Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ANKRD16	54522	genome.wustl.edu	37	10	5930026	5930026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	10	5930026	5930026	G	A	SNP	ANKRD16	NM_001009941.2	human	genbank	58_37c	-1	validated	missense	c.319	p.P107S	1.000	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
BARX2	8538	genome.wustl.edu	37	11	129306679	129306679	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	11	129306679	129306679	C	T	SNP	BARX2	NM_003658.4	human	genbank	58_37c	+1	reviewed	missense	c.221	p.S74L	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
CEP120	153241	genome.wustl.edu	37	5	122685675	122685675	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	122685675	122685675	G	A	SNP	CEP120	NM_153223.3	human	genbank	58_37c	-1	reviewed	nonsense	c.2689	p.R897*	0.990	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
CNTNAP4	85445	genome.wustl.edu	37	16	76528874	76528874	+	Missense_Mutation	SNP	G	G	A	rs74607924	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	16	76528874	76528874	G	A	SNP	CNTNAP4	NM_033401.3	human	genbank	58_37c	+1	reviewed	missense	c.2147	p.R716H	0.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CPNE3	8895	genome.wustl.edu	37	8	87559937	87559937	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	8	87559937	87559937	A	C	SNP	CPNE3	NM_003909.3	human	genbank	58_37c	+1	reviewed	splice_site	c.820-2	e9-2	1.000	-	-	-	no_errors
CYP26B1	56603	genome.wustl.edu	37	2	72361955	72361955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	2	72361955	72361955	C	T	SNP	CYP26B1	NM_019885.2	human	genbank	58_37c	-1	reviewed	missense	c.796	p.A266T	1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DHX15	1665	genome.wustl.edu	37	4	24542562	24542562	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	4	24542562	24542562	A	T	SNP	DHX15	NM_001358.2	human	genbank	58_37c	-1	reviewed	missense	c.1495	p.Y499N	1.000	superfamily_SSF52540	HMMPfam_Helicase_C,HMMSmart_HELICc,PatternScan_DEAH_ATP_HELICASE,HMMSmart_AAA,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
ENSG00000180662	0	genome.wustl.edu	37	14	65934905	65934905	+	Missense_Mutation	SNP	A	A	C	rs56363317	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	14	65934905	65934905	A	C	SNP	ENSG00000180662	ENST00000327274	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-65934905	NULL	1.000	-	-	-	no_coding_region:pseudogene
ENSG00000205533	0	genome.wustl.edu	37	14	90740325	90740327	+	In_Frame_Del	DEL	TCT	TCT	-	rs66493135	byCluster	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	14	90740325	90740327	TCT	-	DEL	ENSG00000205533	ENST00000380590	human	ensembl	58_37c	-1	known	in_frame_del	c.355_353	p.K118in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
FASTKD3	79072	genome.wustl.edu	37	5	7867647	7867647	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	7867647	7867647	C	T	SNP	FASTKD3	NM_024091.2	human	genbank	58_37c	-1	validated	missense	c.550	p.A184T	0.993	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
FASTKD5	60493	genome.wustl.edu	37	20	3127664	3127664	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	20	3127664	3127664	A	C	SNP	FASTKD5	NM_021826.4	human	genbank	58_37c	-1	validated	missense	c.2053	p.C685G	0.000	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
FGD5	152273	genome.wustl.edu	37	3	14861440	14861440	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	3	14861440	14861440	G	A	SNP	FGD5	NM_152536.3	human	genbank	58_37c	+1	validated	missense	c.862	p.G288R	0.027	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_PH,HMMSmart_SM00233,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1,superfamily_PH domain-like	-	no_errors
GMDS	2762	genome.wustl.edu	37	6	2124961	2124961	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	6	2124961	2124961	C	G	SNP	GMDS	NM_001500.2	human	genbank	58_37c	-1	validated	missense	c.107	p.G36A	1.000	HMMPfam_Epimerase,superfamily_NAD(P)-bd	HMMPfam_Epimerase,superfamily_NAD(P)-bd	-	no_errors
GNAO1	2775	genome.wustl.edu	37	16	56388797	56388797	+	Silent	SNP	C	C	T	rs148878451	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	16	56388797	56388797	C	T	SNP	GNAO1	NM_020988.2	human	genbank	58_37c	+1	validated	silent	c.897	p.D299	0.661	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
HACE1	57531	genome.wustl.edu	37	6	105219210	105219210	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	6	105219210	105219210	T	A	SNP	HACE1	NM_020771.3	human	genbank	58_37c	-1	validated	missense	c.2069	p.N690I	1.000	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
HEATR7B2	133558	genome.wustl.edu	37	5	41052602	41052602	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	41052602	41052602	C	T	SNP	HEATR7B2	NM_173489.4	human	genbank	58_37c	-1	validated	missense	c.1195	p.V399I	0.928	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
IL17RD	54756	genome.wustl.edu	37	3	57139978	57139978	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	3	57139978	57139978	G	A	SNP	IL17RD	NM_017563.3	human	genbank	58_37c	-1	validated	silent	c.654	p.F218	0.941	NULL	HMMPfam_SEFIR	-	no_errors
INADL	10207	genome.wustl.edu	37	1	62274159	62274160	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	1	62274159	62274160	AC	-	DEL	INADL	NM_176877.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1640_1641	p.Q549fs	0.996:0.507	superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00569,HMMPfam_L27_2,superfamily_L27 domain	-	no_errors
ITFG1	81533	genome.wustl.edu	37	16	47252799	47252799	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	16	47252799	47252799	C	A	SNP	ITFG1	NM_030790.3	human	genbank	58_37c	-1	provisional	missense	c.1433	p.G478V	0.998	NULL	HMMPfam_FG-GAP,superfamily_SSF69318	-	no_errors
LARP1B	55132	genome.wustl.edu	37	4	129043387	129043387	+	Nonstop_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	4	129043387	129043387	G	C	SNP	LARP1B	ENST00000507377	human	ensembl	58_37c	+1	known	missense	c.1473	p.L491F	0.001	NULL	"HMMPfam_La,HMMSmart_SM00715,PatternScan_CYTOCHROME_B5_1,superfamily_""Winged helix"" DNA-binding domain"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LOC100288715	0	genome.wustl.edu	37	9	34552251	34552251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	9	34552251	34552251	G	A	SNP	LOC100288715	XM_002342889.1	human	genbank	58_37c	+1	model	silent	c.204	p.P68	0.999	NULL	NULL	-	no_errors
MLEC	9761	genome.wustl.edu	37	12	121132627	121132627	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	12	121132627	121132627	G	T	SNP	MLEC	NM_014730.2	human	genbank	58_37c	+1	validated	missense	c.415	p.V139L	1.000	NULL	NULL	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151945474	151945474	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	7	151945474	151945474	G	C	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	nonsense	c.2045	p.S682*	0.000	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
NCAM2	4685	genome.wustl.edu	37	21	22782691	22782691	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	21	22782691	22782691	A	-	DEL	NCAM2	NM_004540.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1293	p.I432fs	0.938	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726	HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
NEK5	341676	genome.wustl.edu	37	13	52661583	52661583	+	Missense_Mutation	SNP	C	C	A	rs140291042	byFrequency	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	13	52661583	52661583	C	A	SNP	NEK5	NM_199289.1	human	genbank	58_37c	-1	provisional	missense	c.1283	p.R428L	1.000	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NFE2L3	9603	genome.wustl.edu	37	7	26224284	26224284	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	7	26224284	26224284	T	C	SNP	NFE2L3	NM_004289.6	human	genbank	58_37c	+1	reviewed	silent	c.966	p.C322	0.004	NULL	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1	-	no_errors
ODZ2	57451	genome.wustl.edu	37	5	167545418	167545418	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	167545418	167545418	C	T	SNP	ODZ2	NM_001122679.1	human	genbank	58_37c	+1	inferred	silent	c.1935	p.C645	1.000	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_RHS_repeat,superfamily_Carboxypeptidase regulatory domain,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_EGF/Laminin	-	no_errors
OPRM1	4988	genome.wustl.edu	37	6	154412132	154412132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	6	154412132	154412132	G	T	SNP	OPRM1	NM_001145279.1	human	genbank	58_37c	+1	reviewed	missense	c.968	p.W323L	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2B3	442184	genome.wustl.edu	37	6	29055016	29055016	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	6	29055016	29055016	C	A	SNP	OR2B3	NM_001005226.2	human	genbank	58_37c	-1	validated	nonsense	c.10	p.E4*	0.329	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OTOG	340990	genome.wustl.edu	37	11	17667125	17667125	+	Missense_Mutation	SNP	C	T	T	rs191662816	by1000genomes	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	11	17667125	17667125	C	T	SNP	OTOG	XM_002343051.1	human	genbank	58_37c	+1	model	missense	c.8509	p.R2837C	0.999	NULL	HMMPfam_VWC,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,HMMSmart_SM00215,HMMPfam_AbfB,superfamily_AbfB domain (Pfam 05270),superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
PCDHGA11	56105	genome.wustl.edu	37	5	140801090	140801090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	5	140801090	140801090	C	T	SNP	PCDHGA11	NM_018914.2	human	genbank	58_37c	+1	reviewed	missense	c.296	p.T99M	0.000	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PSMD1	5707	genome.wustl.edu	37	2	231927025	231927025	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	2	231927025	231927025	G	-	DEL	PSMD1	NM_002807.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.124	p.V42fs	1.000	NULL	HMMPfam_PC_rep,superfamily_ARM repeat	-	no_errors
RAB3GAP2	25782	genome.wustl.edu	37	1	220340879	220340879	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	1	220340879	220340879	A	G	SNP	RAB3GAP2	NM_012414.3	human	genbank	58_37c	-1	reviewed	missense	c.2945	p.V982A	0.019	NULL	NULL	-	no_errors
RAD54L	8438	genome.wustl.edu	37	1	46743834	46743834	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	1	46743834	46743834	C	A	SNP	RAD54L	NM_001142548.1	human	genbank	58_37c	+1	reviewed	missense	c.2124	p.H708Q	0.996	NULL	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_HELICc,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
SLC5A7	60482	genome.wustl.edu	37	2	108604635	108604635	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	2	108604635	108604635	G	C	SNP	SLC5A7	NM_021815.2	human	genbank	58_37c	+1	provisional	silent	c.24	p.L8	1.000	NULL	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
UHRF1	29128	genome.wustl.edu	37	19	4956762	4956762	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XV-01A-11D-A10G-09	TCGA-AN-A0XV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6f0e5a39-e2c7-4a93-bd63-f1bab1e7c16e	ad602351-e61a-4469-97b0-fedfa3320fdf	19	4956762	4956762	A	G	SNP	UHRF1	ENST00000398240	human	ensembl	58_37c	+1	known	missense	c.2209	p.I737V	1.000	HMMSmart_SM00184,superfamily_RING/U-box	HMMPfam_ubiquitin,HMMSmart_SM00213,HMMSmart_SM00184,HMMSmart_SM00249,HMMPfam_YDG_SRA,HMMSmart_SM00466,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_RING_1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Ubiquitin-like,superfamily_RING/U-box	-	no_errors
