Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTBL2	345651	genome.wustl.edu	37	5	56777892	56777892	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	5	56777892	56777892	C	G	SNP	ACTBL2	NM_001017992.2	human	genbank	58_37c	-1	validated	missense	c.643	p.E215Q	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
APLP1	333	genome.wustl.edu	37	19	36365645	36365645	+	Silent	SNP	G	G	A	rs139176114	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	19	36365645	36365645	G	A	SNP	APLP1	NM_001024807.1	human	genbank	58_37c	+1	reviewed	silent	c.1218	p.A406	1.000	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_Amyloid beta a4 protein copper binding domain (domain 2),superfamily_A heparin-binding domain,HMMPfam_APP_amyloid,PatternScan_A4_EXTRA,PatternScan_A4_INTRA,superfamily_CAPPD an extracellular domain of amyloid beta A4 protein	-	no_errors
C9orf125	84302	genome.wustl.edu	37	9	104238634	104238634	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	9	104238634	104238634	G	T	SNP	C9orf125	NM_032342.1	human	genbank	58_37c	-1	provisional	missense	c.741	p.H247Q	1.000	NULL	NULL	-	no_errors
CHD9	80205	genome.wustl.edu	37	16	53190227	53190227	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	16	53190227	53190227	T	G	SNP	CHD9	NM_025134.4	human	genbank	58_37c	+1	validated	missense	c.226	p.S76A	0.982	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_CHROMO,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,superfamily_Chromodomain-like,superfamily_SSF52540	-	no_errors
FANCC	2176	genome.wustl.edu	37	9	98011555	98011555	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	9	98011555	98011555	C	A	SNP	FANCC	NM_000136.2	human	genbank	58_37c	-1	reviewed	missense	c.19	p.D7Y	0.005	HMMPfam_Fanconi_C	HMMPfam_Fanconi_C	-	no_errors
GRIK5	2901	genome.wustl.edu	37	19	42566998	42566998	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	19	42566998	42566998	A	T	SNP	GRIK5	NM_002088.3	human	genbank	58_37c	-1	reviewed	missense	c.254	p.I85N	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HEATR7B2	133558	genome.wustl.edu	37	5	41058282	41058282	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	5	41058282	41058282	G	A	SNP	HEATR7B2	NM_173489.4	human	genbank	58_37c	-1	validated	silent	c.639	p.H213	0.930	NULL	superfamily_ARM repeat	-	no_errors
KHDRBS1	10657	genome.wustl.edu	37	1	32495940	32495942	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	1	32495940	32495942	GAG	-	DEL	KHDRBS1	NM_006559.1	human	genbank	58_37c	+1	provisional	in_frame_del	c.424_426	p.E143in_frame_del	1.000:0.998:0.666	NULL	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
KIAA1267	284058	genome.wustl.edu	37	17	44110510	44110511	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	17	44110510	44110511	CA	-	DEL	KIAA1267	NM_015443.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.2773_2772	p.C924fs	1.000:1.000	NULL	NULL	-	no_errors
MIF4GD	57409	genome.wustl.edu	37	17	73264205	73264206	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	17	73264205	73264206	AC	-	DEL	MIF4GD	NM_020679.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.253_252	p.F85fs	1.000:0.995	HMMPfam_MIF4G,superfamily_ARM-type_fold	HMMPfam_MIF4G,superfamily_ARM-type_fold	-	no_errors
MRGPRX3	117195	genome.wustl.edu	37	11	18158850	18158850	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	11	18158850	18158850	C	T	SNP	MRGPRX3	NM_054031.3	human	genbank	58_37c	+1	reviewed	missense	c.101	p.T34M	0.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
ODZ4	26011	genome.wustl.edu	37	11	78498080	78498080	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	11	78498080	78498080	G	T	SNP	ODZ4	NM_001098816.2	human	genbank	58_37c	-1	validated	missense	c.2228	p.T743N	1.000	HMMSmart_EGF,HMMPfam_EGF_2	HMMPfam_NHL,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_TolB_C,superfamily_SSF57196	-	no_errors
OR5L1	219437	genome.wustl.edu	37	11	55579499	55579499	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	11	55579499	55579499	G	T	SNP	OR5L1	NM_001004738.1	human	genbank	58_37c	+1	provisional	missense	c.557	p.S186I	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178917478	178917478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	3	178917478	178917478	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.353	p.G118D	1.000	superfamily_SSF54236	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLEKHA2	59339	genome.wustl.edu	37	8	38809720	38809721	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	8	38809720	38809721	-	C	INS	PLEKHA2	ENST00000420274	human	ensembl	58_37c	+1	known	frame_shift_ins	c.523_524	p.H176fs	0.486:0.798	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
SPTB	6710	genome.wustl.edu	37	14	65266520	65266520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	14	65266520	65266520	C	T	SNP	SPTB	NM_001024858.2	human	genbank	58_37c	-1	reviewed	missense	c.1009	p.V337I	0.995	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729	-	no_errors
SV2A	9900	genome.wustl.edu	37	1	149879682	149879682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	1	149879682	149879682	C	T	SNP	SV2A	NM_014849.3	human	genbank	58_37c	-1	validated	missense	c.1456	p.V486M	0.992	HMMPfam_MFS_1	PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
TAPT1	202018	genome.wustl.edu	37	4	16193020	16193020	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	4	16193020	16193020	G	A	SNP	TAPT1	ENST00000513782	human	ensembl	58_37c	-1	known	missense	c.88	p.R30C	0.804	HMMPfam_DUF747	HMMPfam_DUF747	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
TRMT12	55039	genome.wustl.edu	37	8	125463552	125463552	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	8	125463552	125463552	T	C	SNP	TRMT12	NM_017956.3	human	genbank	58_37c	+1	validated	silent	c.384	p.A128	0.856	NULL	HMMPfam_Met_10,superfamily_SSF53335	-	no_errors
UBAP2L	9898	genome.wustl.edu	37	1	154227320	154227320	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	1	154227320	154227320	C	T	SNP	UBAP2L	NM_014847.3	human	genbank	58_37c	+1	validated	silent	c.1863	p.F621	1.000	NULL	HMMPfam_UBA,HMMSmart_SM00165	-	no_errors
ZDHHC1	29800	genome.wustl.edu	37	16	67432541	67432541	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	16	67432541	67432541	A	C	SNP	ZDHHC1	NM_013304.2	human	genbank	58_37c	-1	validated	missense	c.749	p.L250R	0.998	NULL	HMMPfam_zf-DHHC	-	no_errors
ZNF843	283933	genome.wustl.edu	37	16	31447564	31447564	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	16	31447564	31447564	C	T	SNP	ZNF843	NM_001136509.1	human	genbank	58_37c	-1	provisional	missense	c.607	p.G203R	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZXDA	7789	genome.wustl.edu	37	X	57935544	57935544	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A04V-01A-21W-A050-09	TCGA-A2-A04V-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	89501861-2778-4b88-9a44-939fed99850d	5a514786-920b-4f35-932d-c2116fdea598	X	57935544	57935544	C	A	SNP	ZXDA	NM_007156.4	human	genbank	58_37c	-1	reviewed	silent	c.1311	p.L437	0.996	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
