Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACSS3	0	genome.wustl.edu	37	12	81627233	81627233	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	12	81627233	81627233	G	T	SNP	ACSS3	NM_024560.2	human	genbank	58_37c	+1	validated	missense	c.1702	p.A568S	0.997	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
AP2A1	0	genome.wustl.edu	37	19	50302103	50302103	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	50302103	50302103	G	T	SNP	AP2A1	NM_014203.2	human	genbank	58_37c	+1	reviewed	missense	c.859	p.V287L	0.991	HMMPfam_Adaptin_N,superfamily_ARM repeat	HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptin_C,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Subdomain of clathrin and coatomer appendage domain,superfamily_Clathrin adaptor appendage domain,superfamily_ARM repeat	-	no_errors
ARHGAP39	0	genome.wustl.edu	37	8	145772934	145772934	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	8	145772934	145772934	G	A	SNP	ARHGAP39	NM_025251.1	human	genbank	58_37c	-1	validated	silent	c.1536	p.G512	0.932	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain,superfamily_GTPase activation domain GAP	-	no_errors
BIRC6	0	genome.wustl.edu	37	2	32640667	32640669	+	In_Frame_Del	DEL	AAT	AAT	-	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	AAT	AAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	2	32640667	32640669	AAT	-	DEL	BIRC6	NM_016252.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.2308_2310	p.N770in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_UQ_con,HMMSmart_SM00212,HMMPfam_BIR,HMMSmart_SM00238,superfamily_Galactose-binding domain-like,superfamily_UBC-like,superfamily_Inhibitor of apoptosis (IAP) repeat	-	no_errors
CA1	0	genome.wustl.edu	37	8	86242048	86242048	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	8	86242048	86242048	A	C	SNP	CA1	NM_001128829.2	human	genbank	58_37c	-1	reviewed	missense	c.539	p.F180C	1.000	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd	HMMPfam_Carb_anhydrase,superfamily_Euk_COanhd,PatternScan_ALPHA_CA_1	-	no_errors
CADM2	0	genome.wustl.edu	37	3	86115884	86115884	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	86115884	86115884	C	A	SNP	CADM2	NM_153184.3	human	genbank	58_37c	+1	validated	missense	c.1265	p.A422D	1.000	NULL	HMMSmart_4.1m,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_SSF48726	-	no_errors
CDK12	0	genome.wustl.edu	37	17	37618580	37618580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	17	37618580	37618580	G	A	SNP	CDK12	NM_016507.2	human	genbank	58_37c	+1	validated	missense	c.256	p.D86N	0.992	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CDKN1B	0	genome.wustl.edu	37	12	12870935	12870936	+	Frame_Shift_Ins	INS	-	-	GC	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	12	12870935	12870936	-	GC	INS	CDKN1B	NM_004064.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.162_163	p.S55fs	0.982:0.980	HMMPfam_CDI	HMMPfam_CDI	-	no_errors
CNTNAP2	0	genome.wustl.edu	37	7	147183037	147183037	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	7	147183037	147183037	A	C	SNP	CNTNAP2	NM_014141.5	human	genbank	58_37c	+1	reviewed	missense	c.1681	p.N561H	1.000	HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
DNAH12	0	genome.wustl.edu	37	3	57443861	57443861	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	57443861	57443861	G	A	SNP	DNAH12	NM_178504.4	human	genbank	58_37c	-1	validated	silent	c.2949	p.N983	0.999	HMMPfam_DHC_N2	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH3	0	genome.wustl.edu	37	16	21147728	21147728	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	16	21147728	21147728	G	A	SNP	DNAH3	NM_017539.1	human	genbank	58_37c	-1	provisional	missense	c.803	p.T268M	0.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DST	0	genome.wustl.edu	37	6	56333793	56333793	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	6	56333793	56333793	A	T	SNP	DST	NM_015548.4	human	genbank	58_37c	-1	reviewed	missense	c.14687	p.F4896Y	1.000	HMMPfam_GAS2,HMMSmart_SM00243	HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_GAS2,HMMSmart_SM00243,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
ENSG00000213108	0	genome.wustl.edu	37	6	137865376	137865377	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	6	137865376	137865377	-	T	INS	ENSG00000213108	ENST00000392326	human	ensembl	58_37c	-1	known	splice_site_ins	c.NULL	NULL	0.995:0.991	-	-	-	no_coding_region:pseudogene
ENSG00000236623	0	genome.wustl.edu	37	10	42391335	42391335	+	RNA	SNP	C	C	G	rs74192742	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	10	42391335	42391335	C	G	SNP	ENSG00000236623	ENST00000423802	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16949959	16949959	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	1	16949959	16949959	G	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors
FUT6	0	genome.wustl.edu	37	19	5832191	5832191	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	5832191	5832191	G	A	SNP	FUT6	NM_000150.2	human	genbank	58_37c	-1	reviewed	nonsense	c.388	p.R130*	0.961	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	no_errors
GADD45GIP1	0	genome.wustl.edu	37	19	13067699	13067699	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	13067699	13067699	C	T	SNP	GADD45GIP1	NM_052850.2	human	genbank	58_37c	-1	provisional	missense	c.328	p.E110K	0.012	HMMPfam_CR6_interact	HMMPfam_CR6_interact	-	no_errors
GNAI2	0	genome.wustl.edu	37	3	50289959	50289959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	50289959	50289959	C	T	SNP	GNAI2	NM_002070.2	human	genbank	58_37c	+1	reviewed	missense	c.292	p.P98S	0.962	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
KIAA1257	0	genome.wustl.edu	37	3	128706484	128706484	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	128706484	128706484	G	A	SNP	KIAA1257	NM_020741.2	human	genbank	58_37c	-1	predicted	silent	c.642	p.D214	0.001	NULL	NULL	-	no_errors
LOC100133029	0	genome.wustl.edu	37	1	68509700	68509700	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	1	68509700	68509700	A	G	SNP	LOC100133029	XR_078220.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.334	-	-	-	no_errors
LOC100289581	0	genome.wustl.edu	37	10	135491068	135491068	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	10	135491068	135491068	G	A	SNP	LOC100289581	XM_002343041.1	human	genbank	58_37c	+1	model	missense	c.679	p.A227T	0.986	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	pseudogene
LOC100291580	0	genome.wustl.edu	37	7	159928	159928	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	7	159928	159928	G	C	SNP	LOC100291580	XR_079033.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.008	-	-	-	pseudogene
LRRIQ3	0	genome.wustl.edu	37	1	74621549	74621549	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	1	74621549	74621549	C	T	SNP	LRRIQ3	NM_001105659.1	human	genbank	58_37c	-1	provisional	missense	c.575	p.G192E	0.976	NULL	HMMPfam_LRR_1,superfamily_Outer arm dynein light chain 1	-	no_errors
MIR1299	0	genome.wustl.edu	37	9	69002304	69002304	+	RNA	SNP	C	A	A	rs78546776	byFrequency	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	9	69002304	69002304	C	A	SNP	MIR1299	ENST00000459575	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
MPO	0	genome.wustl.edu	37	17	56356745	56356745	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	17	56356745	56356745	G	A	SNP	MPO	NM_000250.1	human	genbank	58_37c	-1	reviewed	silent	c.591	p.R197	1.000	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases,PatternScan_PEROXIDASE_1	-	no_errors
MUC15	0	genome.wustl.edu	37	11	26586728	26586728	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	11	26586728	26586728	C	T	SNP	MUC15	NM_001135091.1	human	genbank	58_37c	-1	validated	silent	c.759	p.T253	0.273	NULL	NULL	-	no_errors
MUC16	0	genome.wustl.edu	37	19	9000557	9000557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	9000557	9000557	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.40427	p.P13476L	0.001	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195506940	195506940	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	195506940	195506940	G	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.11127	p.H3709Q	0.197	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NS3BP	0	genome.wustl.edu	37	11	780321	780322	+	RNA	INS	-	-	TG	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	11	780321	780322	-	TG	INS	NS3BP	XR_041090.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.004:0.005	-	-	-	no_errors
PRB1	0	genome.wustl.edu	37	12	11506464	11506464	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	12	11506464	11506464	C	T	SNP	PRB1	NM_005039.3	human	genbank	58_37c	-1	reviewed	silent	c.573	p.Q191	0.000	NULL	NULL	-	pseudogene
PSG7	0	genome.wustl.edu	37	19	43430738	43430738	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	43430738	43430738	G	T	SNP	PSG7	NM_002783.2	human	genbank	58_37c	-1	reviewed	silent	c.840	p.L280	0.019	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	pseudogene
RGS16	0	genome.wustl.edu	37	1	182569531	182569531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	1	182569531	182569531	G	A	SNP	RGS16	NM_002928.3	human	genbank	58_37c	-1	reviewed	missense	c.505	p.P169S	1.000	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	-	no_errors
RPTN	0	genome.wustl.edu	37	1	152127447	152127447	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	1	152127447	152127447	C	T	SNP	RPTN	NM_001122965.1	human	genbank	58_37c	-1	validated	missense	c.2128	p.G710S	0.001	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
SAFB	0	genome.wustl.edu	37	19	5641894	5641894	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	19	5641894	5641894	G	A	SNP	SAFB	NM_002967.2	human	genbank	58_37c	+1	reviewed	silent	c.483	p.S161	0.947	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,superfamily_SSF68906	-	no_errors
SDHAP1	0	genome.wustl.edu	37	3	195702704	195702704	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	3	195702704	195702704	T	C	SNP	SDHAP1	NR_003264.2	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.221	-	-	-	pseudogene
SLC25A14	0	genome.wustl.edu	37	X	129474313	129474313	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	X	129474313	129474313	G	A	SNP	SLC25A14	NM_003951.2	human	genbank	58_37c	+1	reviewed	missense	c.61	p.V21M	1.000	NULL	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
SPRY3	0	genome.wustl.edu	37	X	155003723	155003723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	X	155003723	155003723	C	T	SNP	SPRY3	NM_005840.1	human	genbank	58_37c	+1	validated	missense	c.190	p.R64C	0.997	NULL	HMMPfam_Sprouty	-	no_errors
SYT9	0	genome.wustl.edu	37	11	7324487	7324487	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	11	7324487	7324487	C	T	SNP	SYT9	NM_175733.3	human	genbank	58_37c	+1	validated	silent	c.363	p.P121	1.000	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TTC23L	0	genome.wustl.edu	37	5	34863073	34863073	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	5	34863073	34863073	G	A	SNP	TTC23L	ENST00000508722	human	ensembl	58_37c	+1	known	missense	c.139	p.D47N	0.000	NULL	NULL	-	no_errors
UGT3A1	0	genome.wustl.edu	37	5	35954396	35954396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	5	35954396	35954396	C	T	SNP	UGT3A1	NM_152404.3	human	genbank	58_37c	-1	validated	missense	c.1480	p.G494R	0.960	HMMPfam_UDPGT	HMMPfam_UDPGT,PatternScan_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
XPNPEP1	0	genome.wustl.edu	37	10	111640657	111640657	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	10	111640657	111640657	G	A	SNP	XPNPEP1	NM_020383.3	human	genbank	58_37c	-1	reviewed	silent	c.945	p.I315	0.999	NULL	HMMPfam_Creatinase_N,HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase,PatternScan_PROLINE_PEPTIDASE	-	no_errors
ZSCAN29	0	genome.wustl.edu	37	15	43658586	43658586	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FJ-01A-11D-A13L-09	TCGA-BH-A1FJ-11B-42D-A188-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	dc62eafd-b5ad-42b4-9665-11ba6b22cff5	d6bd94cc-efd7-460d-aa7b-3e3d6a968e2a	15	43658586	43658586	C	T	SNP	ZSCAN29	NM_152455.3	human	genbank	58_37c	-1	validated	missense	c.944	p.G315D	1.000	NULL	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_MADF_DNA_bdg,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
