Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKAP4	8852	genome.wustl.edu	37	X	49957345	49957345	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	49957345	49957345	C	T	SNP	AKAP4	NM_003886.2	human	genbank	58_37c	-1	reviewed	silent	c.2019	p.A673	0.012	HMMPfam_AKAP_110,HMMSmart_SM00807	HMMPfam_AKAP_110,HMMPfam_RII_binding_1,HMMSmart_SM00807	-	no_errors
ARSE	415	genome.wustl.edu	37	X	2853148	2853148	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	2853148	2853148	G	A	SNP	ARSE	NM_000047.2	human	genbank	58_37c	-1	reviewed	missense	c.1495	p.P499S	0.820	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core	-	no_errors
BST2	684	genome.wustl.edu	37	19	17516273	17516273	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	17516273	17516273	C	G	SNP	BST2	NM_004335.2	human	genbank	58_37c	-1	reviewed	missense	c.112	p.G38R	0.000	NULL	NULL	-	no_errors
CORO6	84940	genome.wustl.edu	37	17	27948434	27948434	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	17	27948434	27948434	G	A	SNP	CORO6	NM_032854.3	human	genbank	58_37c	-1	validated	silent	c.6	p.S2	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_DUF1899,HMMPfam_DUF1900,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CREB3L3	84699	genome.wustl.edu	37	19	4171690	4171690	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	4171690	4171690	C	T	SNP	CREB3L3	ENST00000252587	human	ensembl	58_37c	+1	known	missense	c.776	p.A259V	0.427	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1	-	no_errors
CROCC	9696	genome.wustl.edu	37	1	17249200	17249200	+	Missense_Mutation	SNP	G	G	A	rs138426884	byCluster;by1000genomes	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	17249200	17249200	G	A	SNP	CROCC	NM_014675.3	human	genbank	58_37c	+1	validated	missense	c.103	p.A35T	0.001	NULL	superfamily_Prefoldin	-	no_errors
DCLK2	166614	genome.wustl.edu	37	4	151153908	151153908	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	4	151153908	151153908	C	T	SNP	DCLK2	NM_001040260.2	human	genbank	58_37c	+1	validated	silent	c.1494	p.N498	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_DCX,HMMSmart_SM00537,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Doublecortin (DC)	-	no_errors
DEFA4	1669	genome.wustl.edu	37	8	6794318	6794318	+	Missense_Mutation	SNP	C	C	T	rs149266478	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	8	6794318	6794318	C	T	SNP	DEFA4	NM_001925.1	human	genbank	58_37c	-1	reviewed	missense	c.104	p.R35H	0.000	HMMPfam_Defensin_propep	HMMPfam_Defensin_propep,HMMSmart_SM00048,HMMPfam_Defensin_1,PatternScan_DEFENSIN	-	no_errors
DLGAP2	9228	genome.wustl.edu	37	8	1497608	1497608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	8	1497608	1497608	C	T	SNP	DLGAP2	NM_004745.3	human	genbank	58_37c	+1	reviewed	missense	c.749	p.A250V	0.006	NULL	HMMPfam_GKAP	-	no_errors
DNASE2	1777	genome.wustl.edu	37	19	12991929	12991929	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	12991929	12991929	C	G	SNP	DNASE2	NM_001375.2	human	genbank	58_37c	-1	reviewed	missense	c.124	p.G42R	0.014	HMMPfam_DNase_II	PatternScan_AKH,HMMPfam_DNase_II	-	no_errors
DOC2A	8448	genome.wustl.edu	37	16	30018123	30018123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	16	30018123	30018123	C	T	SNP	DOC2A	NM_003586.2	human	genbank	58_37c	-1	reviewed	silent	c.861	p.S287	0.008	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
DPPA2	151871	genome.wustl.edu	37	3	109031471	109031471	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	109031471	109031471	G	A	SNP	DPPA2	NM_138815.3	human	genbank	58_37c	-1	validated	silent	c.102	p.D34	0.001	NULL	HMMSmart_SAP	-	no_errors
DUOX2	50506	genome.wustl.edu	37	15	45396252	45396252	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	15	45396252	45396252	C	T	SNP	DUOX2	NM_014080.4	human	genbank	58_37c	-1	reviewed	splice_site	c.2561-1	e19-1	1.000	-	-	-	no_errors
ELAVL1	1994	genome.wustl.edu	37	19	8032461	8032461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	8032461	8032461	G	A	SNP	ELAVL1	NM_001419.2	human	genbank	58_37c	-1	reviewed	missense	c.644	p.A215V	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
GPATCH3	63906	genome.wustl.edu	37	1	27219895	27219895	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	27219895	27219895	C	A	SNP	GPATCH3	NM_022078.2	human	genbank	58_37c	-1	validated	missense	c.1096	p.V366L	0.867	NULL	HMMPfam_G-patch,HMMSmart_G_patch	-	no_errors
HOXA1	3198	genome.wustl.edu	37	7	27134949	27134949	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	7	27134949	27134949	C	T	SNP	HOXA1	NM_005522.4	human	genbank	58_37c	-1	reviewed	missense	c.583	p.A195T	0.610	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
KALRN	8997	genome.wustl.edu	37	3	124380761	124380761	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	124380761	124380761	C	T	SNP	KALRN	NM_001024660.3	human	genbank	58_37c	+1	reviewed	silent	c.6328	p.L2110	1.000	superfamily_DBL homology domain (DH-domain)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_SH3_2,HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
KCTD16	57528	genome.wustl.edu	37	5	143853657	143853657	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	5	143853657	143853657	T	C	SNP	KCTD16	NM_020768.3	human	genbank	58_37c	+1	validated	silent	c.1267	p.L423	0.927	NULL	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold	-	no_errors
KIAA0802	23255	genome.wustl.edu	37	18	8796377	8796377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	18	8796377	8796377	C	T	SNP	KIAA0802	NM_015210.3	human	genbank	58_37c	+1	predicted	missense	c.2158	p.L720F	1.000	NULL	NULL	-	no_errors
KRT80	144501	genome.wustl.edu	37	12	52579389	52579389	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	12	52579389	52579389	C	T	SNP	KRT80	ENST00000466011	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-52579389	NULL	0.000	-	-	-	no_coding_region
LOC100289317	0	genome.wustl.edu	37	22	45724194	45724194	+	Silent	SNP	T	T	C	rs113755814	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	22	45724194	45724194	T	C	SNP	LOC100289317	XM_002343782.1	human	genbank	58_37c	-1	model	silent	c.48	p.P16	0.143	NULL	NULL	-	no_errors
LOC203510	0	genome.wustl.edu	37	X	111933403	111933403	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	111933403	111933403	G	T	SNP	LOC203510	XM_001723892.1	human	genbank	58_37c	+1	model	missense	c.261	p.K87N	1.000	superfamily_HMG-box	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box	-	no_errors
MEOX2	4223	genome.wustl.edu	37	7	15666489	15666489	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	7	15666489	15666489	C	T	SNP	MEOX2	NM_005924.4	human	genbank	58_37c	-1	reviewed	missense	c.572	p.R191K	1.000	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
MRPL24	79590	genome.wustl.edu	37	1	156708153	156708153	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	156708153	156708153	G	A	SNP	MRPL24	NM_024540.3	human	genbank	58_37c	-1	reviewed	silent	c.261	p.V87	0.013	HMMPfam_KOW,superfamily_Transl_SH3_like	HMMPfam_KOW,HMMSmart_KOW,PatternScan_RIBOSOMAL_L24,superfamily_Transl_SH3_like	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9061379	9061379	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	9061379	9061379	T	C	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	silent	c.26067	p.T8689	0.000	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
NLRP8	126205	genome.wustl.edu	37	19	56466066	56466066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	56466066	56466066	C	T	SNP	NLRP8	NM_176811.2	human	genbank	58_37c	+1	provisional	silent	c.642	p.I214	0.001	HMMPfam_NACHT,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
OTOF	9381	genome.wustl.edu	37	2	26706481	26706481	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	26706481	26706481	C	T	SNP	OTOF	NM_194248.2	human	genbank	58_37c	-1	reviewed	missense	c.1241	p.R414H	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
PAX8	7849	genome.wustl.edu	37	2	113993061	113993061	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	113993061	113993061	G	A	SNP	PAX8	NM_003466.3	human	genbank	58_37c	-1	reviewed	nonsense	c.997	p.Q333*	1.000	NULL	HMMPfam_PAX,HMMSmart_SM00351,PatternScan_PAIRED_1,superfamily_Homeodomain-like	-	no_errors
PCNT	5116	genome.wustl.edu	37	21	47819611	47819611	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	21	47819611	47819611	T	C	SNP	PCNT	NM_006031.5	human	genbank	58_37c	+1	reviewed	silent	c.4692	p.I1564	0.000	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PGBD5	79605	genome.wustl.edu	37	1	230468761	230468761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	230468761	230468761	C	T	SNP	PGBD5	NM_024554.3	human	genbank	58_37c	-1	reviewed	missense	c.1192	p.A398T	0.644	NULL	NULL	-	no_errors
QARS	5859	genome.wustl.edu	37	3	49135886	49135886	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	49135886	49135886	C	G	SNP	QARS	NM_005051.1	human	genbank	58_37c	-1	reviewed	missense	c.1984	p.E662Q	1.000	superfamily_Ribosomal_L25rel,HMMPfam_tRNA-synt_1c_C	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA_synt_1c_R2,HMMPfam_tRNA_synt_1c_R1,superfamily_Ribosomal_L25rel,HMMPfam_tRNA-synt_1c,HMMPfam_tRNA-synt_1c_C,superfamily_SSF52374	-	no_errors
RAD54L2	23132	genome.wustl.edu	37	3	51664777	51664777	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	3	51664777	51664777	G	A	SNP	RAD54L2	NM_015106.2	human	genbank	58_37c	+1	validated	missense	c.655	p.E219K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RBMXL3	139804	genome.wustl.edu	37	X	114426666	114426666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	114426666	114426666	G	A	SNP	RBMXL3	NM_001145346.1	human	genbank	58_37c	+1	validated	missense	c.2662	p.E888K	0.999	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
SCN7A	6332	genome.wustl.edu	37	2	167298248	167298248	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	167298248	167298248	C	A	SNP	SCN7A	NM_002976.2	human	genbank	58_37c	-1	validated	missense	c.1815	p.K605N	0.954	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SEMA4A	64218	genome.wustl.edu	37	1	156146568	156146573	+	In_Frame_Del	DEL	TCCTCT	TCCTCT	-	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	TCCTCT	TCCTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	1	156146568	156146573	TCCTCT	-	DEL	SEMA4A	NM_022367.2	human	genbank	58_37c	+1	provisional	in_frame_del	c.2066_2071	p.LF690in_frame_del	0.961:0.932:0.996:0.996:0.962:0.898	NULL	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold	-	no_errors
SLC28A3	64078	genome.wustl.edu	37	9	86894959	86894959	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	9	86894959	86894959	T	C	SNP	SLC28A3	NM_022127.1	human	genbank	58_37c	-1	provisional	missense	c.1759	p.I587V	1.000	HMMPfam_Nucleos_tra2_C	HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C	-	no_errors
TBP	6908	genome.wustl.edu	37	6	170871216	170871216	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	6	170871216	170871216	C	G	SNP	TBP	NM_003194.4	human	genbank	58_37c	+1	reviewed	missense	c.392	p.P131R	1.000	NULL	HMMPfam_TBP,PatternScan_TFIID,superfamily_TFIID_C/glycos_N	-	no_errors
TRIP12	9320	genome.wustl.edu	37	2	230678717	230678717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	2	230678717	230678717	C	T	SNP	TRIP12	NM_004238.1	human	genbank	58_37c	-1	provisional	missense	c.1711	p.E571K	1.000	superfamily_ARM-type_fold	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WWE,superfamily_ARM-type_fold	-	no_errors
TRMT1	55687	genome.wustl.edu	37	19	13218608	13218608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	19	13218608	13218608	G	A	SNP	TRMT1	NM_001136035.2	human	genbank	58_37c	-1	validated	missense	c.1463	p.T488M	0.998	HMMPfam_TRM	HMMPfam_zf-CCCH,HMMSmart_SM00356,HMMPfam_TRM,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_CCCH zinc finger	-	no_errors
TTBK1	84630	genome.wustl.edu	37	6	43214504	43214504	+	Missense_Mutation	SNP	G	G	A	rs142221642	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	6	43214504	43214504	G	A	SNP	TTBK1	NM_032538.1	human	genbank	58_37c	+1	validated	missense	c.106	p.V36M	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TTLL12	23170	genome.wustl.edu	37	22	43569738	43569738	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	22	43569738	43569738	G	A	SNP	TTLL12	NM_015140.3	human	genbank	58_37c	-1	validated	nonsense	c.1324	p.R442*	1.000	HMMPfam_TTL	HMMPfam_TTL	-	no_errors
WDR19	57728	genome.wustl.edu	37	4	39247000	39247000	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	4	39247000	39247000	G	T	SNP	WDR19	NM_025132.3	human	genbank	58_37c	+1	reviewed	missense	c.2657	p.G886V	1.000	superfamily_TPR-like	HMMPfam_Clathrin,HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase,superfamily_TPR-like	-	no_errors
YIPF6	286451	genome.wustl.edu	37	X	67718953	67718953	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FK-01A-11W-A050-09	TCGA-AN-A0FK-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a765959e-b234-427d-aade-855d6d4981d9	779c84bb-5769-4fca-ad11-fd743808c144	X	67718953	67718953	G	A	SNP	YIPF6	NM_173834.2	human	genbank	58_37c	+1	provisional	silent	c.45	p.S15	0.030	NULL	HMMPfam_Yip1	-	no_errors
