Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-ND1	0	genome.wustl.edu	36	MT	3919	3919	+	Silent	SNP	G	G	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	c5cf74cb-e85e-4c8e-867f-e31d71d24045	0ca12dcf-77b9-4ee1-9509-b7619271484c	MT	3919	3919	G	A	SNP	MT-ND1	ENST00000361390	human	ensembl	54_36p	+1	known	silent	c.612	p.E204	NULL	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_2	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_errors	3558	16	0.44	1035	1880	64.27	NA	NA	NA
PHIP	0	genome.wustl.edu	36	6	79792571	79792571	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	c5cf74cb-e85e-4c8e-867f-e31d71d24045	0ca12dcf-77b9-4ee1-9509-b7619271484c	6	79792571	79792571	C	A	SNP	PHIP	NM_017934.5	human	genbank	54_36p	-1	validated	missense	c.630	p.W210C	1.000	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors	155	0	0.00	133	25	15.72	56	10	15.15
AKD1	0	genome.wustl.edu	36	6	109921318	109921318	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	c5cf74cb-e85e-4c8e-867f-e31d71d24045	0ca12dcf-77b9-4ee1-9509-b7619271484c	6	109921318	109921318	G	A	SNP	C6orf224	NM_173559.1	human	genbank	54_36p	-1	predicted	missense	c.880	p.H294Y	0.975	NULL	NULL	-	no_errors	105	1	0.93	115	76	39.58	4	2	33.33
MLLT4	0	genome.wustl.edu	36	6	168095154	168095154	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	c5cf74cb-e85e-4c8e-867f-e31d71d24045	0ca12dcf-77b9-4ee1-9509-b7619271484c	6	168095154	168095154	G	A	SNP	MLLT4	NM_001040001.1	human	genbank	54_36p	+1	validated	missense	c.4247	p.R1416H	1.000	NULL	HMMPfam_RA,HMMSmart_RA,HMMPfam_FHA,HMMSmart_FHA,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,superfamily_SMAD_FHA,HMMPfam_DIL,superfamily_SSF54236	-	no_errors	43	1	2.27	124	61	32.97	NA	NA	NA
FAM155A	0	genome.wustl.edu	36	13	106620903	106620903	+	Silent	SNP	G	G	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	c5cf74cb-e85e-4c8e-867f-e31d71d24045	0ca12dcf-77b9-4ee1-9509-b7619271484c	13	106620903	106620903	G	A	SNP	FAM155A	NM_001080396.1	human	genbank	54_36p	-1	provisional	silent	c.1320	p.A440	0.272	NULL	NULL	-	no_errors	299	1	0.33	243	107	30.57	NA	NA	NA
OR11H12	0	genome.wustl.edu	36	14	18448512	18448512	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	c5cf74cb-e85e-4c8e-867f-e31d71d24045	0ca12dcf-77b9-4ee1-9509-b7619271484c	14	18448512	18448512	C	A	SNP	OR11H12	NM_001013354.1	human	genbank	54_36p	+1	provisional	missense	c.919	p.L307I	0.968	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors	63	0	0.00	32	23	41.82	NA	NA	NA
MSRB1	0	genome.wustl.edu	36	16	1931315	1931315	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	c5cf74cb-e85e-4c8e-867f-e31d71d24045	0ca12dcf-77b9-4ee1-9509-b7619271484c	16	1931315	1931315	T	C	SNP	SEPX1	ENST00000399753	human	ensembl	54_36p	-1	known	missense	c.148	p.I50V	1.000	HMMPfam_SelR,superfamily_Mss4_like	HMMPfam_SelR,superfamily_Mss4_like	-	no_errors	48	0	0.00	24	10	29.41	52	48	48.00
CALR	0	genome.wustl.edu	36	19	12911446	12911447	+	Splice_Site	INS	-	-	T			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	c5cf74cb-e85e-4c8e-867f-e31d71d24045	0ca12dcf-77b9-4ee1-9509-b7619271484c	19	12911446	12911447	-	T	INS	CALR	NM_004343.3	human	genbank	54_36p	+1	reviewed	splice_site_ins	c.397+1_397+1	e3+1	1.000:1.000	-	-	-	no_errors	110	0	0.00	102	13	11.30	4965	31	0.62
