Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BAG4	9530	genome.wustl.edu	37	8	38067960	38067963	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	TGTT	TGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	8	38067960	38067963	TGTT	-	DEL	BAG4	NM_004874.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1323_1326	p.C443fs	0.999:1.000:1.000:0.990	HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491	HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491	-	no_errors
C1QTNF4	114900	genome.wustl.edu	37	11	47611487	47611487	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	47611487	47611487	G	A	SNP	C1QTNF4	NM_031909.2	human	genbank	58_37c	-1	validated	silent	c.876	p.D292	0.962	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like	-	no_errors
CCDC66	285331	genome.wustl.edu	37	3	56655847	56655849	+	RNA	DEL	AAA	AAA	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	3	56655847	56655849	AAA	-	DEL	CCDC66	NR_024460.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.000:0.000:0.007	-	-	-	no_errors
CELSR1	9620	genome.wustl.edu	37	22	46795613	46795613	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	22	46795613	46795613	C	A	SNP	CELSR1	NM_014246.1	human	genbank	58_37c	-1	reviewed	splice_site	c.5412+1	e10+1	1.000	-	-	-	no_errors
CEP164	22897	genome.wustl.edu	37	11	117252486	117252487	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	117252486	117252487	-	C	INS	CEP164	NM_014956.4	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1479_1480	p.P494fs	0.299:0.293	NULL	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain	-	no_errors
E2F4	1874	genome.wustl.edu	37	16	67229793	67229794	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	16	67229793	67229794	-	CAG	INS	E2F4	NM_001950.3	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.917_918	p.310in_frame_insS	1.000:0.995	NULL	HMMPfam_E2F_TDP,superfamily_SSF46785	-	no_errors
EFHB	151651	genome.wustl.edu	37	3	19975051	19975051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	3	19975051	19975051	C	T	SNP	EFHB	NM_144715.3	human	genbank	58_37c	-1	validated	missense	c.460	p.V154I	0.000	NULL	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
ENSG00000215147	0	genome.wustl.edu	37	5	37213798	37213798	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	37213798	37213798	C	G	SNP	C5orf42	ENST00000508244	human	ensembl	58_37c	-1	known	missense	c.2783	p.G928A	0.000	NULL	NULL	-	no_errors
ENSG00000246385	0	genome.wustl.edu	37	19	12814690	12814691	+	RNA	INS	-	-	CA	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	19	12814690	12814691	-	CA	INS	TNPO2	NM_001136196.1	human	genbank	58_37c	-1	validated	intronic	c.2023-76_2023-75	e17-75	0.000:0.000	-	-	-	no_errors
ENSG00000247947	0	genome.wustl.edu	37	22	46438960	46438960	+	RNA	SNP	C	T	T	rs145142871	by1000genomes	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	22	46438960	46438960	C	T	SNP	ENSG00000231711	ENST00000421538	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-46438960	NULL	0.000	-	-	-	no_coding_region
GATA3	2625	genome.wustl.edu	37	10	8115873	8115874	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	10	8115873	8115874	-	C	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1222_1223	p.P409fs	0.876:0.903	NULL	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GLI3	2737	genome.wustl.edu	37	7	42007317	42007317	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	42007317	42007317	C	G	SNP	GLI3	NM_000168.5	human	genbank	58_37c	-1	reviewed	missense	c.2308	p.A770P	0.972	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
GPS2	2874	genome.wustl.edu	37	17	7217398	7217398	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	17	7217398	7217398	C	-	DEL	GPS2	NM_004489.4	human	genbank	58_37c	-1	reviewed	splice_site_del	c.397+1	e4+1	1.000	-	-	-	no_errors
HRC	3270	genome.wustl.edu	37	19	49657711	49657725	+	In_Frame_Del	DEL	CATCATCATCATCAT	CATCATCATCATCAT	-	rs10533934	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	CATCATCATCATCAT	CATCATCATCATCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	19	49657711	49657725	CATCATCATCATCAT	-	DEL	HRC	NM_002152.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.784_770	p.DDDDD257in_frame_del	0.165:0.109:0.119:0.136:0.120:0.147:0.127:0.067:0.074:0.005:0.003:0.023:0.006:0.000:0.004	NULL	HMMPfam_Hist_rich_Ca-bd	-	no_errors
IGF1R	3480	genome.wustl.edu	37	15	99478057	99478057	+	Silent	SNP	C	C	T	rs35449468	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	15	99478057	99478057	C	T	SNP	IGF1R	NM_000875.3	human	genbank	58_37c	+1	reviewed	silent	c.2961	p.Y987	0.967	superfamily_Kinase_like	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_Furin-like,HMMSmart_FU,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Grow_fac_recept,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52058	-	no_errors
KCNH1	3756	genome.wustl.edu	37	1	210857470	210857470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	1	210857470	210857470	C	T	SNP	KCNH1	NM_172362.2	human	genbank	58_37c	-1	reviewed	missense	c.2123	p.R708Q	1.000	NULL	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMSmart_SM00086,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
KCNN3	3782	genome.wustl.edu	37	1	154842200	154842205	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	GCTGCT	GCTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	1	154842200	154842205	GCTGCT	-	DEL	KCNN3	NM_002249.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.241_236	p.QQ79in_frame_del	0.982:0.903:0.760:0.739:0.710:0.721	NULL	HMMPfam_CaMBD,superfamily_Small-conductance potassium channel,HMMPfam_SK_channel,HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	-	no_errors
KRTAP5-10	387273	genome.wustl.edu	37	11	71276657	71276657	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	71276657	71276657	A	G	SNP	KRTAP5-10	NM_001012710.1	human	genbank	58_37c	+1	validated	silent	c.24	p.G8	0.965	NULL	PatternScan_VWFC_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
LMBR1	64327	genome.wustl.edu	37	7	156521383	156521383	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	156521383	156521383	T	C	SNP	LMBR1	NM_022458.3	human	genbank	58_37c	-1	reviewed	silent	c.870	p.R290	1.000	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors
LOC100287041	0	genome.wustl.edu	37	2	110873467	110873468	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	2	110873467	110873468	-	G	INS	LOC100287041	XM_002342263.1	human	genbank	58_37c	+1	model	frame_shift_ins	c.224_225	p.K79fs	1.000:1.000	NULL	NULL	-	no_errors
LOC100287951	0	genome.wustl.edu	37	4	10413217	10413217	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	4	10413217	10413217	G	A	SNP	LOC100287951	XM_002342440.1	human	genbank	58_37c	+1	model	silent	c.294	p.V98	0.032	HMMPfam_Tctex-1	HMMPfam_Tctex-1	-	pseudogene
MAP3K1	4214	genome.wustl.edu	37	5	56176548	56176548	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	56176548	56176548	C	T	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	nonsense	c.2098	p.Q700*	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56189442	56189442	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	56189442	56189442	C	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.4474	p.Q1492fs	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MAPK8IP3	23162	genome.wustl.edu	37	16	1798259	1798259	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	16	1798259	1798259	G	T	SNP	MAPK8IP3	NM_015133.3	human	genbank	58_37c	+1	reviewed	missense	c.1006	p.D336Y	1.000	NULL	superfamily_WD40 repeat-like,HMMPfam_Jnk-SapK_ap_N	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17086085	17086086	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	1	17086085	17086086	-	C	INS	MST1P9	NR_002729.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.998:0.997	-	-	-	pseudogene
NLRP5	126206	genome.wustl.edu	37	19	56538873	56538873	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	19	56538873	56538873	G	A	SNP	NLRP5	NM_153447.4	human	genbank	58_37c	+1	reviewed	missense	c.1274	p.R425H	0.019	HMMPfam_NACHT	HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047,superfamily_SSF52540	-	no_errors
NNT	23530	genome.wustl.edu	37	5	43702838	43702838	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	43702838	43702838	G	C	SNP	NNT	NM_012343.3	human	genbank	58_37c	+1	reviewed	missense	c.3111	p.Q1037H	1.000	HMMPfam_PNTB,superfamily_SSF52467	HMMPfam_PNTB,HMMPfam_AlaDh_PNT_C,HMMPfam_AlaDh_PNT_N,PatternScan_ALADH_PNT_1,PatternScan_ALADH_PNT_2,superfamily_NAD(P)-bd,superfamily_SSF52283,superfamily_SSF52467	-	no_errors
OR2F1	26211	genome.wustl.edu	37	7	143657386	143657386	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	143657386	143657386	G	A	SNP	OR2F1	NM_012369.2	human	genbank	58_37c	+1	provisional	missense	c.323	p.G108D	0.690	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR4C45	403257	genome.wustl.edu	37	11	48367308	48367308	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	11	48367308	48367308	G	T	SNP	OR4C45	ENST00000415304	human	ensembl	58_37c	-1	known	missense	c.529	p.H177N	0.631	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PNCK	139728	genome.wustl.edu	37	X	152937334	152937334	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	152937334	152937334	C	A	SNP	PNCK	NM_001039582.3	human	genbank	58_37c	-1	validated	splice_site	c.663+1	e5+1	1.000	-	-	-	no_errors
PRND	23627	genome.wustl.edu	37	20	4705266	4705266	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	20	4705266	4705266	G	A	SNP	PRND	NM_012409.2	human	genbank	58_37c	+1	reviewed	silent	c.69	p.A23	0.000	NULL	HMMPfam_Prion,superfamily_Prion-like	-	no_errors
RAD50	10111	genome.wustl.edu	37	5	131926953	131926953	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	5	131926953	131926953	T	C	SNP	RAD50	NM_005732.3	human	genbank	58_37c	+1	reviewed	missense	c.1490	p.V497A	0.996	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,HMMPfam_Rad50_zn_hook,superfamily_Prefoldin,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SAMD9	54809	genome.wustl.edu	37	7	92733180	92733180	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	92733180	92733180	G	C	SNP	SAMD9	NM_017654.2	human	genbank	58_37c	-1	validated	missense	c.2231	p.T744S	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SAM,superfamily_SAM_homology	-	no_errors
SREBF2	6721	genome.wustl.edu	37	22	42281016	42281016	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	22	42281016	42281016	G	A	SNP	SREBF2	NM_004599.2	human	genbank	58_37c	+1	reviewed	splice_site	c.2208+1	e11+1	1.000	-	-	-	no_errors
STARD8	9754	genome.wustl.edu	37	X	67938433	67938433	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	67938433	67938433	C	T	SNP	STARD8	NM_001142503.2	human	genbank	58_37c	+1	reviewed	silent	c.1677	p.R559	0.259	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_START,HMMSmart_SM00234,superfamily_GTPase activation domain GAP,superfamily_Bet v1-like	-	no_errors
STK25	10494	genome.wustl.edu	37	2	242440175	242440175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	2	242440175	242440175	C	T	SNP	STK25	NM_006374.3	human	genbank	58_37c	-1	provisional	missense	c.298	p.G100S	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TBC1D29	26083	genome.wustl.edu	37	17	28887183	28887183	+	Missense_Mutation	SNP	C	C	T	rs145160882	byFrequency	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	17	28887183	28887183	C	T	SNP	TBC1D29	NM_015594.2	human	genbank	58_37c	+1	validated	missense	c.61	p.R21W	0.008	superfamily_RabGAP_TBC	superfamily_RabGAP_TBC	-	no_errors
TRIM71	131405	genome.wustl.edu	37	3	32933156	32933156	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	3	32933156	32933156	G	T	SNP	TRIM71	NM_001039111.1	human	genbank	58_37c	+1	provisional	missense	c.2460	p.M820I	1.000	HMMPfam_NHL,superfamily_SSF101898	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_NHL,HMMSmart_IG_FLMN,HMMSmart_RING,superfamily_Ig_E-set,HMMPfam_Filamin,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF101898	-	no_errors
TRIP4	9325	genome.wustl.edu	37	15	64701983	64701983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	15	64701983	64701983	G	A	SNP	TRIP4	NM_016213.3	human	genbank	58_37c	+1	validated	silent	c.999	p.R333	1.000	NULL	HMMPfam_ASCH,HMMPfam_zf-C2HC5	-	no_errors
TRO	7216	genome.wustl.edu	37	X	54955782	54955782	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	X	54955782	54955782	G	A	SNP	TRO	NM_001039705.1	human	genbank	58_37c	+1	reviewed	silent	c.2625	p.T875	0.000	NULL	HMMPfam_MAGE	-	no_errors
UNC13B	10497	genome.wustl.edu	37	9	35376118	35376118	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	9	35376118	35376118	C	G	SNP	UNC13B	NM_006377.3	human	genbank	58_37c	+1	reviewed	missense	c.1462	p.P488A	1.000	HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889	HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889	-	no_errors
WHAMML1	339005	genome.wustl.edu	37	15	23191911	23191911	+	RNA	SNP	C	C	T	rs147199465	by1000genomes	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	15	23191911	23191911	C	T	SNP	WHAMML1	NR_003521.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.992	-	-	-	pseudogene
ZBTB49	0	genome.wustl.edu	37	4	4322466	4322466	+	Missense_Mutation	SNP	G	G	A	rs141272395	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	4	4322466	4322466	G	A	SNP	ZBTB49	NM_145291.3	human	genbank	58_37c	+1	validated	missense	c.1721	p.R574H	0.974	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF277	11179	genome.wustl.edu	37	7	111982649	111982649	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	7	111982649	111982649	C	G	SNP	ZNF277	NM_021994.2	human	genbank	58_37c	+1	validated	silent	c.1218	p.L406	0.983	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF416	55659	genome.wustl.edu	37	19	58083540	58083540	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e99a4753-10db-4823-953d-e878a90e6b01	c473b5c1-e471-4517-bdaf-6491c768f5c4	19	58083540	58083540	G	A	SNP	ZNF416	NM_017879.1	human	genbank	58_37c	-1	provisional	missense	c.1732	p.R578C	0.000	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
