Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
TAS1R1	80835	genome.wustl.edu	37	1	6638925	6638925	+	Missense_Mutation	SNP	C	C	A	rs41278022	byCluster;byFrequency;by1000genomes	TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_138697.3	+1	reviewed	p.R603S	0.034	149	0%	157	27.4%	2	100%	benign(0.086)	tolerated(0.31)	neutral(0.034)	HMMPfam_7tm_3
CAPZB	832	genome.wustl.edu	37	1	19705072	19705072	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	ENST00000375145	-1	known	p.E159	1.000	167	0%	278	28.8%	273	8.4%	-	-	-	HMMPfam_F_actin_cap_B,superfamily_Subunits of heterodimeric actin filament capping protein Capz
MEF2D	4209	genome.wustl.edu	37	1	156438046	156438046	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_005920.2	-1	provisional	p.T431	1.000	37	0%	83	16.9%	29	3.4%	-	-	-	NULL
IGFN1	91156	genome.wustl.edu	37	1	201182687	201182687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	ENST00000451870	+1	known	p.A432V	0.001	65	0%	129	22.5%	0	-	possibly_damaging(0.647)	deleterious(0.02)	deleterious(0.610)	NULL
DPYSL5	56896	genome.wustl.edu	37	2	27121505	27121505	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_020134.3	+1	validated	p.G46	0.227	89	0%	236	48.3%	0	-	-	-	-	superfamily_Metalo_hydrolase
KCMF1	56888	genome.wustl.edu	37	2	85276519	85276519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_020122.4	+1	validated	p.R211H	1.000	131	0%	299	12.7%	58	6.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TEKT4	150483	genome.wustl.edu	37	2	95540689	95540689	+	Silent	SNP	C	C	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_144705.2	+1	provisional	p.R294	0.146	72	0%	142	23.9%	1	0%	-	-	-	HMMPfam_Tektin
FAM123C	205147	genome.wustl.edu	37	2	131520654	131520654	+	Silent	SNP	A	A	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001105193.1	+1	validated	p.R337	0.018	39	0%	61	13.1%	0	-	-	-	-	HMMPfam_WTX
METTL8	79828	genome.wustl.edu	37	2	172195757	172195757	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	ENST00000375258	-1	known	p.H181Q	0.000	296	0.3%	653	19.3%	1	0%	benign(0.045)	tolerated(0.33)	neutral(0.026)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
TTN	7273	genome.wustl.edu	37	2	179485147	179485147	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	ENST00000356127	-1	known	p.D12799	1.000	213	0%	278	32%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
RBM5	10181	genome.wustl.edu	37	3	50155840	50155840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_005778.1	+1	provisional	p.K800R	1.000	120	0%	257	19.8%	61	19.6%	possibly_damaging(0.945)	tolerated(0.12)	deleterious(0.650)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952088	178952088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_006218.2	+1	reviewed	p.H1048R	1.000	144	0%	320	50.6%	24	45.8%	benign(0.047)	tolerated(1)	neutral(0.003)	HMMSmart_PI3Kc,superfamily_Kinase_like
PIK3R1	5295	genome.wustl.edu	37	5	67589605	67589616	+	In_Frame_Del	DEL	TCAAGAAAAAAG	TCAAGAAAAAAG	-	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	TCAAGAAAAAAG	TCAAGAAAAAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_181523.1	+1	reviewed	p.QEKS457in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
CTNNA1	1495	genome.wustl.edu	37	5	138269727	138269727	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001903.2	+1	validated	p.H890	0.476	92	0%	239	24.3%	205	14.6%	-	-	-	NULL
LOC100128372	100128372	genome.wustl.edu	37	6	2341909	2341909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	XM_001716747.1	+1	model	p.D76Y	0.999	4	0.000	15	0.533	6	0%	-	-	-	HMMPfam_HMG14_17,HMMSmart_SM00527
BCLAF1	9774	genome.wustl.edu	37	6	136599687	136599687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_014739.2	-1	reviewed	p.R111H	1.000	172	0%	321	15.3%	9	0%	unknown(0)	deleterious(0.03)	-	NULL
PDE10A	10846	genome.wustl.edu	37	6	165829718	165829718	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001130690.1	-1	validated	p.V350	1.000	323	0%	651	18.1%	2	0%	-	-	-	HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF55781
PKD1L1	168507	genome.wustl.edu	37	7	47851554	47851554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_138295.2	-1	reviewed	p.P2481H	0.996	134	0%	187	11.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PKD_channel
EGR3	1960	genome.wustl.edu	37	8	22548381	22548381	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_004430.2	-1	reviewed	p.R257G	1.000	130	0%	223	15.2%	4	0%	possibly_damaging(0.899)	deleterious(0)	deleterious(0.800)	superfamily_C2H2 and C2HC zinc fingers
FZD3	7976	genome.wustl.edu	37	8	28360563	28360563	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_017412.2	+1	reviewed	p.W11*	0.998	317	0%	516	40.1%	2	0%	-	-	-	NULL
PRDM14	63978	genome.wustl.edu	37	8	70964318	70964318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_024504.2	-1	validated	p.D570E	0.004	88	0%	216	17.6%	0	-	benign(0.007)	tolerated(0.36)	neutral(0.020)	NULL
KIAA1429	25962	genome.wustl.edu	37	8	95531478	95531478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_015496.3	-1	validated	p.D750Y	1.000	101	0%	208	13.9%	3	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
TMEM65	157378	genome.wustl.edu	37	8	125334371	125334371	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_194291.2	-1	validated	p.L164V	1.000	106	0%	352	30.7%	2	50%	probably_damaging(0.971)	tolerated(0.33)	neutral(0.437)	HMMPfam_DUF2453
TG	7038	genome.wustl.edu	37	8	133899479	133899479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_003235.4	+1	reviewed	p.T621M	0.947	138	0%	302	30.8%	0	-	benign(0.039)	deleterious(0)	neutral(0.447)	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain
ZNF250	58500	genome.wustl.edu	37	8	146108071	146108071	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_021061.3	-1	validated	p.S171C	0.000	250	0%	557	20.3%	3	0%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
PTCH1	5727	genome.wustl.edu	37	9	98209328	98209328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_000264.3	-1	reviewed	p.T1404A	1.000	47	0%	58	31%	7	0%	probably_damaging(0.971)	tolerated(0.09)	deleterious(0.710)	NULL
ASB13	79754	genome.wustl.edu	37	10	5691014	5691014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_024701.3	-1	reviewed	p.H146Y	0.959	91	0%	180	41.7%	4	0%	benign(0.202)	tolerated(1)	neutral(0.019)	HMMPfam_Ank,superfamily_Ankyrin repeat
CALHM2	51063	genome.wustl.edu	37	10	105206879	105206879	+	RNA	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NR_024552.1	-1	validated	NULL	0.001	32	0%	69	26.1%	47	2.1%	-	-	-	-
CTBP2	1488	genome.wustl.edu	37	10	126715053	126715053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_022802.2	-1	reviewed	p.V426M	0.028	41	0%	99	47.5%	0	-	benign(0.163)	tolerated(0.11)	neutral(0.286)	NULL
OR52N4	390072	genome.wustl.edu	37	11	5776455	5776455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001005175.2	+1	validated	p.T162N	0.000	236	0%	409	11%	0	-	possibly_damaging(0.455)	deleterious(0.03)	deleterious(0.513)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52N2	390077	genome.wustl.edu	37	11	5842475	5842475	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001005174.1	+1	provisional	p.E304*	0.344	126	0%	202	17.3%	0	-	-	-	-	superfamily_SSF81321
OR4C46	119749	genome.wustl.edu	37	11	51515905	51515905	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001004703.1	+1	provisional	p.N208	0.029	226	0%	389	14.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
STIP1	10963	genome.wustl.edu	37	11	63964833	63964833	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_006819.2	+1	validated	p.D255H	1.000	144	0%	308	34.4%	47	27.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452
ATG2A	23130	genome.wustl.edu	37	11	64665594	64665594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_015104.2	-1	validated	p.I1608V	0.959	58	0%	134	16.4%	14	0%	benign(0.001)	tolerated(1)	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25398260	25398260	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_033360.2	-1	reviewed	p.T20R	1.000	236	0%	503	12.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
LIMA1	51474	genome.wustl.edu	37	12	50571459	50571459	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001113546.1	-1	validated	p.W557*	1.000	159	0%	368	10.9%	14	0%	-	-	-	NULL
ACVRL1	94	genome.wustl.edu	37	12	52309848	52309848	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_000020.2	+1	reviewed	p.S359	0.253	49	0%	78	38.5%	70	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
KRT84	3890	genome.wustl.edu	37	12	52774226	52774226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_033045.3	-1	reviewed	p.Q449K	1.000	52	0%	165	17%	0	-	possibly_damaging(0.565)	deleterious(0)	deleterious(0.637)	HMMPfam_Filament
VEZT	55591	genome.wustl.edu	37	12	95694438	95694438	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_017599.3	+1	validated	p.E777*	0.998	46	0%	79	21.5%	17	5.8%	-	-	-	NULL
RNF10	9921	genome.wustl.edu	37	12	121009031	121009031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_014868.4	+1	reviewed	p.Q693H	0.998	108	0%	229	27.5%	146	24.6%	possibly_damaging(0.677)	tolerated(0.1)	deleterious(0.527)	NULL
FAM48A	55578	genome.wustl.edu	37	13	37607713	37607713	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001014286.2	-1	validated	p.L194	0.558	135	0%	277	36.1%	4	0%	-	-	-	NULL
UPF3A	65110	genome.wustl.edu	37	13	115070344	115070344	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_023011.2	+1	reviewed	p.A462fs	0.822	-	-	-	-	-	-	-	-	-	NULL
AKAP6	9472	genome.wustl.edu	37	14	33293222	33293222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_004274.4	+1	reviewed	p.S2068L	1.000	103	0%	205	15.6%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
RPS29	6235	genome.wustl.edu	37	14	50053006	50053006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001030001.1	-1	reviewed	p.S20C	1.000	115	0%	209	62.2%	2083	32%	benign(0.006)	tolerated(0.28)	neutral(0.032)	HMMPfam_Ribosomal_S14
FAM71D	161142	genome.wustl.edu	37	14	67664950	67664950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_173526.2	+1	validated	p.H24Q	0.000	155	0%	339	49.3%	0	-	benign(0.001)	tolerated(0.7)	neutral(0.002)	NULL
MAGEL2	54551	genome.wustl.edu	37	15	23890003	23890003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_019066.4	-1	reviewed	p.A360T	0.844	52	0%	78	23.1%	0	-	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
XYLT1	64131	genome.wustl.edu	37	16	17202804	17202804	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_022166.3	-1	reviewed	p.N876	1.000	131	0%	286	29.4%	0	-	-	-	-	NULL
PSKH1	5681	genome.wustl.edu	37	16	67961351	67961351	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_006742.2	+1	validated	p.S361A	1.000	81	0%	101	36.6%	6	33.3%	benign(0.106)	tolerated(0.56)	neutral(0.014)	superfamily_Kinase_like
ADAT1	23536	genome.wustl.edu	37	16	75654584	75654584	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_012091.2	-1	reviewed	p.V38	0.961	168	0%	230	20%	2	0%	-	-	-	HMMSmart_SM00552
SLC7A5	8140	genome.wustl.edu	37	16	87873324	87873324	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_003486.5	-1	validated	p.S308C	0.997	76	0%	182	16.5%	40	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AA_permease
ZNF778	197320	genome.wustl.edu	37	16	89291210	89291211	+	Frame_Shift_Ins	INS	-	-	GTGA	rs113560259	byCluster;by1000genomes	TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	ENST00000306502	+1	known	p.E40fs	0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
C16orf7	9605	genome.wustl.edu	37	16	89785532	89785532	+	Silent	SNP	A	A	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	ENST00000261625	-1	known	p.T55	0.000	150	0%	331	39%	3	0%	-	-	-	NULL
TP53	7157	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_000546.4	-1	reviewed	p.Y220C	0.998	265	0%	365	48.8%	29	27.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
MBTD1	54799	genome.wustl.edu	37	17	49270231	49270231	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_017643.2	-1	validated	p.D534	0.998	261	0%	339	13.9%	1	100%	-	-	-	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
CA10	56934	genome.wustl.edu	37	17	50008395	50008395	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001082533.1	-1	reviewed	p.F78	1.000	201	0%	236	52.1%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ARSG	22901	genome.wustl.edu	37	17	66343266	66343266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_014960.3	+1	validated	p.G136D	1.000	274	0%	394	48%	2	0%	benign(0.053)	deleterious(0.04)	neutral(0.352)	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,superfamily_Alkaline_phosphatase_core
LAMA3	3909	genome.wustl.edu	37	18	21512168	21512168	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_198129.1	+1	reviewed	p.R2874T	0.473	175	0%	366	11.5%	5	40%	benign(0.122)	tolerated(0.44)	neutral(0.022)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CD226	10666	genome.wustl.edu	37	18	67563237	67563237	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_006566.2	-1	reviewed	p.E143*	0.090	123	0%	254	13.8%	0	-	-	-	-	HMMSmart_IGc2,HMMPfam_V-set,superfamily_SSF48726
NETO1	81832	genome.wustl.edu	37	18	70461400	70461400	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_138966.2	-1	reviewed	p.S197	0.444	181	0%	301	36.9%	0	-	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
DMKN	93099	genome.wustl.edu	37	19	36004003	36004003	+	Silent	SNP	T	T	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_033317.3	-1	reviewed	p.A125	0.000	196	0%	378	35.7%	10	50%	-	-	-	NULL
WDR62	284403	genome.wustl.edu	37	19	36592161	36592161	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_001083961.1	+1	validated	p.Q971	0.000	21	0%	69	15.9%	2	50%	-	-	-	NULL
LILRB2	10288	genome.wustl.edu	37	19	54782389	54782389	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_005874.3	-1	reviewed	p.S328*	0.030	111	0%	212	15.1%	3	0%	-	-	-	superfamily_Immunoglobulin
ZNF71	58491	genome.wustl.edu	37	19	57134084	57134084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_021216.4	+1	validated	p.R477C	0.523	48	0%	82	20.7%	2	0%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LZTR1	8216	genome.wustl.edu	37	22	21351542	21351542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_006767.3	+1	reviewed	p.R810W	1.000	121	0%	126	29.4%	12	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ENSG00000211459	0	genome.wustl.edu	37	MT	669	669	+	RNA	SNP	T	T	C	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	ENST00000389680	+1	known	NULL	NULL	223	0%	1092	21.6%	4142	22.6%	-	-	-	-
SSX5	6758	genome.wustl.edu	37	X	48054725	48054725	+	Splice_Site	SNP	C	C	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_021015.3	-1	reviewed	e1+1	0.018	352	0%	801	10.9%	0	-	-	-	-	-
LOC100288033	100288033	genome.wustl.edu	37	X	70888743	70888743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	XM_002343818.1	+1	model	p.V364M	0.000	35	0%	101	32.7%	0	-	-	-	-	NULL
ACSL4	2182	genome.wustl.edu	37	X	108926599	108926599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_022977.2	-1	reviewed	p.K39N	1.000	334	0%	675	10.2%	1	0%	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
FATE1	89885	genome.wustl.edu	37	X	150884676	150884676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_033085.2	+1	reviewed	p.Q29K	0.028	98	0%	200	12.5%	0	-	possibly_damaging(0.763)	tolerated(0.43)	neutral(0.296)	NULL
PDZD4	57595	genome.wustl.edu	37	X	153069728	153069728	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M8-01A-12D-A10B-09	TCGA-BG-A0M8-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e5c9bd8d-980d-47e9-9b0f-7cafecd625e9	9411bdaf-e59a-4884-b424-87193e1dfe94	NM_032512.2	-1	provisional	p.D464H	1.000	20	0%	34	20.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
