Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ATXN1	0	genome.wustl.edu	37	6	16306707	16306707	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	6	16306707	16306707	C	T	SNP	ATXN1	NM_000332.3	human	genbank	58_37c	-1	reviewed	silent	c.2301	p.A767	0.012	NULL	HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain	-	no_errors
ATXN3	0	genome.wustl.edu	37	14	92562444	92562444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	14	92562444	92562444	G	A	SNP	ATXN3	NM_004993.5	human	genbank	58_37c	-1	reviewed	missense	c.227	p.S76F	1.000	HMMPfam_Josephin	HMMPfam_UIM,HMMSmart_SM00726,HMMPfam_Josephin	-	no_errors
C18orf25	0	genome.wustl.edu	37	18	43833705	43833706	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	18	43833705	43833706	-	T	INS	C18orf25	NM_145055.3	human	genbank	58_37c	+1	validated	frame_shift_ins	c.941_942	p.N315fs	0.954:0.903	NULL	NULL	-	no_errors
CTNNA1	0	genome.wustl.edu	37	5	138264934	138264934	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	5	138264934	138264934	G	T	SNP	CTNNA1	NM_001903.2	human	genbank	58_37c	+1	validated	splice_site	c.1900-1	e13-1	1.000	-	-	-	no_errors
ENSG00000231520	0	genome.wustl.edu	37	10	42380150	42380150	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	10	42380150	42380150	A	T	SNP	ENSG00000231520	ENST00000429113	human	ensembl	58_37c	-1	known	missense	c.100	p.W34R	0.000	NULL	NULL	-	no_stop_codon
ENSG00000244385	0	genome.wustl.edu	37	3	195701310	195701311	+	Splice_Site	INS	-	-	AA	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	195701310	195701311	-	AA	INS	ENSG00000244385	ENST00000354937	human	ensembl	58_37c	-1	novel	splice_site_ins	c.NULL	NULL	1.000:0.999	-	-	-	no_coding_region
ENSG00000245156	0	genome.wustl.edu	37	11	66039373	66039373	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	11	66039373	66039373	G	A	SNP	ENSG00000245156	ENST00000501708	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.544	-	-	-	no_errors
ERG	0	genome.wustl.edu	37	21	39755519	39755519	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	39755519	39755519	G	T	SNP	ERG	NM_001136154.1	human	genbank	58_37c	-1	validated	missense	c.1267	p.P423T	1.000	"superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ITPR3	0	genome.wustl.edu	37	6	33631568	33631568	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	6	33631568	33631568	C	G	SNP	ITPR3	NM_002224.2	human	genbank	58_37c	+1	validated	missense	c.1059	p.C353W	1.000	HMMPfam_MIR,superfamily_MIR,HMMSmart_MIR	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR,HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_MIR,superfamily_SSF100909	-	no_errors
KRTAP10-7	0	genome.wustl.edu	37	21	46020889	46020889	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	46020889	46020889	T	A	SNP	KRTAP10-7	ENST00000380102	human	ensembl	58_37c	+1	known	missense	c.368	p.V123D	0.009	NULL	HMMPfam_Keratin_B2	-	no_errors
KRTAP19-2	0	genome.wustl.edu	37	21	31859634	31859634	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	21	31859634	31859634	A	T	SNP	KRTAP19-2	NM_181608.1	human	genbank	58_37c	-1	provisional	missense	c.34	p.F12I	0.013	NULL	NULL	-	no_errors
LOC100294386	0	genome.wustl.edu	37	3	38519699	38519699	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	38519699	38519699	C	T	SNP	LOC100294386	XM_002346487.1	human	genbank	58_37c	-1	model	missense	c.4807	p.D1603N	0.363	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
NRK	0	genome.wustl.edu	37	X	105132399	105132399	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	X	105132399	105132399	G	A	SNP	NRK	NM_198465.2	human	genbank	58_37c	+1	validated	missense	c.365	p.R122Q	0.954	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_p53-like transcription factors,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PIK3C2B	0	genome.wustl.edu	37	1	204438798	204438798	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	1	204438798	204438798	C	T	SNP	PIK3C2B	NM_002646.3	human	genbank	58_37c	-1	reviewed	missense	c.133	p.E45K	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_PI3Ka,HMMSmart_SM00145,HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,HMMPfam_PI3K_C2,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_Ubiquitin-like	-	no_errors
PLCH1	0	genome.wustl.edu	37	3	155232586	155232586	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	155232586	155232586	C	A	SNP	PLCH1	NM_001130960.1	human	genbank	58_37c	-1	validated	nonsense	c.1522	p.E508*	1.000	superfamily_PLC-like phosphodiesterases	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PI-PLC-X,HMMSmart_SM00148,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00054,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_efhand_like,superfamily_PLC-like phosphodiesterases,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_PH domain-like	-	no_errors
PLD5	0	genome.wustl.edu	37	1	242451687	242451687	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	1	242451687	242451687	G	T	SNP	PLD5	NM_152666.1	human	genbank	58_37c	-1	provisional	missense	c.196	p.H66N	1.000	superfamily_SSF56024	HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024	-	no_errors
RGMA	0	genome.wustl.edu	37	15	93588269	93588269	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	15	93588269	93588269	C	T	SNP	RGMA	NM_020211.2	human	genbank	58_37c	-1	reviewed	missense	c.1312	p.A438T	0.000	HMMPfam_RGM_C	HMMPfam_RGM_C,HMMPfam_RGM_N	-	no_errors
SMARCA1	0	genome.wustl.edu	37	X	128631871	128631871	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	X	128631871	128631871	A	T	SNP	SMARCA1	NM_003069.3	human	genbank	58_37c	-1	reviewed	missense	c.1455	p.S485R	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMSmart_SM00717,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_Homeodomain-like,HMMSmart_SM00487,HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI,HMMPfam_SLIDE,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
STXBP2	0	genome.wustl.edu	37	19	7712614	7712614	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	19	7712614	7712614	C	G	SNP	STXBP2	NM_006949.2	human	genbank	58_37c	+1	reviewed	missense	c.1700	p.S567C	1.000	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins	-	no_errors
TRRAP	0	genome.wustl.edu	37	7	98527687	98527687	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	7	98527687	98527687	C	T	SNP	TRRAP	ENST00000456197	human	ensembl	58_37c	+1	known	nonsense	c.2395	p.R799*	0.999	superfamily_ARM repeat	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_COPPER_BLUE,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,superfamily_Protein prenylyltransferase,superfamily_TPR-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
UNC13D	0	genome.wustl.edu	37	17	73836636	73836636	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	17	73836636	73836636	C	T	SNP	UNC13D	NM_199242.2	human	genbank	58_37c	-1	reviewed	silent	c.705	p.K235	1.000	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors
ZBTB38	0	genome.wustl.edu	37	3	141164333	141164333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	3	141164333	141164333	G	A	SNP	ZBTB38	NM_001080412.2	human	genbank	58_37c	+1	validated	missense	c.3103	p.E1035K	0.998	superfamily_SSF57667	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF629	0	genome.wustl.edu	37	16	30793176	30793176	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A1FX-01A-11D-A13L-09	TCGA-A2-A1FX-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	0d3dd7a0-ad8d-46cc-86c4-c1994a7b4b74	8d56ba71-9300-4982-8908-7a350aa3b040	16	30793176	30793176	T	C	SNP	ZNF629	NM_001080417.1	human	genbank	58_37c	-1	provisional	missense	c.2473	p.S825G	0.855	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
