Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTA2	59	genome.wustl.edu	37	10	90701048	90701048	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	10	90701048	90701048	C	T	SNP	ACTA2	NM_001141945.1	human	genbank	58_37c	-1	reviewed	missense	c.554	p.R185Q	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
ADAMTS13	11093	genome.wustl.edu	37	9	136319570	136319570	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	9	136319570	136319570	C	T	SNP	ADAMTS13	NM_139025.3	human	genbank	58_37c	+1	reviewed	silent	c.3078	p.A1026	1.000	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"superfamily_Spermadhesin CUB domain,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Peptidase_M10,HMMSmart_SM00608,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTS18	170692	genome.wustl.edu	37	16	77334207	77334207	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	16	77334207	77334207	T	A	SNP	ADAMTS18	NM_199355.2	human	genbank	58_37c	-1	reviewed	missense	c.2627	p.Y876F	0.213	superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,HMMPfam_PLAC,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTS5	11096	genome.wustl.edu	37	21	28337771	28337771	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	21	28337771	28337771	C	G	SNP	ADAMTS5	NM_007038.3	human	genbank	58_37c	-1	reviewed	missense	c.940	p.A314P	1.000	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ANKRD11	29123	genome.wustl.edu	37	16	89349983	89349983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	16	89349983	89349983	G	A	SNP	ANKRD11	NM_013275.4	human	genbank	58_37c	-1	validated	silent	c.2967	p.S989	0.000	superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
ARHGAP36	0	genome.wustl.edu	37	X	130220600	130220600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	X	130220600	130220600	C	T	SNP	ARHGAP36	NM_144967.3	human	genbank	58_37c	+1	validated	missense	c.1447	p.R483W	0.001	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors
ATM	472	genome.wustl.edu	37	11	108235935	108235935	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	108235935	108235935	C	T	SNP	ATM	NM_000051.3	human	genbank	58_37c	+1	reviewed	nonsense	c.8977	p.R2993*	1.000	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
C3orf20	84077	genome.wustl.edu	37	3	14725873	14725873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	14725873	14725873	C	T	SNP	C3orf20	NM_032137.4	human	genbank	58_37c	+1	validated	silent	c.609	p.S203	0.000	NULL	NULL	-	no_errors
C7orf53	286006	genome.wustl.edu	37	7	112124906	112124906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	112124906	112124906	G	A	SNP	C7orf53	NM_001134468.1	human	genbank	58_37c	+1	validated	missense	c.35	p.G12D	0.000	NULL	NULL	-	no_errors
C7orf60	154743	genome.wustl.edu	37	7	112462138	112462138	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	112462138	112462138	C	T	SNP	C7orf60	NM_152556.2	human	genbank	58_37c	-1	validated	nonsense	c.879	p.W293*	1.000	NULL	NULL	-	no_errors
CHL1	10752	genome.wustl.edu	37	3	404937	404937	+	Missense_Mutation	SNP	C	C	T	rs141644867	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	404937	404937	C	T	SNP	CHL1	NM_006614.2	human	genbank	58_37c	+1	reviewed	missense	c.1456	p.R486W	0.045	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Immunoglobulin	-	no_errors
CHST9	83539	genome.wustl.edu	37	18	24496830	24496831	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	18	24496830	24496831	-	A	INS	CHST9	NM_031422.4	human	genbank	58_37c	-1	validated	frame_shift_ins	c.725_724	p.Y242fs	0.218:0.145	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
DOCK7	85440	genome.wustl.edu	37	1	62979249	62979249	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	62979249	62979249	C	A	SNP	DOCK7	NM_033407.2	human	genbank	58_37c	-1	validated	missense	c.4055	p.S1352I	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
FBXO24	26261	genome.wustl.edu	37	7	100187289	100187289	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	100187289	100187289	G	T	SNP	FBXO24	ENST00000427939	human	ensembl	58_37c	+1	known	missense	c.26	p.R9L	0.000	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_RCC1/BLIP-II,superfamily_SSF81383	-	no_errors
FBXO27	126433	genome.wustl.edu	37	19	39517580	39517580	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	19	39517580	39517580	T	C	SNP	FBXO27	NM_178820.3	human	genbank	58_37c	-1	provisional	missense	c.638	p.Q213R	0.360	HMMPfam_FBA,superfamily_Gal_bind_like	HMMPfam_F-box,HMMSmart_FBOX,HMMPfam_FBA,superfamily_Gal_bind_like,superfamily_SSF81383	-	no_errors
FSD1	79187	genome.wustl.edu	37	19	4311943	4311943	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	19	4311943	4311943	G	A	SNP	FSD1	NM_024333.2	human	genbank	58_37c	+1	reviewed	missense	c.595	p.V199M	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMSmart_BBC,HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
GABRR3	200959	genome.wustl.edu	37	3	97726675	97726675	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	97726675	97726675	C	G	SNP	GABRR3	ENST00000329044	human	ensembl	58_37c	-1	known	missense	c.3	p.M1I	1.000	HMMPfam_Neur_chan_LBD	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD	-	no_errors
GBE1	2632	genome.wustl.edu	37	3	81698093	81698093	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	3	81698093	81698093	G	C	SNP	GBE1	ENST00000264326	human	ensembl	58_37c	-1	known	missense	c.605	p.S202C	1.000	superfamily_(Trans)glycosidases	HMMPfam_CBM_48,HMMPfam_Alpha-amylase,HMMPfam_Alpha-amylase_C,HMMSmart_SM00642,superfamily_E set domains,superfamily_(Trans)glycosidases,superfamily_Glycosyl hydrolase domain	-	no_errors
GOSR1	9527	genome.wustl.edu	37	17	28817222	28817222	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	17	28817222	28817222	C	T	SNP	GOSR1	NM_004871.2	human	genbank	58_37c	+1	reviewed	nonsense	c.427	p.R143*	1.000	HMMPfam_V-SNARE	HMMPfam_V-SNARE	-	no_errors
GTF3C3	9330	genome.wustl.edu	37	2	197662581	197662581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	2	197662581	197662581	C	T	SNP	GTF3C3	NM_012086.2	human	genbank	58_37c	-1	provisional	missense	c.154	p.E52K	0.995	NULL	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_Protein prenylyltransferase,superfamily_TPR-like	-	no_errors
GTSE1	51512	genome.wustl.edu	37	22	46712078	46712078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	22	46712078	46712078	G	A	SNP	GTSE1	NM_016426.6	human	genbank	58_37c	+1	reviewed	missense	c.1201	p.D401N	0.000	NULL	NULL	-	no_errors
LOC646360	646360	genome.wustl.edu	37	10	37626604	37626605	+	RNA	INS	-	-	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	10	37626604	37626605	-	A	INS	LOC646360	XR_078419.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.998:1.000	-	-	-	no_errors
MALAT1	378938	genome.wustl.edu	37	11	65272844	65272844	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	65272844	65272844	G	C	SNP	MALAT1	NR_002819.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.011	-	-	-	no_errors
MALAT1	378938	genome.wustl.edu	37	11	65273176	65273176	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	11	65273176	65273176	G	A	SNP	MALAT1	NR_002819.2	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.274	-	-	-	no_errors
MDM4	4194	genome.wustl.edu	37	1	204513770	204513770	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	204513770	204513770	T	G	SNP	MDM4	NM_002393.3	human	genbank	58_37c	+1	validated	silent	c.780	p.T260	0.788	NULL	PatternScan_ZF_RANBP2_1,HMMPfam_SWIB,superfamily_SWIB/MDM2 domain,superfamily_RING/U-box	-	no_errors
MTF2	22823	genome.wustl.edu	37	1	93594865	93594865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	1	93594865	93594865	G	C	SNP	MTF2	NM_007358.3	human	genbank	58_37c	+1	validated	missense	c.1020	p.K340N	1.000	NULL	HMMSmart_SM00249,HMMSmart_SM00333,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
PCDHA1	56147	genome.wustl.edu	37	5	140167371	140167371	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	5	140167371	140167371	T	G	SNP	PCDHA1	NM_018900.2	human	genbank	58_37c	+1	reviewed	missense	c.1496	p.V499G	0.872	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHLPP2	23035	genome.wustl.edu	37	16	71697861	71697862	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	16	71697861	71697862	CC	-	DEL	PHLPP2	NM_015020.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.1926_1925	p.G642fs	0.959:1.000	HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00369,HMMPfam_PP2C,HMMSmart_SM00364,superfamily_PH domain-like,superfamily_L domain-like	-	no_errors
PLD3	23646	genome.wustl.edu	37	19	40882650	40882650	+	Missense_Mutation	SNP	G	G	A	rs145892029	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	19	40882650	40882650	G	A	SNP	PLD3	NM_001031696.2	human	genbank	58_37c	+1	validated	missense	c.1154	p.R385H	0.982	HMMPfam_PLD_envelope,superfamily_SSF56024	HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope,superfamily_SSF56024	-	no_errors
PPP1R9A	55607	genome.wustl.edu	37	7	94915619	94915619	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	94915619	94915619	A	C	SNP	PPP1R9A	NM_017650.2	human	genbank	58_37c	+1	validated	missense	c.2859	p.L953F	0.091	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
PRKDC	5591	genome.wustl.edu	37	8	48761994	48761994	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	8	48761994	48761994	T	G	SNP	PRKDC	ENST00000314191	human	ensembl	58_37c	-1	known	missense	c.7073	p.K2358T	1.000	superfamily_ARM repeat	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FAT,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),HMMPfam_NUC194,superfamily_ARM repeat,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
RASSF2	9770	genome.wustl.edu	37	20	4776604	4776604	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	20	4776604	4776604	G	A	SNP	RASSF2	NM_014737.2	human	genbank	58_37c	-1	reviewed	silent	c.144	p.D48	0.938	NULL	HMMPfam_RA,HMMSmart_RA	-	no_errors
SFRS5	6430	genome.wustl.edu	37	14	70235927	70235927	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	14	70235927	70235927	C	T	SNP	SFRS5	NM_001039465.1	human	genbank	58_37c	+1	validated	missense	c.325	p.R109C	1.000	HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
SNX6	58533	genome.wustl.edu	37	14	35045013	35045013	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	14	35045013	35045013	G	C	SNP	SNX6	NM_152233.2	human	genbank	58_37c	-1	reviewed	silent	c.906	p.L302	1.000	HMMPfam_Vps5	HMMPfam_PX,superfamily_PX domain,HMMPfam_Vps5	-	no_errors
SRCAP	10847	genome.wustl.edu	37	16	30718895	30718895	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	16	30718895	30718895	G	A	SNP	SRCAP	NM_006662.2	human	genbank	58_37c	+1	validated	silent	c.495	p.V165	0.980	HMMPfam_HSA,HMMSmart_SM00573	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,HMMPfam_AT_hook,HMMSmart_SM00384,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ST3GAL5	8869	genome.wustl.edu	37	2	86067596	86067596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	2	86067596	86067596	G	A	SNP	ST3GAL5	ENST00000393803	human	ensembl	58_37c	-1	known	missense	c.43	p.R15C	0.006	NULL	HMMPfam_Glyco_transf_29	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64428284	64428284	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	14	64428284	64428284	T	A	SNP	SYNE2	NM_182914.2	human	genbank	58_37c	+1	reviewed	missense	c.829	p.Y277N	0.994	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin	-	no_errors
TFAP2A	7020	genome.wustl.edu	37	6	10398921	10398921	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	6	10398921	10398921	A	C	SNP	TFAP2A	NM_003220.2	human	genbank	58_37c	-1	reviewed	missense	c.1043	p.F348C	1.000	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
TTLL4	9654	genome.wustl.edu	37	2	219617532	219617532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	2	219617532	219617532	G	A	SNP	TTLL4	NM_014640.4	human	genbank	58_37c	+1	validated	missense	c.3023	p.R1008Q	1.000	NULL	HMMPfam_TTL,superfamily_SSF56059	-	no_errors
UBE3C	9690	genome.wustl.edu	37	7	156979555	156979555	+	Missense_Mutation	SNP	A	A	G	rs62001021	byCluster;byFrequency	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	7	156979555	156979555	A	G	SNP	UBE3C	NM_014671.2	human	genbank	58_37c	+1	validated	missense	c.1171	p.I391V	0.985	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	-	no_errors
WDR69	164781	genome.wustl.edu	37	2	228769656	228769656	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	f070142b-f44e-4264-8919-dde7d02ad835	e8905dd3-81d6-424c-8329-33aba5498151	2	228769656	228769656	C	T	SNP	WDR69	NM_178821.1	human	genbank	58_37c	+1	provisional	silent	c.660	p.A220	0.886	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
