Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AP1G2	8906	genome.wustl.edu	37	14	24035346	24035346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	14	24035346	24035346	C	T	SNP	AP1G2	NM_003917.2	human	genbank	58_37c	-1	reviewed	missense	c.495	p.M165I	1.000	HMMPfam_Adaptin_N,superfamily_ARM-type_fold	HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_Alpha_adaptinC2,superfamily_Clath_adapt,superfamily_ARM-type_fold	-	no_errors
ATN1	1822	genome.wustl.edu	37	12	7045891	7045892	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	12	7045891	7045892	-	CAG	INS	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.1461_1462	p.491in_frame_insQ	0.002:0.834	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
ATP12A	479	genome.wustl.edu	37	13	25281421	25281421	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	13	25281421	25281421	C	T	SNP	ATP12A	NM_001676.5	human	genbank	58_37c	+1	reviewed	silent	c.2343	p.R781	1.000	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_errors
ATP5SL	55101	genome.wustl.edu	37	19	41939224	41939224	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	19	41939224	41939224	A	G	SNP	ATP5SL	NM_018035.2	human	genbank	58_37c	-1	validated	silent	c.549	p.G183	0.237	superfamily_RNI-like	superfamily_RNI-like	-	no_errors
BCMO1	53630	genome.wustl.edu	37	16	81279117	81279117	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	16	81279117	81279117	C	T	SNP	BCMO1	ENST00000425577	human	ensembl	58_37c	+1	known	nonsense	c.25	p.Q9*	0.852	HMMPfam_RPE65	HMMPfam_RPE65	-	no_errors
BIN1	274	genome.wustl.edu	37	2	127806177	127806177	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	127806177	127806177	G	A	SNP	BIN1	NM_139343.1	human	genbank	58_37c	-1	reviewed	silent	c.1707	p.S569	0.075	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BAR,HMMSmart_SM00721	-	no_errors
CCDC136	64753	genome.wustl.edu	37	7	128434806	128434806	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	7	128434806	128434806	G	A	SNP	CCDC136	NM_022742.3	human	genbank	58_37c	+1	validated	silent	c.330	p.Q110	1.000	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
CDCA7	83879	genome.wustl.edu	37	2	174230273	174230273	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	174230273	174230273	G	A	SNP	CDCA7	NM_031942.4	human	genbank	58_37c	+1	reviewed	missense	c.988	p.E330K	0.998	NULL	HMMPfam_zf-4CXXC_R1	-	no_errors
EIF2AK3	9451	genome.wustl.edu	37	2	88857363	88857364	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	88857363	88857364	-	C	INS	EIF2AK3	NM_004836.5	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.3242_3241	p.D1081fs	1.000:1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
ENSG00000207242	0	genome.wustl.edu	37	17	10761290	10761290	+	RNA	DEL	A	A	-	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	17	10761290	10761290	A	-	DEL	ENSG00000207242	ENST00000384513	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.010	-	-	-	no_errors
ENSG00000237029	0	genome.wustl.edu	37	8	86555155	86555155	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	8	86555155	86555155	G	A	SNP	ENSG00000237029	ENST00000456858	human	ensembl	58_37c	-1	known	silent	c.1545	p.Y515	0.960	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T	-	no_errors
ENSG00000245258	0	genome.wustl.edu	37	17	80407039	80407039	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	17	80407039	80407039	G	A	SNP	C17orf62	NM_001033046.2	human	genbank	58_37c	-1	validated	splice_region	c.85+7	e1+7	0.231	-	-	-	no_errors
FANCA	2175	genome.wustl.edu	37	16	89836576	89836576	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	16	89836576	89836576	G	-	DEL	FANCA	NM_000135.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.2314	p.Q772fs	1.000	NULL	HMMPfam_Fanconi_A	-	no_errors
FER1L5	90342	genome.wustl.edu	37	2	97351984	97351984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	97351984	97351984	G	A	SNP	FER1L5	NM_001113382.1	human	genbank	58_37c	+1	provisional	missense	c.2111	p.R704Q	0.996	HMMPfam_FerB	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
GIPC3	126326	genome.wustl.edu	37	19	3590123	3590123	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	19	3590123	3590123	T	-	DEL	GIPC3	NM_133261.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.874	p.F292fs	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors
GPC5	2262	genome.wustl.edu	37	13	92345973	92345973	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	13	92345973	92345973	G	A	SNP	GPC5	NM_004466.4	human	genbank	58_37c	+1	reviewed	silent	c.858	p.A286	0.060	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
GPR32	2854	genome.wustl.edu	37	19	51274851	51274851	+	Missense_Mutation	SNP	A	A	C	rs78840344	byCluster	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	19	51274851	51274851	A	C	SNP	GPR32	NM_001506.1	human	genbank	58_37c	+1	provisional	missense	c.994	p.T332P	0.018	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
IGHV3-6	0	genome.wustl.edu	37	14	106322070	106322070	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	14	106322070	106322070	T	A	SNP	IGHM	ENST00000496208	human	ensembl	58_37c	-1	known	missense	c.251	p.H84L	0.004	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	-	no_start_codon
LOC283398	283398	genome.wustl.edu	37	12	94942395	94942395	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	12	94942395	94942395	A	T	SNP	LOC283398	XM_208658.8	human	genbank	58_37c	+1	model	missense	c.715	p.T239S	0.998	HMMPfam_ATP-grasp_2,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_Ligase_CoA,HMMPfam_ATP-grasp_2,superfamily_Succinyl-CoA synthetase domains,PatternScan_SUCCINYL_COA_LIG_3,superfamily_Glutathione synthetase ATP-binding domain-like	-	pseudogene
LOC728531	728531	genome.wustl.edu	37	1	224191297	224191310	+	Frame_Shift_Del	DEL	TCAGATGCCTGGTA	TCAGATGCCTGGTA	-	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	TCAGATGCCTGGTA	TCAGATGCCTGGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	1	224191297	224191310	TCAGATGCCTGGTA	-	DEL	LOC728531	XM_001130913.3	human	genbank	58_37c	+1	model	frame_shift_del	c.129_142	p.C43fs	0.985:0.998:0.999:1.000:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000	HMMPfam_Septin	HMMPfam_Septin	-	no_errors
LPHN3	23284	genome.wustl.edu	37	4	62935938	62935938	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	4	62935938	62935938	T	G	SNP	LPHN3	NM_015236.4	human	genbank	58_37c	+1	reviewed	missense	c.3722	p.V1241G	1.000	HMMPfam_Latrophilin	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMPfam_Gal_Lectin,HMMPfam_HRM,HMMSmart_SM00008,HMMPfam_OLF,HMMSmart_SM00284,HMMPfam_Latrophilin,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LRRC4B	94030	genome.wustl.edu	37	19	51022088	51022088	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	19	51022088	51022088	G	A	SNP	LRRC4B	NM_001080457.1	human	genbank	58_37c	-1	provisional	silent	c.882	p.H294	1.000	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
MTR	4548	genome.wustl.edu	37	1	236959013	236959013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	1	236959013	236959013	G	A	SNP	MTR	NM_000254.2	human	genbank	58_37c	+1	reviewed	missense	c.10	p.A4T	0.159	NULL	HMMPfam_Pterin_bind,HMMPfam_S-methyl_trans,superfamily_Homocysteine S-methyltransferase,HMMPfam_B12-binding_2,superfamily_Methionine synthase domain,HMMPfam_Met_synt_B12,superfamily_Methionine synthase activation domain-like,HMMPfam_B12-binding,superfamily_Cobalamin (vitamin B12)-binding domain,superfamily_Dihydropteroate synthetase-like	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195510762	195510762	+	Silent	SNP	G	G	A	rs2911273	byCluster;byFrequency	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	3	195510762	195510762	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	silent	c.7689	p.V2563	0.018	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
OR51A7	119687	genome.wustl.edu	37	11	4929530	4929530	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	11	4929530	4929530	G	T	SNP	OR51A7	NM_001004749.1	human	genbank	58_37c	+1	provisional	missense	c.931	p.G311W	0.006	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PARP3	10039	genome.wustl.edu	37	3	51981815	51981815	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	3	51981815	51981815	C	A	SNP	PARP3	NM_001003931.2	human	genbank	58_37c	+1	reviewed	missense	c.1357	p.L453M	0.883	HMMPfam_PARP,superfamily_SSF56399	HMMPfam_PARP_reg,superfamily_PARP_reg,HMMPfam_WGR,HMMSmart_WGR,HMMPfam_PARP,superfamily_SSF56399	-	no_errors
PLEKHA9	51054	genome.wustl.edu	37	12	45567083	45567083	+	Missense_Mutation	SNP	C	C	T	rs150051178	byFrequency	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	12	45567083	45567083	C	T	SNP	PLEKHA9	NM_015899.1	human	genbank	58_37c	-1	provisional	missense	c.1066	p.V356I	0.124	HMMPfam_GLTP,superfamily_Glycolipid_transfer_prot	HMMPfam_GLTP,superfamily_Glycolipid_transfer_prot	-	no_errors
RARB	5915	genome.wustl.edu	37	3	25542800	25542800	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	3	25542800	25542800	G	A	SNP	RARB	NM_000965.3	human	genbank	58_37c	+1	reviewed	missense	c.434	p.G145E	1.000	HMMPfam_zf-C4,HMMSmart_ZnF_C4,superfamily_Str_ncl_receptor,superfamily_SSF57716	HMMPfam_Hormone_recep,HMMSmart_HOLI,HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,superfamily_SSF57716	-	no_errors
ROCK1	6093	genome.wustl.edu	37	18	18586384	18586384	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	18	18586384	18586384	G	A	SNP	ROCK1	NM_005406.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1813	p.Q605*	1.000	NULL	HMMPfam_HR1,HMMSmart_S_TK_X,HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Rho_Binding,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_SSF50729,superfamily_SSF57889	-	no_errors
SLC20A2	6575	genome.wustl.edu	37	8	42297142	42297142	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	8	42297142	42297142	G	A	SNP	SLC20A2	NM_006749.3	human	genbank	58_37c	-1	provisional	nonsense	c.760	p.R254*	0.017	HMMPfam_PHO4	HMMPfam_PHO4	-	no_errors
SLC35F4	341880	genome.wustl.edu	37	14	58048140	58048140	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	14	58048140	58048140	C	T	SNP	SLC35F4	NM_001080455.1	human	genbank	58_37c	-1	provisional	missense	c.707	p.R236Q	1.000	NULL	HMMPfam_DUF6,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
SNCAIP	9627	genome.wustl.edu	37	5	121726839	121726839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	5	121726839	121726839	C	T	SNP	SNCAIP	NM_005460.2	human	genbank	58_37c	+1	reviewed	missense	c.10	p.P4S	1.000	NULL	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
TIE1	7075	genome.wustl.edu	37	1	43773137	43773137	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	1	43773137	43773137	G	A	SNP	TIE1	NM_005424.2	human	genbank	58_37c	+1	provisional	silent	c.807	p.Q269	1.000	HMMPfam_Laminin_EGF	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_Laminin_EGF,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,HMMSmart_EGF,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726,superfamily_SSF57196	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179425252	179425252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	179425252	179425252	G	T	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.77897	p.P25966H	0.992	HMMPfam_fn3	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179449558	179449558	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	2	179449558	179449558	G	A	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	nonsense	c.57100	p.R19034*	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
ZNF800	168850	genome.wustl.edu	37	7	127026205	127026205	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0IN-01A-11W-A050-09	TCGA-B6-A0IN-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ee2c9198-cea3-4a54-b96b-834a70c30d2f	a4819d1f-61d6-4804-89de-3a3867e8fbbc	7	127026205	127026205	A	G	SNP	ZNF800	ENST00000265827	human	ensembl	58_37c	-1	known	silent	c.66	p.Y22	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
