Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA13	0	genome.wustl.edu	37	7	48314636	48314636	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	7	48314636	48314636	C	T	SNP	ABCA13	NM_152701.3	human	genbank	58_37c	+1	reviewed	silent	c.5373	p.F1791	0.214	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCA9	0	genome.wustl.edu	37	17	66979929	66979929	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	66979929	66979929	T	C	SNP	ABCA9	NM_080283.3	human	genbank	58_37c	-1	reviewed	missense	c.4561	p.K1521E	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AGBL5	0	genome.wustl.edu	37	2	27275875	27275875	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	27275875	27275875	G	C	SNP	AGBL5	NM_021831.5	human	genbank	58_37c	+1	validated	missense	c.49	p.G17R	1.000	NULL	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases	-	no_errors
APOB	0	genome.wustl.edu	37	2	21232258	21232258	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	21232258	21232258	A	C	SNP	APOB	NM_000384.2	human	genbank	58_37c	-1	reviewed	missense	c.7482	p.N2494K	0.888	NULL	HMMPfam_Vitellogenin_N,HMMSmart_SM00638,HMMPfam_DUF1081,HMMPfam_DUF1943,superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,superfamily_Lipovitellin-phosvitin complex superhelical domain	-	no_errors
ARHGAP31	0	genome.wustl.edu	37	3	119134300	119134300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	119134300	119134300	G	A	SNP	ARHGAP31	NM_020754.2	human	genbank	58_37c	+1	reviewed	missense	c.3524	p.R1175H	1.000	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors
ASNS	0	genome.wustl.edu	37	7	97481770	97481770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	7	97481770	97481770	G	A	SNP	ASNS	NM_001673.4	human	genbank	58_37c	-1	reviewed	missense	c.1487	p.A496V	0.134	superfamily_SSF52402	HMMPfam_GATase_2,HMMPfam_Asn_synthase,superfamily_SSF52402,superfamily_SSF56235	-	no_errors
ATP2A1	0	genome.wustl.edu	37	16	28899040	28899040	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	28899040	28899040	G	A	SNP	ATP2A1	NM_173201.2	human	genbank	58_37c	+1	reviewed	missense	c.925	p.E309K	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
ATP2B3	0	genome.wustl.edu	37	X	152835130	152835130	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	152835130	152835130	C	A	SNP	ATP2B3	NM_021949.3	human	genbank	58_37c	+1	reviewed	missense	c.3412	p.L1138I	1.000	NULL	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
BLK	0	genome.wustl.edu	37	8	11412989	11412989	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	11412989	11412989	G	T	SNP	BLK	NM_001715.2	human	genbank	58_37c	+1	validated	missense	c.768	p.W256C	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
BRD7P3	0	genome.wustl.edu	37	6	118823396	118823396	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	118823396	118823396	G	A	SNP	BRD7P3	NR_002730.2	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000	-	-	-	pseudogene
C17orf97	0	genome.wustl.edu	37	17	263526	263526	+	Missense_Mutation	SNP	G	G	A	rs142578327	byFrequency	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	263526	263526	G	A	SNP	C17orf97	NM_001013672.4	human	genbank	58_37c	+1	validated	missense	c.892	p.D298N	0.000	NULL	NULL	-	no_errors
C2orf58	0	genome.wustl.edu	37	2	38407861	38407861	+	RNA	SNP	A	A	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	38407861	38407861	A	T	SNP	C2orf58	NR_027252.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.001	-	-	-	no_errors
CARD17	0	genome.wustl.edu	37	11	104971500	104971500	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	104971500	104971500	A	T	SNP	CARD17	NM_001007232.1	human	genbank	58_37c	-1	provisional	missense	c.14	p.V5D	0.090	HMMPfam_CARD,HMMSmart_CARD,superfamily_DEATH_like	HMMPfam_CARD,HMMSmart_CARD,superfamily_DEATH_like	-	no_errors
CCDC66	0	genome.wustl.edu	37	3	56650054	56650055	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	56650054	56650055	-	CTC	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	in_frame_ins	c.1816_1817	p.607in_frame_insP	0.797:0.972	NULL	NULL	-	no_errors
CHST9	0	genome.wustl.edu	37	18	24497140	24497140	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	24497140	24497140	C	A	SNP	CHST9	NM_031422.4	human	genbank	58_37c	-1	validated	missense	c.415	p.A139S	0.000	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
COL6A6	0	genome.wustl.edu	37	3	130380981	130380981	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	130380981	130380981	C	G	SNP	COL6A6	NM_001102608.1	human	genbank	58_37c	+1	provisional	missense	c.6331	p.Q2111E	1.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like	-	no_errors
CRAT	0	genome.wustl.edu	37	9	131860611	131860611	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	131860611	131860611	G	A	SNP	CRAT	ENST00000455396	human	ensembl	58_37c	-1	known	missense	c.40	p.P14S	0.782	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CRCP	0	genome.wustl.edu	37	7	65579837	65579837	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	7	65579837	65579837	G	T	SNP	CRCP	ENST00000431089	human	ensembl	58_37c	+1	known	nonsense	c.22	p.E8*	0.993	NULL	HMMSmart_RPOL4c,superfamily_HRDC_like,HMMPfam_RNA_pol_III_C17	-	no_errors
CROCCL1	0	genome.wustl.edu	37	1	16955106	16955106	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	16955106	16955106	C	T	SNP	CROCCL1	NR_026752.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.985	-	-	-	pseudogene
DNAH5	0	genome.wustl.edu	37	5	13700790	13700790	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	13700790	13700790	A	T	SNP	DNAH5	NM_001369.2	human	genbank	58_37c	-1	reviewed	missense	c.13682	p.F4561Y	1.000	HMMPfam_Dynein_heavy	HMMSmart_AAA,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin,superfamily_SSF52540	-	no_errors
DNMT1	0	genome.wustl.edu	37	19	10291057	10291057	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	10291057	10291057	G	A	SNP	DNMT1	NM_001130823.1	human	genbank	58_37c	-1	reviewed	silent	c.414	p.P138	0.013	NULL	HMMPfam_BAH,HMMSmart_SM00439,HMMPfam_DNA_methylase,HMMPfam_zf-CXXC,HMMPfam_DMAP_binding,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
DOCK6	0	genome.wustl.edu	37	19	11313275	11313275	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	11313275	11313275	G	A	SNP	DOCK6	NM_020812.2	human	genbank	58_37c	-1	validated	silent	c.5346	p.I1782	0.988	NULL	HMMPfam_Ded_cyto	-	no_errors
DTX4	0	genome.wustl.edu	37	11	58949292	58949292	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	58949292	58949292	G	A	SNP	DTX4	NM_015177.1	human	genbank	58_37c	+1	validated	missense	c.292	p.D98N	1.000	HMMPfam_WWE,HMMSmart_SM00678	HMMSmart_SM00184,HMMPfam_WWE,HMMSmart_SM00678,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
DUSP19	0	genome.wustl.edu	37	2	183943850	183943850	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	183943850	183943850	C	A	SNP	DUSP19	NM_080876.3	human	genbank	58_37c	+1	validated	missense	c.189	p.D63E	1.000	superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ENPP1	0	genome.wustl.edu	37	6	132206110	132206110	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	132206110	132206110	A	G	SNP	ENPP1	NM_006208.2	human	genbank	58_37c	+1	reviewed	missense	c.2351	p.Y784C	0.996	HMMSmart_NUC,superfamily_SSF54060	HMMPfam_Somatomedin_B,HMMSmart_SO,PatternScan_SMB_1,HMMSmart_NUC,HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core,superfamily_SSF54060,superfamily_SSF90188	-	no_errors
ENSG00000247613	0	genome.wustl.edu	37	1	153520988	153520988	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	153520988	153520988	G	C	SNP	ENSG00000247613	ENST00000499546	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.008	-	-	-	no_errors
EPHB1	0	genome.wustl.edu	37	3	134884889	134884889	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	134884889	134884889	C	A	SNP	EPHB1	NM_004441.4	human	genbank	58_37c	+1	reviewed	silent	c.1665	p.S555	0.133	NULL	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
ERC1	0	genome.wustl.edu	37	12	1137553	1137553	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	1137553	1137553	T	C	SNP	ERC1	NM_178040.2	human	genbank	58_37c	+1	reviewed	silent	c.484	p.L162	0.000	HMMPfam_Cast	superfamily_Prefoldin,HMMPfam_RBD-FIP,HMMPfam_Cast	-	no_errors
FAM13C	0	genome.wustl.edu	37	10	61023859	61023859	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	61023859	61023859	C	G	SNP	FAM13C	NM_001143773.1	human	genbank	58_37c	-1	validated	missense	c.761	p.R254P	1.000	NULL	NULL	-	no_errors
FAP	0	genome.wustl.edu	37	2	163083083	163083083	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	163083083	163083083	A	T	SNP	FAP	NM_004460.2	human	genbank	58_37c	-1	reviewed	missense	c.140	p.I47N	1.000	superfamily_SSF82171	HMMPfam_Peptidase_S9,HMMPfam_DPPIV_N,PatternScan_PRO_ENDOPEP_SER,superfamily_SSF53474,superfamily_SSF82171	-	no_errors
FHL1	0	genome.wustl.edu	37	X	135288738	135288738	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	135288738	135288738	G	A	SNP	FHL1	NM_001449.4	human	genbank	58_37c	+1	reviewed	silent	c.147	p.A49	0.084	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
FOLH1	0	genome.wustl.edu	37	11	49170190	49170190	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	49170190	49170190	C	G	SNP	FOLH1	NM_004476.1	human	genbank	58_37c	-1	reviewed	splice_site	c.2063+1	e18+1	1.000	-	-	-	no_errors
FRY	0	genome.wustl.edu	37	13	32863812	32863812	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	13	32863812	32863812	C	T	SNP	FRY	NM_023037.2	human	genbank	58_37c	+1	validated	silent	c.8512	p.L2838	1.000	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
GAGE8	0	genome.wustl.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	49208295	49208296	-	TAT	INS	GAGE8	NM_012196.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.24_25	p.9in_frame_insY	0.002:0.002	HMMPfam_GAGE	HMMPfam_GAGE	-	no_errors
GAPDH	0	genome.wustl.edu	37	12	6646882	6646882	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	6646882	6646882	G	C	SNP	GAPDH	NM_002046.3	human	genbank	58_37c	+1	reviewed	missense	c.658	p.V220L	1.000	HMMPfam_Gp_dh_C,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain	HMMPfam_Gp_dh_N,HMMPfam_Gp_dh_C,PatternScan_GAPDH,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8115852	8115853	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	8115852	8115853	AT	-	DEL	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1201_1202	p.M401fs	1.000:1.000	NULL	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GLDC	0	genome.wustl.edu	37	9	6533047	6533048	+	Frame_Shift_Ins	INS	-	-	GG	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	6533047	6533048	-	GG	INS	GLDC	NM_000170.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.3033_3032	p.F1012fs	0.009:1.000	NULL	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_GDC-P	-	no_errors
HCRTR1	0	genome.wustl.edu	37	1	32089153	32089153	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	32089153	32089153	G	A	SNP	HCRTR1	NM_001525.2	human	genbank	58_37c	+1	reviewed	silent	c.768	p.R256	0.995	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
HIST1H2BJ	0	genome.wustl.edu	37	6	27100352	27100352	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	27100352	27100352	T	G	SNP	HIST1H2BJ	NM_021058.3	human	genbank	58_37c	-1	reviewed	missense	c.178	p.M60L	1.000	HMMSmart_SM00427,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00427,PatternScan_HISTONE_H2B,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HNF1A	0	genome.wustl.edu	37	12	121434630	121434631	+	Frame_Shift_Ins	INS	-	-	TCATTCAT	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	121434630	121434631	-	TCATTCAT	INS	HNF1A	ENST00000344370	human	ensembl	58_37c	+1	known	frame_shift_ins	c.1394_1395	p.F469fs	0.006:0.017	HMMPfam_HNF-1B_C	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_HNF-1B_C,HMMPfam_HNF-1A_C,HMMPfam_HNF-1_N,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1,superfamily_Dimerization cofactor of HNF-1 alpha	-	no_errors
HYDIN	0	genome.wustl.edu	37	16	70954761	70954761	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	70954761	70954761	C	A	SNP	HYDIN	NM_032821.2	human	genbank	58_37c	-1	validated	missense	c.7515	p.R2505S	0.422	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KALRN	0	genome.wustl.edu	37	3	124174098	124174098	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	124174098	124174098	G	A	SNP	KALRN	ENST00000354186	human	ensembl	58_37c	+1	known	missense	c.3527	p.R1176Q	0.964	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_SH3_2,HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
KIAA0528	0	genome.wustl.edu	37	12	22627752	22627752	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	22627752	22627752	G	C	SNP	KIAA0528	NM_014802.1	human	genbank	58_37c	-1	predicted	nonsense	c.1976	p.S659*	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
KIAA1217	0	genome.wustl.edu	37	10	24833030	24833030	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	10	24833030	24833030	G	T	SNP	KIAA1217	NM_019590.3	human	genbank	58_37c	+1	validated	missense	c.4831	p.D1611Y	1.000	NULL	NULL	-	no_errors
KIAA1328	0	genome.wustl.edu	37	18	34646885	34646885	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	34646885	34646885	A	C	SNP	KIAA1328	NM_020776.1	human	genbank	58_37c	+1	validated	silent	c.609	p.S203	0.000	NULL	NULL	-	no_errors
KRTAP5-8	0	genome.wustl.edu	37	11	71249117	71249118	+	In_Frame_Ins	INS	-	-	CCG	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	71249117	71249118	-	CCG	INS	KRTAP5-8	NM_021046.2	human	genbank	58_37c	+1	validated	in_frame_ins	c.16_17	p.C6in_frame_insSG	0.913:0.882	NULL	PatternScan_VWFC_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
LAMA4	0	genome.wustl.edu	37	6	112575076	112575077	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	6	112575076	112575077	GA	-	DEL	LAMA4	NM_001105208.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.277_276	p.P93fs	0.000:0.000	NULL	NULL	-	no_errors
LOC145820	0	genome.wustl.edu	37	15	96050741	96050742	+	RNA	INS	-	-	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	96050741	96050742	-	T	INS	LOC145820	NR_027132.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000:0.149	-	-	-	no_errors
LOC220594	0	genome.wustl.edu	37	17	18422903	18422903	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	18422903	18422903	G	C	SNP	LOC220594	NR_003554.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
MAN1A2	0	genome.wustl.edu	37	1	118039456	118039456	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	118039456	118039456	C	T	SNP	MAN1A2	ENST00000449370	human	ensembl	58_37c	+1	known	missense	c.554	p.T185I	1.000	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases	HMMPfam_Glyco_hydro_47,superfamily_Seven-hairpin glycosidases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
MGAT5	0	genome.wustl.edu	37	2	135206253	135206253	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	135206253	135206253	C	T	SNP	MGAT5	NM_002410.3	human	genbank	58_37c	+1	validated	silent	c.2061	p.A687	1.000	NULL	NULL	-	no_errors
MLL2	0	genome.wustl.edu	37	12	49444310	49444310	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	49444310	49444310	G	A	SNP	MLL2	NM_003482.3	human	genbank	58_37c	-1	validated	missense	c.3061	p.P1021S	0.557	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124824739	124824740	+	Frame_Shift_Ins	INS	-	-	GCCG	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	124824739	124824740	-	GCCG	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.5521_5520	p.S1840fs	1.000:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NPAS2	0	genome.wustl.edu	37	2	101594255	101594255	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	101594255	101594255	G	C	SNP	NPAS2	NM_002518.3	human	genbank	58_37c	+1	reviewed	missense	c.1476	p.M492I	0.826	NULL	HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,superfamily_HLH_basic,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785	-	no_errors
NRK	0	genome.wustl.edu	37	X	105168991	105168991	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	105168991	105168991	C	A	SNP	NRK	NM_198465.2	human	genbank	58_37c	+1	validated	missense	c.3280	p.P1094T	0.000	NULL	HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_p53-like transcription factors,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NUP54	0	genome.wustl.edu	37	4	77038880	77038881	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	4	77038880	77038881	AA	-	DEL	NUP54	NM_017426.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1332_1331	p.F444fs	1.000:1.000	NULL	NULL	-	no_errors
ODZ4	0	genome.wustl.edu	37	11	78381001	78381001	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	78381001	78381001	A	G	SNP	ODZ4	NM_001098816.2	human	genbank	58_37c	-1	validated	missense	c.6389	p.I2130T	1.000	NULL	HMMPfam_NHL,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_TolB_C,superfamily_SSF57196	-	no_errors
OR4N5	0	genome.wustl.edu	37	14	20612251	20612251	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	14	20612251	20612251	C	G	SNP	OR4N5	NM_001004724.1	human	genbank	58_37c	+1	provisional	silent	c.357	p.A119	0.984	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHGA1	0	genome.wustl.edu	37	5	140712271	140712271	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	140712271	140712271	G	A	SNP	PCDHGA1	NM_018912.2	human	genbank	58_37c	+1	reviewed	missense	c.2020	p.D674N	0.981	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PDCL	0	genome.wustl.edu	37	9	125588988	125588988	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	9	125588988	125588988	G	T	SNP	PDCL	NM_005388.3	human	genbank	58_37c	-1	reviewed	missense	c.79	p.H27N	0.461	NULL	HMMPfam_Phosducin,superfamily_Thioredoxin-like	-	no_errors
PKD1P1	0	genome.wustl.edu	37	16	16418942	16418942	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	16418942	16418942	G	C	SNP	PKD1P1	XR_078513.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
PLA2G4D	0	genome.wustl.edu	37	15	42379619	42379619	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	42379619	42379619	G	T	SNP	PLA2G4D	NM_178034.3	human	genbank	58_37c	-1	validated	missense	c.134	p.P45H	0.860	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FabD/lysophospholipase-like	-	no_errors
PMP2	0	genome.wustl.edu	37	8	82355662	82355662	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	82355662	82355662	C	A	SNP	PMP2	NM_002677.3	human	genbank	58_37c	-1	validated	missense	c.370	p.V124L	0.900	HMMPfam_Lipocalin,superfamily_Lipocalins	PatternScan_FABP,HMMPfam_Lipocalin,superfamily_Lipocalins	-	no_errors
PRAMEF11	0	genome.wustl.edu	37	1	12888424	12888424	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	12888424	12888424	A	G	SNP	PRAMEF11	ENST00000331684	human	ensembl	58_37c	-1	known	missense	c.100	p.C34R	0.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRKCE	0	genome.wustl.edu	37	2	46313346	46313346	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	46313346	46313346	G	A	SNP	PRKCE	NM_005400.2	human	genbank	58_37c	+1	reviewed	splice_site	c.1438-1	e11-1	1.000	-	-	-	no_errors
PRPF8	0	genome.wustl.edu	37	17	1582137	1582137	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	1582137	1582137	C	T	SNP	PRPF8	NM_006445.3	human	genbank	58_37c	-1	reviewed	silent	c.1638	p.L546	0.994	HMMPfam_PROCN	HMMPfam_Mov34,HMMSmart_SM00232,HMMPfam_PRO8NT,HMMPfam_PROCN,HMMPfam_PROCT,HMMPfam_U6-snRNA_bdg,HMMPfam_U5_2-snRNA_bdg,HMMPfam_RRM_4	-	no_errors
PRSS55	0	genome.wustl.edu	37	8	10383206	10383206	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	10383206	10383206	A	G	SNP	PRSS55	NM_198464.2	human	genbank	58_37c	+1	validated	silent	c.111	p.G37	0.000	NULL	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PSD3	0	genome.wustl.edu	37	8	18457916	18457916	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	18457916	18457916	G	T	SNP	PSD3	NM_015310.3	human	genbank	58_37c	-1	validated	silent	c.2439	p.T813	0.994	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
PSG2	0	genome.wustl.edu	37	19	43585335	43585335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	43585335	43585335	G	A	SNP	PSG2	NM_031246.2	human	genbank	58_37c	-1	validated	missense	c.128	p.P43L	0.005	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
RAB33A	0	genome.wustl.edu	37	X	129318289	129318289	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	129318289	129318289	C	A	SNP	RAB33A	NM_004794.2	human	genbank	58_37c	+1	reviewed	missense	c.289	p.R97S	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RAI1	0	genome.wustl.edu	37	17	17697094	17697096	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	17697094	17697096	CAG	-	DEL	RAI1	NM_030665.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.832_834	p.Q281in_frame_del	0.831:0.157:0.050	NULL	HMMSmart_SM00249	-	no_errors
RBM27	0	genome.wustl.edu	37	5	145651050	145651050	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	5	145651050	145651050	C	T	SNP	RBM27	NM_018989.1	human	genbank	58_37c	+1	validated	missense	c.2801	p.A934V	1.000	NULL	HMMSmart_RRM,HMMPfam_zf-CCCH,superfamily_SSF101233,superfamily_SSF54928	-	no_errors
RFPL1S	0	genome.wustl.edu	37	22	29833558	29833558	+	RNA	SNP	T	T	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	22	29833558	29833558	T	C	SNP	RFPL1S	NR_002727.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
RIPK2	0	genome.wustl.edu	37	8	90777697	90777697	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	90777697	90777697	C	T	SNP	RIPK2	NM_003821.5	human	genbank	58_37c	+1	reviewed	silent	c.456	p.I152	1.000	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMPfam_CARD,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_DEATH domain,HMMPfam_Pkinase	-	no_errors
RPA2	0	genome.wustl.edu	37	1	28233517	28233517	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	28233517	28233517	C	A	SNP	RPA2	NM_002946.3	human	genbank	58_37c	-1	provisional	missense	c.255	p.K85N	1.000	HMMPfam_tRNA_anti,superfamily_Nucleic acid-binding proteins	"HMMPfam_tRNA_anti,HMMPfam_RPA_C,superfamily_Nucleic acid-binding proteins,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
RYR2	0	genome.wustl.edu	37	1	237580371	237580371	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	237580371	237580371	G	A	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	missense	c.796	p.A266T	1.000	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SHISA7	0	genome.wustl.edu	37	19	55952073	55952073	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	55952073	55952073	C	T	SNP	SHISA7	NM_001145176.1	human	genbank	58_37c	-1	validated	missense	c.731	p.R244Q	0.999	NULL	NULL	-	no_errors
SHROOM4	0	genome.wustl.edu	37	X	50350758	50350759	+	In_Frame_Ins	INS	-	-	TGCTGCTGCTGT	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	50350758	50350759	-	TGCTGCTGCTGT	INS	SHROOM4	NM_020717.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.3384_3383	p.1129in_frame_insQQQQ	0.000:0.000	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SLC22A14	0	genome.wustl.edu	37	3	38347782	38347782	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	38347782	38347782	T	A	SNP	SLC22A14	NM_004803.3	human	genbank	58_37c	+1	validated	missense	c.265	p.F89I	0.207	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC30A8	0	genome.wustl.edu	37	8	118165274	118165274	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	118165274	118165274	G	C	SNP	SLC30A8	NM_173851.2	human	genbank	58_37c	+1	reviewed	silent	c.363	p.L121	1.000	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors
SLC9A10	0	genome.wustl.edu	37	3	111983118	111983118	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	3	111983118	111983118	A	T	SNP	SLC9A10	NM_183061.1	human	genbank	58_37c	-1	validated	missense	c.951	p.H317Q	0.042	HMMPfam_Na_H_Exchanger	HMMPfam_cNMP_binding,HMMPfam_Ion_trans,HMMPfam_Na_H_Exchanger,superfamily_cAMP-binding domain-like,PatternScan_WD_REPEATS_1,superfamily_Voltage-gated potassium channels	-	no_errors
SLFN12L	0	genome.wustl.edu	37	17	33802086	33802086	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	17	33802086	33802086	G	T	SNP	SLFN12L	NM_001145027.1	human	genbank	58_37c	-1	validated	nonsense	c.1710	p.Y570*	0.010	NULL	HMMPfam_AAA_4	-	no_errors
SMAD4	0	genome.wustl.edu	37	18	48575132	48575132	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	18	48575132	48575132	T	G	SNP	SMAD4	NM_005359.5	human	genbank	58_37c	+1	reviewed	missense	c.326	p.L109R	1.000	HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD MH1 domain	HMMPfam_MH2,HMMSmart_SM00524,HMMPfam_MH1,HMMSmart_SM00523,superfamily_SMAD/FHA domain,superfamily_SMAD MH1 domain	-	no_errors
SMARCA1	0	genome.wustl.edu	37	X	128641922	128641922	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	X	128641922	128641922	G	T	SNP	SMARCA1	NM_003069.3	human	genbank	58_37c	-1	reviewed	missense	c.962	p.S321Y	1.000	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMSmart_SM00717,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_Homeodomain-like,HMMSmart_SM00487,HMMPfam_HAND,superfamily_HAND domain of the nucleosome remodeling ATPase ISWI,HMMPfam_SLIDE,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SORL1	0	genome.wustl.edu	37	11	121458742	121458742	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	121458742	121458742	G	A	SNP	SORL1	NM_003105.4	human	genbank	58_37c	+1	reviewed	silent	c.3828	p.T1276	0.000	HMMSmart_SM00192,superfamily_LDL receptor-like module	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_COPPER_BLUE,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00602,superfamily_Fibronectin type III,PatternScan_EGF_2,superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,superfamily_YWTD domain	-	no_errors
SSFA2	0	genome.wustl.edu	37	2	182766619	182766619	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	182766619	182766619	C	A	SNP	SSFA2	NM_001130445.1	human	genbank	58_37c	+1	validated	missense	c.839	p.T280K	1.000	NULL	NULL	-	no_errors
TARS2	0	genome.wustl.edu	37	1	150469022	150469022	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	1	150469022	150469022	C	T	SNP	TARS2	NM_025150.3	human	genbank	58_37c	+1	provisional	missense	c.839	p.S280F	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit	HMMPfam_tRNA-synt_2b,HMMPfam_TGS,HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd,superfamily_TGS-like,HMMPfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_SSF55681	-	no_errors
TBC1D4	0	genome.wustl.edu	37	13	75936460	75936460	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	13	75936460	75936460	C	T	SNP	TBC1D4	NM_014832.2	human	genbank	58_37c	-1	validated	missense	c.782	p.G261E	0.000	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors
TG	0	genome.wustl.edu	37	8	133910025	133910025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	133910025	133910025	G	A	SNP	TG	NM_003235.4	human	genbank	58_37c	+1	reviewed	missense	c.3133	p.G1045R	0.005	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like	-	no_errors
TG	0	genome.wustl.edu	37	8	133953777	133953777	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	133953777	133953777	G	C	SNP	TG	NM_003235.4	human	genbank	58_37c	+1	reviewed	missense	c.5223	p.Q1741H	0.200	NULL	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMPfam_COesterase,HMMPfam_GCC2_GCC3,PatternScan_CARBOXYLESTERASE_B_2,superfamily_alpha/beta-Hydrolases,superfamily_TNF receptor-like	-	no_errors
THAP11	0	genome.wustl.edu	37	16	67876824	67876826	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	16	67876824	67876826	CAG	-	DEL	THAP11	NM_020457.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.367_369	p.Q126in_frame_del	0.009:0.002:0.000	NULL	HMMPfam_THAP,HMMSmart_DM3	-	no_errors
TMED2	0	genome.wustl.edu	37	12	124074976	124074976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	12	124074976	124074976	G	A	SNP	TMED2	NM_006815.3	human	genbank	58_37c	+1	validated	missense	c.461	p.R154Q	1.000	HMMPfam_EMP24_GP25L	HMMPfam_EMP24_GP25L,superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
TMEM87A	0	genome.wustl.edu	37	15	42531871	42531871	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	42531871	42531871	C	T	SNP	TMEM87A	NM_015497.3	human	genbank	58_37c	-1	validated	missense	c.681	p.M227I	1.000	HMMPfam_Lung_7-TM_R	HMMPfam_Lung_7-TM_R	-	no_errors
TMOD3	0	genome.wustl.edu	37	15	52181319	52181319	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	15	52181319	52181319	G	A	SNP	TMOD3	NM_014547.4	human	genbank	58_37c	+1	validated	missense	c.473	p.G158D	1.000	HMMPfam_Tropomodulin	HMMPfam_Tropomodulin,superfamily_SSF52047	-	no_errors
TRIM77	0	genome.wustl.edu	37	11	89450625	89450625	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	11	89450625	89450625	T	A	SNP	TRIM77	XM_002343107.1	human	genbank	58_37c	+1	model	missense	c.938	p.L313H	0.000	NULL	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box	-	no_errors
TTN	0	genome.wustl.edu	37	2	179408789	179408789	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	2	179408789	179408789	C	A	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.88372	p.A29458S	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UGDH	0	genome.wustl.edu	37	4	39505533	39505533	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	4	39505533	39505533	C	T	SNP	UGDH	NM_003359.3	human	genbank	58_37c	-1	reviewed	missense	c.1336	p.D446N	1.000	HMMPfam_UDPG_MGDP_dh_C,superfamily_UDP-Glc/GDP-Man_DH_C	HMMPfam_UDPG_MGDP_dh_N,superfamily_6DGDH_C_like,HMMPfam_UDPG_MGDP_dh,HMMPfam_UDPG_MGDP_dh_C,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_NAD(P)-bd	-	no_errors
WISP1	0	genome.wustl.edu	37	8	134237778	134237778	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	8	134237778	134237778	C	A	SNP	WISP1	NM_003882.2	human	genbank	58_37c	+1	reviewed	silent	c.756	p.R252	1.000	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	HMMPfam_IGFBP,HMMSmart_SM00121,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,PatternScan_IGFBP_N_1	-	no_errors
ZNF544	0	genome.wustl.edu	37	19	58773419	58773419	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A25B-01A-11D-A167-09	TCGA-A2-A25B-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6e839eaf-1dbb-43f5-8846-c980e05540c7	c16cf182-b4b2-42c0-a2b1-ce071638de2f	19	58773419	58773419	A	G	SNP	ZNF544	NM_014480.2	human	genbank	58_37c	+1	provisional	missense	c.1447	p.K483E	0.001	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
