Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA11P	0	genome.wustl.edu	37	4	420491	420491	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	4	420491	420491	C	A	SNP	ABCA11P	NR_002451.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.996	-	-	-	pseudogene
ABCA8	0	genome.wustl.edu	37	17	66871785	66871785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	17	66871785	66871785	C	T	SNP	ABCA8	NM_007168.2	human	genbank	58_37c	-1	reviewed	missense	c.4340	p.R1447Q	0.997	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ALS2	0	genome.wustl.edu	37	2	202622362	202622362	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	202622362	202622362	C	T	SNP	ALS2	NM_020919.3	human	genbank	58_37c	-1	reviewed	missense	c.1234	p.E412K	1.000	NULL	superfamily_DBL homology domain (DH-domain),PatternScan_RCC1_2,HMMPfam_VPS9,HMMPfam_MORN,HMMSmart_SM00698,superfamily_RCC1/BLIP-II,superfamily_VPS9 domain (Pfam 02204),superfamily_PH domain-like,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	-	no_errors
ANKRD34B	0	genome.wustl.edu	37	5	79855107	79855107	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	5	79855107	79855107	G	A	SNP	ANKRD34B	NM_001004441.2	human	genbank	58_37c	-1	validated	silent	c.732	p.H244	0.814	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ARHGAP28	0	genome.wustl.edu	37	18	6890051	6890051	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	18	6890051	6890051	C	A	SNP	ARHGAP28	NM_001010000.1	human	genbank	58_37c	+1	validated	silent	c.1224	p.R408	0.993	HMMSmart_RhoGAP,superfamily_Rho_GAP	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP	-	no_errors
B3GALTL	0	genome.wustl.edu	37	13	31897924	31897924	+	Silent	SNP	C	C	T	rs139927237	byFrequency	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	13	31897924	31897924	C	T	SNP	B3GALTL	NM_194318.3	human	genbank	58_37c	+1	reviewed	silent	c.1221	p.L407	0.567	HMMPfam_Fringe	PatternScan_ER_TARGET,HMMPfam_Fringe	-	no_errors
BRAP	0	genome.wustl.edu	37	12	112121094	112121094	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	12	112121094	112121094	C	T	SNP	BRAP	NM_006768.3	human	genbank	58_37c	-1	reviewed	missense	c.100	p.E34K	1.000	NULL	HMMPfam_zf-UBP,HMMSmart_ZnF_UBP,HMMSmart_RING,HMMPfam_BRAP2,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
CASC5	0	genome.wustl.edu	37	15	40913336	40913336	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	15	40913336	40913336	C	T	SNP	CASC5	NM_170589.3	human	genbank	58_37c	+1	validated	nonsense	c.952	p.Q318*	1.000	NULL	NULL	-	no_errors
CEP55	0	genome.wustl.edu	37	10	95279501	95279501	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	10	95279501	95279501	A	G	SNP	CEP55	NM_001127182.1	human	genbank	58_37c	+1	validated	silent	c.1128	p.Q376	0.945	NULL	NULL	-	no_errors
CSPG4	0	genome.wustl.edu	37	15	75967903	75967903	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	15	75967903	75967903	C	G	SNP	CSPG4	NM_001897.4	human	genbank	58_37c	-1	reviewed	missense	c.6957	p.Q2319H	1.000	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
CWC27	0	genome.wustl.edu	37	5	64267547	64267547	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	5	64267547	64267547	G	A	SNP	CWC27	NM_005869.2	human	genbank	58_37c	+1	validated	missense	c.1060	p.D354N	0.998	NULL	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like	-	no_errors
DCHS1	0	genome.wustl.edu	37	11	6662745	6662746	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	11	6662745	6662746	-	CAG	INS	DCHS1	NM_003737.2	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.100_99	p.33in_frame_insL	1.000:1.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
E2F8	0	genome.wustl.edu	37	11	19256462	19256462	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	11	19256462	19256462	C	T	SNP	E2F8	NM_024680.2	human	genbank	58_37c	-1	validated	missense	c.595	p.E199K	1.000	NULL	"HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ENSG00000248583	0	genome.wustl.edu	37	4	49490448	49490450	+	Splice_Site	DEL	TAC	TAC	-	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	TAC	TAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	4	49490448	49490450	TAC	-	DEL	ENSG00000248583	ENST00000399720	human	ensembl	58_37c	-1	known	splice_site_del	c.NULL	NULL	0.054:0.048:0.031	-	-	-	no_coding_region:pseudogene
ENSG00000251705	0	genome.wustl.edu	37	Y	10037842	10037842	+	RNA	SNP	A	A	G	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	Y	10037842	10037842	A	G	SNP	ENSG00000251705	ENST00000515896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
FAM134A	0	genome.wustl.edu	37	2	220045923	220045923	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	220045923	220045923	G	A	SNP	FAM134A	NM_024293.4	human	genbank	58_37c	+1	validated	silent	c.780	p.K260	1.000	NULL	NULL	-	no_errors
FAM179B	0	genome.wustl.edu	37	14	45513889	45513889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	14	45513889	45513889	G	A	SNP	FAM179B	NM_015091.2	human	genbank	58_37c	+1	validated	missense	c.3970	p.D1324N	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
FBXW4	0	genome.wustl.edu	37	10	103371430	103371430	+	Silent	SNP	G	G	A	rs142927609	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	10	103371430	103371430	G	A	SNP	FBXW4	NM_022039.3	human	genbank	58_37c	-1	reviewed	silent	c.1074	p.Y358	0.090	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,HMMPfam_F-box,HMMSmart_FBOX,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_SSF81383	-	no_errors
FHOD3	0	genome.wustl.edu	37	18	34359414	34359414	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	18	34359414	34359414	G	A	SNP	FHOD3	NM_025135.2	human	genbank	58_37c	+1	validated	missense	c.4241	p.R1414Q	1.000	NULL	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd,superfamily_ARM-type_fold	-	no_errors
FLG	0	genome.wustl.edu	37	1	152282658	152282658	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	1	152282658	152282658	G	A	SNP	FLG	NM_002016.1	human	genbank	58_37c	-1	reviewed	silent	c.4704	p.A1568	0.000	HMMPfam_Filaggrin	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
HECTD2	0	genome.wustl.edu	37	10	93256090	93256090	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	10	93256090	93256090	C	T	SNP	HECTD2	NM_182765.3	human	genbank	58_37c	+1	validated	silent	c.1641	p.I547	1.000	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	-	no_errors
HK2	0	genome.wustl.edu	37	2	75117929	75117929	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	75117929	75117929	C	T	SNP	HK2	NM_000189.4	human	genbank	58_37c	+1	reviewed	missense	c.2615	p.A872V	1.000	HMMPfam_Hexokinase_2,superfamily_SSF53067	HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES,superfamily_SSF53067	-	no_errors
HMGB3	0	genome.wustl.edu	37	X	150155775	150155775	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	X	150155775	150155775	G	T	SNP	HMGB3	NM_005342.2	human	genbank	58_37c	+1	validated	missense	c.465	p.K155N	1.000	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box,PatternScan_HMG_BOX_1	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152189272	152189272	+	Silent	SNP	G	A	A	rs75630672	byFrequency	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	1	152189272	152189272	G	A	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	silent	c.4833	p.Y1611	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
INTS4L2	0	genome.wustl.edu	37	7	65150713	65150714	+	RNA	INS	-	-	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	7	65150713	65150714	-	A	INS	INTS4L2	XR_079497.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000:0.995	-	-	-	pseudogene
KDM2B	0	genome.wustl.edu	37	12	121878877	121878877	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	12	121878877	121878877	C	A	SNP	KDM2B	NM_032590.4	human	genbank	58_37c	-1	reviewed	silent	c.3444	p.L1148	0.991	HMMSmart_SM00367,superfamily_RNI-like	HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,HMMSmart_SM00367,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,superfamily_Clavaminate synthase-like,superfamily_RNI-like	-	no_errors
KDM5C	0	genome.wustl.edu	37	X	53224485	53224486	+	In_Frame_Ins	INS	-	-	GGT	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	X	53224485	53224486	-	GGT	INS	KDM5C	NM_004187.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.3228_3227	p.1077in_frame_insP	1.000:1.000	HMMPfam_PLU-1	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00249,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PLU-1,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
KDM5C	0	genome.wustl.edu	37	X	53224486	53224487	+	Frame_Shift_Ins	INS	-	-	CCTGTCG	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	X	53224486	53224487	-	CCTGTCG	INS	KDM5C	NM_004187.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.3227_3226	p.L1076fs	1.000:0.998	HMMPfam_PLU-1	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,HMMSmart_SM00249,HMMSmart_SM00558,HMMPfam_JmjN,HMMSmart_SM00545,HMMPfam_zf-C5HC2,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,HMMPfam_PLU-1,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
LOC100132858	0	genome.wustl.edu	37	7	35442	35443	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	7	35442	35443	-	TGC	INS	LOC100132858	XM_001715131.2	human	genbank	58_37c	-1	model	in_frame_ins	c.255_254	p.86in_frame_insQ	0.128:0.044	NULL	NULL	-	no_errors
LOC100289350	0	genome.wustl.edu	37	2	91924905	91924905	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	91924905	91924905	C	T	SNP	LOC100289350	XR_078684.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.994	-	-	-	pseudogene
LOC728683	0	genome.wustl.edu	37	9	68372284	68372284	+	Missense_Mutation	SNP	T	G	G	rs140186551	byCluster	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	9	68372284	68372284	T	G	SNP	LOC728683	XM_001128151.2	human	genbank	58_37c	-1	model	missense	c.146	p.E49A	0.047	NULL	HMMPfam_7tm_1	-	no_errors
LRP1B	0	genome.wustl.edu	37	2	141283540	141283540	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	141283540	141283540	G	A	SNP	LRP1B	NM_018557.2	human	genbank	58_37c	-1	validated	silent	c.7899	p.F2633	1.000	superfamily_LDL_rcpt_classA_cys-rich,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMPfam_NHL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
MAGI1	0	genome.wustl.edu	37	3	65425560	65425561	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	3	65425560	65425561	-	CTG	INS	MAGI1	NM_001033057.1	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.1264_1263	p.421in_frame_insQ	0.208:0.001	NULL	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	G	C	rs78985720	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	3	195505836	195505836	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.12231	p.H4077Q	0.981	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124887058	124887059	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	12	124887058	124887059	-	GCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1532_1531	p.511in_frame_insQ	0.999:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NFE2L2	0	genome.wustl.edu	37	2	178098803	178098803	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	178098803	178098803	C	T	SNP	NFE2L2	ENST00000449627	human	ensembl	58_37c	-1	known	splice_site	c.193+1	e1+1	1.000	-	-	-	no_stop_codon:bad_bp_length_for_coding_region
NUDT11	0	genome.wustl.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	X	51239296	51239309	TCCTCGAGGCAGCC	-	DEL	NUDT11	ENST00000375992	human	ensembl	58_37c	-1	known	frame_shift_del	c.1	p.M1fs	0.928	NULL	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase,PatternScan_NUDIX	-	no_errors
OR11H1	0	genome.wustl.edu	37	22	16449539	16449539	+	Missense_Mutation	SNP	A	A	G	rs61969156	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	22	16449539	16449539	A	G	SNP	OR11H1	NM_001005239.1	human	genbank	58_37c	-1	provisional	missense	c.266	p.V89A	0.234	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCGF1	0	genome.wustl.edu	37	2	74734188	74734188	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	74734188	74734188	G	A	SNP	PCGF1	NM_032673.2	human	genbank	58_37c	-1	validated	silent	c.180	p.I60	0.996	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLVAP	0	genome.wustl.edu	37	19	17476399	17476399	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	19	17476399	17476399	G	T	SNP	PLVAP	NM_031310.1	human	genbank	58_37c	-1	provisional	missense	c.875	p.A292E	0.000	HMMPfam_PV-1	HMMPfam_PV-1	-	no_errors
PRKAG3	0	genome.wustl.edu	37	2	219692583	219692583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	2	219692583	219692583	C	T	SNP	PRKAG3	NM_017431.2	human	genbank	58_37c	-1	reviewed	missense	c.793	p.E265K	1.000	HMMPfam_CBS	HMMPfam_CBS,HMMSmart_SM00116,superfamily_CBS-domain	-	no_errors
QSOX2	0	genome.wustl.edu	37	9	139101011	139101011	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	9	139101011	139101011	C	T	SNP	QSOX2	NM_181701.3	human	genbank	58_37c	-1	validated	missense	c.1660	p.V554M	1.000	NULL	HMMPfam_Evr1_Alr,superfamily_Evr1_Alr,superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	-	no_errors
RBMXL3	0	genome.wustl.edu	37	X	114424746	114424746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	X	114424746	114424746	G	A	SNP	RBMXL3	NM_001145346.1	human	genbank	58_37c	+1	validated	missense	c.742	p.D248N	0.001	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
RUNX1	0	genome.wustl.edu	37	21	36252994	36252995	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	21	36252994	36252995	-	C	INS	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.368_367	p.D123fs	0.999:1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SDK2	0	genome.wustl.edu	37	17	71375348	71375348	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	17	71375348	71375348	C	A	SNP	SDK2	NM_001144952.1	human	genbank	58_37c	-1	provisional	missense	c.4948	p.D1650Y	0.999	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SFI1	0	genome.wustl.edu	37	22	32003986	32003986	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	22	32003986	32003986	G	T	SNP	SFI1	NM_001007467.1	human	genbank	58_37c	+1	validated	missense	c.2221	p.A741S	0.002	NULL	NULL	-	no_errors
SHROOM4	0	genome.wustl.edu	37	X	50350758	50350759	+	In_Frame_Ins	INS	-	-	TGCTGCTGCTGT	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	X	50350758	50350759	-	TGCTGCTGCTGT	INS	SHROOM4	NM_020717.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.3384_3383	p.1129in_frame_insQQQQ	0.000:0.000	NULL	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_ASD2,HMMPfam_ASD1	-	no_errors
SLC10A4	0	genome.wustl.edu	37	4	48486056	48486056	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	4	48486056	48486056	G	A	SNP	SLC10A4	NM_152679.3	human	genbank	58_37c	+1	validated	missense	c.478	p.A160T	0.000	HMMPfam_SBF	HMMPfam_SBF	-	no_errors
SLC4A2	0	genome.wustl.edu	37	7	150773425	150773425	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	7	150773425	150773425	G	A	SNP	SLC4A2	NM_003040.3	human	genbank	58_37c	+1	validated	missense	c.3697	p.E1233K	0.999	NULL	HMMPfam_HCO3_cotransp,HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-	no_errors
TOM1	0	genome.wustl.edu	37	22	35713945	35713945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	22	35713945	35713945	C	T	SNP	TOM1	NM_001135732.1	human	genbank	58_37c	+1	reviewed	missense	c.128	p.T43M	1.000	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS	HMMPfam_VHS,HMMPfam_GAT,superfamily_ENTH_VHS,HMMSmart_VHS,superfamily_SSF89009	-	no_errors
TPH2	0	genome.wustl.edu	37	12	72338138	72338138	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	12	72338138	72338138	A	G	SNP	TPH2	NM_173353.3	human	genbank	58_37c	+1	reviewed	missense	c.320	p.E107G	1.000	HMMPfam_ACT,superfamily_SSF55021	HMMPfam_ACT,PatternScan_BIOPTERIN_HYDROXYL,HMMPfam_Biopterin_H,superfamily_Aaa_hydroxylase,superfamily_SSF55021	-	no_errors
UMODL1	0	genome.wustl.edu	37	21	43496126	43496126	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	21	43496126	43496126	C	T	SNP	UMODL1	NM_173568.3	human	genbank	58_37c	+1	validated	missense	c.89	p.S30F	0.999	NULL	HMMPfam_SEA,PatternScan_ASX_HYDROXYL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMSmart_SM00179,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_WAP,HMMSmart_SM00217,superfamily_Elafin-like,superfamily_Fibronectin type III,HMMPfam_EMI,HMMPfam_EGF_CA,PatternScan_4_DISULFIDE_CORE,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
USP32	0	genome.wustl.edu	37	17	58348824	58348824	+	Missense_Mutation	SNP	A	A	G	rs138623701	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	17	58348824	58348824	A	G	SNP	USP32	NM_032582.3	human	genbank	58_37c	-1	validated	missense	c.590	p.I197T	1.000	superfamily_SSF47473	HMMPfam_UCH,HMMSmart_EFh,HMMSmart_DUSP,HMMPfam_DUF1055,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473,superfamily_SSF54001	-	no_errors
ZYG11A	0	genome.wustl.edu	37	1	53326444	53326444	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A7-A26E-01A-11D-A167-09	TCGA-A7-A26E-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	73651880-cfbd-4f8d-8031-a14b3ac65454	a411cfe0-378e-4919-94e6-4c3beb8f61ca	1	53326444	53326444	G	A	SNP	ZYG11A	ENST00000371528	human	ensembl	58_37c	+1	known	silent	c.1050	p.L350	1.000	NULL	superfamily_ARM repeat,superfamily_RNI-like	-	no_errors
