Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AMELX	265	genome.wustl.edu	37	X	11316986	11316986	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	X	11316986	11316986	C	T	SNP	AMELX	NM_182680.1	human	genbank	58_37c	+1	reviewed	nonsense	c.505	p.Q169*	1.000	HMMPfam_Amelogenin,HMMSmart_SM00818	HMMPfam_Amelogenin,HMMSmart_SM00818	-	no_errors
AQP2	359	genome.wustl.edu	37	12	50344816	50344816	+	Missense_Mutation	SNP	A	A	C	rs104894331	byCluster	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	12	50344816	50344816	A	C	SNP	AQP2	NM_000486.5	human	genbank	58_37c	+1	reviewed	missense	c.203	p.N68T	1.000	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
FUT2	2524	genome.wustl.edu	37	19	49206674	49206674	+	Nonsense_Mutation	SNP	G	G	A	rs601338	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	19	49206674	49206674	G	A	SNP	FUT2	NM_000511.5	human	genbank	58_37c	+1	reviewed	nonsense	c.461	p.W154*	1.000	HMMPfam_Glyco_transf_11	HMMPfam_Glyco_transf_11	-	no_errors
HAVCR1	26762	genome.wustl.edu	37	5	156482387	156482387	+	Silent	SNP	G	G	A	rs191117891	by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	5	156482387	156482387	G	A	SNP	HAVCR1	NM_001099414.1	human	genbank	58_37c	-1	reviewed	silent	c.204	p.H68	0.000	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	PatternScan_IG_MHC,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
HNRNPR	10236	genome.wustl.edu	37	1	23650213	23650213	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	23650213	23650213	T	G	SNP	HNRNPR	NM_001102398.1	human	genbank	58_37c	-1	reviewed	missense	c.511	p.K171Q	1.000	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
IGF1R	3480	genome.wustl.edu	37	15	99456511	99456511	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	15	99456511	99456511	G	A	SNP	IGF1R	NM_000875.3	human	genbank	58_37c	+1	reviewed	missense	c.1828	p.V610I	1.000	superfamily_FN_III-like	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_Furin-like,HMMSmart_FU,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Grow_fac_recept,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52058	-	no_errors
ITPR1	3708	genome.wustl.edu	37	3	4856841	4856841	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	3	4856841	4856841	T	C	SNP	ITPR1	NM_001099952.2	human	genbank	58_37c	+1	reviewed	silent	c.7662	p.A2554	0.047	NULL	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
KIAA1632	57724	genome.wustl.edu	37	18	43534880	43534880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	18	43534880	43534880	G	A	SNP	KIAA1632	NM_020964.2	human	genbank	58_37c	-1	validated	missense	c.488	p.T163I	0.011	NULL	NULL	-	no_errors
KIRREL	55243	genome.wustl.edu	37	1	158059318	158059318	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	158059318	158059318	G	T	SNP	KIRREL	NM_018240.5	human	genbank	58_37c	+1	validated	silent	c.1071	p.L357	0.993	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
LFNG	3955	genome.wustl.edu	37	7	2564376	2564376	+	Silent	SNP	G	G	A	rs151053753	by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	7	2564376	2564376	G	A	SNP	LFNG	NM_001040167.1	human	genbank	58_37c	+1	reviewed	silent	c.480	p.T160	0.997	HMMPfam_Fringe	HMMPfam_Fringe	-	no_errors
NHS	4810	genome.wustl.edu	37	X	17745442	17745443	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	X	17745442	17745443	TA	-	DEL	NHS	NM_198270.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.3153_3154	p.S1053fs	0.007:0.000	NULL	NULL	-	no_errors
PKD1	5310	genome.wustl.edu	37	16	2161666	2161666	+	Missense_Mutation	SNP	G	A	A	rs146887330	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	16	2161666	2161666	G	A	SNP	PKD1	NM_001009944.2	human	genbank	58_37c	-1	reviewed	missense	c.3502	p.P1168S	0.207	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_LRR_1,HMMPfam_REJ,HMMPfam_WSC,HMMSmart_SM00369,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,HMMSmart_SM00321,superfamily_C-type lectin-like,superfamily_L domain-like	-	no_errors
RPS6KA2	6196	genome.wustl.edu	37	6	166912078	166912078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	6	166912078	166912078	G	A	SNP	RPS6KA2	NM_001006932.1	human	genbank	58_37c	-1	reviewed	missense	c.689	p.T230M	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
RUNX1	861	genome.wustl.edu	37	21	36231791	36231791	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	21	36231791	36231791	T	C	SNP	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	missense	c.593	p.D198G	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
TNFRSF10C	8794	genome.wustl.edu	37	8	22973124	22973124	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	8	22973124	22973124	T	C	SNP	TNFRSF10C	NM_003841.2	human	genbank	58_37c	+1	reviewed	silent	c.384	p.C128	0.000	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578371	7578371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	17	7578371	7578371	C	T	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.559	p.G187S	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
UCK2	7371	genome.wustl.edu	37	1	165872480	165872480	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	165872480	165872480	G	C	SNP	UCK2	NM_012474.3	human	genbank	58_37c	+1	reviewed	silent	c.561	p.T187	0.000	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_PRK,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZNF462	58499	genome.wustl.edu	37	9	109771874	109771874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	9	109771874	109771874	G	A	SNP	ZNF462	NM_021224.4	human	genbank	58_37c	+1	validated	missense	c.7238	p.R2413H	1.000	superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,superfamily_beta-sandwich domain of Sec23/24	-	no_errors
