Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
C9orf66	0	genome.wustl.edu	37	9	214549	214550	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	9	214549	214550	-	G	INS	C9orf66	NM_152569.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.848_847	p.H283fs	0.000:0.000	NULL	NULL	-	no_errors
CRIPAK	0	genome.wustl.edu	37	4	1388707	1388707	+	Missense_Mutation	SNP	G	G	A	rs149002857	byFrequency	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	4	1388707	1388707	G	A	SNP	CRIPAK	ENST00000382944	human	ensembl	58_37c	+1	known	missense	c.358	p.A120T	0.000	HMMSmart_SM00508	HMMSmart_SM00508	-	no_start_codon
CSMD3	0	genome.wustl.edu	37	8	113299452	113299452	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	8	113299452	113299452	C	T	SNP	CSMD3	NM_198123.1	human	genbank	58_37c	-1	validated	missense	c.9172	p.D3058N	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
DIAPH3	0	genome.wustl.edu	37	13	60435515	60435515	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	13	60435515	60435515	G	A	SNP	DIAPH3	ENST00000453990	human	ensembl	58_37c	-1	known	silent	c.1974	p.F658	0.000	HMMSmart_FH2	PatternScan_RNASE_PANCREATIC,HMMSmart_FH2,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
DNAH14	0	genome.wustl.edu	37	1	225306960	225306960	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	1	225306960	225306960	T	G	SNP	DNAH14	NM_001373.1	human	genbank	58_37c	+1	validated	missense	c.4130	p.V1377G	1.000	HMMPfam_DHC_N2	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_RVT_thumb,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ERBB2	0	genome.wustl.edu	37	17	37880261	37880261	+	Missense_Mutation	SNP	G	G	T	rs121913468	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	17	37880261	37880261	G	T	SNP	ERBB2	NM_004448.2	human	genbank	58_37c	+1	reviewed	missense	c.2305	p.D769Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_YLP,HMMPfam_Furin-like,HMMSmart_SM00261,PatternScan_PROTEIN_KINASE_TYR,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_EF_HAND_1,superfamily_L domain-like	-	no_errors
GDAP1L1	0	genome.wustl.edu	37	20	42893238	42893238	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	20	42893238	42893238	A	C	SNP	GDAP1L1	ENST00000445952	human	ensembl	58_37c	+1	known	missense	c.638	p.H213P	0.121	NULL	HMMPfam_GST_N,superfamily_Thioredoxin-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GON4L	0	genome.wustl.edu	37	1	155753682	155753682	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	1	155753682	155753682	T	G	SNP	GON4L	ENST00000477831	human	ensembl	58_37c	-1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_coding_region
LIPF	0	genome.wustl.edu	37	10	90427444	90427444	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	10	90427444	90427444	G	T	SNP	LIPF	NM_004190.2	human	genbank	58_37c	+1	reviewed	splice_site	c.223+1	e2+1	0.872	-	-	-	no_errors
LOC727770	0	genome.wustl.edu	37	1	142827044	142827044	+	RNA	SNP	G	A	A	rs80058690	byFrequency	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	1	142827044	142827044	G	A	SNP	LOC727770	XR_037208.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.056	-	-	-	pseudogene
MST1	0	genome.wustl.edu	37	3	49723916	49723916	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	3	49723916	49723916	T	G	SNP	MST1	NM_020998.3	human	genbank	58_37c	-1	reviewed	splice_site	c.848-2	e8-2	0.527	-	-	-	no_errors
MUC1	0	genome.wustl.edu	37	1	155160715	155160715	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	1	155160715	155160715	T	C	SNP	MUC1	NM_002456.4	human	genbank	58_37c	-1	reviewed	missense	c.206	p.N69S	0.793	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671	-	no_errors
MUC17	0	genome.wustl.edu	37	7	100685739	100685739	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	7	100685739	100685739	G	A	SNP	MUC17	NM_001040105.1	human	genbank	58_37c	+1	provisional	missense	c.11042	p.G3681D	0.001	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_EGF_1,superfamily_EGF/Laminin,superfamily_SEA domain	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	3	178916944	178916944	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.331	p.K111E	1.000	superfamily_SSF54236	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RGPD8	0	genome.wustl.edu	37	2	113147238	113147238	+	Missense_Mutation	SNP	A	A	G	rs3960708	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	2	113147238	113147238	A	G	SNP	RGPD8	ENST00000302558	human	ensembl	58_37c	-1	known	missense	c.3284	p.L1095P	0.958	HMMPfam_Ran_BP1,HMMSmart_SM00160,superfamily_PH domain-like	HMMPfam_Ran_BP1,HMMSmart_SM00160,HMMPfam_GRIP,HMMSmart_SM00755,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_PH domain-like	-	no_errors
RHAG	0	genome.wustl.edu	37	6	49582475	49582475	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	6	49582475	49582475	G	A	SNP	RHAG	NM_000324.2	human	genbank	58_37c	-1	reviewed	silent	c.732	p.Y244	1.000	HMMPfam_Ammonium_transp,superfamily_RH_like_transpt	HMMPfam_Ammonium_transp,superfamily_RH_like_transpt	-	no_errors
SPHKAP	0	genome.wustl.edu	37	2	228855865	228855865	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	2	228855865	228855865	G	T	SNP	SPHKAP	NM_001142644.1	human	genbank	58_37c	-1	validated	missense	c.4810	p.P1604T	0.003	NULL	HMMPfam_AKAP_110	-	no_errors
TLN1	0	genome.wustl.edu	37	9	35706350	35706350	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	9	35706350	35706350	G	A	SNP	TLN1	NM_006289.3	human	genbank	58_37c	-1	reviewed	missense	c.5204	p.A1735V	1.000	NULL	HMMPfam_I_LWEQ,HMMSmart_ILWEQ,HMMPfam_VBS,HMMPfam_Talin_middle,superfamily_Talin_cent,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF109885,superfamily_SSF50729,superfamily_SSF54236	-	no_errors
TNK2	0	genome.wustl.edu	37	3	195595043	195595043	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	3	195595043	195595043	C	T	SNP	TNK2	NM_001010938.1	human	genbank	58_37c	-1	reviewed	missense	c.2315	p.G772E	0.005	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_GTPase_binding,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
TP53	0	genome.wustl.edu	37	17	7577541	7577541	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	17	7577541	7577541	T	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.740	p.N247I	1.000	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
ZBTB33	0	genome.wustl.edu	37	X	119389142	119389142	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	X	119389142	119389142	A	C	SNP	ZBTB33	NM_006777.3	human	genbank	58_37c	+1	reviewed	missense	c.1872	p.E624D	0.998	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF626	0	genome.wustl.edu	37	19	20807177	20807178	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A1FE-01A-11D-A13L-09	TCGA-BH-A1FE-11B-14D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5e71fc3a-a2f4-4899-9c1f-8fee1ef29e2e	e4e4b299-d680-4777-bd54-f0fdc60aae0b	19	20807177	20807178	-	A	INS	ZNF626	NM_001076675.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1506_1505	p.I503fs	1.000:0.990	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
