Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ATXN1	0	genome.wustl.edu	37	6	16327705	16327705	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	6	16327705	16327705	G	C	SNP	ATXN1	NM_000332.3	human	genbank	58_37c	-1	reviewed	missense	c.837	p.H279Q	1.000	NULL	HMMSmart_SM00536,HMMPfam_AXH,superfamily_AXH domain	-	no_errors
CES2	0	genome.wustl.edu	37	16	66974233	66974233	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	16	66974233	66974233	C	T	SNP	CES2	NM_003869.4	human	genbank	58_37c	+1	reviewed	missense	c.724	p.R242C	1.000	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1,superfamily_alpha/beta-Hydrolases	-	no_errors
DNAJC13	0	genome.wustl.edu	37	3	132166751	132166751	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	132166751	132166751	A	G	SNP	DNAJC13	NM_015268.3	human	genbank	58_37c	+1	validated	missense	c.304	p.T102A	1.000	NULL	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_ARM repeat	-	no_errors
ENSG00000198763	0	genome.wustl.edu	37	MT	5009	5010	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	MT	5009	5010	AT	-	DEL	ENSG00000198763	ENST00000361453	human	ensembl	58_37c	+1	known	frame_shift_del	c.540_541	p.Y181fs	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1,HMMPfam_NADH_dehy_S2_C	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
ENSG00000198786	0	genome.wustl.edu	37	MT	13246	13246	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	MT	13246	13246	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.910	p.F304L	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000198786	0	genome.wustl.edu	37	MT	13916	13916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	MT	13916	13916	G	A	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1580	p.G527E	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000210082	0	genome.wustl.edu	37	MT	2621	2621	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	MT	2621	2621	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000231520	0	genome.wustl.edu	37	10	42380256	42380256	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	10	42380256	42380256	T	C	SNP	ENSG00000231520	ENST00000429113	human	ensembl	58_37c	-1	known	silent	c.6	p.E2	0.000	NULL	NULL	-	no_stop_codon
ENSG00000242730	0	genome.wustl.edu	37	2	83046418	83046418	+	RNA	SNP	C	T	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	2	83046418	83046418	C	T	SNP	ENSG00000242730	ENST00000476480	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.988	-	-	-	pseudogene
EPPK1	0	genome.wustl.edu	37	8	144945136	144945136	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	8	144945136	144945136	G	A	SNP	EPPK1	NM_031308.1	human	genbank	58_37c	-1	validated	silent	c.2286	p.D762	0.975	HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	pseudogene
GDF2	0	genome.wustl.edu	37	10	48413719	48413719	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	10	48413719	48413719	C	A	SNP	GDF2	NM_016204.1	human	genbank	58_37c	-1	reviewed	missense	c.1149	p.K383N	0.999	HMMPfam_TGF_beta,HMMSmart_SM00204,superfamily_Cystine-knot cytokines	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	-	no_errors
LOC339742	0	genome.wustl.edu	37	2	133106844	133106845	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	2	133106844	133106845	-	C	INS	LOC339742	XM_929883.3	human	genbank	58_37c	+1	model	frame_shift_ins	c.10_11	p.I4fs	0.001:0.001	NULL	NULL	-	no_errors
LOC728698	0	genome.wustl.edu	37	12	53548009	53548009	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	12	53548009	53548009	T	C	SNP	LOC728698	XR_015801.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
MAPK6	0	genome.wustl.edu	37	15	52350913	52350913	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	15	52350913	52350913	G	C	SNP	MAPK6	NM_002748.3	human	genbank	58_37c	+1	reviewed	missense	c.784	p.V262L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MON2	0	genome.wustl.edu	37	12	62965209	62965209	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	12	62965209	62965209	C	G	SNP	MON2	NM_015026.2	human	genbank	58_37c	+1	validated	missense	c.4361	p.P1454R	1.000	superfamily_ARM-type_fold	HMMPfam_DUF1981,superfamily_ARM-type_fold	-	no_errors
MOV10	0	genome.wustl.edu	37	1	113231673	113231673	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	1	113231673	113231673	T	G	SNP	MOV10	NM_001130079.1	human	genbank	58_37c	+1	validated	missense	c.254	p.V85G	0.004	NULL	PatternScan_ER_TARGET,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MSR1	0	genome.wustl.edu	37	8	16035439	16035439	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	8	16035439	16035439	G	T	SNP	MSR1	NM_138715.2	human	genbank	58_37c	-1	reviewed	missense	c.59	p.S20Y	0.999	NULL	HMMPfam_SRCR,PatternScan_SRCR_1,HMMPfam_Macscav_rec,HMMPfam_Collagen,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
OFD1	0	genome.wustl.edu	37	X	13781897	13781897	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	X	13781897	13781897	G	T	SNP	OFD1	NM_003611.2	human	genbank	58_37c	+1	reviewed	missense	c.2522	p.G841V	0.002	PatternScan_ALDEHYDE_DEHYDR_GLU	HMMSmart_SM00667,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178922325	178922325	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	178922325	178922325	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1094	p.E365V	1.000	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLLP	0	genome.wustl.edu	37	16	57290919	57290921	+	In_Frame_Del	DEL	ATC	ATC	-	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	ATC	ATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	16	57290919	57290921	ATC	-	DEL	PLLP	NM_015993.2	human	genbank	58_37c	-1	validated	in_frame_del	c.455_453	p.M151in_frame_del	0.997:1.000:1.000	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
PLXNA1	0	genome.wustl.edu	37	3	126730837	126730837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	126730837	126730837	G	A	SNP	PLXNA1	NM_032242.3	human	genbank	58_37c	+1	validated	missense	c.2080	p.V694M	0.998	NULL	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors
POLA2	0	genome.wustl.edu	37	11	65064614	65064614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	11	65064614	65064614	G	A	SNP	POLA2	NM_002689.2	human	genbank	58_37c	+1	provisional	silent	c.1671	p.V557	1.000	NULL	HMMPfam_DNA_pol_E_B,HMMPfam_Pol_alpha_B_N	-	no_errors
PPIL4	0	genome.wustl.edu	37	6	149847870	149847870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	6	149847870	149847870	C	T	SNP	PPIL4	NM_139126.2	human	genbank	58_37c	-1	reviewed	missense	c.721	p.V241I	1.000	HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like,superfamily_RNA-binding domain RBD	-	no_errors
PPM1F	0	genome.wustl.edu	37	22	22277563	22277563	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	22	22277563	22277563	C	T	SNP	PPM1F	NM_014634.2	human	genbank	58_37c	-1	reviewed	missense	c.1267	p.G423R	0.000	NULL	PatternScan_PP2C,HMMSmart_PP2C_SIG,HMMSmart_PP2Cc,superfamily_PP2C-related,HMMPfam_PP2C	-	no_errors
PRICKLE3	0	genome.wustl.edu	37	X	49040116	49040117	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	X	49040116	49040117	GT	-	DEL	PRICKLE3	ENST00000417014	human	ensembl	58_37c	-1	known	frame_shift_del	c.383_382	p.T128fs	0.149:0.119	NULL	HMMPfam_PET	-	no_stop_codon
RB1	0	genome.wustl.edu	37	13	48934189	48934189	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	13	48934189	48934189	C	A	SNP	RB1	NM_000321.2	human	genbank	58_37c	+1	reviewed	nonsense	c.644	p.S215*	1.000	NULL	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C	-	no_errors
RFX4	0	genome.wustl.edu	37	12	107080750	107080750	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	12	107080750	107080750	A	C	SNP	RFX4	NM_213594.1	human	genbank	58_37c	+1	reviewed	missense	c.466	p.T156P	1.000	NULL	HMMPfam_RFX_DNA_binding,superfamily_SSF46785	-	no_errors
RPS6KB2	0	genome.wustl.edu	37	11	67202569	67202569	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	11	67202569	67202569	G	A	SNP	RPS6KB2	NM_003952.2	human	genbank	58_37c	+1	reviewed	missense	c.1378	p.A460T	0.779	NULL	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
RUNX1	0	genome.wustl.edu	37	21	36206776	36206777	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	21	36206776	36206777	-	G	INS	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.736_735	p.T245fs	1.000:1.000	NULL	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors
SMG5	0	genome.wustl.edu	37	1	156237972	156237972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	1	156237972	156237972	C	T	SNP	SMG5	NM_015327.2	human	genbank	58_37c	-1	validated	missense	c.842	p.C281Y	1.000	NULL	HMMSmart_PINc,HMMPfam_EST1	-	no_errors
SYNPR	0	genome.wustl.edu	37	3	63594947	63594947	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	3	63594947	63594947	C	T	SNP	SYNPR	NM_001130003.1	human	genbank	58_37c	+1	validated	silent	c.555	p.C185	1.000	HMMPfam_MARVEL	PatternScan_SYNAPTOP,HMMPfam_MARVEL	-	no_errors
TAS2R38	0	genome.wustl.edu	37	7	141673070	141673070	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	7	141673070	141673070	G	T	SNP	TAS2R38	NM_176817.4	human	genbank	58_37c	-1	reviewed	silent	c.420	p.I140	0.000	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	17	7578212	7578212	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.637	p.R213*	0.893	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
UGT2B28	0	genome.wustl.edu	37	4	70276711	70276711	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	4	70276711	70276711	C	T	SNP	UGT2B28	ENST00000436035	human	ensembl	58_37c	+1	known	missense	c.143	p.P48L	1.000	HMMPfam_UDPGT,superfamily_SSF53756	HMMPfam_UDPGT,superfamily_SSF53756	-	no_start_codon:no_stop_codon
USH2A	0	genome.wustl.edu	37	1	216219877	216219877	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	1	216219877	216219877	G	T	SNP	USH2A	NM_206933.2	human	genbank	58_37c	-1	reviewed	missense	c.6221	p.S2074Y	0.000	HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
ZNF224	0	genome.wustl.edu	37	19	44612139	44612139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A202-01A-11D-A14K-09	TCGA-BH-A202-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e6feb69a-8827-4d43-94aa-036cf5150549	4cdd2f93-e0d1-4420-bf4d-ba004cc0599c	19	44612139	44612139	C	T	SNP	ZNF224	NM_013398.2	human	genbank	58_37c	+1	validated	missense	c.1826	p.S609L	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
