20	35467903	35467903	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf186	149954	broad.mit.edu	37	20	31692679	31692679	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf29	55317	broad.mit.edu	37	20	3802818	3802818	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf85	128602	broad.mit.edu	37	20	56728509	56728509	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf85	128602	broad.mit.edu	37	20	56728613	56728613	+	Nonsense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45949888	45949888	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf43	51233	broad.mit.edu	37	22	23967031	23967031	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf63	130162	broad.mit.edu	37	2	55408941	55408941	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf67	151050	broad.mit.edu	37	2	210968932	210968932	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74040583	74040583	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf89	129293	broad.mit.edu	37	2	85051069	85051069	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf43	255798	broad.mit.edu	37	3	196236314	196236314	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41155230	41155230	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41199692	41199692	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf118	168090	broad.mit.edu	37	6	165715189	165715189	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31736514	31736514	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27898609	27898609	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39341300	39341300	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf119	375757	broad.mit.edu	37	9	131038432	131038432	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf85	138241	broad.mit.edu	37	9	74587548	74587548	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf98	158067	broad.mit.edu	37	9	135690074	135690074	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf98	158067	broad.mit.edu	37	9	135704074	135704075	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP2	51475	broad.mit.edu	37	11	67287517	67287517	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2613957	2613957	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2714981	2714981	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181745277	181745277	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49067761	49067761	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201009237	201009237	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1974442	1974442	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	2022273	2022273	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB1	782	broad.mit.edu	37	17	37347809	37347809	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18629792	18629792	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27446491	27446491	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND2	23066	broad.mit.edu	37	3	12856744	12856745	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CANX	821	broad.mit.edu	37	5	179151622	179151622	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55033542	55033542	+	Frame_Shift_Del	DEL	G	-	-	rs143052505		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER4	378807	broad.mit.edu	37	1	26526372	26526372	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFA2T3	863	broad.mit.edu	37	16	88951442	88951442	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33424517	33424517	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33444390	33444390	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC155	147872	broad.mit.edu	37	19	49898410	49898410	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC40	55036	broad.mit.edu	37	17	78013808	78013808	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119961410	119961410	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119978416	119978416	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC61	729440	broad.mit.edu	37	19	46506649	46506649	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32676475	32676475	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85627137	85627137	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC89	220388	broad.mit.edu	37	11	85396854	85396854	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6291926	6291926	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL3	6348	broad.mit.edu	37	17	34416038	34416038	+	Missense_Mutation	SNP	C	A	A	rs141182065		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD180	4064	broad.mit.edu	37	5	66479315	66479315	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158146806	158146806	+	5'Flank	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158146979	158146980	+	5'Flank	DNP	CG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200	4345	broad.mit.edu	37	3	112063765	112063765	+	Intron	SNP	G	T	T	rs115358071	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD207	50489	broad.mit.edu	37	2	71060191	71060191	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD248	57124	broad.mit.edu	37	11	66084402	66084402	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149963906	149963906	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPB	9578	broad.mit.edu	37	14	103442278	103442278	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPG	55561	broad.mit.edu	37	11	64606097	64606097	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174228182	174228182	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24487955	24487955	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883743	21883743	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883889	21883889	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83781970	83781970	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH15	1013	broad.mit.edu	37	16	89245971	89245971	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59217138	59217138	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73455252	73455252	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73500806	73500806	+	Intron	DEL	G	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31294121	31294121	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP1	51654	broad.mit.edu	37	20	31960575	31960575	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92244466	92244466	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK8	1024	broad.mit.edu	37	13	26957020	26957020	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX4	1046	broad.mit.edu	37	X	72667712	72667712	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM5	1048	broad.mit.edu	37	19	42213867	42213867	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2B	51032	broad.mit.edu	37	1	15812333	15812333	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA3A	10136	broad.mit.edu	37	1	22333950	22333950	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34854794	34854794	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34855077	34855077	+	Splice_Site	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34901701	34901701	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPP	401541	broad.mit.edu	37	9	95142109	95142109	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49085535	49085535	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES3	23491	broad.mit.edu	37	16	67007010	67007010	+	3'UTR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6185807	6185807	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61653994	61653994	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN1	1123	broad.mit.edu	37	2	175666637	175666637	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHORDC1	26973	broad.mit.edu	37	11	89944325	89944325	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184103044	184103044	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRD	8646	broad.mit.edu	37	3	184105191	184105191	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61978135	61978135	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNB4	1143	broad.mit.edu	37	15	78922232	78922232	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNG	1146	broad.mit.edu	37	2	233406047	233406047	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIT	11113	broad.mit.edu	37	12	120204875	120204875	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP2	23122	broad.mit.edu	37	3	33626403	33626403	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN4	1183	broad.mit.edu	37	X	10181855	10181855	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN7	1186	broad.mit.edu	37	16	1511526	1511526	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN9	9080	broad.mit.edu	37	16	3063924	3063924	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC1B	51266	broad.mit.edu	37	12	10149814	10149814	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4C	170482	broad.mit.edu	37	12	7893886	7893886	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122763329	122763329	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10543799	10543799	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10567780	10567780	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10567877	10567877	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62212449	62212449	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMTM5	116173	broad.mit.edu	37	14	23848599	23848599	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMYA5	202333	broad.mit.edu	37	5	79031289	79031289	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150909242	150909242	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA3	1261	broad.mit.edu	37	2	99008327	99008327	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57996667	57996667	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21609267	21609267	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58631550	58631550	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNR1	1268	broad.mit.edu	37	6	88854965	88854965	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205033308	205033308	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146471396	146471396	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39086814	39086814	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76513531	76513531	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76592360	76592360	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125282066	125282066	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COASY	80347	broad.mit.edu	37	17	40715990	40715990	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBRA1	25920	broad.mit.edu	37	9	140160977	140160977	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46083976	46083976	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46085876	46085876	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG5	10466	broad.mit.edu	37	7	106898859	106898859	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL17A1	1308	broad.mit.edu	37	10	105836256	105836256	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70886415	70886415	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94039100	94039100	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86200648	86200648	+	Splice_Site	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7412926	7412926	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107824026	107824026	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107924059	107924059	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107430488	107430488	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189915946	189915946	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10081828	10081828	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47541557	47541557	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ2	27235	broad.mit.edu	37	4	84185539	84185539	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	69006824	69006824	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7A2	1347	broad.mit.edu	37	6	75950955	75950955	+	Silent	SNP	C	A	A	rs139079443		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX7B2	170712	broad.mit.edu	37	4	46737239	46737239	+	5'UTR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130008265	130008265	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130008287	130008287	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB3	22849	broad.mit.edu	37	10	93896805	93896805	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131300383	131300383	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE9	151835	broad.mit.edu	37	3	9768831	9768831	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211542680	211542680	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145619449	145619449	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2776685	2776685	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP	1356	broad.mit.edu	37	3	148919898	148919898	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207780557	207780557	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREBBP	1387	broad.mit.edu	37	16	3779919	3779919	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2830854	2830854	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2830856	2830856	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3046423	3046423	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4645134	4645134	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34090212	34090212	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34158385	34158385	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34192017	34192017	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68018196	68018196	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39764020	39764020	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39783900	39783900	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80101247	80101247	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732329	11732329	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41474345	41474345	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16893485	16893485	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16980992	16980992	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17089683	17089683	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17171549	17171549	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43014777	43014777	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CX3CR1	1524	broad.mit.edu	37	3	39307550	39307550	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CX3CR1	1524	broad.mit.edu	37	3	39307625	39307625	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP2	646243	broad.mit.edu	37	15	22015825	22015825	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP3	440224	broad.mit.edu	37	18	14478156	14478156	+	RNA	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR2P1	3580	broad.mit.edu	37	2	218925443	218925443	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11A1	1583	broad.mit.edu	37	15	74654305	74654306	+	Intron	INS	-	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1A2	1544	broad.mit.edu	37	15	75043442	75043442	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96609673	96609673	+	Splice_Site	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A11	1579	broad.mit.edu	37	1	47395733	47395733	+	3'UTR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F3	4051	broad.mit.edu	37	19	15769135	15769135	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4V2	285440	broad.mit.edu	37	4	187130045	187130045	+	Missense_Mutation	SNP	G	C	C	rs58584561		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH2	9266	broad.mit.edu	37	19	48982510	48982510	+	3'UTR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTIP	9595	broad.mit.edu	37	2	158300456	158300456	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYYR1	116159	broad.mit.edu	37	21	27852829	27852829	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
D4S234E	27065	broad.mit.edu	37	4	4393355	4393355	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480745	57480745	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480986	57480986	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57528586	57528586	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57528724	57528724	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72134027	72134027	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK3	1613	broad.mit.edu	37	19	3964600	3964600	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBNL	28988	broad.mit.edu	37	7	44100527	44100527	+	3'UTR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8L1	139425	broad.mit.edu	37	X	27999166	27999166	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8	50717	broad.mit.edu	37	1	160251772	160251772	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	51057113	51057113	+	3'UTR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6644758	6644758	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779284	36779284	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52765609	52765609	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD2	23259	broad.mit.edu	37	8	38095615	38095615	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX19A	55308	broad.mit.edu	37	16	70364000	70364000	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX20	11218	broad.mit.edu	37	1	112298545	112298545	+	5'UTR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47838011	47838011	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169227859	169227859	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB104A	140596	broad.mit.edu	37	8	7698427	7698427	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1C	79958	broad.mit.edu	37	19	6477158	6477158	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC7	91614	broad.mit.edu	37	11	33047176	33047176	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB59	494513	broad.mit.edu	37	2	179318348	179318349	+	Splice_Site	INS	-	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14378256	14378256	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14797349	14797349	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96200587	96200587	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2A	23181	broad.mit.edu	37	21	47910612	47910612	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38126681	38126681	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83252706	83252706	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35060244	35060244	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35060397	35060397	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX1	1745	broad.mit.edu	37	2	172952791	172952791	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124390052	124390052	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32632526	32632526	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21654942	21654942	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76506406	76506406	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76506408	76506408	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38790760	38790760	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38919134	38919134	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11522884	11522884	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11778317	11778317	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC2	27000	broad.mit.edu	37	7	102966941	102966941	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65860568	65860569	+	Intron	INS	-	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAL4	10126	broad.mit.edu	37	22	39178760	39178760	+	5'UTR	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2B	58511	broad.mit.edu	37	1	84867844	84867844	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMBP	23268	broad.mit.edu	37	10	101656083	101656083	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129231440	129231440	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169472786	169472786	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25101272	25101273	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25209284	25209284	+	Missense_Mutation	SNP	G	T	T	rs139516143	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK7	85440	broad.mit.edu	37	1	63128718	63128719	+	Frame_Shift_Ins	INS	-	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK2	9046	broad.mit.edu	37	8	21766921	21766921	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37572692	37572692	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP1	1800	broad.mit.edu	37	16	89703053	89703053	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73220132	73220132	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27156067	27156067	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28736230	28736230	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28910016	28910016	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29052319	29052319	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29054422	29054422	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSN1	79980	broad.mit.edu	37	20	35396519	35396519	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56480481	56480481	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX4	23220	broad.mit.edu	37	11	58959801	58959801	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP7	1849	broad.mit.edu	37	3	52088240	52088240	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUT	1854	broad.mit.edu	37	15	48624414	48624414	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102472468	102472468	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103039461	103039461	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207569534	207569534	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96238287	96238287	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EAPP	55837	broad.mit.edu	37	14	34998672	34998672	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131666158	131666158	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM2	1842	broad.mit.edu	37	9	95258804	95258804	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2L	345930	broad.mit.edu	37	6	139159550	139159550	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78473904	78473904	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1G	1937	broad.mit.edu	37	11	62338368	62338368	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2K	29904	broad.mit.edu	37	16	22285097	22285097	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFNB1	1947	broad.mit.edu	37	X	68058452	68058452	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGF	1950	broad.mit.edu	37	4	110925712	110925712	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHMT2	10919	broad.mit.edu	37	6	31850426	31850426	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36384872	36384872	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184040602	184040602	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23705134	23705134	+	Intron	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79404923	79404923	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EME2	197342	broad.mit.edu	37	16	1825092	1825092	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14877104	14877104	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14762143	14762143	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR4P	326342	broad.mit.edu	37	19	6984945	6984945	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77705231	77705231	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTHD1	150350	broad.mit.edu	37	22	40283671	40283671	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5394781	5394781	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5397947	5397947	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4A	64097	broad.mit.edu	37	5	111531407	111531407	+	Splice_Site	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89445102	89445102	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89498255	89498255	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97185205	97185205	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142566119	142566119	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37866304	37866304	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212568770	212568770	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC3	51614	broad.mit.edu	37	20	34135189	34135189	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETFA	2108	broad.mit.edu	37	15	76587915	76587915	+	Intron	SNP	C	A	A	rs113453270		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157067890	157067890	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVC2	132884	broad.mit.edu	37	4	5624461	5624461	+	Silent	SNP	C	A	A	rs139936564	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXD3	54932	broad.mit.edu	37	9	140218082	140218083	+	Intron	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	132937786	132937786	+	5'Flank	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXTL1	2134	broad.mit.edu	37	1	26356821	26356822	+	Intron	INS	-	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133833930	133833930	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZR	7430	broad.mit.edu	37	6	159239267	159239267	+	5'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187201279	187201279	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6267130	6267130	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6318742	6318742	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2R	2149	broad.mit.edu	37	5	76029252	76029252	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57420778	57420778	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131520777	131520777	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129A	116496	broad.mit.edu	37	1	184764797	184764797	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM129C	199786	broad.mit.edu	37	19	17654231	17654231	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139209824	139209824	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175528581	175528581	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175535482	175535482	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6240128	6240128	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM166A	401565	broad.mit.edu	37	9	140139769	140139769	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15258120	15258120	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179A	165186	broad.mit.edu	37	2	29247336	29247336	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM179B	23116	broad.mit.edu	37	14	45540896	45540896	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188A	80013	broad.mit.edu	37	10	15880186	15880186	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A1	23359	broad.mit.edu	37	15	29527392	29527392	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21A	387680	broad.mit.edu	37	10	51864005	51864005	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM35A	54537	broad.mit.edu	37	10	88930215	88930215	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM53A	152877	broad.mit.edu	37	4	1643442	1643442	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067188	190067188	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11994652	11994652	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71E1	112703	broad.mit.edu	37	19	50979296	50979296	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166039591	166039591	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166039623	166039623	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCI	55215	broad.mit.edu	37	15	89811521	89811521	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45623018	45623018	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45668130	45668130	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FATE1	89885	broad.mit.edu	37	X	150891246	150891246	+	3'UTR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN7	129804	broad.mit.edu	37	2	112922542	112922542	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15935161	15935161	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO31	79791	broad.mit.edu	37	16	87377299	87377299	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO4	26272	broad.mit.edu	37	5	41927303	41927303	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR1A	2209	broad.mit.edu	37	1	149761697	149761697	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERD3L	222894	broad.mit.edu	37	7	19184470	19184470	+	3'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14922148	14922148	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF3	2248	broad.mit.edu	37	11	69631115	69631115	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF6	2251	broad.mit.edu	37	12	4554748	4554748	+	5'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR2	2263	broad.mit.edu	37	10	123239251	123239251	+	3'UTR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR4	2264	broad.mit.edu	37	5	176520201	176520201	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP15	23307	broad.mit.edu	37	9	116034588	116034588	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323313	152323313	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152327330	152327330	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152280798	152280798	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21904799	21904799	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLRT2	23768	broad.mit.edu	37	14	86089577	86089577	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3	2322	broad.mit.edu	37	13	28623625	28623625	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109275651	109275651	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114299490	114299490	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXRED1	55572	broad.mit.edu	37	11	126142944	126142944	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14776091	14776091	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39438599	39438599	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29632588	29632588	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD5	84978	broad.mit.edu	37	15	44198064	44198064	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37745562	37745562	+	Missense_Mutation	SNP	C	A	A	rs62640016	byFrequency;by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32811922	32811922	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44974165	44974165	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN1	6624	broad.mit.edu	37	7	5632887	5632887	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN3	29999	broad.mit.edu	37	7	127239488	127239488	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSHR	2492	broad.mit.edu	37	2	49190767	49190767	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTCD	10841	broad.mit.edu	37	21	47570482	47570482	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ1	24140	broad.mit.edu	37	X	48339578	48339578	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT8	2530	broad.mit.edu	37	14	66082969	66082969	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151336626	151336627	+	3'UTR	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47163293	47163293	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47427629	47427629	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26505872	26505872	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26508011	26508011	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26575391	26575391	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30819856	30819856	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST4	79690	broad.mit.edu	37	7	99757918	99757918	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22749403	22749404	+	Frame_Shift_Ins	INS	-	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCFC1	94104	broad.mit.edu	37	21	34117199	34117199	+	Silent	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44192063	44192063	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD4	220032	broad.mit.edu	37	11	76979748	76979748	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM2	84340	broad.mit.edu	37	5	74021326	74021326	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT5	2687	broad.mit.edu	37	22	24629658	24629658	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42465935	42465935	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42718314	42718314	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59610633	59610633	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIGYF2	26058	broad.mit.edu	37	2	233621023	233621023	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP4	55303	broad.mit.edu	37	7	150269316	150269316	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPR	2696	broad.mit.edu	37	19	46173932	46173932	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110390319	110390319	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA8	2703	broad.mit.edu	37	1	147381031	147381031	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK3P	2713	broad.mit.edu	37	4	166199558	166199558	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GK	2710	broad.mit.edu	37	X	30747008	30747008	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA4	441509	broad.mit.edu	37	X	102962361	102962361	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT8D2	83468	broad.mit.edu	37	12	104393245	104393245	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLTSCR1	29998	broad.mit.edu	37	19	48205578	48205578	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYAT	10249	broad.mit.edu	37	11	58480262	58480262	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYAT	10249	broad.mit.edu	37	11	58483117	58483117	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPR	2766	broad.mit.edu	37	6	16274679	16274679	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57415891	57415891	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAT2	2780	broad.mit.edu	37	1	110146652	110146652	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB1L	54584	broad.mit.edu	37	22	19776217	19776217	+	3'UTR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG12	55970	broad.mit.edu	37	1	68173367	68173367	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8C	729786	broad.mit.edu	37	15	20777882	20777882	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167728113	167728113	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167764826	167764826	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLPH3L	55204	broad.mit.edu	37	1	150636173	150636173	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD2	2820	broad.mit.edu	37	2	157407299	157407299	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176622818	176622818	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR107	57720	broad.mit.edu	37	9	132889670	132889670	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135443783	135443783	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134940851	134940851	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22422577	22422577	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131466608	131466608	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR133	283383	broad.mit.edu	37	12	131490582	131490582	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25886724	25886724	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR174	84636	broad.mit.edu	37	X	78426763	78426763	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR176	11245	broad.mit.edu	37	15	40093898	40093898	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR26	2849	broad.mit.edu	37	10	125426441	125426441	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR50	9248	broad.mit.edu	37	X	150345292	150345292	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR50	9248	broad.mit.edu	37	X	150349269	150349269	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPSM2	29899	broad.mit.edu	37	1	109446661	109446661	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPX5	2880	broad.mit.edu	37	6	28493766	28493766	+	5'Flank	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123469444	123469444	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	30961211	30961211	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31045363	31045363	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	101878819	101878819	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102511928	102511928	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37356572	37356572	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858360	9858360	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104335671	104335671	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104499662	104499662	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM2	2912	broad.mit.edu	37	3	51752241	51752241	+	3'UTR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM3	2913	broad.mit.edu	37	7	86415918	86415918	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178415912	178415912	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126544245	126544245	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG2	83903	broad.mit.edu	37	17	3629369	3629369	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG2	83903	broad.mit.edu	37	17	3629701	3629701	+	3'UTR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM5	2949	broad.mit.edu	37	1	110260114	110260114	+	3'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2IRD1	9569	broad.mit.edu	37	7	74004251	74004251	+	Nonsense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBL2	375513	broad.mit.edu	37	6	58287734	58287734	+	5'Flank	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21497166	21497166	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMK	3003	broad.mit.edu	37	5	54326301	54326301	+	Silent	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMM	3004	broad.mit.edu	37	19	547500	547500	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HABP2	3026	broad.mit.edu	37	10	115337733	115337733	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO1	54363	broad.mit.edu	37	20	7866244	7866244	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR2	84868	broad.mit.edu	37	5	156515818	156515818	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBE1	3046	broad.mit.edu	37	11	5290650	5290650	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42159947	42159947	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41052496	41052496	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43447346	43447346	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28375478	28375478	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28413456	28413456	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEY1	23462	broad.mit.edu	37	8	80679576	80679576	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFE2	148738	broad.mit.edu	37	1	145416654	145416654	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81340889	81340889	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81381537	81381537	+	Missense_Mutation	SNP	T	C	C	rs73381183	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717255	222717255	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIF3A	64344	broad.mit.edu	37	19	46808501	46808501	+	Splice_Site	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK1	204851	broad.mit.edu	37	1	114500621	114500621	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1T	3010	broad.mit.edu	37	6	26107887	26107887	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BD	3017	broad.mit.edu	37	6	26157397	26157397	+	5'Flank	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3H	8357	broad.mit.edu	37	6	27775977	27775977	+	5'Flank	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4E	8367	broad.mit.edu	37	6	26204885	26204885	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143080987	143080987	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK1	3098	broad.mit.edu	37	10	71103616	71103616	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK2	3099	broad.mit.edu	37	2	75108998	75108998	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPF	3185	broad.mit.edu	37	10	43882738	43882738	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA9	3205	broad.mit.edu	37	7	27203226	27203226	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB9	3219	broad.mit.edu	37	17	46703290	46703290	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD12	3238	broad.mit.edu	37	2	176964621	176964621	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18316715	18316715	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100995254	100995254	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186390690	186390690	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152191355	152191355	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148842515	148842515	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA7	3311	broad.mit.edu	37	1	161576894	161576894	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA7	3311	broad.mit.edu	37	1	161577441	161577441	+	3'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22183691	22183691	+	Intron	SNP	G	A	A	rs111323019		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3E	285242	broad.mit.edu	37	3	183818183	183818183	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTRA3	94031	broad.mit.edu	37	4	8306011	8306011	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3176790	3176790	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI16	3428	broad.mit.edu	37	1	158970048	158970048	+	5'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFI6	2537	broad.mit.edu	37	1	27994737	27994737	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT52	51098	broad.mit.edu	37	20	42232906	42232906	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT52	51098	broad.mit.edu	37	20	42249677	42249677	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP3	10643	broad.mit.edu	37	7	23390906	23390906	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL19	29949	broad.mit.edu	37	1	207010478	207010478	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F5	26525	broad.mit.edu	37	2	113819695	113819695	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37524962	37524962	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1460574	1460574	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILF2	3608	broad.mit.edu	37	1	153643478	153643478	+	5'UTR	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100950072	100950072	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5B	3633	broad.mit.edu	37	1	38352397	38352397	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPPL1	3636	broad.mit.edu	37	11	71948810	71948810	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG2	51141	broad.mit.edu	37	2	118864367	118864367	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG2	51141	broad.mit.edu	37	2	118866015	118866015	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7184418	7184418	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1517559	1517560	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1536898	1536898	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	60003898	60003898	+	Silent	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153744470	153744470	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44425990	44425990	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO5	3843	broad.mit.edu	37	13	98622116	98622117	+	Intron	DNP	CC	AG	AG			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9455345	9455345	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201827504	201827504	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO9	55705	broad.mit.edu	37	1	201843470	201843470	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237415979	237415979	+	5'UTR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCF1	132141	broad.mit.edu	37	3	51937335	51937335	+	5'UTR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC1	9922	broad.mit.edu	37	3	12983333	12983333	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123150169	123150169	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2747804	2747804	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2749627	2749627	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52223596	52223596	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54802718	54802718	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA6	3655	broad.mit.edu	37	2	173352193	173352193	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15725835	15725835	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31435763	31435763	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3632728	3632728	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB8	3696	broad.mit.edu	37	7	20421493	20421493	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7658105	7658105	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5	80760	broad.mit.edu	37	10	7683889	7683889	+	Splice_Site	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPA	3704	broad.mit.edu	37	20	3199340	3199340	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26596390	26596390	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVL	3713	broad.mit.edu	37	1	152883610	152883610	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65300289	65300289	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6051523	6051523	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27066364	27066364	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42132588	42132588	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMY	133746	broad.mit.edu	37	5	78612080	78612080	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30032523	30032523	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40327531	40327531	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN4	3783	broad.mit.edu	37	19	44273904	44273904	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ4	9132	broad.mit.edu	37	1	41303297	41303297	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138650394	138650394	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138670486	138670486	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138671082	138671082	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215793486	215793486	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26964909	26964910	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0125	9834	broad.mit.edu	37	14	106368626	106368626	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0391	9692	broad.mit.edu	37	14	35739454	35739454	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0415	9907	broad.mit.edu	37	7	4830249	4830249	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0427	9811	broad.mit.edu	37	18	46288103	46288103	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43890055	43890055	+	5'UTR	SNP	C	T	T	rs884257		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43896082	43896082	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8783844	8783844	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1045	23349	broad.mit.edu	37	9	34972183	34972183	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1257	57501	broad.mit.edu	37	3	128697124	128697124	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324L	222223	broad.mit.edu	37	7	86570733	86570733	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1324	57535	broad.mit.edu	37	1	109704453	109704453	+	Intron	DEL	G	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1903573	1903573	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF11	3832	broad.mit.edu	37	10	94388606	94388606	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200530082	200530082	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF19	124602	broad.mit.edu	37	17	72350426	72350426	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1C	10749	broad.mit.edu	37	17	4906198	4906198	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC3	3801	broad.mit.edu	37	16	57804605	57804605	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55266612	55266612	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF17	128209	broad.mit.edu	37	1	44569891	44569891	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC10	23008	broad.mit.edu	37	7	129761849	129761849	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL12	59349	broad.mit.edu	37	1	202880143	202880143	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL12	59349	broad.mit.edu	37	1	202887329	202887329	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL20	27252	broad.mit.edu	37	1	173726252	173726252	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL38	340359	broad.mit.edu	37	8	124664095	124664095	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK14	43847	broad.mit.edu	37	19	51582063	51582063	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51331126	51331126	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123103166	123103166	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152732910	152732911	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT19	3880	broad.mit.edu	37	17	39684318	39684318	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38925158	38925158	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38948732	38948732	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39597003	39597003	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53004427	53004427	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53166404	53166404	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT77	374454	broad.mit.edu	37	12	53091364	53091364	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT9	3857	broad.mit.edu	37	17	39726341	39726341	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253288	32253288	+	3'UTR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-6	440023	broad.mit.edu	37	11	1718521	1718521	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-3	337968	broad.mit.edu	37	21	31964947	31964947	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42143696	42143696	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129663727	129663727	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112522940	112522940	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60887174	60887174	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL2	55915	broad.mit.edu	37	7	55433941	55433941	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL3	347404	broad.mit.edu	37	X	37526534	37526535	+	Splice_Site	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4B	23185	broad.mit.edu	37	10	931760	931760	+	5'Flank	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS2	23395	broad.mit.edu	37	3	45500206	45500206	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	149983390	149983390	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	150001196	150001196	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCA5L	150082	broad.mit.edu	37	21	40800015	40800015	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE3B	353143	broad.mit.edu	37	1	152586301	152586301	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN6	158062	broad.mit.edu	37	9	139639197	139639197	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16513703	16513703	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHC	3948	broad.mit.edu	37	11	18434318	18434318	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI2	55203	broad.mit.edu	37	4	25005746	25005746	+	Missense_Mutation	SNP	C	T	T	rs149130054		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI3	203190	broad.mit.edu	37	8	22005941	22005941	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71953410	71953410	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202245436	202245436	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHCGR	3973	broad.mit.edu	37	2	48935983	48935983	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL5	222662	broad.mit.edu	37	6	35773838	35773838	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX2	9355	broad.mit.edu	37	9	126777305	126777305	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA2	11027	broad.mit.edu	37	19	55087626	55087626	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55143585	55143585	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55176537	55176537	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54760611	54760611	+	Nonsense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPN	643418	broad.mit.edu	37	10	90534339	90534339	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2	10960	broad.mit.edu	37	5	176778124	176778124	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70409155	70409155	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMLN	89782	broad.mit.edu	37	3	197703559	197703559	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO3	55885	broad.mit.edu	37	12	16757970	16757970	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100128542	100128542	broad.mit.edu	37	7	150444683	150444683	+	5'Flank	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153328	153328	broad.mit.edu	37	5	135178167	135178167	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148346485	148346485	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78211609	78211609	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937785	21937785	+	RNA	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937995	21937995	+	RNA	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91809372	91809372	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22298051	22298051	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC729234	729234	broad.mit.edu	37	2	96685381	96685381	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22937303	22937303	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161085191	161085191	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPCAT3	10162	broad.mit.edu	37	12	7087411	7087411	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62903472	62903472	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN2	9663	broad.mit.edu	37	18	2923837	2923837	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN2	9663	broad.mit.edu	37	18	2925420	2925420	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99762233	99762233	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT1	26103	broad.mit.edu	37	10	85993978	85993978	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP12	29967	broad.mit.edu	37	8	105503299	105503299	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC15	131578	broad.mit.edu	37	3	194081122	194081122	+	Silent	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76371892	76371892	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC47	57470	broad.mit.edu	37	1	3712397	3712397	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70291429	70291429	+	Splice_Site	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529979	80529979	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYSMD4	145748	broad.mit.edu	37	15	100269825	100269825	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235969542	235969542	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL2	119180	broad.mit.edu	37	10	30901092	30901092	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20110354	20110354	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2255624	2255624	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2259101	2259101	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2260696	2260696	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADCAM1	8174	broad.mit.edu	37	19	498565	498565	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADCAM1	8174	broad.mit.edu	37	19	498569	498569	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47330186	47330186	+	Silent	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA12	4111	broad.mit.edu	37	X	151900674	151900674	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA5	4104	broad.mit.edu	37	X	151283559	151283559	+	3'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141290686	141290686	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65367627	65367627	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65267694	65267694	+	RNA	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAL	4118	broad.mit.edu	37	2	95713751	95713751	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109051926	109051926	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B2	23324	broad.mit.edu	37	4	6578375	6578375	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172944060	172944060	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K6	5608	broad.mit.edu	37	17	67537936	67537936	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K7	6885	broad.mit.edu	37	6	91257081	91257081	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7D1	55700	broad.mit.edu	37	1	36641784	36641784	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48252469	48252469	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK4	5596	broad.mit.edu	37	18	48252472	48252472	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165109610	165109611	+	Intron	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH8	220972	broad.mit.edu	37	10	45959583	45959583	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCKSL1	65108	broad.mit.edu	37	1	32800178	32800178	+	3'UTR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119739773	119739773	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220805550	220805550	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63672574	63672574	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18233413	18233413	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3784052	3784052	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATK	4145	broad.mit.edu	37	19	3785136	3785136	+	5'UTR	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBP	4155	broad.mit.edu	37	18	74701954	74701954	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84103405	84103406	+	Intron	DNP	GG	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54823640	54823641	+	5'Flank	DEL	CT	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCAM	4162	broad.mit.edu	37	11	119183414	119183415	+	Intron	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC1	56922	broad.mit.edu	37	3	182775145	182775145	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70948586	70948586	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113744165	113744165	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138708751	138708751	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47669808	47669808	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47669822	47669822	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168830606	168830606	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MECOM	2122	broad.mit.edu	37	3	168830608	168830608	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED17	9440	broad.mit.edu	37	11	93528312	93528313	+	Intron	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126783246	126783246	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METAP1	23173	broad.mit.edu	37	4	99962203	99962203	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	41988781	41988781	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL2	79778	broad.mit.edu	37	7	1474755	1474755	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR105-1	406897	broad.mit.edu	37	X	151560719	151560719	+	RNA	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR365-1	100126355	broad.mit.edu	37	16	14403171	14403171	+	RNA	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR543	100126335	broad.mit.edu	37	14	101498348	101498348	+	RNA	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129904199	129904199	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129913427	129913427	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23812450	23812450	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151877045	151877045	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT6	4302	broad.mit.edu	37	17	36865313	36865313	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLXIPL	51085	broad.mit.edu	37	7	73008567	73008567	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP19	4327	broad.mit.edu	37	12	56236013	56236013	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158811874	158811874	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC4	79710	broad.mit.edu	37	X	106199661	106199661	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50591676	50591676	+	Intron	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRAP	56246	broad.mit.edu	37	21	33671311	33671312	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX4	117196	broad.mit.edu	37	11	18194989	18194989	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL47	57129	broad.mit.edu	37	3	179322481	179322481	+	5'Flank	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS15	64960	broad.mit.edu	37	1	36921783	36921783	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS18B	28973	broad.mit.edu	37	6	30593315	30593315	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS30	10884	broad.mit.edu	37	5	44814835	44814835	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60565735	60565735	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59828748	59828749	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72756411	72756411	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121483118	121483118	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR7	9108	broad.mit.edu	37	8	17188770	17188770	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63526090	63526090	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11297961	11297961	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9062533	9062533	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1075905	1075905	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC2	4583	broad.mit.edu	37	11	1081575	1081575	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102008386	102008386	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCT1	80177	broad.mit.edu	37	6	153019179	153019179	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10231408	10231408	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108188944	108188944	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10419268	10419268	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10427854	10427854	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10369442	10369442	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33574881	33574881	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33578006	33578006	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884905	23884905	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23894191	23894191	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL7	58498	broad.mit.edu	37	7	44180373	44180373	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30421409	30421409	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYNN	55892	broad.mit.edu	37	3	169502546	169502546	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16681910	16681910	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47429071	47429071	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76565044	76565044	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76867955	76867955	+	Missense_Mutation	SNP	G	A	A	rs111033283		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666801	12666801	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2007299	2007299	+	Missense_Mutation	SNP	C	A	A	rs142466938	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2054306	2054306	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2088500	2088500	+	Intron	SNP	C	A	A	rs147850980	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOZ3	91977	broad.mit.edu	37	5	150042617	150042617	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1855382	1855382	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62839102	62839102	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62854555	62854555	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NACAP1	83955	broad.mit.edu	37	8	102381147	102381147	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L3	4675	broad.mit.edu	37	X	92926929	92926929	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78445054	78445054	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145293563	145293563	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145557010	145557010	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145765538	145765538	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16893822	16893822	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16918201	16918201	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCALD	83988	broad.mit.edu	37	8	102884009	102884009	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM2	4685	broad.mit.edu	37	21	22790677	22790677	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6640523	6640523	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD3	23310	broad.mit.edu	37	11	134063836	134063836	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPH	23397	broad.mit.edu	37	2	97007797	97007797	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCCRP1	342897	broad.mit.edu	37	19	39689968	39689968	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1	10787	broad.mit.edu	37	2	183821071	183821071	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46275899	46275899	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA7	135112	broad.mit.edu	37	6	126136629	126136629	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR1	9611	broad.mit.edu	37	17	16049783	16049783	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR1	9437	broad.mit.edu	37	19	55417575	55417575	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00164	554226	broad.mit.edu	37	2	133014513	133014513	+	Intron	SNP	G	A	A	rs77333908	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73341379	73341379	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDC80	10403	broad.mit.edu	37	18	2589995	2589995	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST2	8509	broad.mit.edu	37	10	75563708	75563708	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21178712	21178712	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152466583	152466584	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152470891	152470891	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFL	4747	broad.mit.edu	37	8	24813237	24813237	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	44902844	44902844	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156640299	156640299	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22140253	22140253	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22143142	22143142	+	RNA	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22143306	22143306	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29527486	29527486	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFAT5	10725	broad.mit.edu	37	16	69693517	69693517	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77193396	77193396	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFRKB	4798	broad.mit.edu	37	11	129754866	129754866	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233745956	233745956	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233839311	233839311	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGLY1	55768	broad.mit.edu	37	3	25791399	25791399	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25507047	25507047	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL1	152519	broad.mit.edu	37	4	48037822	48037822	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL3	57185	broad.mit.edu	37	1	24786969	24786969	+	Splice_Site	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL4	348938	broad.mit.edu	37	5	156895745	156895745	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36995920	36995920	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKRF	55922	broad.mit.edu	37	X	118723347	118723347	+	Missense_Mutation	SNP	G	T	T	rs144536074		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX2-2	4821	broad.mit.edu	37	20	21493166	21493166	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP11	204801	broad.mit.edu	37	19	56319360	56319360	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56419176	56419176	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5456666	5456666	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247582216	247582216	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587692	247587692	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56379097	56379098	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56544274	56544274	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMT2	9397	broad.mit.edu	37	10	15213359	15213359	+	5'Flank	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	26918112	26918112	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155728268	155728268	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89059881	89059881	+	3'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP1	4867	broad.mit.edu	37	2	110901996	110901996	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36330257	36330257	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32712584	32712584	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR3	4883	broad.mit.edu	37	5	32780966	32780966	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY5R	4889	broad.mit.edu	37	4	164271597	164271597	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY	4852	broad.mit.edu	37	7	24329306	24329306	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115381984	115381984	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107838573	107838573	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52260317	52260317	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRSN1	140767	broad.mit.edu	37	6	24145935	24145935	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50149448	50149448	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50724546	50724546	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50847242	50847242	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSDHL	50814	broad.mit.edu	37	X	152018791	152018791	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6602676	6602676	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTN4	59277	broad.mit.edu	37	12	96131706	96131706	+	Missense_Mutation	SNP	C	G	G	rs140109505		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156834455	156834455	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK2	4915	broad.mit.edu	37	9	87285692	87285692	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88576157	88576157	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110255340	110255340	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110255552	110255552	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229594020	229594020	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37305006	37305006	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135272444	135272444	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62568983	62568983	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102334690	102334690	+	Splice_Site	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101817597	101817597	+	RNA	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS3	4940	broad.mit.edu	37	12	113384832	113384832	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228399598	228399598	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSL1	23363	broad.mit.edu	37	2	220424202	220424202	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133036911	133036912	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCIAD1	54940	broad.mit.edu	37	4	48835352	48835352	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167379664	167379664	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167589624	167589624	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183603130	183603130	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50959877	50959877	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6891751	6891751	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6865488	6865488	+	5'Flank	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G2	26534	broad.mit.edu	37	14	22102704	22102704	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123893682	123893682	+	5'Flank	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G9	219870	broad.mit.edu	37	11	123894352	123894352	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Q1	219960	broad.mit.edu	37	11	57996359	57996359	+	5'Flank	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248004727	248004727	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835474	247835474	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1L1	26737	broad.mit.edu	37	9	125424827	125424827	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247614514	247614514	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247614915	247614915	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247751975	247751975	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769494	247769494	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247357	248247357	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248247877	248247877	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224682	248224682	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616085	248616085	+	5'Flank	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T8	343172	broad.mit.edu	37	1	248084206	248084206	+	5'Flank	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135885	55135885	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4B1	119765	broad.mit.edu	37	11	48238557	48238557	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55321892	55321892	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515322	51515322	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433228	55433228	+	Frame_Shift_Del	DEL	T	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D11	219986	broad.mit.edu	37	11	59271729	59271729	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D9	390199	broad.mit.edu	37	11	59282749	59282749	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D9	390199	broad.mit.edu	37	11	59283102	59283102	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4F6	390648	broad.mit.edu	37	15	102345921	102345921	+	5'Flank	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20389628	20389628	+	Missense_Mutation	SNP	C	A	A	rs151012539	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20389640	20389640	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22368867	22368867	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20296000	20296000	+	Missense_Mutation	SNP	C	A	A	rs2873667		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413947	22413947	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N4	283694	broad.mit.edu	37	15	22332696	22332696	+	5'UTR	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5462856	5462856	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52K2	119774	broad.mit.edu	37	11	4470615	4470615	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52L1	338751	broad.mit.edu	37	11	6008214	6008214	+	5'UTR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AC2	81050	broad.mit.edu	37	3	97806523	97806523	+	Silent	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B21	219968	broad.mit.edu	37	11	58275014	58275014	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D18	219438	broad.mit.edu	37	11	55588013	55588013	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H1	26341	broad.mit.edu	37	3	97852015	97852015	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K2	402135	broad.mit.edu	37	3	98217388	98217388	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M8	219484	broad.mit.edu	37	11	56258013	56258013	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T1	390155	broad.mit.edu	37	11	56043784	56043784	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6B2	389090	broad.mit.edu	37	2	240969859	240969859	+	5'UTR	DEL	G	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158669516	158669516	+	Silent	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G1	125962	broad.mit.edu	37	19	9226066	9226066	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D2	283160	broad.mit.edu	37	11	124189574	124189574	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56127836	56127836	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904398	55904398	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8S1	341568	broad.mit.edu	37	12	48921694	48921694	+	Splice_Site	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A4	130075	broad.mit.edu	37	7	141618891	141618891	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC4L	5000	broad.mit.edu	37	2	148693386	148693386	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSGIN2	734	broad.mit.edu	37	8	90926858	90926858	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21709214	21709214	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP1	133060	broad.mit.edu	37	4	4190608	4190608	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP3	347741	broad.mit.edu	37	17	72937670	72937670	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	32058769	32058769	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1P2	728773	broad.mit.edu	37	2	147346678	147346678	+	3'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1	26986	broad.mit.edu	37	8	101721762	101721762	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17556725	17556725	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI6	353238	broad.mit.edu	37	1	17721722	17721723	+	Intron	DEL	GA	-	-	rs141096512		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAF1	54623	broad.mit.edu	37	19	39876663	39876663	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE3	139793	broad.mit.edu	37	X	55289668	55289668	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN2	9924	broad.mit.edu	37	12	56720556	56720556	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6739804	6739804	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118950340	118950340	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51077590	51077590	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51532096	51532096	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162864322	162864322	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150780294	150780294	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102546796	102546796	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBLD	64081	broad.mit.edu	37	10	70056647	70056647	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873528	91873528	+	Silent	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55582281	55582281	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55944963	55944963	+	Silent	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56106133	56106133	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207235	58207235	+	Silent	SNP	C	T	T	rs139267359		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB12	56124	broad.mit.edu	37	5	140590281	140590281	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503842	140503842	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140712360	140712360	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140724427	140724427	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCM1	5108	broad.mit.edu	37	8	17843687	17843687	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD2	55251	broad.mit.edu	37	20	62904645	62904645	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233120019	233120019	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233353746	233353746	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78547266	78547266	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD1LG2	80380	broad.mit.edu	37	9	5570146	5570146	+	3'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178562051	178562051	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178592285	178592285	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144915415	144915415	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149501587	149501587	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK1	5163	broad.mit.edu	37	2	173435551	173435551	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK3	5165	broad.mit.edu	37	X	24551979	24551979	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32072176	32072176	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57328349	57328349	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57344557	57344557	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI2	57161	broad.mit.edu	37	14	56755250	56755250	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI2	57161	broad.mit.edu	37	14	56763925	56763925	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PENK	5179	broad.mit.edu	37	8	57353894	57353894	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179576808	179576808	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFAS	5198	broad.mit.edu	37	17	8169551	8169551	+	Splice_Site	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGA5	5222	broad.mit.edu	37	11	61018548	61018548	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF21A	51317	broad.mit.edu	37	11	45991437	45991437	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF3	23469	broad.mit.edu	37	6	64410429	64410429	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB1	23187	broad.mit.edu	37	11	118485197	118485197	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHPT1	29085	broad.mit.edu	37	9	139745155	139745155	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73468017	73468017	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106508033	106508033	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1C	23396	broad.mit.edu	37	19	3656388	3656388	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47882629	47882629	+	Silent	SNP	C	T	T	rs148252365		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47930375	47930375	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKMYT1	9088	broad.mit.edu	37	16	3026606	3026606	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131467832	131467832	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125267998	125267998	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G6	8398	broad.mit.edu	37	22	38524131	38524131	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAA	9373	broad.mit.edu	37	9	26928119	26928119	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28776005	28776006	+	Intron	DNP	CT	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28825818	28825818	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9360751	9360751	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9368137	9368137	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9459499	9459499	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81914475	81914475	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD3	345557	broad.mit.edu	37	5	41382476	41382476	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242383207	242383207	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132109886	132109886	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4511819	4511819	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4517573	4517573	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12024007	12024007	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103041825	103041825	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR4	57088	broad.mit.edu	37	3	145912119	145912119	+	3'UTR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50727320	50727320	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72153084	72153084	+	3'UTR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA8	50640	broad.mit.edu	37	7	108155042	108155042	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84537353	84537353	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89865046	89865046	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2B	5431	broad.mit.edu	37	4	57887234	57887234	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2E	5434	broad.mit.edu	37	19	1091841	1091841	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53104131	53104131	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38172919	38172919	+	5'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEC	388468	broad.mit.edu	37	18	14523540	14523540	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18807174	18807174	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIB	5479	broad.mit.edu	37	15	64454073	64454074	+	Intron	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4937127	4937127	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1A	5494	broad.mit.edu	37	14	60712664	60712664	+	5'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37531302	37531302	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54976673	54976673	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1C	151242	broad.mit.edu	37	2	182826813	182826813	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113518241	113518241	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3D	5509	broad.mit.edu	37	20	58514485	58514485	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5B	5526	broad.mit.edu	37	11	64694315	64694315	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF2	65122	broad.mit.edu	37	1	12921365	12921365	+	Missense_Mutation	SNP	A	T	T	rs143524748	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB1	5542	broad.mit.edu	37	12	11507448	11507448	+	Intron	DEL	T	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM7	11105	broad.mit.edu	37	16	90127890	90127890	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM8	56978	broad.mit.edu	37	4	81121284	81121284	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23509248	23509248	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62192981	62192981	+	Missense_Mutation	SNP	C	A	A	rs143065747		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62200859	62200859	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24197011	24197011	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54394899	54394899	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48731854	48731854	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48772259	48772259	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35065590	35065590	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF18	8559	broad.mit.edu	37	10	13628924	13628924	+	5'Flank	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120022181	120022181	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS16	10279	broad.mit.edu	37	6	27222627	27222627	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10387130	10387130	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS55	203074	broad.mit.edu	37	8	10396253	10396253	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE2	158471	broad.mit.edu	37	9	79328486	79328486	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN1	5663	broad.mit.edu	37	14	73686110	73686110	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43448295	43448295	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43520230	43520230	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA6	5687	broad.mit.edu	37	14	35777229	35777229	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCRA	171558	broad.mit.edu	37	6	42893278	42893278	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTHLH	5744	broad.mit.edu	37	12	28114797	28114797	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214557623	214557623	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71016262	71016262	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198608361	198608361	+	5'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198668678	198668678	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	9090952	9090952	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55707830	55707830	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55716615	55716615	+	Intron	DEL	G	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15652394	15652394	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40714370	40714370	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41306419	41306419	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29587414	29587414	+	Silent	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121624102	121624102	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121637825	121637825	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31532281	31532281	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7	54517	broad.mit.edu	37	7	105111238	105111239	+	Frame_Shift_Ins	INS	-	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52252054	52252054	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52387734	52387734	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1652063	1652063	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1653374	1653374	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58368341	58368341	+	Missense_Mutation	SNP	A	G	G	rs144000489		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58385174	58385174	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158908969	158908969	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158911812	158911812	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ProSAPiP1	9762	broad.mit.edu	37	20	3146025	3146025	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM1	23518	broad.mit.edu	37	2	136362452	136362452	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB1B	81876	broad.mit.edu	37	11	66039815	66039815	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82705223	82705223	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17697591	17697591	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L2	23132	broad.mit.edu	37	3	51696623	51696624	+	Missense_Mutation	DNP	CA	AC	AC			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34687102	34687102	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20610186	20610186	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85799963	85799963	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109381301	109381301	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109388295	109388295	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113546081	113546081	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178111085	178111085	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF2	9770	broad.mit.edu	37	20	4776565	4776565	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48934152	48934152	+	Splice_Site	DEL	G	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM15	64783	broad.mit.edu	37	1	110882839	110882839	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM24	221662	broad.mit.edu	37	6	17283081	17283081	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145648949	145648949	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMXL2	27288	broad.mit.edu	37	11	7110638	7110638	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48389931	48389931	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR1	23186	broad.mit.edu	37	14	103187709	103187709	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385648	79385648	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385781	79385781	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103234627	103234627	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8415633	8415633	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC1	5981	broad.mit.edu	37	4	39310388	39310388	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX5	5993	broad.mit.edu	37	1	151314767	151314767	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117244206	117244206	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX7	64864	broad.mit.edu	37	15	56390279	56390279	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RG9MTD1	54931	broad.mit.edu	37	3	101284693	101284693	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3441279	3441279	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS1	5996	broad.mit.edu	37	1	192545118	192545118	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS1	5996	broad.mit.edu	37	1	192547357	192547357	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240969429	240969429	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC3	79608	broad.mit.edu	37	11	8132164	8132164	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC3	79608	broad.mit.edu	37	11	8160051	8160051	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RILPL2	196383	broad.mit.edu	37	12	123900681	123900681	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130907094	130907094	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130963483	130963483	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43386190	43386190	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK4	54101	broad.mit.edu	37	21	43161678	43161678	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40695239	40695239	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF133	168433	broad.mit.edu	37	7	122338610	122338610	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF167	26001	broad.mit.edu	37	17	4845800	4845800	+	Intron	DEL	A	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF168	165918	broad.mit.edu	37	3	196201994	196201994	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF212	285498	broad.mit.edu	37	4	1073435	1073435	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78357710	78357710	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF216	54476	broad.mit.edu	37	7	5662683	5662684	+	Missense_Mutation	DNP	CG	GC	GC	rs139859373		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF216	54476	broad.mit.edu	37	7	5752387	5752387	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNLS	55328	broad.mit.edu	37	10	90341368	90341368	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNMT	8731	broad.mit.edu	37	18	13734586	13734586	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124745497	124745497	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10466457	10466457	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55533900	55533900	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55609151	55609151	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA6	27330	broad.mit.edu	37	X	83403148	83403148	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213434798	213434798	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSBN1	54665	broad.mit.edu	37	1	114310857	114310857	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTEL1	51750	broad.mit.edu	37	20	62305162	62305162	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTP3	83597	broad.mit.edu	37	3	46541811	46541811	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC2A	84127	broad.mit.edu	37	16	12145814	12145814	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159493974	159493974	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159560534	159560534	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165380320	165380321	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237663945	237663945	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237890381	237890381	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34023715	34023715	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S1PR1	1901	broad.mit.edu	37	1	101704852	101704852	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAR1A	56681	broad.mit.edu	37	10	71912108	71912108	+	3'UTR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARDH	1757	broad.mit.edu	37	9	136577868	136577868	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	10013941	10013941	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SC5DL	6309	broad.mit.edu	37	11	121174109	121174109	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG2	7857	broad.mit.edu	37	2	224463114	224463114	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCMH1	22955	broad.mit.edu	37	1	41502888	41502888	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166856287	166856287	+	Splice_Site	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166901716	166901716	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3B	55800	broad.mit.edu	37	11	123513124	123513124	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38664016	38664016	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167284288	167284288	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167055686	167055686	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71354395	71354395	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC22B	9554	broad.mit.edu	37	1	145109526	145109526	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23A	10484	broad.mit.edu	37	14	39555172	39555172	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24C	9632	broad.mit.edu	37	10	75527670	75527670	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169588315	169588315	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3C	10512	broad.mit.edu	37	7	80433294	80433294	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9227044	9227044	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115815990	115815990	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151115074	151115074	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT5	5413	broad.mit.edu	37	22	19707634	19707634	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94935730	94935730	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61223648	61223648	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF4	57794	broad.mit.edu	37	19	19427361	19427361	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7244452	7244452	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46355641	46355641	+	Splice_Site	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCB	6443	broad.mit.edu	37	4	52890329	52890329	+	Intron	SNP	A	G	G	rs112774633		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156778929	156778949	+	Intron	DEL	TCACCTTCCCCCATCTACCTG	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49135801	49135801	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHFM1	7979	broad.mit.edu	37	7	96339207	96339207	+	5'Flank	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHMT1	6470	broad.mit.edu	37	17	18250701	18250701	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC10	89790	broad.mit.edu	37	19	51918205	51918205	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52002534	52002534	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52130566	52130566	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51958820	51958820	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK1	150094	broad.mit.edu	37	21	44845963	44845963	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIKE1	80143	broad.mit.edu	37	1	115321741	115321741	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164751121	164751121	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP2	6502	broad.mit.edu	37	5	36171855	36171855	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160616716	160616716	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF9	89886	broad.mit.edu	37	1	159921405	159921405	+	3'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103701549	103701550	+	Intron	INS	-	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56904030	56904030	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1085503	1085503	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100451828	100451828	+	Missense_Mutation	SNP	C	A	A	rs145131568		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43262218	43262218	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22387315	22387315	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20031788	20031788	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110756950	110756950	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A3	5250	broad.mit.edu	37	12	98992384	98992384	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107314547	107314547	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A4	5172	broad.mit.edu	37	7	107335136	107335137	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85464112	85464112	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85488468	85488468	+	3'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32427026	32427026	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118147547	118147547	+	5'UTR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B4	84912	broad.mit.edu	37	7	133986824	133986824	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F2	54733	broad.mit.edu	37	11	107676120	107676120	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A6	145389	broad.mit.edu	37	14	61451635	61451635	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18270268	18270268	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A3	85414	broad.mit.edu	37	1	205628458	205628458	+	Silent	SNP	G	A	A	rs141291475	byFrequency	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A2	6522	broad.mit.edu	37	7	150771574	150771574	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220502245	220502245	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55691008	55691008	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A3	6531	broad.mit.edu	37	5	1394913	1394913	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A7	6534	broad.mit.edu	37	5	149584221	149584221	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70145656	70145656	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A7	9056	broad.mit.edu	37	14	23245231	23245231	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33355539	33355539	+	Silent	SNP	C	T	T	rs141456885		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656505	40656505	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A3	6547	broad.mit.edu	37	14	70527359	70527359	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103299840	103299840	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143271264	143271264	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2A1	6578	broad.mit.edu	37	3	133672506	133672506	+	Splice_Site	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN13	146857	broad.mit.edu	37	17	33768061	33768061	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20512545	20512545	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20530581	20530581	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168098301	168098301	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904933	144904934	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD3	4088	broad.mit.edu	37	15	67473647	67473647	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCD3	6604	broad.mit.edu	37	7	150936139	150936139	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC6	79677	broad.mit.edu	37	2	17865120	17865120	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2722716	2722717	+	Intron	INS	-	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2722724	2722724	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2747478	2747478	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2750424	2750424	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2751313	2751313	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMCHD1	23347	broad.mit.edu	37	18	2763596	2763596	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246091142	246091142	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAI2	6591	broad.mit.edu	37	8	49831348	49831348	+	3'UTR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNCAIP	9627	broad.mit.edu	37	5	121799164	121799164	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-26	767606	broad.mit.edu	37	14	101453313	101453313	+	5'Flank	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25328884	25328884	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPE	6635	broad.mit.edu	37	1	203830805	203830805	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25155033	25155033	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25213249	25213249	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25213288	25213288	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX11	29916	broad.mit.edu	37	17	46198968	46198968	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX13	23161	broad.mit.edu	37	7	17836494	17836494	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86238049	86238049	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX19	399979	broad.mit.edu	37	11	130785484	130785484	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX8	29886	broad.mit.edu	37	7	2303980	2303980	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108923735	108923735	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	107005408	107005408	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX11	6664	broad.mit.edu	37	2	5833567	5833567	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231067407	231067407	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA9	83890	broad.mit.edu	37	5	95018212	95018212	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35759608	35759608	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220355136	220355136	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55903684	55903684	+	5'Flank	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON2	10417	broad.mit.edu	37	4	1165500	1165500	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158584891	158584891	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158631214	158631214	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158656363	158656364	+	5'UTR	INS	-	AGAT	AGAT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41066031	41066031	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45829073	45829073	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30724818	30724818	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRMS	6725	broad.mit.edu	37	20	62172184	62172184	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX3	10214	broad.mit.edu	37	X	48206760	48206760	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA3	51046	broad.mit.edu	37	18	55020063	55020063	+	5'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104118966	104118966	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136078061	136078061	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG2	10735	broad.mit.edu	37	X	123195708	123195708	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47746387	47746387	+	Silent	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5141635	5141635	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK35	140901	broad.mit.edu	37	20	2097734	2097734	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOML3	161003	broad.mit.edu	37	13	39550731	39550731	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74476057	74476057	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX16	8675	broad.mit.edu	37	20	57248821	57248821	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX7	8417	broad.mit.edu	37	6	132824485	132824485	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120941724	120941724	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP6	29091	broad.mit.edu	37	14	25326512	25326512	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	900023	900023	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31573045	31573045	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT16H	11198	broad.mit.edu	37	14	21840301	21840301	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113265405	113265405	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYF2	25949	broad.mit.edu	37	1	25555610	25555610	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46345558	46345558	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNM	23336	broad.mit.edu	37	15	99672530	99672530	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119944675	119944675	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL3	94120	broad.mit.edu	37	6	159128441	159128441	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR8	83551	broad.mit.edu	37	6	132874098	132874098	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC3	6866	broad.mit.edu	37	12	57406598	57406598	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA2A	6871	broad.mit.edu	37	17	35836832	35836832	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R1	80835	broad.mit.edu	37	1	6639736	6639736	+	3'UTR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R60	338398	broad.mit.edu	37	7	143141164	143141164	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX10	347853	broad.mit.edu	37	11	67400069	67400069	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119427738	119427739	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX15	6913	broad.mit.edu	37	1	119474366	119474366	+	5'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35288379	35288379	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL5	340543	broad.mit.edu	37	X	102529649	102529649	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	133106583	133106583	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTEX1D1	200132	broad.mit.edu	37	1	67243129	67243129	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151748775	151748775	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR1	25851	broad.mit.edu	37	7	97862145	97862145	+	Silent	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEC	7006	broad.mit.edu	37	4	48152932	48152932	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEC	7006	broad.mit.edu	37	4	48230691	48230691	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TES	26136	broad.mit.edu	37	7	115857964	115857964	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13B	56156	broad.mit.edu	37	X	107225239	107225239	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP4	7023	broad.mit.edu	37	16	4310143	4310143	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM2	7052	broad.mit.edu	37	20	36779382	36779382	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2290771	2290771	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43527551	43527551	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGS1	96764	broad.mit.edu	37	8	56723335	56723335	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM5	284486	broad.mit.edu	37	1	151820641	151820641	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL2	55258	broad.mit.edu	37	2	88472942	88472942	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11418709	11418709	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIA1	7072	broad.mit.edu	37	2	70451749	70451749	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32526506	32526506	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155450561	155450561	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD7	91151	broad.mit.edu	37	16	3349677	3349677	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56817009	56817009	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE3	7090	broad.mit.edu	37	15	70345642	70345643	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82340023	82340023	+	Silent	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98133622	98133622	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR1	7096	broad.mit.edu	37	4	38798855	38798855	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120475277	120475277	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF3	56889	broad.mit.edu	37	10	98292782	98292782	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75315568	75315568	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM119	338773	broad.mit.edu	37	12	108985202	108985202	+	3'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM130	222865	broad.mit.edu	37	7	98448981	98448981	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132A	54972	broad.mit.edu	37	11	60703723	60703723	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM149	79713	broad.mit.edu	37	19	36231915	36231915	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM14E	645843	broad.mit.edu	37	3	152058724	152058724	+	5'UTR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM151A	256472	broad.mit.edu	37	11	66061839	66061839	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM178	130733	broad.mit.edu	37	2	39944345	39944345	+	Missense_Mutation	SNP	G	A	A	rs146286536		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM180	79847	broad.mit.edu	37	10	104228715	104228715	+	5'UTR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15430530	15430530	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM196	256130	broad.mit.edu	37	7	19761724	19761724	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM19	55266	broad.mit.edu	37	12	72090237	72090237	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM26	219623	broad.mit.edu	37	10	63170590	63170590	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9316992	9316992	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPO	7112	broad.mit.edu	37	12	98940096	98940096	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68788579	68788579	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29667422	29667422	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF9	3604	broad.mit.edu	37	1	7993221	7993221	+	Splice_Site	SNP	C	G	G	rs139075597		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNC2	7125	broad.mit.edu	37	20	44453089	44453089	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175106085	175106085	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6B	23112	broad.mit.edu	37	22	40444876	40444876	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372835	175372835	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47385928	47385928	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L2	146691	broad.mit.edu	37	17	17754212	17754212	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2A	7153	broad.mit.edu	37	17	38554793	38554793	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1AIP2	163590	broad.mit.edu	37	1	179834280	179834281	+	Intron	INS	-	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42601996	42601996	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53BP2	7159	broad.mit.edu	37	1	223991799	223991799	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579471	7579471	+	Frame_Shift_Del	DEL	G	-	-	rs56275308		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE2P1	646405	broad.mit.edu	37	13	25507316	25507316	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10910351	10910351	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRADD	8717	broad.mit.edu	37	16	67190605	67190605	+	Intron	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209951496	209951496	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45472438	45472438	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141370270	141370270	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML4	285852	broad.mit.edu	37	6	41196631	41196631	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM21	6737	broad.mit.edu	37	11	4406605	4406605	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230667127	230667127	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38225534	38225534	+	Missense_Mutation	SNP	T	G	G	rs114508439	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D4	81628	broad.mit.edu	37	7	100071909	100071909	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81609173	81609173	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872088	51872088	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180319983	180319983	+	5'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94839593	94839593	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179391982	179391982	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179467007	179467007	+	Splice_Site	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179473884	179473884	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179528865	179528865	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179544303	179544304	+	Intron	DNP	CC	AT	AT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179641663	179641663	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	94702	94702	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70961608	70961608	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43857644	43857644	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3B	84959	broad.mit.edu	37	11	122647789	122647789	+	Silent	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2CBP	90025	broad.mit.edu	37	6	83669669	83669669	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2H	7328	broad.mit.edu	37	7	129592300	129592300	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404220	34404220	+	RNA	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Q2	92912	broad.mit.edu	37	15	76168613	76168613	+	Splice_Site	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2T	29089	broad.mit.edu	37	1	202301011	202301011	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19455381	19455381	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19482030	19482030	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK3	25989	broad.mit.edu	37	15	75131431	75131431	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17728725	17728725	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35310542	35310542	+	Silent	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176305667	176305667	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNG	7374	broad.mit.edu	37	12	109547647	109547647	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158971591	158971591	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215853726	215853726	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216497008	216497008	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP25	29761	broad.mit.edu	37	21	17205574	17205574	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57642575	57642575	+	Missense_Mutation	SNP	T	G	G	rs61757571	byFrequency;by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP32	84669	broad.mit.edu	37	17	58283158	58283158	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61448811	61448811	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11955359	11955359	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6	9098	broad.mit.edu	37	17	5033994	5033994	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106717570	106717570	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38185344	38185344	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42705556	42705556	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52418326	52418326	+	IGR	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119474319	119474319	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119474642	119474642	+	IGR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18978435	18978435	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18993828	18993828	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	33808751	33808751	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4745273	4745273	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	47927041	47927041	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48967228	48967228	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49059690	49059690	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49860890	49860890	+	IGR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49865538	49865538	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5058281	5058281	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55059910	55059910	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55554771	55554771	+	IGR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55782824	55782824	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56064621	56064621	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58059549	58059549	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	82843105	82843105	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89464555	89464555	+	IGR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89501328	89501328	+	IGR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94646145	94646145	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	25957247	25957247	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31769245	31769245	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	4208639	4208639	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	6587146	6587146	+	IGR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	79187610	79187610	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56574489	56574489	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65884031	65884031	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928334	86928334	+	IGR	SNP	G	T	T	rs144754612	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	104917558	104917558	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20097293	20097293	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20138255	20138255	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25736463	25736463	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39855406	39855406	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52755386	52755386	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	59602721	59602721	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82384036	82384036	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20178002	20178002	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20178155	20178155	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20450304	20450304	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20467083	20467083	+	IGR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20833190	20833190	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21008985	21008985	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21009203	21009203	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22567176	22567176	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	41456636	41456636	+	IGR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399636	32399636	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32617002	32617002	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621821	32621821	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424811	33424811	+	IGR	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605137	33605137	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48532328	48532328	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	17360628	17360628	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20679955	20679955	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26081916	26081916	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30554954	30554954	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	48925725	48925725	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60217211	60217211	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	10636970	10636970	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11609611	11609611	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11644657	11644657	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14146795	14146795	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14613946	14613946	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14631310	14631310	+	IGR	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14992557	14992557	+	IGR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29305129	29305129	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57677240	57677240	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60109667	60109667	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21751966	21751966	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104469858	104469858	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12986480	12986480	+	IGR	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	147314169	147314169	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903341	148903341	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149050288	149050288	+	IGR	SNP	G	T	T	rs114244252	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149062320	149062320	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065373	149065373	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152716979	152716979	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153352241	153352241	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	154351116	154351116	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158424261	158424261	+	IGR	SNP	G	T	T	rs73023896	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158848701	158848701	+	IGR	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16321424	16321424	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219784497	219784497	+	IGR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221307350	221307351	+	IGR	DNP	CC	AT	AT			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	228652242	228652242	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	229824922	229824922	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240137358	240137358	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242223536	242223536	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902345	247902345	+	IGR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247938996	247938996	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	53039331	53039331	+	IGR	DEL	T	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	25142063	25142063	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	53968196	53968196	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11114644	11114644	+	IGR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181182	11181182	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181727	11181727	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14721707	14721707	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14721709	14721709	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14743923	14743923	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14800193	14800193	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	26734461	26734461	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32114285	32114285	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107092217	107092217	+	IGR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133020161	133020161	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17566715	17566715	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26217814	26217814	+	IGR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065290	34065290	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	62030509	62030509	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	82836971	82836971	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83446251	83446251	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	85329819	85329819	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90458677	90458677	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800188	91800188	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800465	91800465	+	IGR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800631	91800631	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800795	91800795	+	IGR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872910	91872910	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92151622	92151622	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116364654	116364654	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	11924452	11924452	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155831699	155831699	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	168384728	168384728	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97941472	97941472	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98031065	98031065	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165577609	165577609	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22595900	22595900	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36508780	36508780	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3904031	3904031	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	41844591	41844591	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69480313	69480313	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69574419	69574419	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70221164	70221164	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70284856	70284856	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	73792794	73792794	+	IGR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126506910	126506910	+	IGR	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	144608392	144608392	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14639606	14639606	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14961128	14961128	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15451493	15451493	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180542258	180542258	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304622	23304623	+	IGR	DNP	TT	AA	AA			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304626	23304626	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41586584	41586584	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	767616	767616	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84295970	84295970	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100499196	100499196	+	IGR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	108307059	108307059	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	140284249	140284249	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27492052	27492052	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	28937734	28937734	+	IGR	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30453964	30453964	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778766	80778766	+	IGR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	81265943	81265943	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	101977693	101977693	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142723286	142723286	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707438	144707438	+	IGR	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148334389	148334389	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159024527	159024527	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	2552776	2552776	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	51451115	51451115	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128384	57128384	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57217004	57217004	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57245060	57245060	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268797	57268797	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268803	57268803	+	IGR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62708525	62708525	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63602215	63602215	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	75465388	75465388	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34731912	34731912	+	IGR	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	36952877	36952877	+	IGR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	51705487	51705487	+	IGR	SNP	G	T	T	rs73677532	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	53888408	53888408	+	IGR	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	125450471	125450471	+	IGR	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	141038135	141038135	+	IGR	DEL	G	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30559382	30559382	+	IGR	DEL	G	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	34917902	34917902	+	IGR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88401038	88401038	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90631705	90631705	+	IGR	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	92978337	92978337	+	IGR	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	95439318	95439318	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	102962189	102962189	+	IGR	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115827042	115827042	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134743462	134743462	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134745530	134745530	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134809324	134809324	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811719	134811719	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	138529622	138529622	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146036676	146036676	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39647437	39647437	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48136630	48136630	+	IGR	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48306277	48306277	+	IGR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63654060	63654060	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	63918023	63918023	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92479528	92479528	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10011806	10011806	+	IGR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	10011817	10011817	+	IGR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108116566	108116566	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101198042	101198042	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100587817	100587817	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS16	64601	broad.mit.edu	37	20	2845517	2845517	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS28	51160	broad.mit.edu	37	8	145650186	145650186	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK2	7444	broad.mit.edu	37	2	58366863	58366863	+	Nonsense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTA1	51534	broad.mit.edu	37	6	142510618	142510618	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61026549	61026549	+	Silent	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11	51729	broad.mit.edu	37	12	14947791	14947791	+	Intron	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71130289	71130289	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR28	135886	broad.mit.edu	37	7	73275552	73275552	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR1	9948	broad.mit.edu	37	4	10079225	10079225	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR4	10785	broad.mit.edu	37	21	44299681	44299681	+	5'Flank	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36557325	36557325	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR86	349136	broad.mit.edu	37	7	151082056	151082056	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC13	164237	broad.mit.edu	37	20	44333264	44333264	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIZ	58525	broad.mit.edu	37	19	15535040	15535040	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL2	6846	broad.mit.edu	37	1	168510285	168510285	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XG	7499	broad.mit.edu	37	X	2726122	2726122	+	Intron	SNP	G	T	T	rs55930640		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168105070	168105070	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR9	389668	broad.mit.edu	37	8	71646054	71646054	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17294544	17294544	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100333401	100333401	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101370066	101370066	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB46	140685	broad.mit.edu	37	20	62384247	62384247	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC12	170261	broad.mit.edu	37	X	117959580	117959580	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC5	25921	broad.mit.edu	37	11	57440517	57440517	+	5'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145161807	145161807	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135602646	135602646	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77616593	77616593	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766681	77766681	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP3	124961	broad.mit.edu	37	17	4996298	4996298	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE1	53349	broad.mit.edu	37	14	73464462	73464462	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68217815	68217815	+	Splice_Site	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57290896	57290896	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN3	80317	broad.mit.edu	37	6	28327303	28327303	+	5'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF143	7702	broad.mit.edu	37	11	9495418	9495418	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF174	7727	broad.mit.edu	37	16	3451956	3451956	+	5'UTR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF180	7733	broad.mit.edu	37	19	45004336	45004336	+	5'UTR	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF181	339318	broad.mit.edu	37	19	35232200	35232200	+	Missense_Mutation	SNP	T	G	G	rs143797666		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF223	7766	broad.mit.edu	37	19	44564659	44564659	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF235	9310	broad.mit.edu	37	19	44802808	44802808	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF254	9534	broad.mit.edu	37	19	24270224	24270224	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF267	10308	broad.mit.edu	37	16	31906112	31906112	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43310043	43310044	+	Intron	DNP	CC	AG	AG			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF337	26152	broad.mit.edu	37	20	25657370	25657370	+	Missense_Mutation	SNP	C	G	G	rs140373318		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF33A	7581	broad.mit.edu	37	10	38345105	38345105	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32340859	32340859	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF362	149076	broad.mit.edu	37	1	33760575	33760575	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF395	55893	broad.mit.edu	37	8	28304710	28304710	+	Translation_Start_Site	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF415	55786	broad.mit.edu	37	19	53625931	53625931	+	5'UTR	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF416	55659	broad.mit.edu	37	19	58087428	58087428	+	Intron	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF438	220929	broad.mit.edu	37	10	31166056	31166056	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57199986	57199986	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44764010	44764010	+	3'UTR	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512	84450	broad.mit.edu	37	2	27825851	27825851	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31025978	31025978	+	Intron	DEL	C	-	-			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31048131	31048131	+	3'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF556	80032	broad.mit.edu	37	19	2878065	2878065	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9581105	9581105	+	Silent	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85341719	85341719	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	64840	64840	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF630	57232	broad.mit.edu	37	X	47918444	47918444	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182025654	182025654	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF648	127665	broad.mit.edu	37	1	182026579	182026579	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF658	26149	broad.mit.edu	37	9	40774115	40774115	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56953189	56953189	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF678	339500	broad.mit.edu	37	1	227826920	227826920	+	Intron	SNP	G	T	T	rs140344414	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57528880	57528880	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF718	255403	broad.mit.edu	37	4	106061	106061	+	Intron	SNP	A	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF772	400720	broad.mit.edu	37	19	57988458	57988458	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF777	27153	broad.mit.edu	37	7	149152848	149152848	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF800	168850	broad.mit.edu	37	7	127013766	127013766	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955154	113955154	+	Silent	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768489	57768489	+	Silent	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57829259	57829259	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNFX1	57169	broad.mit.edu	37	20	47879868	47879868	+	Intron	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21215360	21215360	+	Silent	SNP	G	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58551818	58551818	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM5	57643	broad.mit.edu	37	1	45506070	45506070	+	Nonsense_Mutation	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWILCH	55055	broad.mit.edu	37	15	66832443	66832443	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44983934	44983934	+	5'Flank	SNP	G	T	T	rs71494733		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30900023	30900023	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31086211	31086211	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89774486	89774486	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	24736923	24736923	+	RNA	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	74355155	74355155	+	5'Flank	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5320283	5320283	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5416464	5416464	+	Intron	SNP	C	A	A	rs142625611	by1000genomes	TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20405318	20405318	+	Intron	SNP	C	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37188710	37188710	+	Intron	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	24115622	24115622	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36913592	36913592	+	RNA	SNP	C	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142713948	142713948	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143213162	143213162	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148891771	148891771	+	Intron	SNP	G	T	T	rs3955799		TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	58883430	58883430	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133067001	133067001	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89470446	89470446	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89934366	89934366	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89986451	89986451	+	Intron	SNP	T	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90049801	90049801	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90229080	90229080	+	Intron	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90458205	90458205	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9900520	9900520	+	Intron	SNP	A	C	C			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100552728	100552728	+	RNA	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142197762	142197762	+	Intron	SNP	T	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142239750	142239750	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39873503	39873503	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370027	63370027	+	Intron	SNP	A	G	G			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	99585152	99585152	+	Intron	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155255043	155255043	+	3'UTR	SNP	G	A	A			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17178426	17178426	+	RNA	SNP	G	T	T			TCGA-91-6829-01A-21D-1855-08	TCGA-91-6829-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
