Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
UBR4	23352	genome.wustl.edu	37	1	19482148	19482148	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_020765.2	-1	validated	p.C2029	0.073	115	0%	106	63.2%	0	-	-	-	-	superfamily_ARM repeat
HSPG2	3339	genome.wustl.edu	37	1	22174370	22174370	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	ENST00000453796	-1	known	p.H28D	0.430	66	0%	17	41.2%	0	-	benign(0.014)	tolerated(0.42)	neutral(0.015)	NULL
RPTN	126638	genome.wustl.edu	37	1	152127255	152127255	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001122965.1	-1	validated	p.Q774*	0.007	993	0%	587	30.2%	0	-	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155491095	155491095	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_018489.2	-1	reviewed	p.Q72	1.000	314	0%	245	33.1%	0	-	-	-	-	NULL
SOS1	6654	genome.wustl.edu	37	2	39281778	39281778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_005633.3	-1	reviewed	p.N233Y	1.000	74	0%	124	31.5%	2	50%	possibly_damaging(0.647)	tolerated(0.27)	neutral(0.261)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
FOXD4L1	200350	genome.wustl.edu	37	2	114257810	114257810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_012184.4	+1	reviewed	p.I326T	1.000	38	0%	15	46.7%	0	-	benign(0.204)	deleterious(0)	neutral(0.464)	NULL
LRP1B	53353	genome.wustl.edu	37	2	141143522	141143522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_018557.2	-1	validated	p.D3491N	1.000	280	0%	283	27.6%	0	-	probably_damaging(1)	tolerated(0.49)	deleterious(0.510)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
LRP2	4036	genome.wustl.edu	37	2	170062145	170062145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_004525.2	-1	reviewed	p.Y2520C	1.000	62	0%	48	33.3%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
TTN	7273	genome.wustl.edu	37	2	179469886	179469886	+	Silent	SNP	T	T	C	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	ENST00000356127	-1	known	p.V15438	0.985	151	0%	142	34.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
WDFY1	57590	genome.wustl.edu	37	2	224763755	224763755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_020830.3	-1	reviewed	p.G173D	1.000	193	0%	115	26.1%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ARL4C	10123	genome.wustl.edu	37	2	235404686	235404686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_005737.3	-1	reviewed	p.R182H	1.000	50	0%	17	23.5%	3	66.6%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases
CAMP	820	genome.wustl.edu	37	3	48265949	48265949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_004345.3	+1	validated	p.G103R	0.985	104	0%	35	37.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF54403
PIK3CA	5290	genome.wustl.edu	37	3	178916938	178916940	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_006218.2	+1	reviewed	p.E110in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF54236
PCDHAC2	56134	genome.wustl.edu	37	5	140347689	140347689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_018899.5	+1	reviewed	p.I446M	0.000	61	0%	20	40%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB13	56123	genome.wustl.edu	37	5	140594040	140594040	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_018933.2	+1	reviewed	p.F115	0.000	141	0%	105	11.4%	0	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
PCDHGA1	56114	genome.wustl.edu	37	5	140711672	140711672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_018912.2	+1	reviewed	p.V474A	0.005	150	0%	137	29.2%	0	-	benign(0.168)	deleterious(0.01)	neutral(0.421)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
C5orf4	10826	genome.wustl.edu	37	5	154210416	154210416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_032385.3	-1	validated	p.T104K	0.997	148	0%	107	29%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TINAG	27283	genome.wustl.edu	37	6	54214660	54214660	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_014464.3	+1	validated	p.Y349S	1.000	124	0%	115	27.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Peptidase_C1,HMMSmart_SM00645,superfamily_Cysteine proteinases
POU3F2	5454	genome.wustl.edu	37	6	99283812	99283812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_005604.2	+1	validated	p.R355W	1.000	83	0%	34	29.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SLC22A2	6582	genome.wustl.edu	37	6	160662520	160662520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_003058.2	-1	reviewed	p.P496L	1.000	96	0%	61	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_MFS general substrate transporter
MGAM	8972	genome.wustl.edu	37	7	141778630	141778630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	ENST00000475668	+1	known	p.P1891H	0.991	108	0%	74	56.8%	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00018,superfamily_Trefoil
GAPVD1	26130	genome.wustl.edu	37	9	128113134	128113134	+	Silent	SNP	G	G	T	rs181809764	by1000genomes	TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_015635.2	+1	validated	p.S1211	0.554	174	0%	144	12.5%	0	-	-	-	-	NULL
ARMC4	55130	genome.wustl.edu	37	10	28272825	28272825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_018076.2	-1	validated	p.D256N	0.981	75	0%	73	19.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
PARD3	56288	genome.wustl.edu	37	10	34805912	34805912	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_019619.3	-1	validated	p.R133P	1.000	192	0%	157	26.8%	4	50%	probably_damaging(0.955)	tolerated(0.08)	deleterious(0.699)	NULL
PTEN	5728	genome.wustl.edu	37	10	89653836	89653837	+	Frame_Shift_Ins	INS	-	-	ATAC	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	ENST00000371953	+1	known	p.R47fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89692922	89692922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	ENST00000371953	+1	known	p.C136R	1.000	189	0%	280	22.1%	26	50%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
BTAF1	9044	genome.wustl.edu	37	10	93778569	93778569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_003972.2	+1	validated	p.N1580K	1.000	162	1.2%	151	21.9%	0	-	possibly_damaging(0.95)	deleterious(0.04)	deleterious(0.742)	HMMPfam_SNF2_N
EXOC6	54536	genome.wustl.edu	37	10	94757350	94757350	+	Silent	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_019053.4	+1	reviewed	p.N691	1.000	265	0%	319	26.3%	1	100%	-	-	-	HMMPfam_Sec15
ALDH18A1	5832	genome.wustl.edu	37	10	97388190	97388190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_002860.3	-1	reviewed	p.G290R	1.000	108	0%	153	12.4%	1	0%	possibly_damaging(0.893)	tolerated(0.34)	neutral(0.375)	HMMPfam_AA_kinase,superfamily_Carbamate kinase-like
C11orf42	160298	genome.wustl.edu	37	11	6231683	6231683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_173525.2	+1	validated	p.V226I	1.000	56	0%	29	48.3%	0	-	benign(0.056)	tolerated(0.14)	neutral(0.253)	NULL
COPB1	1315	genome.wustl.edu	37	11	14487925	14487925	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001144061.1	-1	reviewed	p.Y731	1.000	260	0%	194	32%	2	0%	-	-	-	HMMPfam_Coatamer_beta_C
ESAM	90952	genome.wustl.edu	37	11	124623724	124623724	+	Silent	SNP	A	A	G	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_138961.2	-1	validated	p.L331	0.000	160	0%	44	36.4%	0	-	-	-	-	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72288565	72288565	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_022771.4	+1	reviewed	p.Q270*	1.000	146	0%	105	35.2%	3	0%	-	-	-	NULL
NOS1	4842	genome.wustl.edu	37	12	117710315	117710315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_000620.2	-1	reviewed	p.V572M	1.000	70	0%	25	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
MLXIP	22877	genome.wustl.edu	37	12	122618238	122618238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	ENST00000319080	+1	known	p.K479R	0.263	137	0%	39	28.2%	0	-	possibly_damaging(0.793)	tolerated(0.19)	neutral(0.347)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105407004	105407004	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_138420.2	-1	validated	p.S4928	0.000	99	0%	47	38.3%	1	0%	-	-	-	NULL
TMC3	342125	genome.wustl.edu	37	15	81625494	81625494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001080532.1	-1	provisional	p.R857*	0.972	119	0%	76	34.2%	0	-	-	-	-	NULL
TNK1	8711	genome.wustl.edu	37	17	7286288	7286288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_003985.3	+1	validated	p.R15W	1.000	72	0%	39	25.6%	0	-	benign(0.167)	tolerated(0.08)	neutral(0.315)	NULL
CHD3	1107	genome.wustl.edu	37	17	7813839	7813839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001005271.2	+1	reviewed	p.R1954H	1.000	94	0%	24	16.7%	7	42.8%	probably_damaging(1)	-	-	HMMPfam_CHDCT2
FBXW10	10517	genome.wustl.edu	37	17	18681918	18681918	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_031456.3	+1	validated	p.L821	0.989	41	0%	57	28.1%	0	-	-	-	-	NULL
KRT13	3860	genome.wustl.edu	37	17	39659672	39659672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_153490.2	-1	reviewed	p.R201H	1.000	215	0%	104	26.9%	6	66.6%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	superfamily_Prefoldin,HMMPfam_Filament
MYCBPAP	84073	genome.wustl.edu	37	17	48600414	48600414	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_032133.4	+1	validated	p.R501W	0.930	123	0.8%	73	11%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
B3GNTL1	146712	genome.wustl.edu	37	17	80992968	80992968	+	Silent	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001009905.1	-1	validated	p.Y95	1.000	117	0.9%	120	31.7%	0	-	-	-	-	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
DCC	1630	genome.wustl.edu	37	18	49867227	49867227	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_005215.3	+1	reviewed	p.S24C	1.000	327	0%	211	34.6%	0	-	benign(0.23)	deleterious(0.04)	neutral(0.372)	NULL
MBP	4155	genome.wustl.edu	37	18	74729151	74729151	+	Silent	SNP	C	C	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001025101.1	-1	reviewed	p.A71	0.994	163	0%	48	22.9%	3	0%	-	-	-	NULL
HIF3A	64344	genome.wustl.edu	37	19	46834437	46834437	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	ENST00000457771	+1	known	p.R433*	0.638	135	0%	63	27%	0	-	-	-	-	NULL
ZNF701	55762	genome.wustl.edu	37	19	53086548	53086548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_018260.2	+1	validated	p.C412W	0.826	252	0%	158	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes
TMC4	147798	genome.wustl.edu	37	19	54668298	54668298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001145303.1	-1	validated	p.A334V	0.069	31	0%	12	33.3%	2	50%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
SSTR4	6754	genome.wustl.edu	37	20	23016655	23016655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001052.2	+1	validated	p.L179F	0.863	60	0%	22	36.4%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_SSF81321
EP300	2033	genome.wustl.edu	37	22	41562637	41562637	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001429.3	+1	reviewed	p.R1281*	1.000	176	0%	241	31.1%	0	-	-	-	-	HMMPfam_DUF906
SMC1B	27127	genome.wustl.edu	37	22	45809375	45809375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_148674.3	-1	validated	p.R25Q	0.950	37	0%	11	36.4%	0	-	benign(0.028)	tolerated(0.19)	neutral(0.051)	HMMPfam_SMC_N,superfamily_SSF52540
BMX	660	genome.wustl.edu	37	X	15560257	15560257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001721.6	+1	reviewed	p.M516T	1.000	193	0%	146	30.8%	0	-	probably_damaging(0.973)	tolerated(0.07)	deleterious(0.734)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ZRSR2	8233	genome.wustl.edu	37	X	15838437	15838439	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	GTG	GTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_005089.3	+1	reviewed	p.G313in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
GPRASP1	9737	genome.wustl.edu	37	X	101910265	101910265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001099410.1	+1	reviewed	p.T475I	0.367	110	0%	62	27.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FAM122C	159091	genome.wustl.edu	37	X	133948871	133948871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_138819.3	+1	validated	p.R61C	0.002	142	0%	104	18.3%	0	-	possibly_damaging(0.875)	deleterious(0)	deleterious(0.784)	NULL
BRS3	680	genome.wustl.edu	37	X	135570682	135570682	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_001727.1	+1	validated	p.T137fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
GABRA3	2556	genome.wustl.edu	37	X	151514086	151514086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AP-A0LQ-01A-12D-A10B-09	TCGA-AP-A0LQ-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	94e0a8d1-ee84-436f-a51d-d6b0368613b7	f68f7d0c-ff51-4987-8da9-468f4709f279	NM_000808.3	-1	reviewed	p.G77S	1.000	168	0%	93	34.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
