Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BARHL2	343472	genome.wustl.edu	37	1	91182534	91182534	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	91182534	91182534	C	T	SNP	BARHL2	NM_020063.1	human	genbank	58_37c	-1	validated	silent	c.219	p.P73	1.000	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68842438	68842439	+	In_Frame_Ins	INS	-	-	CCC	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	16	68842438	68842439	-	CCC	INS	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.499_500	p.E167in_frame_insAQ	1.000:1.000	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
COMMD2	51122	genome.wustl.edu	37	3	149470040	149470042	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	3	149470040	149470042	GAA	-	DEL	COMMD2	NM_016094.2	human	genbank	58_37c	-1	validated	in_frame_del	c.102_100	p.F34in_frame_del	1.000:1.000:1.000	HMMPfam_HCaRG	HMMPfam_HCaRG	-	no_errors
CR1	1378	genome.wustl.edu	37	1	207793390	207793390	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	207793390	207793390	C	G	SNP	CR1	NM_000651.4	human	genbank	58_37c	+1	reviewed	missense	c.7232	p.P2411R	0.995	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	-	no_errors
CUX1	1523	genome.wustl.edu	37	7	101838792	101838792	+	Silent	SNP	G	G	A	rs147937477	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	7	101838792	101838792	G	A	SNP	CUX1	NM_181552.2	human	genbank	58_37c	+1	reviewed	silent	c.1131	p.A377	0.669	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_CUT,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1	-	no_errors
CXorf65	158830	genome.wustl.edu	37	X	70323923	70323923	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	X	70323923	70323923	G	T	SNP	CXorf65	NM_001025265.2	human	genbank	58_37c	-1	validated	missense	c.466	p.R156S	0.088	NULL	NULL	-	no_errors
FARSB	10056	genome.wustl.edu	37	2	223436667	223436667	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	2	223436667	223436667	G	C	SNP	FARSB	NM_005687.3	human	genbank	58_37c	-1	reviewed	missense	c.1693	p.H565D	1.000	superfamily_Class II aaRS and biotin synthetases	HMMPfam_B3_4,superfamily_B3/B4 domain of PheRS PheT,HMMPfam_B5,superfamily_Putative DNA-binding domain,superfamily_Class II aaRS and biotin synthetases	-	no_errors
FMN2	56776	genome.wustl.edu	37	1	240370946	240370946	+	Missense_Mutation	SNP	C	C	T	rs193049501	by1000genomes	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	240370946	240370946	C	T	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	missense	c.2834	p.P945L	0.003	HMMSmart_FH2,HMMPfam_Drf_FH1	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
HNRPDL	9987	genome.wustl.edu	37	4	83350763	83350763	+	Silent	SNP	G	G	A	rs61737724	byFrequency;by1000genomes	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	4	83350763	83350763	G	A	SNP	HNRPDL	NM_031372.2	human	genbank	58_37c	-1	reviewed	silent	c.81	p.L27	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9018133	9018133	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	19	9018133	9018133	C	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.37805	p.R12602M	0.848	HMMPfam_SEA,superfamily_SEA domain	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC2	4583	genome.wustl.edu	37	11	1092321	1092321	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	11	1092321	1092321	C	T	SNP	MUC2	NM_002457.2	human	genbank	58_37c	+1	reviewed	silent	c.4140	p.Y1380	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_EGF_1,HMMPfam_C8	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195515003	195515003	+	Missense_Mutation	SNP	T	T	C	rs76196931	by1000genomes	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	3	195515003	195515003	T	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.3448	p.T1150A	0.003	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NPAS1	4861	genome.wustl.edu	37	19	47543707	47543707	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	19	47543707	47543707	G	C	SNP	NPAS1	NM_002517.2	human	genbank	58_37c	+1	reviewed	missense	c.968	p.S323T	0.998	HMMSmart_PAS,HMMPfam_PAS_3,superfamily_SSF55785	HMMSmart_PAS,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAC,superfamily_HLH_basic,HMMPfam_PAS_3,HMMPfam_PAS,superfamily_SSF55785	-	no_errors
OPA1	4976	genome.wustl.edu	37	3	193353241	193353243	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	3	193353241	193353243	AGG	-	DEL	OPA1	NM_130837.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.878_880	p.E294in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_Dynamin_N,HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OR10J1	26476	genome.wustl.edu	37	1	159410003	159410003	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	159410003	159410003	G	A	SNP	OR10J1	NM_012351.2	human	genbank	58_37c	+1	validated	missense	c.455	p.R152H	0.010	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PADI3	51702	genome.wustl.edu	37	1	17575713	17575713	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	17575713	17575713	G	A	SNP	PADI3	NM_016233.2	human	genbank	58_37c	+1	reviewed	silent	c.81	p.V27	1.000	superfamily_Cupredoxin,HMMPfam_PAD_N	superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909	-	no_errors
PFDN6	10471	genome.wustl.edu	37	6	33258127	33258127	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	6	33258127	33258127	A	G	SNP	PFDN6	NM_014260.2	human	genbank	58_37c	+1	validated	missense	c.160	p.N54D	1.000	HMMPfam_Prefoldin_2,superfamily_Prefoldin	HMMPfam_Prefoldin_2,superfamily_Prefoldin	-	no_errors
PRDM16	63976	genome.wustl.edu	37	1	3347638	3347638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	1	3347638	3347638	G	A	SNP	PRDM16	NM_022114.3	human	genbank	58_37c	+1	reviewed	missense	c.3484	p.A1162T	0.002	NULL	HMMSmart_SM00317,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_SET domain	-	no_errors
RNASE2	6036	genome.wustl.edu	37	14	21424383	21424383	+	Silent	SNP	G	G	A	rs142450661	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	14	21424383	21424383	G	A	SNP	RNASE2	NM_002934.2	human	genbank	58_37c	+1	validated	silent	c.453	p.P151	0.000	HMMPfam_RnaseA,HMMSmart_RNAse_Pc,superfamily_RNaseA	HMMPfam_RnaseA,HMMSmart_RNAse_Pc,PatternScan_RNASE_PANCREATIC,superfamily_RNaseA	-	no_errors
RYR1	6261	genome.wustl.edu	37	19	38976254	38976254	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	19	38976254	38976254	G	A	SNP	RYR1	NM_000540.2	human	genbank	58_37c	+1	reviewed	silent	c.4959	p.S1653	0.162	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SFXN2	118980	genome.wustl.edu	37	10	104489151	104489151	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	10	104489151	104489151	G	A	SNP	SFXN2	NM_178858.4	human	genbank	58_37c	+1	validated	silent	c.507	p.K169	1.000	HMMPfam_Mtc	HMMPfam_Mtc	-	no_errors
SNAP23	8773	genome.wustl.edu	37	15	42820532	42820533	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	15	42820532	42820533	TG	-	DEL	SNAP23	NM_003825.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.339_340	p.V114fs	0.775:0.991	HMMPfam_SNAP-25	HMMPfam_SNARE,HMMSmart_SM00397,HMMPfam_SNAP-25	-	no_errors
SNRNP35	11066	genome.wustl.edu	37	12	123950441	123950441	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	12	123950441	123950441	C	A	SNP	SNRNP35	NM_180699.2	human	genbank	58_37c	+1	reviewed	missense	c.369	p.D123E	1.000	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
SPACA1	81833	genome.wustl.edu	37	6	88769287	88769288	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-A8-A09V-01A-11D-A045-09	TCGA-A8-A09V-10A-01W-A055-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	818f1a34-17c5-409a-b5f5-4a8576db0d44	410ed951-300a-4227-bc61-52a1649301f6	6	88769287	88769288	CA	-	DEL	SPACA1	NM_030960.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.591_592	p.T198fs	1.000:1.000	NULL	NULL	-	no_errors
