Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
KIAA0562	9731	genome.wustl.edu	37	1	3732014	3732014	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	1	3732014	3732014	C	T	SNP	KIAA0562	NM_014704.3	human	genbank	58_37c	-1	validated	silent	c.2730	p.P910	0.957	NULL	superfamily_ARM repeat	-	no_errors
PITPNC1	26207	genome.wustl.edu	37	17	65665709	65665709	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	17	65665709	65665709	C	T	SNP	PITPNC1	NM_012417.2	human	genbank	58_37c	+1	reviewed	missense	c.548	p.S183F	1.000	HMMPfam_IP_trans,superfamily_Bet v1-like	HMMPfam_IP_trans,superfamily_Bet v1-like	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	C	rs121909229	byCluster	TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	10	89692905	89692905	G	C	SNP	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	missense	c.389	p.R130P	1.000	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_DSPc,HMMSmart_SM00404,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SHARPIN	81858	genome.wustl.edu	37	8	145154289	145154289	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	8	145154289	145154289	G	A	SNP	SHARPIN	NM_030974.3	human	genbank	58_37c	-1	validated	silent	c.813	p.V271	1.000	superfamily_Ubiquitin-like	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_Ubiquitin-like,superfamily_NZF domain	-	no_errors
STARD9	57519	genome.wustl.edu	37	15	42984625	42984625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	15	42984625	42984625	G	A	SNP	STARD9	XM_001129482.3	human	genbank	58_37c	+1	model	missense	c.10591	p.E3531K	0.920	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Bet v1-like	-	no_errors
TBX4	9496	genome.wustl.edu	37	17	59557513	59557513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	17	59557513	59557513	C	T	SNP	TBX4	NM_018488.2	human	genbank	58_37c	+1	reviewed	missense	c.854	p.S285L	0.181	NULL	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
