Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACACB	32	genome.wustl.edu	37	12	109678904	109678904	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	109678904	109678904	A	T	SNP	ACACB	NM_001093.3	human	genbank	58_37c	+1	reviewed	missense	c.4840	p.M1614L	1.000	HMMPfam_ACC_central	HMMPfam_Carboxyl_trans,HMMPfam_Biotin_lipoyl,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,superfamily_Rudiment single hybrid motif,HMMPfam_ACC_central,superfamily_PreATP-grasp domain,superfamily_ClpP/crotonase,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
AGGF1	55109	genome.wustl.edu	37	5	76349934	76349934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	76349934	76349934	G	A	SNP	AGGF1	NM_018046.3	human	genbank	58_37c	+1	validated	missense	c.1612	p.D538N	1.000	NULL	HMMPfam_FHA,HMMSmart_SM00240,HMMPfam_G-patch,HMMSmart_SM00443,superfamily_SMAD/FHA domain	-	no_errors
AIM1	202	genome.wustl.edu	37	6	106967048	106967048	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	6	106967048	106967048	T	A	SNP	AIM1	NM_001624.2	human	genbank	58_37c	+1	validated	silent	c.741	p.P247	0.956	NULL	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_RicinB_like,superfamily_G_crystallin_SF	-	no_errors
ANKRD17	26057	genome.wustl.edu	37	4	74019654	74019654	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	4	74019654	74019654	T	C	SNP	ANKRD17	NM_032217.3	human	genbank	58_37c	-1	reviewed	missense	c.1177	p.I393V	1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_MutS_V,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
ANKS1B	56899	genome.wustl.edu	37	12	99447042	99447042	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	99447042	99447042	C	T	SNP	ANKS1B	NM_152788.3	human	genbank	58_37c	-1	validated	missense	c.2671	p.E891K	1.000	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_PID,HMMSmart_SM00462,superfamily_SAM/Pointed domain,superfamily_PH domain-like	-	no_errors
C20orf43	51507	genome.wustl.edu	37	20	55043817	55043817	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	20	55043817	55043817	G	C	SNP	C20orf43	NM_016407.3	human	genbank	58_37c	+1	validated	missense	c.64	p.E22Q	1.000	HMMPfam_DUF602	HMMPfam_DUF602	-	no_errors
C22orf30	253143	genome.wustl.edu	37	22	32111820	32111820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	22	32111820	32111820	C	T	SNP	C22orf30	NM_173566.2	human	genbank	58_37c	-1	validated	missense	c.2005	p.D669N	0.000	NULL	NULL	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68849648	68849648	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	16	68849648	68849648	G	-	DEL	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1551	p.E518fs	0.205	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CDH19	28513	genome.wustl.edu	37	18	64211462	64211462	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	18	64211462	64211462	C	T	SNP	CDH19	NM_021153.2	human	genbank	58_37c	-1	reviewed	splice_site	c.961-1	e6-1	1.000	-	-	-	no_errors
CELA3B	23436	genome.wustl.edu	37	1	22310738	22310738	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	22310738	22310738	G	A	SNP	CELA3B	NM_007352.2	human	genbank	58_37c	+1	reviewed	missense	c.556	p.E186K	0.642	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CHI3L2	1117	genome.wustl.edu	37	1	111777558	111777558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	111777558	111777558	C	T	SNP	CHI3L2	NM_004000.2	human	genbank	58_37c	+1	validated	missense	c.359	p.S120L	0.000	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_18,PatternScan_CHITINASE_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat,superfamily_SSF54556	-	no_errors
COMMD6	170622	genome.wustl.edu	37	13	76111922	76111922	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	13	76111922	76111922	G	A	SNP	COMMD6	NM_203497.2	human	genbank	58_37c	-1	validated	missense	c.20	p.P7L	0.007	NULL	HMMPfam_HCaRG	-	no_errors
CORO1C	23603	genome.wustl.edu	37	12	109042522	109042522	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	109042522	109042522	G	C	SNP	CORO1C	NM_014325.2	human	genbank	58_37c	-1	reviewed	missense	c.1164	p.I388M	0.998	HMMPfam_DUF1900	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_DUF1899,HMMPfam_DUF1900,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CP110	9738	genome.wustl.edu	37	16	19547333	19547333	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	16	19547333	19547333	C	T	SNP	CP110	NM_014711.4	human	genbank	58_37c	+1	validated	silent	c.342	p.V114	0.998	NULL	NULL	-	no_errors
CPN1	1369	genome.wustl.edu	37	10	101808562	101808562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	10	101808562	101808562	C	T	SNP	CPN1	NM_001308.2	human	genbank	58_37c	-1	reviewed	missense	c.1183	p.D395N	0.002	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain,superfamily_Zn-dependent exopeptidases	-	no_errors
CPNE1	8904	genome.wustl.edu	37	20	34215288	34215288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	20	34215288	34215288	G	A	SNP	CPNE1	NM_003915.4	human	genbank	58_37c	-1	reviewed	missense	c.1165	p.R389C	0.968	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300	HMMPfam_C2,HMMSmart_C2,HMMSmart_VWA,superfamily_C2_CaLB,HMMPfam_Copine,superfamily_SSF53300	-	no_errors
CSE1L	1434	genome.wustl.edu	37	20	47686760	47686760	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	20	47686760	47686760	G	A	SNP	CSE1L	NM_001316.2	human	genbank	58_37c	+1	reviewed	missense	c.694	p.E232K	1.000	HMMPfam_Cse1,superfamily_ARM repeat	HMMPfam_IBN_N,HMMPfam_CAS_CSE1,HMMPfam_Cse1,superfamily_ARM repeat	-	no_errors
CYP3A7	1551	genome.wustl.edu	37	7	99308411	99308411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	99308411	99308411	G	A	SNP	CYP3A7	NM_000765.3	human	genbank	58_37c	-1	reviewed	missense	c.970	p.H324Y	0.141	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DDX50	79009	genome.wustl.edu	37	10	70666626	70666626	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	10	70666626	70666626	G	T	SNP	DDX50	NM_024045.1	human	genbank	58_37c	+1	reviewed	missense	c.247	p.D83Y	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMPfam_GUCT,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DHRS7	51635	genome.wustl.edu	37	14	60611685	60611685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	60611685	60611685	C	T	SNP	DHRS7	ENST00000360557	human	ensembl	58_37c	-1	known	missense	c.1015	p.E339K	0.911	NULL	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
DNAH12	201625	genome.wustl.edu	37	3	57443474	57443474	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	57443474	57443474	G	A	SNP	DNAH12	NM_178504.4	human	genbank	58_37c	-1	validated	missense	c.3241	p.H1081Y	0.998	HMMPfam_DHC_N2	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH2	146754	genome.wustl.edu	37	17	7627002	7627002	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	17	7627002	7627002	G	C	SNP	DNAH2	NM_020877.2	human	genbank	58_37c	+1	validated	missense	c.223	p.D75H	0.327	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNM1	1759	genome.wustl.edu	37	9	130982538	130982538	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	130982538	130982538	G	T	SNP	DNM1	NM_004408.2	human	genbank	58_37c	+1	reviewed	missense	c.767	p.R256L	1.000	HMMPfam_Dynamin_M,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_SM00053,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302,PatternScan_DYNAMIN,superfamily_PH domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ECM2	1842	genome.wustl.edu	37	9	95277306	95277306	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	95277306	95277306	C	G	SNP	ECM2	NM_001393.2	human	genbank	58_37c	-1	reviewed	missense	c.661	p.E221Q	0.031	NULL	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
EDEM3	80267	genome.wustl.edu	37	1	184695514	184695518	+	Frame_Shift_Del	DEL	TTAAA	TTAAA	-	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	TTAAA	TTAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	184695514	184695518	TTAAA	-	DEL	EDEM3	NM_025191.3	human	genbank	58_37c	-1	validated	frame_shift_del	c.622_618	p.N206fs	1.000:1.000:1.000:1.000:1.000	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	PatternScan_ER_TARGET,HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,HMMPfam_PA,superfamily_SSF52025	-	no_errors
EIF3E	3646	genome.wustl.edu	37	8	109260902	109260902	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	8	109260902	109260902	G	A	SNP	EIF3E	NM_001568.2	human	genbank	58_37c	-1	validated	silent	c.30	p.I10	1.000	HMMPfam_eIF3_N	"HMMPfam_PCI,HMMSmart_SM00088,HMMPfam_eIF3_N,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ENSG00000200579	0	genome.wustl.edu	37	3	38056061	38056061	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	38056061	38056061	C	G	SNP	ENSG00000200579	ENST00000363709	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245979	0	genome.wustl.edu	37	15	51828120	51828120	+	RNA	SNP	T	T	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	15	51828120	51828120	T	C	SNP	DMXL2	NM_015263.3	human	genbank	58_37c	-1	validated	intronic	c.2315-139	e13-139	0.000	-	-	-	no_errors
ERAP2	64167	genome.wustl.edu	37	5	96237303	96237303	+	Missense_Mutation	SNP	G	G	A	rs113436741	by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	96237303	96237303	G	A	SNP	ERAP2	NM_001130140.1	human	genbank	58_37c	+1	validated	missense	c.1666	p.G556R	0.667	NULL	"PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_Leukotriene A4 hydrolase N-terminal domain"	-	no_errors
FBN1	2200	genome.wustl.edu	37	15	48780599	48780599	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	15	48780599	48780599	G	A	SNP	FBN1	NM_000138.4	human	genbank	58_37c	-1	reviewed	silent	c.3174	p.G1058	1.000	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FOXP2	93986	genome.wustl.edu	37	7	114329880	114329880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	114329880	114329880	G	A	SNP	FOXP2	NM_148898.2	human	genbank	58_37c	+1	reviewed	missense	c.2122	p.E708K	1.000	NULL	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,PatternScan_FORK_HEAD_2,superfamily_SSF46785	-	no_errors
GABRG3	2567	genome.wustl.edu	37	15	27777879	27777879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	15	27777879	27777879	G	A	SNP	GABRG3	NM_033223.4	human	genbank	58_37c	+1	validated	missense	c.1256	p.C419Y	1.000	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GLOD4	51031	genome.wustl.edu	37	17	685930	685930	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	17	685930	685930	G	A	SNP	GLOD4	ENST00000397393	human	ensembl	58_37c	-1	known	nonsense	c.187	p.Q63*	0.996	NULL	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	-	no_errors
GPATCH4	54865	genome.wustl.edu	37	1	156565526	156565526	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	156565526	156565526	C	G	SNP	GPATCH4	NM_015590.2	human	genbank	58_37c	-1	validated	missense	c.607	p.E203Q	0.936	NULL	HMMPfam_G-patch,HMMSmart_SM00443	-	no_errors
IFNA13	3447	genome.wustl.edu	37	9	21367848	21367848	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	21367848	21367848	C	T	SNP	IFNA13	NM_006900.3	human	genbank	58_37c	-1	validated	silent	c.162	p.L54	0.000	HMMPfam_Interferon,superfamily_4-helical cytokines	HMMPfam_Interferon,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D,superfamily_4-helical cytokines	-	no_errors
IL27RA	9466	genome.wustl.edu	37	19	14143266	14143266	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	14143266	14143266	C	G	SNP	IL27RA	NM_004843.2	human	genbank	58_37c	+1	reviewed	missense	c.169	p.L57V	0.040	NULL	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	-	no_errors
KLHDC10	23008	genome.wustl.edu	37	7	129761906	129761906	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	129761906	129761906	A	T	SNP	KLHDC10	NM_014997.2	human	genbank	58_37c	+1	validated	missense	c.643	p.I215F	1.000	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2	-	no_errors
KPNA2	3838	genome.wustl.edu	37	17	66036815	66036815	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	17	66036815	66036815	G	A	SNP	KPNA2	NM_002266.2	human	genbank	58_37c	+1	reviewed	missense	c.235	p.D79N	1.000	HMMPfam_IBB,superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_IBB,superfamily_ARM repeat	-	no_errors
LOC643677	643677	genome.wustl.edu	37	13	103385449	103385449	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	13	103385449	103385449	C	T	SNP	LOC643677	XM_002344085.1	human	genbank	58_37c	-1	model	silent	c.17142	p.S5714	0.000	NULL	NULL	-	no_errors
LOC643677	643677	genome.wustl.edu	37	13	103393346	103393346	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	13	103393346	103393346	A	G	SNP	LOC643677	XM_002344085.1	human	genbank	58_37c	-1	model	missense	c.9488	p.V3163A	0.000	NULL	NULL	-	no_errors
LOC653075	653075	genome.wustl.edu	37	15	30435865	30435865	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	15	30435865	30435865	C	A	SNP	LOC653075	XR_078494.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.696	-	-	-	no_errors
LOC91149	0	genome.wustl.edu	37	2	173590423	173590423	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	2	173590423	173590423	C	G	SNP	LOC91149	NR_026995.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
LRRC3B	116135	genome.wustl.edu	37	3	26751433	26751433	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	3	26751433	26751433	G	A	SNP	LRRC3B	NM_052953.2	human	genbank	58_37c	+1	provisional	silent	c.270	p.L90	0.997	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
LRRTM2	26045	genome.wustl.edu	37	5	138210089	138210089	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	138210089	138210089	G	A	SNP	LRRTM2	NM_015564.2	human	genbank	58_37c	-1	validated	missense	c.161	p.S54L	1.000	superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	-	no_errors
LTBP2	4053	genome.wustl.edu	37	14	74995673	74995673	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	74995673	74995673	G	A	SNP	LTBP2	NM_000428.2	human	genbank	58_37c	-1	reviewed	silent	c.2140	p.L714	0.998	HMMPfam_TB,superfamily_TB module/8-cys domain	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
MACF1	23499	genome.wustl.edu	37	1	39798343	39798343	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	39798343	39798343	C	G	SNP	MACF1	NM_033044.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1403	p.S468*	0.444	NULL	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399	-	no_errors
MAST4	23227	genome.wustl.edu	37	5	66438062	66438062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	66438062	66438062	G	A	SNP	MAST4	NM_015183.2	human	genbank	58_37c	+1	validated	missense	c.2047	p.D683N	1.000	HMMSmart_S_TK_X,HMMPfam_Pkinase_C	HMMSmart_S_TK_X,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DUF1908,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
MIPOL1	145282	genome.wustl.edu	37	14	37838826	37838826	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	37838826	37838826	G	A	SNP	MIPOL1	NM_138731.5	human	genbank	58_37c	+1	validated	silent	c.933	p.L311	1.000	NULL	NULL	-	no_errors
MTMR4	9110	genome.wustl.edu	37	17	56573225	56573225	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	17	56573225	56573225	C	A	SNP	MTMR4	NM_004687.4	human	genbank	58_37c	-1	validated	missense	c.2278	p.A760S	0.002	NULL	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_Myotub-related,superfamily_FYVE/PHD zinc finger,PatternScan_TYR_PHOSPHATASE_1,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
MYH6	4624	genome.wustl.edu	37	14	23871908	23871908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	23871908	23871908	C	G	SNP	MYH6	NM_002471.3	human	genbank	58_37c	-1	validated	missense	c.1000	p.D334H	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NCRNA00174	285908	genome.wustl.edu	37	7	65842423	65842423	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	65842423	65842423	G	A	SNP	NCRNA00174	NR_026873.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.924	-	-	-	no_errors
NDFIP2	54602	genome.wustl.edu	37	13	80055541	80055541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	13	80055541	80055541	C	T	SNP	NDFIP2	NM_019080.2	human	genbank	58_37c	+1	validated	missense	c.203	p.T68M	0.045	NULL	HMMPfam_DUF2370	-	no_errors
NDRG4	65009	genome.wustl.edu	37	16	58538514	58538514	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	16	58538514	58538514	C	T	SNP	NDRG4	NM_001130487.1	human	genbank	58_37c	+1	reviewed	silent	c.489	p.I163	0.001	HMMPfam_Ndr,superfamily_SSF53474	HMMPfam_Ndr,superfamily_SSF53474	-	no_errors
NEUROD6	63974	genome.wustl.edu	37	7	31378659	31378659	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	31378659	31378659	C	G	SNP	NEUROD6	NM_022728.2	human	genbank	58_37c	-1	provisional	missense	c.224	p.R75T	1.000	NULL	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain	-	no_errors
NFASC	23114	genome.wustl.edu	37	1	204923466	204923466	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	1	204923466	204923466	C	G	SNP	NFASC	NM_015090.3	human	genbank	58_37c	+1	reviewed	missense	c.348	p.N116K	1.000	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
OBSL1	23363	genome.wustl.edu	37	2	220432006	220432006	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	2	220432006	220432006	G	-	DEL	OBSL1	NM_015311.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1826	p.S609fs	0.619	NULL	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,superfamily_SSF48726	-	no_errors
ODF2	4957	genome.wustl.edu	37	9	131256860	131256860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	131256860	131256860	G	A	SNP	ODF2	NM_002540.3	human	genbank	58_37c	+1	reviewed	silent	c.1752	p.A584	0.657	NULL	NULL	-	no_errors
PCDHB10	56126	genome.wustl.edu	37	5	140573243	140573243	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	140573243	140573243	G	T	SNP	PCDHB10	NM_018930.3	human	genbank	58_37c	+1	reviewed	missense	c.1118	p.R373I	0.150	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCLO	27445	genome.wustl.edu	37	7	82595715	82595715	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	7	82595715	82595715	G	A	SNP	PCLO	NM_033026.5	human	genbank	58_37c	-1	validated	missense	c.3389	p.S1130L	0.005	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_zf-piccolo,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
PHF3	23469	genome.wustl.edu	37	6	64422600	64422600	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	6	64422600	64422600	A	C	SNP	PHF3	NM_015153.2	human	genbank	58_37c	+1	provisional	missense	c.5116	p.K1706Q	0.994	NULL	HMMSmart_SM00249,HMMPfam_TFIIS_M,superfamily_Elongation factor TFIIS domain 2,superfamily_FYVE/PHD zinc finger,HMMPfam_SPOC,HMMSmart_SM00510,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
PI4KA	5297	genome.wustl.edu	37	22	21159370	21159370	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	22	21159370	21159370	G	C	SNP	PI4KA	NM_058004.2	human	genbank	58_37c	-1	reviewed	missense	c.1078	p.L360V	1.000	NULL	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_PI3Ka,HMMSmart_SM00145,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PSG4	5672	genome.wustl.edu	37	19	43699378	43699378	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	43699378	43699378	C	G	SNP	PSG4	NM_002780.3	human	genbank	58_37c	-1	validated	missense	c.757	p.E253Q	0.005	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
RAPGEF6	51735	genome.wustl.edu	37	5	130841179	130841179	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	130841179	130841179	C	T	SNP	RAPGEF6	NM_016340.5	human	genbank	58_37c	-1	validated	missense	c.979	p.E327K	1.000	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like	HMMPfam_RA,HMMSmart_SM00314,HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_RasGEF_N,HMMSmart_SM00229,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,superfamily_cAMP-binding domain-like	-	no_errors
RARS2	57038	genome.wustl.edu	37	6	88299660	88299660	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	6	88299660	88299660	G	A	SNP	RARS2	NM_020320.3	human	genbank	58_37c	-1	reviewed	missense	c.16	p.R6C	0.853	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain	PatternScan_AA_TRNA_LIGASE_I,superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain,HMMPfam_DALR_1,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase	-	no_errors
RHOBTB3	22836	genome.wustl.edu	37	5	95128768	95128768	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	95128768	95128768	G	C	SNP	RHOBTB3	NM_014899.3	human	genbank	58_37c	+1	validated	missense	c.1726	p.E576Q	1.000	NULL	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB,superfamily_SSF52540	-	no_errors
RNF19A	25897	genome.wustl.edu	37	8	101272152	101272152	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	8	101272152	101272152	T	C	SNP	RNF19A	NM_015435.3	human	genbank	58_37c	-1	reviewed	missense	c.1756	p.T586A	0.998	NULL	HMMSmart_SM00184,HMMPfam_IBR,HMMSmart_SM00647,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
SEL1L	6400	genome.wustl.edu	37	14	81953845	81953845	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	81953845	81953845	C	T	SNP	SEL1L	NM_005065.4	human	genbank	58_37c	-1	validated	silent	c.1521	p.L507	1.000	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like	HMMPfam_fn2,HMMSmart_SM00059,PatternScan_FN2_1,HMMPfam_Sel1,HMMSmart_SM00671,superfamily_Kringle-like,superfamily_HCP-like	-	no_errors
SFRS12IP1	285672	genome.wustl.edu	37	5	64050168	64050168	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	5	64050168	64050168	C	T	SNP	SFRS12IP1	NM_173829.3	human	genbank	58_37c	-1	validated	missense	c.35	p.R12K	1.000	NULL	HMMSmart_ZnF_C2HC	-	no_errors
SFRS15	57466	genome.wustl.edu	37	21	33067193	33067193	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	21	33067193	33067193	A	G	SNP	SFRS15	NM_020706.2	human	genbank	58_37c	-1	reviewed	missense	c.1169	p.V390A	0.997	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00582,HMMPfam_DUF618,superfamily_ENTH/VHS domain,superfamily_RNA-binding domain RBD	-	no_errors
SIPA1L1	26037	genome.wustl.edu	37	14	72139081	72139081	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	72139081	72139081	G	A	SNP	SIPA1L1	NM_015556.1	human	genbank	58_37c	+1	provisional	missense	c.2846	p.C949Y	1.000	superfamily_PDZ domain-like	HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
SNORD83B	0	genome.wustl.edu	37	22	39710680	39710680	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	22	39710680	39710680	C	G	SNP	RPL3	NM_000967.3	human	genbank	58_37c	-1	reviewed	intronic	c.849+11	e6+11	0.000	-	-	-	no_errors
SOX5	6660	genome.wustl.edu	37	12	23687346	23687346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	23687346	23687346	C	T	SNP	SOX5	NM_006940.4	human	genbank	58_37c	-1	reviewed	missense	c.2099	p.S700N	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_TONB_DEPENDENT_REC_1	-	no_errors
SPTBN1	6711	genome.wustl.edu	37	2	54874276	54874276	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	2	54874276	54874276	G	A	SNP	SPTBN1	NM_003128.2	human	genbank	58_37c	+1	reviewed	silent	c.4875	p.Q1625	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
STK38L	23012	genome.wustl.edu	37	12	27461300	27461300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	12	27461300	27461300	G	A	SNP	STK38L	NM_015000.3	human	genbank	58_37c	+1	validated	missense	c.215	p.R72H	1.000	superfamily_Kinase_like	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64580077	64580077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	14	64580077	64580077	G	A	SNP	SYNE2	NM_182914.2	human	genbank	58_37c	+1	reviewed	missense	c.12628	p.E4210K	0.000	NULL	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin	-	no_errors
TFAP2A	7020	genome.wustl.edu	37	6	10404880	10404880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	6	10404880	10404880	C	T	SNP	TFAP2A	NM_003220.2	human	genbank	58_37c	-1	reviewed	missense	c.625	p.E209K	1.000	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
THOC1	9984	genome.wustl.edu	37	18	247878	247878	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	18	247878	247878	C	T	SNP	THOC1	NM_005131.2	human	genbank	58_37c	-1	validated	missense	c.757	p.E253K	1.000	NULL	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like	-	no_errors
TLN1	7094	genome.wustl.edu	37	9	35705643	35705643	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	35705643	35705643	C	G	SNP	TLN1	NM_006289.3	human	genbank	58_37c	-1	reviewed	missense	c.5638	p.E1880Q	1.000	HMMPfam_VBS	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,HMMPfam_VBS,HMMPfam_Talin_middle,superfamily_Talin_cent,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF109885,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
TRPC4AP	26133	genome.wustl.edu	37	20	33609154	33609154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	20	33609154	33609154	T	C	SNP	TRPC4AP	NM_015638.2	human	genbank	58_37c	-1	validated	missense	c.1057	p.I353V	0.978	NULL	NULL	-	no_errors
TSC22D3	1831	genome.wustl.edu	37	X	107018376	107018376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	X	107018376	107018376	G	A	SNP	TSC22D3	NM_198057.2	human	genbank	58_37c	-1	reviewed	missense	c.274	p.R92C	1.000	NULL	HMMPfam_TSC22,PatternScan_TSC22	-	no_errors
UBQLN1	29979	genome.wustl.edu	37	9	86294885	86294885	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	9	86294885	86294885	C	T	SNP	UBQLN1	NM_013438.4	human	genbank	58_37c	-1	reviewed	silent	c.516	p.Q172	1.000	NULL	HMMPfam_UBA,HMMPfam_ubiquitin,HMMSmart_SM00213,HMMSmart_SM00727,superfamily_UBA-like,HMMSmart_SM00165,superfamily_Ubiquitin-like	-	no_errors
UBR5	51366	genome.wustl.edu	37	8	103291157	103291157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	8	103291157	103291157	C	T	SNP	UBR5	NM_015902.4	human	genbank	58_37c	-1	reviewed	missense	c.6185	p.R2062K	1.000	NULL	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_PABP,HMMSmart_PolyA,superfamily_PABP_HYD,HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1	-	no_errors
USPL1	10208	genome.wustl.edu	37	13	31233065	31233065	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	13	31233065	31233065	G	A	SNP	USPL1	NM_005800.4	human	genbank	58_37c	+1	validated	missense	c.2851	p.E951K	0.000	NULL	NULL	-	no_errors
WFDC6	140870	genome.wustl.edu	37	20	44166723	44166723	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	20	44166723	44166723	G	A	SNP	WFDC6	NM_080827.1	human	genbank	58_37c	-1	reviewed	silent	c.102	p.P34	0.376	HMMPfam_WAP,HMMSmart_WAP	HMMPfam_WAP,HMMSmart_WAP	-	no_errors
ZNF259	8882	genome.wustl.edu	37	11	116655592	116655592	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	11	116655592	116655592	G	A	SNP	ZNF259	NM_003904.3	human	genbank	58_37c	-1	provisional	nonsense	c.799	p.Q267*	0.954	HMMPfam_zf-ZPR1,HMMSmart_Zpr1	HMMPfam_zf-ZPR1,HMMSmart_Zpr1	-	no_errors
ZNF486	90649	genome.wustl.edu	37	19	20308257	20308257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	9932232f-a7b0-4962-9b14-adb8316a4661	635a03b8-f873-4ec7-bb1d-82dbcc6cb02a	19	20308257	20308257	C	T	SNP	ZNF486	NM_052852.2	human	genbank	58_37c	+1	provisional	silent	c.738	p.V246	0.048	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
