Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
LOC100130134	0	genome.wustl.edu	36	X	89181766	89181766	+	RNA	SNP	C	C	G			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	X	89181766	89181766	C	G	SNP	LOC100130134	XR_037810.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene	77	0	0.00	17	57	77.03	7	0	0.00
PADI2	0	genome.wustl.edu	36	1	17291560	17291560	+	Silent	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	1	17291560	17291560	G	A	SNP	PADI2	NM_007365.2	human	genbank	54_36p	-1	reviewed	silent	c.585	p.P195	0.011	HMMPfam_PAD_M,superfamily_PAD_central	superfamily_Cupredoxin,HMMPfam_PAD,HMMPfam_PAD_N,HMMPfam_PAD_M,superfamily_PAD_central,superfamily_SSF55909	-	no_errors	94	1	1.03	47	28	37.33	40	10	20.00
NRAS	0	genome.wustl.edu	36	1	115058051	115058051	+	Missense_Mutation	SNP	T	T	A	rs121913255	unknown	TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	1	115058051	115058051	T	A	SNP	NRAS	NM_002524.3	human	genbank	54_36p	-1	reviewed	missense	c.183	p.Q61H	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	95	1	1.03	77	29	26.85	77	39	33.62
PYGO2	0	genome.wustl.edu	36	1	153198033	153198033	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	1	153198033	153198033	C	G	SNP	PYGO2	NM_138300.3	human	genbank	54_36p	-1	validated	missense	c.1067	p.R356P	0.995	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors	93	0	0.00	25	31	55.36	28	24	46.15
SHC1	0	genome.wustl.edu	36	1	153204838	153204838	+	Silent	SNP	C	C	G			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	1	153204838	153204838	C	G	SNP	SHC1	NM_183001.1	human	genbank	54_36p	-1	validated	silent	c.1428	p.S476	0.000	superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors	854	52	5.65	42	34	44.74	22	27	55.10
ARHGEF11	0	genome.wustl.edu	36	1	155220785	155220785	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	1	155220785	155220785	G	A	SNP	ARHGEF11	NM_198236.2	human	genbank	54_36p	-1	reviewed	missense	c.193	p.R65C	1.000	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMSmart_RGS,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_PH,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_SSF50729	-	no_errors	160	0	0.00	76	31	28.97	5	4	44.44
FAM5C	0	genome.wustl.edu	36	1	188334865	188334865	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	1	188334865	188334865	G	A	SNP	FAM5C	NM_199051.1	human	genbank	54_36p	-1	provisional	missense	c.1207	p.R403C	0.986	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors	77	1	1.28	14	11	42.31	NA	NA	NA
FAM5C	0	genome.wustl.edu	36	1	188517414	188517414	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	1	188517414	188517414	C	T	SNP	FAM5C	NM_199051.1	human	genbank	54_36p	-1	provisional	missense	c.326	p.R109H	1.000	HMMPfam_MACPF,HMMSmart_SM00457	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors	62	0	0.00	21	14	38.89	NA	NA	NA
KLHL18	0	genome.wustl.edu	36	3	47360205	47360205	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	3	47360205	47360205	T	C	SNP	KLHL18	NM_025010.4	human	genbank	54_36p	+1	validated	missense	c.1495	p.S499P	1.000	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors	112	0	0.00	67	49	42.24	13	14	51.85
PLXNB1	0	genome.wustl.edu	36	3	48426931	48426931	+	Silent	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	3	48426931	48426931	G	A	SNP	PLXNB1	NM_002673.1	human	genbank	54_36p	-1	validated	silent	c.5457	p.D1819	0.995	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,PatternScan_LIPOCALIN,HMMPfam_TIG,HMMSmart_SM00429,PatternScan_IG_MHC,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors	72	0	0.00	16	11	40.74	1	0	0.00
FEZF2	0	genome.wustl.edu	36	3	62331988	62331988	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	3	62331988	62331988	T	A	SNP	FEZF2	NM_018008.3	human	genbank	54_36p	-1	validated	missense	c.1064	p.H355L	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	98	0	0.00	52	33	38.82	NA	NA	NA
C6orf211	0	genome.wustl.edu	36	6	151817475	151817475	+	Silent	SNP	C	C	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	6	151817475	151817475	C	T	SNP	C6orf211	NM_024573.1	human	genbank	54_36p	+1	predicted	silent	c.141	p.H47	1.000	HMMPfam_DUF89,superfamily_DUF89	HMMPfam_DUF89,superfamily_DUF89	-	no_errors	87	0	0.00	52	24	31.58	8	7	46.67
CUL1	0	genome.wustl.edu	36	7	148085114	148085114	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	A	A			A	A	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	7	148085114	148085114	A	G	SNP	CUL1	NM_003592.2	human	genbank	54_36p	+1	validated	missense	c.422	p.N141S	1.000	HMMPfam_Cullin,superfamily_Cullin repeat	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors	73	0	0.00	17	43	71.67	10	47	82.46
FAM83A	0	genome.wustl.edu	36	8	124290957	124290957	+	3'UTR	SNP	G	G	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	8	124290957	124290957	G	T	SNP	FAM83A	NM_207006.4	human	genbank	54_36p	+1	validated	3_prime_untranslated_region	c.*40	NULL	0.000	-	-	-	no_errors	141	0	0.00	413	49	10.61	9	0	0.00
OGDHL	0	genome.wustl.edu	36	10	50636573	50636573	+	Silent	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	10	50636573	50636573	G	A	SNP	OGDHL	NM_018245.1	human	genbank	54_36p	-1	validated	silent	c.72	p.V24	0.001	NULL	HMMPfam_E1_dh,HMMPfam_Transket_pyr,superfamily_SSF52518	-	no_errors	36	0	0.00	20	8	28.57	NA	NA	NA
PTPN5	0	genome.wustl.edu	36	11	18718847	18718847	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	11	18718847	18718847	T	C	SNP	PTPN5	NM_006906.1	human	genbank	54_36p	-1	validated	missense	c.794	p.Y265C	0.865	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors	139	0	0.00	87	32	26.89	NA	NA	NA
ANO2	0	genome.wustl.edu	36	12	5542827	5542827	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	12	5542827	5542827	C	A	SNP	ANO2	NM_020373.2	human	genbank	54_36p	-1	validated	missense	c.2899	p.G967C	0.000	NULL	HMMPfam_DUF590	-	no_errors	379	0	0.00	96	57	37.01	NA	NA	NA
GUCY2C	0	genome.wustl.edu	36	12	14689506	14689506	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	12	14689506	14689506	T	A	SNP	GUCY2C	NM_004963.3	human	genbank	54_36p	-1	validated	missense	c.1721	p.N574I	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMSmart_SM00219,HMMPfam_ANF_receptor,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,PatternScan_GUANYLATE_CYCLASE_1,superfamily_Periplasmic binding protein-like I	-	no_errors	165	0	0.00	89	51	36.43	NA	NA	NA
RFC3	0	genome.wustl.edu	36	13	33307285	33307285	+	Silent	SNP	G	G	A			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	13	33307285	33307285	G	A	SNP	RFC3	NM_002915.3	human	genbank	54_36p	+1	reviewed	silent	c.810	p.R270	0.995	superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C	HMMSmart_SM00382,superfamily_DNA polymerase III clamp loader subunits C-terminal domain,HMMPfam_RFC-E_C,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	35	0	0.00	33	21	38.89	14	11	44.00
TBC1D21	0	genome.wustl.edu	36	15	71964459	71964459	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	15	71964459	71964459	G	C	SNP	TBC1D21	NM_153356.1	human	genbank	54_36p	+1	provisional	missense	c.541	p.E181Q	1.000	HMMSmart_TBC,superfamily_RabGAP_TBC	HMMSmart_TBC,superfamily_RabGAP_TBC	-	no_errors	164	3	1.78	75	44	36.97	NA	NA	NA
CLEC18B	0	genome.wustl.edu	36	16	73002259	73002259	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	16	73002259	73002259	T	C	SNP	CLEC18B	ENST00000268492	human	ensembl	54_36p	-1	known	missense	c.17	p.D6G	0.000	NULL	HMMPfam_Lectin_C,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_start_codon	18	2	10.00	2	8	80.00	0	1	100.00
TP53	0	genome.wustl.edu	36	17	7520037	7520037	+	Silent	SNP	C	C	T	rs55863639	unknown	TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	17	7520037	7520037	C	T	SNP	TP53	NM_000546.4	human	genbank	54_36p	-1	reviewed	silent	c.375	p.T125	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors	283	0	0.00	42	63	60.00	4	42	91.30
KIF2B	0	genome.wustl.edu	36	17	49255533	49255533	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	17	49255533	49255533	C	T	SNP	KIF2B	NM_032559.4	human	genbank	54_36p	+1	validated	missense	c.140	p.T47M	0.977	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	86	0	0.00	36	32	47.06	NA	NA	NA
PDE4A	0	genome.wustl.edu	36	19	10389494	10389494	+	Silent	SNP	G	G	T			TCGA-AB-2838-03A-01W-0726-08	TCGA-AB-2838-11A-01W-0727-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	5d0e7904-586a-4207-96aa-97c8daf3dd61	a9294e38-8585-47e2-b596-da4bb222433a	19	10389494	10389494	G	T	SNP	PDE4A	ENST00000380702	human	ensembl	54_36p	+1	known	silent	c.207	p.P69	0.941	NULL	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_HDc,superfamily_SSF109604	-	no_errors	76	0	0.00	32	16	33.33	NA	NA	NA
