Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CCNL2	81669	genome.wustl.edu	37	1	1330849	1330849	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_030937.4	-1	validated	p.K173N	1.000	240	0%	342	16.1%	9	44.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
CALML6	163688	genome.wustl.edu	37	1	1848510	1848510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_138705.2	+1	validated	p.E166K	0.952	58	0%	77	14.3%	4	25%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473
ACTRT2	140625	genome.wustl.edu	37	1	2939361	2939361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_080431.4	+1	reviewed	p.V371M	0.979	101	0%	114	18.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
TARDBP	23435	genome.wustl.edu	37	1	11082428	11082428	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_007375.3	+1	reviewed	p.A321G	1.000	207	0%	243	13.6%	7	28.5%	probably_damaging(0.996)	tolerated(0.14)	deleterious(0.711)	NULL
EIF4G3	8672	genome.wustl.edu	37	1	21268676	21268676	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003760.3	-1	validated	p.P268R	0.948	207	0%	291	15.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KHDRBS1	10657	genome.wustl.edu	37	1	32497169	32497169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_006559.1	+1	provisional	p.I184M	1.000	286	0%	309	14.9%	8	12.5%	benign(0.202)	tolerated(0.22)	neutral(0.061)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
KPNA6	23633	genome.wustl.edu	37	1	32636421	32636421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_012316.4	+1	reviewed	p.P513T	1.000	112	0%	151	11.9%	3	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CDCA8	55143	genome.wustl.edu	37	1	38168962	38168962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_018101.2	+1	validated	p.R176Q	0.308	156	0%	169	14.2%	3	0%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMPfam_Borealin
ATPAF1-AS1	374973	genome.wustl.edu	37	1	47139068	47139068	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001145474.1	+1	predicted	p.L187	0.152	145	0%	217	15.2%	0	-	-	-	-	NULL
PCSK9	255738	genome.wustl.edu	37	1	55509543	55509543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_174936.2	+1	reviewed	p.V79M	0.094	48	0%	100	40%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	superfamily_Protease propeptides/inhibitors,HMMPfam_Inhibitor_I9
STXBP3	6814	genome.wustl.edu	37	1	109294878	109294878	+	Splice_Site	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_007269.2	+1	validated	e2-1	1.000	386	0%	380	17.9%	0	-	-	-	-	-
PROK1	84432	genome.wustl.edu	37	1	110998908	110998908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032414.2	+1	validated	p.L85M	0.999	139	0%	123	17.9%	0	-	benign(0.134)	tolerated(0.29)	neutral(0.041)	HMMPfam_Prokineticin,superfamily_SSF57190
FAM63A	55793	genome.wustl.edu	37	1	150969844	150969844	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_018379.4	-1	validated	e9-1	1.000	46	0%	80	20%	0	-	-	-	-	-
ATP1A2	477	genome.wustl.edu	37	1	160100375	160100375	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000447527	+1	known	p.A316V	0.668	104	0%	234	25.6%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
DDR2	4921	genome.wustl.edu	37	1	162749975	162749975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001014796.1	+1	reviewed	p.T836M	1.000	280	0%	675	52.4%	2	100%	probably_damaging(0.961)	tolerated(0.11)	deleterious(0.675)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
DCAF6	55827	genome.wustl.edu	37	1	168012310	168012310	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_018442.2	+1	validated	p.S535C	0.915	233	0%	439	10.9%	8	0%	probably_damaging(0.962)	deleterious(0)	deleterious(0.850)	superfamily_WD40_like
METTL11B	149281	genome.wustl.edu	37	1	170136817	170136817	+	Silent	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001136107.1	+1	validated	p.L257	1.000	73	0%	206	17%	0	-	-	-	-	HMMPfam_DUF858,superfamily_SSF53335
METTL13	51603	genome.wustl.edu	37	1	171753612	171753612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_015935.4	+1	validated	p.R296W	1.000	8	0.000	20	0.850	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181741296	181741296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000721.2	+1	reviewed	p.E1690K	0.986	148	0%	150	43.3%	0	-	benign(0.244)	tolerated(0.9)	neutral(0.025)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KDM5B	10765	genome.wustl.edu	37	1	202699097	202699097	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_006618.3	-1	validated	p.R1412T	0.998	341	0%	286	38.8%	10	90%	probably_damaging(0.978)	tolerated(0.11)	deleterious(0.692)	NULL
TMEM81	388730	genome.wustl.edu	37	1	205052752	205052752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_203376.1	-1	validated	p.A233T	0.000	282	0%	359	40.7%	4	75%	benign(0.079)	deleterious(0)	neutral(0.450)	NULL
TARBP1	6894	genome.wustl.edu	37	1	234603315	234603315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_005646.3	-1	reviewed	p.E394G	1.000	452	0%	801	45.8%	2	100%	probably_damaging(0.963)	tolerated(0.32)	neutral(0.430)	NULL
OR2T12	127064	genome.wustl.edu	37	1	248458633	248458633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001004692.1	-1	provisional	p.Y83C	0.000	309	0.3%	472	10%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
GEN1	348654	genome.wustl.edu	37	2	17959309	17959309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001130009.1	+1	validated	p.E415Q	1.000	357	0%	322	15.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TTC27	55622	genome.wustl.edu	37	2	32897423	32897423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_017735.3	+1	provisional	p.E342Q	1.000	371	0%	493	15.2%	3	0%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
POU3F3	5455	genome.wustl.edu	37	2	105473057	105473057	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_006236.1	+1	provisional	p.F363	1.000	53	0%	52	19.2%	0	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_2,superfamily_Lambda_like_DNA
BCL2L11	10018	genome.wustl.edu	37	2	111881573	111881573	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_138621.3	+1	reviewed	p.R84T	1.000	155	0%	185	16.8%	3	0%	benign(0.176)	deleterious(0)	neutral(0.461)	NULL
PAX8	7849	genome.wustl.edu	37	2	113977702	113977702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003466.3	-1	reviewed	p.E415K	1.000	59	0%	69	17.4%	99	33.3%	possibly_damaging(0.875)	deleterious(0.01)	deleterious(0.746)	NULL
CLASP1	23332	genome.wustl.edu	37	2	122205895	122205895	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000452274	-1	known	p.R347H	0.716	137	0%	165	15.8%	0	-	-	-	-	NULL
LOC653781	653781	genome.wustl.edu	37	2	131414782	131414782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	XM_929706.3	+1	model	p.D817Y	1.000	114	0%	133	15%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
YSK4	80122	genome.wustl.edu	37	2	135738488	135738488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_025052.3	-1	validated	p.A1275T	1.000	94	0%	103	55.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
COBLL1	22837	genome.wustl.edu	37	2	165548759	165548759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014900.3	-1	validated	p.S1129L	1.000	275	0%	321	45.5%	9	66.6%	possibly_damaging(0.832)	deleterious(0)	deleterious(0.762)	NULL
SCN7A	6332	genome.wustl.edu	37	2	167284451	167284451	+	Silent	SNP	A	A	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_002976.2	-1	validated	p.G900	0.015	260	0%	235	15.7%	0	-	-	-	-	NULL
GPR155	151556	genome.wustl.edu	37	2	175338026	175338026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001033045.2	-1	validated	p.S176Y	1.000	108	0%	98	48%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mem_trans
TTN	7273	genome.wustl.edu	37	2	179413968	179413968	+	Silent	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_133378.4	-1	reviewed	p.S28227*	1.000	309	0%	349	14%	1	0%	-	-	-	NULL
CWC22	57703	genome.wustl.edu	37	2	180830686	180830686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_020943.2	-1	validated	p.D412N	1.000	391	0%	495	45.1%	1	0%	benign(0.315)	tolerated(0.08)	neutral(0.398)	NULL
CLK1	1195	genome.wustl.edu	37	2	201725997	201725997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_004071.3	-1	reviewed	p.R118S	0.927	170	0%	211	12.8%	5	80%	benign(0.304)	tolerated(0.26)	neutral(0.129)	NULL
UNC80	285175	genome.wustl.edu	37	2	210696226	210696226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032504.1	+1	validated	p.V896M	1.000	212	0%	254	15.7%	0	-	benign(0.003)	tolerated(0.16)	neutral(0.059)	NULL
CRYBA2	1412	genome.wustl.edu	37	2	219856919	219856919	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_005209.1	-1	reviewed	p.L70V	1.000	40	0%	57	19.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
STK16	8576	genome.wustl.edu	37	2	220112181	220112181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001008910.2	+1	validated	p.P162L	1.000	205	0%	242	16.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Kinase_like,HMMPfam_Pkinase
RNPEPL1	57140	genome.wustl.edu	37	2	241514979	241514979	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_018226.3	+1	provisional	p.L257V	1.000	60	0%	60	13.3%	7	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	superfamily_SSF55486
HDLBP	3069	genome.wustl.edu	37	2	242174929	242174929	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000373292	-1	known	p.P804S	0.997	176	0%	213	19.2%	60	21.6%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
GRM7	2917	genome.wustl.edu	37	3	7620807	7620807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_181874.2	+1	reviewed	p.M738I	1.000	297	0%	394	25.9%	0	-	benign(0)	tolerated(0.3)	neutral(0.029)	HMMPfam_7tm_3
GORASP1	64689	genome.wustl.edu	37	3	39142358	39142358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_031899.2	-1	reviewed	p.F149Y	1.000	59	0%	83	33.7%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_PDZ domain-like,HMMPfam_GRASP55_65
GORASP1	64689	genome.wustl.edu	37	3	39142359	39142359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_031899.2	-1	reviewed	p.F149V	1.000	60	0%	82	32.9%	0	-	possibly_damaging(0.945)	deleterious(0.04)	deleterious(0.738)	superfamily_PDZ domain-like,HMMPfam_GRASP55_65
QRICH1	54870	genome.wustl.edu	37	3	49083879	49083879	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_017730.2	-1	validated	p.Y550	0.998	204	0%	261	19.5%	1	100%	-	-	-	NULL
DOCK3	1795	genome.wustl.edu	37	3	51317617	51317617	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_004947.3	+1	validated	p.Q968H	1.000	163	0%	204	13.2%	0	-	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
ENSG00000173366	0	genome.wustl.edu	37	3	52257063	52257063	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000494383	-1	known	p.G577R	0.001	25	0%	26	19.2%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
OR5AC2	81050	genome.wustl.edu	37	3	97806157	97806157	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_054106.1	+1	provisional	p.L47	0.303	557	0.2%	622	16.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
POLQ	10721	genome.wustl.edu	37	3	121217405	121217405	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_199420.3	-1	validated	p.E691A	1.000	282	0.4%	337	15.4%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
XRN1	54464	genome.wustl.edu	37	3	142151663	142151663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_019001.3	-1	validated	p.D50N	1.000	187	0%	232	12.9%	1	0%	benign(0.004)	tolerated(0.26)	neutral(0.034)	HMMPfam_XRN_N
CHST2	9435	genome.wustl.edu	37	3	142840368	142840368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_004267.3	+1	validated	p.A237V	0.990	14	0%	27	22.2%	17	5.8%	possibly_damaging(0.85)	tolerated(0.39)	neutral(0.343)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
HLTF	6596	genome.wustl.edu	37	3	148757825	148757825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003071.3	-1	reviewed	p.S832N	1.000	562	0%	1047	12.8%	5	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SUCNR1	56670	genome.wustl.edu	37	3	151599065	151599065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_033050.4	+1	reviewed	p.F245S	1.000	238	0%	619	15.3%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_7tm_1,superfamily_SSF81321
PLCH1	23007	genome.wustl.edu	37	3	155199315	155199315	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001130960.1	-1	validated	p.E1508	0.961	112	0%	318	19.8%	0	-	-	-	-	NULL
SI	6476	genome.wustl.edu	37	3	164700076	164700076	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001041.3	-1	reviewed	p.N1790	0.000	460	0%	747	17.8%	0	-	-	-	-	NULL
ZCCHC4	29063	genome.wustl.edu	37	4	25351206	25351206	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000505412	+1	known	p.T149A	1.000	296	0%	285	17.2%	0	-	-	-	-	NULL
EPHA5	2044	genome.wustl.edu	37	4	66467826	66467826	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_004439.5	-1	reviewed	p.K148T	1.000	156	0%	135	17%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,superfamily_Galactose-binding domain-like
GC	2638	genome.wustl.edu	37	4	72622488	72622488	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000583.2	-1	reviewed	p.D325E	0.000	264	0%	232	21.1%	0	-	benign(0)	tolerated(1)	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ADAMTS3	9508	genome.wustl.edu	37	4	73414570	73414570	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014243.1	-1	reviewed	p.E43	1.000	172	0%	140	21.4%	0	-	-	-	-	HMMPfam_Pep_M12B_propep
ALB	213	genome.wustl.edu	37	4	74285267	74285267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000477.5	+1	reviewed	p.E566Q	0.268	147	0%	153	22.2%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
FAT4	79633	genome.wustl.edu	37	4	126371162	126371162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_024582.4	+1	validated	p.K2997N	0.008	97	0%	87	18.4%	0	-	benign(0.116)	tolerated(0.5)	neutral(0.019)	HMMPfam_Cadherin,superfamily_Cadherin-like
LRAT	9227	genome.wustl.edu	37	4	155665715	155665715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_004744.3	+1	reviewed	p.L79F	0.995	93	0%	85	12.9%	0	-	possibly_damaging(0.749)	tolerated(0.08)	deleterious(0.575)	NULL
ODZ3	55714	genome.wustl.edu	37	4	183658093	183658093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001080477.1	+1	provisional	p.V1034F	1.000	315	0%	222	18%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ConA_like_lec_gl
PRDM9	56979	genome.wustl.edu	37	5	23526561	23526561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_020227.2	+1	provisional	p.E455G	0.054	272	0.4%	308	14.3%	0	-	benign(0.224)	deleterious(0.04)	neutral(0.371)	NULL
UGT3A2	167127	genome.wustl.edu	37	5	36037922	36037922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_174914.3	-1	validated	p.M424I	0.997	266	0%	378	16.7%	0	-	benign(0.256)	tolerated(0.06)	neutral(0.349)	HMMPfam_UDPGT,superfamily_SSF53756
LRRC70	100130733	genome.wustl.edu	37	5	61877098	61877098	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_181506.4	+1	validated	p.E611D	1.000	209	0%	131	16.8%	0	-	possibly_damaging(0.459)	tolerated(0.62)	neutral(0.154)	NULL
HOMER1	9456	genome.wustl.edu	37	5	78734879	78734879	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_004272.3	-1	validated	p.E161Q	1.000	322	0%	415	17.3%	0	-	benign(0.069)	tolerated(0.21)	neutral(0.048)	NULL
ENSG00000244801	0	genome.wustl.edu	37	5	79286107	79286107	+	RNA	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000499230	+1	novel	NULL	0.000	257	0%	239	17.2%	0	-	-	-	-	-
ZFYVE16	9765	genome.wustl.edu	37	5	79746393	79746393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001105251.1	+1	validated	p.D1124N	1.000	337	0%	284	13.4%	0	-	probably_damaging(0.99)	tolerated(0.28)	deleterious(0.473)	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80408520	80408520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_006909.1	+1	validated	p.V644M	1.000	255	0%	305	18%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
GPR98	84059	genome.wustl.edu	37	5	89923430	89923430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032119.3	+1	reviewed	p.H359Y	1.000	199	0%	225	12.4%	0	-	benign(0.198)	tolerated(0.2)	neutral(0.068)	NULL
SEC24A	10802	genome.wustl.edu	37	5	134015363	134015363	+	Silent	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_021982.1	+1	validated	p.V442	1.000	398	0%	399	29.8%	1	0%	-	-	-	HMMPfam_zf-Sec23_Sec24,superfamily_beta-sandwich domain of Sec23/24
PKD2L2	27039	genome.wustl.edu	37	5	137235387	137235387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014386.2	+1	validated	p.S236Y	1.000	170	0%	155	12.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PKD_channel
MATR3	9782	genome.wustl.edu	37	5	138658390	138658390	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_018834.4	+1	reviewed	p.E628Q	1.000	299	0%	351	14%	23	17.3%	probably_damaging(0.996)	tolerated(0.05)	deleterious(0.807)	NULL
TMEM173	340061	genome.wustl.edu	37	5	138857033	138857033	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_198282.2	-1	validated	p.Q276P	0.168	79	0%	112	17.9%	8	25%	benign(0.003)	tolerated(0.28)	neutral(0.032)	NULL
PDE6A	5145	genome.wustl.edu	37	5	149247336	149247336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000440.2	-1	reviewed	p.F742L	1.000	106	0%	99	16.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDEase_I,superfamily_SSF109604
FARS2	10667	genome.wustl.edu	37	6	5545520	5545520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_006567.3	+1	reviewed	p.R338C	1.000	201	0%	246	34.6%	4	50%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_tRNA-synt_2d,superfamily_SSF55681
MYLIP	29116	genome.wustl.edu	37	6	16142016	16142016	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_013262.3	+1	reviewed	p.E147Q	1.000	76	0%	121	24.8%	1	0%	probably_damaging(0.955)	tolerated(0.06)	deleterious(0.721)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
HIST1H3I	8354	genome.wustl.edu	37	6	27839854	27839854	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003533.2	-1	reviewed	p.K80N	1.000	123	0%	146	13%	0	-	possibly_damaging(0.928)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
MRPS18B	28973	genome.wustl.edu	37	6	30587758	30587758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014046.3	+1	reviewed	p.D116H	0.984	348	0%	465	11.6%	6	16.6%	probably_damaging(1)	tolerated(0.45)	deleterious(0.512)	HMMPfam_Ribosomal_S18,superfamily_Ribosomal protein S18
UBR2	23304	genome.wustl.edu	37	6	42583818	42583818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_015255.2	+1	reviewed	p.R391P	1.000	544	0%	483	34.8%	0	-	possibly_damaging(0.931)	tolerated(0.33)	neutral(0.402)	NULL
TAAR6	319100	genome.wustl.edu	37	6	132891957	132891957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_175067.1	+1	reviewed	p.A166V	0.345	192	0%	339	11.5%	0	-	benign(0.245)	tolerated(0.09)	neutral(0.322)	HMMPfam_7tm_1,superfamily_SSF81321
PACRG	135138	genome.wustl.edu	37	6	163510311	163510311	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_152410.2	+1	reviewed	p.R162*	1.000	226	0%	217	15.7%	1	0%	-	-	-	HMMPfam_ParcG
AMPH	273	genome.wustl.edu	37	7	38424475	38424475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001635.2	-1	reviewed	p.D678H	1.000	198	0%	187	15%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00326,superfamily_SH3-domain
POU6F2	11281	genome.wustl.edu	37	7	39446278	39446278	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_007252.3	+1	reviewed	p.G322A	1.000	107	0%	130	13.1%	0	-	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48278959	48278959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_152701.3	+1	reviewed	p.N340I	0.008	121	0%	132	16.7%	0	-	probably_damaging(0.98)	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48494654	48494654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_152701.3	+1	reviewed	p.A4196T	0.000	10	0%	14	50%	0	-	benign(0.072)	-	-	NULL
IFRD1	3475	genome.wustl.edu	37	7	112112380	112112380	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001007245.1	+1	validated	p.S383*	0.999	234	0%	391	15.1%	35	22.8%	-	-	-	NULL
EXOC4	60412	genome.wustl.edu	37	7	133689779	133689779	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_021807.3	+1	reviewed	p.I821	1.000	160	0.6%	258	11.2%	2	0%	-	-	-	NULL
KEL	3792	genome.wustl.edu	37	7	142658564	142658564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000420.2	-1	reviewed	p.V36M	0.000	61	0%	63	46%	0	-	possibly_damaging(0.525)	deleterious(0.04)	deleterious(0.526)	NULL
ZNF425	155054	genome.wustl.edu	37	7	148801976	148801976	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001001661.2	-1	validated	p.P329	0.839	31	0%	48	16.7%	0	-	-	-	-	superfamily_SSF57667
GPR124	25960	genome.wustl.edu	37	8	37687409	37687409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032777.8	+1	validated	p.R199C	1.000	23	0%	26	42.3%	0	-	probably_damaging(0.966)	tolerated(0.12)	deleterious(0.668)	HMMSmart_SM00082,superfamily_L domain-like
FGFR1	2260	genome.wustl.edu	37	8	38281810	38281810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_023107.2	-1	reviewed	p.G296R	0.000	201	0%	241	16.2%	0	-	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41798566	41798566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001099412.1	-1	validated	p.E945K	0.340	141	0%	535	34.6%	6	50%	unknown(0)	deleterious(0.02)	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41798629	41798629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001099412.1	-1	validated	p.E924K	0.287	104	1%	390	40.3%	2	100%	unknown(0)	tolerated(0.07)	-	NULL
HGSNAT	138050	genome.wustl.edu	37	8	43052825	43052825	+	Missense_Mutation	SNP	C	C	G	rs121908286		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_152419.2	+1	reviewed	p.S518C	1.000	334	0.3%	1011	72.1%	33	81.8%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_DUF2261
MTFR1	9650	genome.wustl.edu	37	8	66620266	66620266	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000424808	+1	known	p.F318Y	0.000	114	0%	198	14.1%	0	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77766535	77766535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_024721.4	+1	validated	p.G2415R	0.998	338	0.6%	427	13.6%	0	-	probably_damaging(0.991)	-	-	NULL
C8orf83	286144	genome.wustl.edu	37	8	93898956	93898956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000378861	-1	known	p.G52A	1.000	195	0%	254	23.6%	0	-	possibly_damaging(0.865)	tolerated(1)	neutral(0.335)	NULL
KCNS2	3788	genome.wustl.edu	37	8	99441108	99441108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_020697.2	+1	provisional	p.R301W	0.998	233	0%	314	19.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ZFPM2	23414	genome.wustl.edu	37	8	106815683	106815683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_012082.3	+1	reviewed	p.D1125H	1.000	82	0%	99	17.2%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PKHD1L1	93035	genome.wustl.edu	37	8	110442239	110442239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_177531.4	+1	validated	p.L1068V	0.001	377	0%	437	17.4%	0	-	benign(0)	tolerated(0.39)	neutral(0.016)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
CSMD3	114788	genome.wustl.edu	37	8	113694759	113694759	+	Silent	SNP	T	T	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_198123.1	-1	validated	p.G863	0.998	305	0%	279	11.5%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZHX2	22882	genome.wustl.edu	37	8	123964349	123964349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014943.3	+1	reviewed	p.P200R	0.996	162	0%	275	11.3%	1	0%	possibly_damaging(0.924)	tolerated(0.51)	neutral(0.382)	NULL
WISP1	8840	genome.wustl.edu	37	8	134239804	134239804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003882.2	+1	reviewed	p.D319N	0.002	222	0%	357	13.4%	2	0%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot
FAM135B	51059	genome.wustl.edu	37	8	139163525	139163525	+	Missense_Mutation	SNP	G	G	T	rs35639744		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_015912.3	-1	validated	p.P1065T	1.000	99	0%	113	15.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM135B	51059	genome.wustl.edu	37	8	139209869	139209869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_015912.3	-1	validated	p.H238R	0.993	118	0%	116	13.8%	0	-	benign(0.288)	tolerated(0.37)	neutral(0.107)	NULL
DENND3	22898	genome.wustl.edu	37	8	142148179	142148179	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014957.2	+1	validated	p.T68	0.149	182	0%	230	13%	1	100%	-	-	-	NULL
IFNA5	3442	genome.wustl.edu	37	9	21305115	21305115	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_002169.2	-1	validated	p.I47	0.000	232	0%	192	20.3%	0	-	-	-	-	HMMPfam_Interferon,superfamily_4_helix_cytokine
MAMDC2	256691	genome.wustl.edu	37	9	72741136	72741136	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_153267.4	+1	validated	p.I235	1.000	111	0%	131	15.3%	0	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
HIATL1	84641	genome.wustl.edu	37	9	97221657	97221668	+	In_Frame_Del	DEL	CATTTGAGGAGC	CATTTGAGGAGC	-	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	CATTTGAGGAGC	CATTTGAGGAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032558.2	+1	validated	p.FEEP496in_frame_del	0.976:0.836:0.845:0.818:0.822:0.969:0.991:0.992:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
HABP4	22927	genome.wustl.edu	37	9	99228000	99228000	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014282.2	+1	validated	p.R228T	0.267	361	0.3%	399	16.8%	4	0%	possibly_damaging(0.911)	deleterious(0.01)	deleterious(0.768)	HMMPfam_HABP4_PAI-RBP1
GALNT12	79695	genome.wustl.edu	37	9	101589078	101589078	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_024642.3	+1	validated	p.K196Q	1.000	111	0%	110	16.4%	1	0%	benign(0.096)	tolerated(0.29)	neutral(0.036)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
SVEP1	79987	genome.wustl.edu	37	9	113208197	113208197	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_153366.3	-1	validated	p.D1461	0.808	220	0%	282	18.1%	0	-	-	-	-	HMMPfam_Pentaxin,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases
PAPPA	5069	genome.wustl.edu	37	9	118950431	118950431	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_002581.3	+1	reviewed	p.E472*	1.000	60	1.7%	93	11.8%	0	-	-	-	-	HMMPfam_Notch,HMMSmart_NL,superfamily_SSF55486
TAF3	83860	genome.wustl.edu	37	10	8007250	8007250	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_031923.2	+1	provisional	p.K593*	0.994	75	0%	118	52.5%	7	42.8%	-	-	-	NULL
MASTL	84930	genome.wustl.edu	37	10	27459029	27459029	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032844.3	+1	reviewed	p.T381P	0.000	214	0%	323	18.3%	4	25%	benign(0.001)	tolerated(0.05)	neutral(0.345)	superfamily_Kinase_like
PTCHD3	374308	genome.wustl.edu	37	10	27702678	27702678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001034842.3	-1	validated	p.E168K	0.997	47	0%	55	16.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched
MAPK8	5599	genome.wustl.edu	37	10	49632163	49632163	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_139049.1	+1	reviewed	p.E217Q	1.000	460	0%	390	18.2%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NPFFR1	64106	genome.wustl.edu	37	10	72025993	72025993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_022146.3	-1	validated	p.S52Y	1.000	121	0%	175	30.9%	0	-	possibly_damaging(0.924)	tolerated(0.06)	deleterious(0.696)	NULL
SLC29A3	55315	genome.wustl.edu	37	10	73082532	73082532	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000373189	+1	known	p.D7	0.014	97	0%	110	20%	0	-	-	-	-	NULL
KCNMA1	3778	genome.wustl.edu	37	10	78870005	78870005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001014797.2	-1	reviewed	p.V353F	1.000	338	0%	311	17%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
WAPAL	23063	genome.wustl.edu	37	10	88260202	88260202	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_015045.2	-1	validated	p.D266	0.868	206	0%	197	15.7%	0	-	-	-	-	NULL
BMPR1A	657	genome.wustl.edu	37	10	88672074	88672074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_004329.2	+1	reviewed	p.G203A	1.000	373	0%	331	16.9%	0	-	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	NULL
TNKS2	80351	genome.wustl.edu	37	10	93572874	93572874	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_025235.3	+1	validated	p.R112*	1.000	291	0%	362	16%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
BTAF1	9044	genome.wustl.edu	37	10	93768955	93768955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003972.2	+1	validated	p.E1365K	1.000	149	0%	176	17%	0	-	benign(0.056)	tolerated(0.2)	neutral(0.053)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PSD	5662	genome.wustl.edu	37	10	104176398	104176398	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_002779.3	-1	provisional	p.S133C	0.359	25	0%	25	20%	0	-	benign(0.015)	deleterious(0)	neutral(0.445)	NULL
NRAP	4892	genome.wustl.edu	37	10	115350503	115350503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_198060.2	-1	validated	p.R1597Q	0.506	146	0.7%	168	23.2%	1	0%	possibly_damaging(0.814)	deleterious(0.02)	deleterious(0.691)	HMMPfam_Nebulin
SEC23IP	11196	genome.wustl.edu	37	10	121662334	121662334	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000442952	+1	known	p.G6S	0.000	170	0%	145	22.1%	1	100%	-	-	-	NULL
TCERG1L	256536	genome.wustl.edu	37	10	132902590	132902590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_174937.3	-1	validated	p.E475K	1.000	201	0%	226	13.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_FF,HMMSmart_FF,superfamily_FF
MUC5B	727897	genome.wustl.edu	37	11	1272920	1272920	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_002458.1	+1	validated	p.S4940C	0.005	92	0%	95	14.7%	0	-	unknown(0)	-	-	NULL
TNNT3	7140	genome.wustl.edu	37	11	1955624	1955624	+	Missense_Mutation	SNP	G	G	T	rs184687090	by1000genomes	TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_006757.3	+1	reviewed	p.K143N	1.000	146	0%	220	19.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Troponin
OR52K1	390036	genome.wustl.edu	37	11	4510319	4510319	+	Silent	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001005171.2	+1	validated	p.L63	0.554	307	0%	339	19.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52D1	390066	genome.wustl.edu	37	11	5510218	5510218	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001005163.2	+1	validated	p.E94	0.503	251	0%	259	16.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AMBRA1	55626	genome.wustl.edu	37	11	46455108	46455108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_017749.2	-1	validated	p.R874S	1.000	88	0%	101	11.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OR5W2	390148	genome.wustl.edu	37	11	55681674	55681674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001001960.1	-1	provisional	p.P129T	0.830	84	0%	116	18.1%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_7tm_1,superfamily_SSF81321
GSTP1	2950	genome.wustl.edu	37	11	67353948	67353948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000398606	+1	known	p.S178L	0.016	83	0%	119	14.3%	1937	28.7%	benign(0.004)	tolerated(0.06)	neutral(0.323)	HMMPfam_GST_C,superfamily_GST_C_like
ANKRD42	338699	genome.wustl.edu	37	11	82938827	82938827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_182603.2	+1	validated	p.D248Y	1.000	299	0%	274	40.5%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
VSTM5	387804	genome.wustl.edu	37	11	93554452	93554452	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001144871.1	-1	validated	p.I43	1.000	170	0%	184	22.3%	0	-	-	-	-	HMMSmart_IG,superfamily_SSF48726
DDI1	414301	genome.wustl.edu	37	11	103908489	103908489	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001001711.2	+1	validated	p.F313L	1.000	267	0%	298	14.8%	0	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	superfamily_Pept_Aspartic,HMMPfam_Asp_protease
IL10RA	3587	genome.wustl.edu	37	11	117870360	117870360	+	RNA	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NR_026691.1	+1	reviewed	NULL	0.000	34	0%	22	22.7%	5	0%	-	-	-	-
BCL9L	283149	genome.wustl.edu	37	11	118771612	118771612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_182557.2	-1	validated	p.S947L	0.999	147	0%	180	12.8%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
NTM	50863	genome.wustl.edu	37	11	132016246	132016246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001144058.1	+1	reviewed	p.D80H	1.000	135	0%	155	20%	0	-	possibly_damaging(0.561)	tolerated(0.46)	neutral(0.204)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
C1S	716	genome.wustl.edu	37	12	7170347	7170347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001734.3	+1	reviewed	p.F123L	0.996	207	0%	262	33.2%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB
TAS2R20	259295	genome.wustl.edu	37	12	11149555	11149555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_176889.2	-1	validated	p.S307L	0.001	159	0%	156	36.5%	0	-	benign(0.016)	tolerated(1)	neutral(0.001)	superfamily_SSF81321
ENSG00000183935	0	genome.wustl.edu	37	12	13153388	13153389	+	In_Frame_Ins	INS	-	-	GCAGCAGTCCAGCAGGGCAGCAGT	rs77117939		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000331998	+1	known	p.129in_frame_insPAGQQCSS	0.055:0.003	-	-	-	-	-	-	-	-	-	NULL
SLCO1A2	6579	genome.wustl.edu	37	12	21445246	21445246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_021094.3	-1	reviewed	p.Q488E	0.155	175	0.6%	176	24.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_OATP,superfamily_MFS general substrate transporter
RASSF8	11228	genome.wustl.edu	37	12	26220564	26220564	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_007211.4	+1	validated	p.F352	0.022	224	0%	256	19.5%	0	-	-	-	-	NULL
PDZRN4	29951	genome.wustl.edu	37	12	41900372	41900372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_013377.3	+1	validated	p.A62S	0.000	191	0%	252	15.9%	0	-	benign(0.049)	tolerated(0.5)	neutral(0.013)	superfamily_PDZ
AMHR2	269	genome.wustl.edu	37	12	53822697	53822697	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_020547.2	+1	reviewed	p.Y290*	1.000	95	0%	155	10.3%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OR6C3	254786	genome.wustl.edu	37	12	55726169	55726169	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_054104.1	+1	provisional	p.S229R	0.000	555	0%	661	15%	0	-	possibly_damaging(0.642)	tolerated(0.16)	neutral(0.284)	HMMPfam_7tm_1,superfamily_SSF81321
TSPAN19	144448	genome.wustl.edu	37	12	85421802	85421802	+	Splice_Site	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001100917.1	-1	validated	e3-1	0.997	192	0%	173	17.3%	0	-	-	-	-	-
TXNRD1	7296	genome.wustl.edu	37	12	104725378	104725378	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000429002	+1	known	p.E541Q	1.000	337	0%	328	14.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pyr_redox_dim,superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain
ZMYM2	7750	genome.wustl.edu	37	13	20660143	20660143	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003453.2	+1	validated	p.D1375H	1.000	184	0%	172	23.8%	18	38.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MYCBP2	23077	genome.wustl.edu	37	13	77671902	77671902	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_015057.4	-1	validated	p.L3091	0.985	201	1%	212	13.2%	0	-	-	-	-	NULL
NFKBIA	4792	genome.wustl.edu	37	14	35872971	35872971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_020529.2	-1	reviewed	p.K87N	0.853	125	0%	132	14.4%	26	34.6%	probably_damaging(0.978)	tolerated(0.11)	deleterious(0.692)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NIN	51199	genome.wustl.edu	37	14	51221575	51221575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_020921.3	-1	reviewed	p.E1517K	1.000	157	0%	224	29.9%	2	50%	benign(0.227)	deleterious(0.01)	neutral(0.428)	NULL
KTN1	3895	genome.wustl.edu	37	14	56106668	56106668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001079521.1	+1	validated	p.D621Y	1.000	291	0%	281	18.1%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
POMT2	29954	genome.wustl.edu	37	14	77765067	77765067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_013382.5	-1	reviewed	p.S324L	1.000	211	0%	214	14%	1	0%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
MOAP1	64112	genome.wustl.edu	37	14	93650439	93650439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_022151.4	-1	reviewed	p.R50K	0.506	113	0%	157	21%	2	0%	possibly_damaging(0.862)	tolerated(0.15)	deleterious(0.574)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105409224	105409224	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_138420.2	-1	validated	p.A4188	0.000	189	0%	205	19%	0	-	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42005577	42005577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001080541.2	+1	validated	p.H1105Y	0.085	161	0%	190	20%	0	-	benign(0.173)	deleterious(0)	neutral(0.461)	NULL
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42139907	42139907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_005090.3	+1	validated	p.S963Y	0.997	42	0%	35	17.1%	20	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_FabD/lysophospholipase-like
SNX1	6642	genome.wustl.edu	37	15	64418415	64418415	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003099.3	+1	reviewed	p.L216	0.895	143	0%	121	15.7%	6	0%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
LCTL	197021	genome.wustl.edu	37	15	66844489	66844489	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_207338.2	-1	validated	p.P406A	0.886	293	0%	363	12.1%	0	-	benign(0.069)	tolerated(0.66)	neutral(0.007)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
TLE3	7090	genome.wustl.edu	37	15	70351092	70351092	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_005078.2	-1	validated	p.A276	1.000	88	0%	112	17.9%	1	0%	-	-	-	NULL
RASGRF1	5923	genome.wustl.edu	37	15	79350689	79350689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_002891.4	-1	reviewed	p.R173Q	1.000	129	0%	158	34.8%	0	-	possibly_damaging(0.809)	tolerated(0.2)	neutral(0.353)	NULL
SH3GL3	6457	genome.wustl.edu	37	15	84228050	84228050	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003027.3	+1	validated	p.D31H	1.000	335	0%	308	29.5%	0	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	HMMPfam_BAR,HMMSmart_SM00721
TM2D3	80213	genome.wustl.edu	37	15	102182730	102182730	+	Silent	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_078474.2	-1	reviewed	p.L232	0.030	79	0%	100	10%	12	25%	-	-	-	NULL
TIGD7	91151	genome.wustl.edu	37	16	3350355	3350355	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_033208.2	-1	validated	p.W87*	1.000	253	0.4%	364	15.9%	7	14.2%	-	-	-	HMMSmart_SM00674,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind
SEC14L5	9717	genome.wustl.edu	37	16	5053459	5053459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014692.1	+1	validated	p.P396L	0.999	56	0%	58	12.1%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
NAGPA	51172	genome.wustl.edu	37	16	5077175	5077175	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_016256.2	-1	reviewed	p.E434A	0.000	94	0%	109	16.5%	11	54.5%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
GPR97	222487	genome.wustl.edu	37	16	57713216	57713216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_170776.4	+1	validated	p.P207L	0.002	73	0%	71	40.8%	0	-	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
HYDIN	54768	genome.wustl.edu	37	16	70917950	70917950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032821.2	-1	validated	p.N3283K	0.884	105	0%	154	14.3%	0	-	benign(0.034)	tolerated(0.14)	neutral(0.252)	NULL
HYDIN	54768	genome.wustl.edu	37	16	71171228	71171228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032821.2	-1	validated	p.G290V	1.000	321	0%	526	8.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DHX38	9785	genome.wustl.edu	37	16	72137620	72137620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_014003.3	+1	reviewed	p.R586Q	1.000	63	1.6%	104	15.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_DEXDc,superfamily_SSF52540
USP10	9100	genome.wustl.edu	37	16	84796613	84796613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_005153.2	+1	reviewed	p.E525K	1.000	231	0%	225	18.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_SSF54001
SMG6	23293	genome.wustl.edu	37	17	2196243	2196243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_017575.4	-1	validated	p.R727L	1.000	234	0.4%	210	12.9%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_EST1
TP53	7157	genome.wustl.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	T	rs121913343	byCluster	TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000546.4	-1	reviewed	p.R273S	0.830	182	0%	288	58.7%	14	64.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_p53-like transcription factors,HMMPfam_P53
MYH13	8735	genome.wustl.edu	37	17	10223673	10223673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003802.2	-1	validated	p.L1084F	0.936	416	0%	406	16.5%	0	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
ELAC2	60528	genome.wustl.edu	37	17	12896269	12896269	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_018127.6	-1	reviewed	p.E783Q	1.000	63	0%	107	44.9%	29	58.6%	probably_damaging(0.999)	tolerated(0.51)	deleterious(0.499)	NULL
FBXW10	10517	genome.wustl.edu	37	17	18651298	18651298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_031456.3	+1	validated	p.D184N	0.318	509	0%	623	16.2%	0	-	benign(0.071)	tolerated(0.07)	neutral(0.324)	superfamily_WD40 repeat-like
SLFN12L	100506736	genome.wustl.edu	37	17	33802367	33802367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001145027.1	-1	validated	p.S477T	0.173	301	0%	289	14.2%	0	-	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
KRT27	342574	genome.wustl.edu	37	17	38938619	38938619	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_181537.3	-1	reviewed	p.S43C	0.216	156	0%	195	16.9%	0	-	benign(0.004)	tolerated(0.15)	neutral(0.241)	NULL
HDAC5	10014	genome.wustl.edu	37	17	42158130	42158130	+	Splice_Site	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001015053.1	-1	reviewed	e20+1	1.000	112	0%	169	17.2%	2	100%	-	-	-	-
MRPS23	51649	genome.wustl.edu	37	17	55918378	55918378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_016070.2	-1	reviewed	p.G110V	1.000	802	0%	953	12%	7	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_MRP-S23
LPO	4025	genome.wustl.edu	37	17	56327830	56327830	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_006151.2	+1	reviewed	p.D210H	1.000	150	0%	241	13.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
YPEL2	388403	genome.wustl.edu	37	17	57430867	57430867	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001005404.3	+1	validated	p.H33D	1.000	152	0%	256	16.4%	0	-	benign(0.084)	tolerated(0.1)	neutral(0.292)	HMMPfam_Yippee
RNFT1	51136	genome.wustl.edu	37	17	58037439	58037439	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_016125.3	-1	validated	p.L228I	1.000	175	0%	259	13.5%	2	0%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
ENSG00000238283	0	genome.wustl.edu	37	17	58088518	58088518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000407042	-1	known	p.S264L	0.003	383	0%	521	10.9%	1	0%	-	-	-	HMMPfam_TBC
FTSJ3	117246	genome.wustl.edu	37	17	61898778	61898778	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_017647.3	-1	reviewed	p.E608Q	0.000	102	0%	205	14.6%	2	0%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
SLC39A11	201266	genome.wustl.edu	37	17	70732822	70732822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_139177.3	-1	validated	p.E213G	0.150	237	0%	271	14.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Zip
ASXL3	80816	genome.wustl.edu	37	18	31323172	31323172	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_030632.1	+1	provisional	p.L1120	1.000	68	0%	99	14.1%	0	-	-	-	-	NULL
MOCOS	55034	genome.wustl.edu	37	18	33795641	33795641	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_017947.2	+1	validated	p.Q500E	0.010	80	0%	96	14.6%	5	20%	benign(0.004)	tolerated(0.66)	neutral(0.003)	NULL
CDH20	28316	genome.wustl.edu	37	18	59166671	59166671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_031891.2	+1	reviewed	p.D167N	1.000	123	0%	142	16.2%	0	-	probably_damaging(0.998)	tolerated(0.48)	deleterious(0.485)	superfamily_Cadherin
PIGN	23556	genome.wustl.edu	37	18	59777173	59777173	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_012327.5	-1	reviewed	p.A490P	0.033	195	0%	176	23.3%	0	-	benign(0.355)	tolerated(0.11)	neutral(0.384)	HMMPfam_PigN
HCN2	610	genome.wustl.edu	37	19	613383	613383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001194.3	+1	validated	p.E574K	0.999	81	0%	80	32.5%	2	0%	possibly_damaging(0.817)	tolerated(0.12)	deleterious(0.570)	HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_CNMP_BINDING_1,superfamily_cNMP_binding
MUC16	94025	genome.wustl.edu	37	19	9090333	9090333	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_024690.2	-1	validated	p.S494R	0.000	208	0%	498	59.2%	0	-	unknown(0)	-	-	NULL
ELOF1	84337	genome.wustl.edu	37	19	11664850	11664850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_032377.3	-1	validated	p.E55K	1.000	116	0%	290	11%	64	15.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Elf1
ARMC6	93436	genome.wustl.edu	37	19	19162614	19162614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_033415.2	+1	reviewed	p.L130M	0.033	32	0%	74	12.2%	13	7.6%	possibly_damaging(0.726)	tolerated(0.08)	deleterious(0.564)	superfamily_ARM repeat
PEPD	5184	genome.wustl.edu	37	19	33953921	33953921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000285.3	-1	reviewed	p.M217I	1.000	709	0.1%	757	14.5%	4	0%	benign(0.103)	deleterious(0.04)	neutral(0.357)	HMMPfam_Peptidase_M24,superfamily_Peptidase_M24_cat_core
RPS4XP21	126235	genome.wustl.edu	37	19	34584109	34584109	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000469064	-1	known	p.Q47P	1.000	21	0%	25	24%	0	-	benign(0.418)	deleterious(0)	deleterious(0.580)	HMMPfam_RS4NT
ZNF570	148268	genome.wustl.edu	37	19	37975114	37975114	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_144694.1	+1	provisional	p.R197T	0.477	110	0%	96	21.9%	0	-	benign(0.003)	deleterious(0.04)	neutral(0.349)	superfamily_C2H2 and C2HC zinc fingers
WDR87	83889	genome.wustl.edu	37	19	38382414	38382414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_031951.3	-1	provisional	p.R1019W	0.803	147	0.7%	149	16.8%	0	-	probably_damaging(1)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
CYP2A6	1548	genome.wustl.edu	37	19	41351950	41351950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000762.5	-1	reviewed	p.T295M	0.008	191	0%	267	18%	0	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	HMMPfam_p450,superfamily_Cytochrome P450
SIGLEC11	114132	genome.wustl.edu	37	19	50463398	50463398	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000426971	-1	known	p.W237L	0.783	255	0%	326	9.2%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
ZNF835	90485	genome.wustl.edu	37	19	57175917	57175917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001005850.1	-1	provisional	p.T239M	1.000	29	0%	69	43.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
ZNF749	388567	genome.wustl.edu	37	19	57955099	57955099	+	Missense_Mutation	SNP	G	G	C	rs76462332		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001023561.2	+1	provisional	p.D195H	0.000	101	0%	166	45.2%	0	-	benign(0.015)	tolerated(0.5)	neutral(0.011)	NULL
ZNF337	26152	genome.wustl.edu	37	20	25655682	25655682	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_015655.2	-1	validated	p.E748Q	0.716	199	0%	321	46.1%	21	71.4%	benign(0.007)	deleterious(0.03)	neutral(0.364)	NULL
CASS4	57091	genome.wustl.edu	37	20	55012583	55012583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_020356.3	+1	validated	p.P134S	0.869	16	0%	24	58.3%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
CTCFL	140690	genome.wustl.edu	37	20	56083807	56083807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_080618.2	-1	reviewed	p.G510A	1.000	278	0%	420	58.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
MORC3	23515	genome.wustl.edu	37	21	37711216	37711216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_015358.2	+1	reviewed	p.R202K	1.000	92	0%	111	20.7%	0	-	possibly_damaging(0.88)	tolerated(0.18)	neutral(0.399)	superfamily_ATP_bd_ATPase
MX1	4599	genome.wustl.edu	37	21	42830607	42830607	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001144925.1	+1	reviewed	p.S637R	0.973	54	0%	45	31.1%	20	30%	benign(0.004)	tolerated(0.32)	neutral(0.024)	HMMPfam_GED,HMMSmart_GED
MCM3AP	8888	genome.wustl.edu	37	21	47704178	47704178	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_003906.3	-1	reviewed	p.T341	0.007	157	0%	162	18.5%	1	0%	-	-	-	NULL
SEPT5	5413	genome.wustl.edu	37	22	19709968	19709968	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_002688.4	+1	reviewed	p.E357D	1.000	20	0%	27	29.6%	4	0%	benign(0.388)	tolerated(0.48)	neutral(0.135)	NULL
HMOX1	3162	genome.wustl.edu	37	22	35782716	35782716	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_002133.1	+1	reviewed	p.L61	1.000	56	0%	108	21.3%	23	17.3%	-	-	-	HMMPfam_Heme_oxygenase,superfamily_Heme oxygenase-like
CELSR1	9620	genome.wustl.edu	37	22	46859794	46859794	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	ENST00000454637	-1	known	p.S706L	1.000	81	0%	115	15.7%	0	-	-	-	-	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
P2RY8	286530	genome.wustl.edu	37	X	1584609	1584609	+	Silent	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_178129.4	-1	reviewed	p.L281	1.000	69	0%	83	22.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ASMT	438	genome.wustl.edu	37	X	1742065	1742065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_004043.2	+1	reviewed	p.D35H	1.000	261	0%	265	19.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF46785
MAGEB6	158809	genome.wustl.edu	37	X	26213093	26213093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_173523.2	+1	reviewed	p.A377D	0.012	242	0%	287	20.2%	0	-	possibly_damaging(0.501)	deleterious(0)	deleterious(0.612)	NULL
USP27X	389856	genome.wustl.edu	37	X	49645901	49645901	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001145073.1	+1	provisional	p.L331V	1.000	218	0%	288	34.4%	1	100%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
ZXDB	158586	genome.wustl.edu	37	X	57620425	57620425	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_007157.3	+1	validated	p.L648	0.969	185	0%	176	14.2%	0	-	-	-	-	NULL
CYLC1	1538	genome.wustl.edu	37	X	83128279	83128279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_021118.1	+1	provisional	p.S188F	0.000	57	0%	49	22.4%	0	-	unknown(0)	tolerated(0.33)	-	NULL
SERPINA7	6906	genome.wustl.edu	37	X	105280474	105280474	+	Silent	SNP	G	G	C	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_000354.5	-1	reviewed	p.L192	0.437	206	0%	138	21.7%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
KLHL13	90293	genome.wustl.edu	37	X	117053679	117053679	+	Silent	SNP	A	A	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_033495.3	-1	reviewed	p.G125	1.000	156	0%	107	23.4%	0	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
LOC100128949	100128949	genome.wustl.edu	37	X	134155747	134155747	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	XM_001720075.2	+1	model	p.V12	0.000	147	0.7%	114	15.8%	1	100%	possibly_damaging(0.86)	-	-	NULL
FAM127A	8933	genome.wustl.edu	37	X	134166525	134166525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001078171.1	+1	validated	p.D38Y	1.000	110	0%	100	32%	12	75%	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	NULL
SPANXN2	494119	genome.wustl.edu	37	X	142795245	142795245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LF-01A-11D-A122-09	TCGA-AP-A0LF-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	460f7427-ebcf-404b-9e9e-e0278d0bca95	1d931d9e-37a8-401f-89cf-e621ce8d56a8	NM_001009615.1	-1	provisional	p.E145K	0.000	562	0%	441	21.1%	0	-	unknown(0)	tolerated(0.2)	-	NULL
