Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ACAP3	116983	genome.wustl.edu	37	1	1239505	1239505	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000354980	-1	known	p.W38*	1.000	29	0%	190	21.1%	3	66.6%	-	-	-	NULL
TNFRSF14	8764	genome.wustl.edu	37	1	2489215	2489215	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003820.2	+1	reviewed	p.P40	0.000	16	0%	59	20.3%	69	26%	-	-	-	NULL
MMEL1	79258	genome.wustl.edu	37	1	2528098	2528098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_033467.3	-1	reviewed	p.R426C	0.998	20	0%	92	22.8%	1	100%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
NPHP4	261734	genome.wustl.edu	37	1	5927907	5927907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015102.2	-1	reviewed	p.T1122N	0.791	9	0.000	53	0.170	2	0%	benign(0.001)	tolerated(0.95)	-	NULL
PTCHD2	57540	genome.wustl.edu	37	1	11562878	11562878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_020780.1	+1	validated	p.R414C	1.000	23	0%	127	20.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Patched
PRAMEF1	65121	genome.wustl.edu	37	1	12853534	12853534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_023013.1	+1	provisional	p.T53M	0.000	62	0%	155	20.6%	0	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	superfamily_SSF52047
ECE1	1889	genome.wustl.edu	37	1	21599298	21599298	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001397.2	-1	reviewed	p.A129	1.000	44	0%	249	22.5%	4	50%	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
ALPL	249	genome.wustl.edu	37	1	21890570	21890570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000478.4	+1	reviewed	p.N170S	1.000	22	0%	67	13.4%	8	37.5%	benign(0.146)	tolerated(0.08)	neutral(0.312)	HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,superfamily_Alkaline_phosphatase_core
IQCC	55721	genome.wustl.edu	37	1	32673225	32673225	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_018134.2	+1	validated	p.L315	0.107	16	0%	33	27.3%	1	100%	-	-	-	NULL
HEYL	26508	genome.wustl.edu	37	1	40092733	40092733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014571.3	-1	reviewed	p.V145I	0.465	18	0%	38	18.4%	1	0%	benign(0.078)	tolerated(0.36)	neutral(0.026)	HMMPfam_Hairy_orange,HMMSmart_ORANGE
IPO13	9670	genome.wustl.edu	37	1	44423121	44423121	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014652.3	+1	reviewed	p.I480	0.315	38	0%	93	24.7%	7	28.5%	-	-	-	superfamily_ARM-type_fold
TXNDC12	51060	genome.wustl.edu	37	1	52520711	52520711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015913.2	-1	provisional	p.L20I	0.927	36	0%	64	31.2%	23	39.1%	benign(0.002)	tolerated(0.4)	neutral(0.016)	NULL
SCP2	6342	genome.wustl.edu	37	1	53420455	53420455	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002979.3	+1	reviewed	p.S125	0.265	533	0%	284	22.9%	2	0%	-	-	-	HMMPfam_Thiolase_N,superfamily_Thiolase-like
PODN	127435	genome.wustl.edu	37	1	53547786	53547787	+	In_Frame_Ins	INS	-	-	AGG	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_153703.3	+1	validated	p.651in_frame_insE	0.044:0.051	-	-	-	-	-	-	-	-	-	superfamily_SSF52047
LOC100288209	100288209	genome.wustl.edu	37	1	55317896	55317896	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	XM_002342084.1	+1	model	p.A42	0.000	16	0%	96	19.8%	9	77.7%	-	-	-	NULL
PCSK9	255738	genome.wustl.edu	37	1	55505552	55505553	+	In_Frame_Ins	INS	-	-	CTG	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_174936.2	+1	reviewed	p.18in_frame_insL	0.042:0.086	-	-	-	-	-	-	-	-	-	NULL
FGGY	55277	genome.wustl.edu	37	1	60073504	60073504	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001113411.1	+1	validated	p.G311	0.002	98	0%	219	27.4%	3	0%	-	-	-	superfamily_SSF53067
MCOLN3	55283	genome.wustl.edu	37	1	85487847	85487847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_018298.9	-1	validated	p.L409P	0.990	73	0%	62	24.2%	2	50%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Ion_trans
TGFBR3	7049	genome.wustl.edu	37	1	92177833	92177833	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003243.3	-1	validated	p.T711	0.997	41	0%	56	12.5%	0	-	-	-	-	HMMPfam_Zona_pellucida,HMMSmart_ZP
PPM1J	333926	genome.wustl.edu	37	1	113255523	113255523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005167.5	-1	reviewed	p.P191L	0.993	34	0%	160	28.1%	0	-	benign(0.031)	tolerated(0.07)	neutral(0.321)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
WDR3	10885	genome.wustl.edu	37	1	118476076	118476076	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006784.2	+1	reviewed	p.E45G	1.000	63	0%	181	19.9%	1	100%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_WD40 repeat-like
WARS2	10352	genome.wustl.edu	37	1	119575637	119575637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015836.3	-1	reviewed	p.D327G	0.997	59	0%	144	20.1%	15	53.3%	benign(0.123)	deleterious(0.01)	neutral(0.416)	superfamily_Nucleotidylyl transferase
PDZK1	5174	genome.wustl.edu	37	1	145761247	145761247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002614.3	+1	provisional	p.A354T	0.002	227	0%	49	10.2%	2	0%	possibly_damaging(0.948)	tolerated(0.39)	neutral(0.407)	NULL
BOLA1	51027	genome.wustl.edu	37	1	149871866	149871866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_016074.3	+1	validated	p.R85Q	1.000	9	0.000	24	0.208	58	48.2%	possibly_damaging(0.899)	deleterious(0.04)	deleterious(0.705)	HMMPfam_BolA,superfamily_BolA-like
HRNR	388697	genome.wustl.edu	37	1	152192752	152192752	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001009931.1	-1	validated	p.S451	0.000	45	0%	188	19.1%	0	-	-	-	-	NULL
INTS3	65123	genome.wustl.edu	37	1	153744347	153744347	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_023015.3	+1	validated	p.L876	1.000	17	0%	55	20%	68	27.9%	-	-	-	NULL
RUSC1	23623	genome.wustl.edu	37	1	155295665	155295665	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001105203.1	+1	validated	p.L609	1.000	82	0%	378	12.2%	9	22.2%	-	-	-	HMMPfam_RUN,HMMSmart_SM00593
GON4L	54856	genome.wustl.edu	37	1	155721809	155721809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001037533.1	-1	validated	p.V2138M	0.974	43	0%	163	19%	22	31.8%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	superfamily_Homeodomain-like
CCT3	7203	genome.wustl.edu	37	1	156279018	156279018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005998.3	-1	reviewed	p.G537V	0.182	37	0%	106	27.4%	966	44.8%	benign(0)	deleterious(0.04)	neutral(0.349)	NULL
CD5L	922	genome.wustl.edu	37	1	157804460	157804463	+	Frame_Shift_Del	DEL	TCCA	TCCA	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	TCCA	TCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005894.2	-1	validated	p.V151fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
KIRREL	55243	genome.wustl.edu	37	1	158064790	158064790	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_018240.5	+1	validated	p.R718	1.000	11	0%	59	22%	2	0%	-	-	-	NULL
NHLH1	4807	genome.wustl.edu	37	1	160340717	160340717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005598.3	+1	validated	p.R66C	1.000	11	0%	26	26.9%	1	0%	unknown(0)	deleterious(0)	-	superfamily_HLH helix-loop-helix DNA-binding domain
APOA2	336	genome.wustl.edu	37	1	161192205	161192205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001643.1	-1	reviewed	p.A98D	0.001	51	2%	110	11.8%	0	-	possibly_damaging(0.64)	deleterious(0)	deleterious(0.668)	HMMPfam_ApoA-II
SELE	6401	genome.wustl.edu	37	1	169695871	169695871	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000450.2	-1	reviewed	p.L575fs	0.996	-	-	-	-	-	-	-	-	-	NULL
TNR	7143	genome.wustl.edu	37	1	175365861	175365861	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000422274	-1	known	p.G78R	0.573	17	0%	51	17.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CACNA1S	779	genome.wustl.edu	37	1	201038598	201038598	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000069.2	-1	reviewed	e18+2	1.000	34	0%	87	20.7%	0	-	-	-	-	-
SLC45A3	85414	genome.wustl.edu	37	1	205632218	205632253	+	In_Frame_Del	DEL	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC	-	rs72434280	byCluster;by1000genomes	TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC	GCCGACAGCCCTTCTGCTGGCTCGGTGGGGCCCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_033102.2	-1	validated	p.LGPTEPAEGLSA223in_frame_del	0.000:0.025:0.000:0.007:0.001:0.014:0.046:0.062:0.078:0.967:0.989:0.986:0.991:0.960:0.000:0.000:0.002:0.000:0.974:0.965:0.960:0.949:0.805:0.001:0.007:0.000:0.000:0.364:0.280:0.272:0.996:1.000:0.999:0.957:0.896:0.000	-	-	-	-	-	-	-	-	-	superfamily_MFS general substrate transporter
IARS2	55699	genome.wustl.edu	37	1	220316370	220316370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_018060.3	+1	validated	p.A882V	0.997	152	0%	273	20.5%	58	48.2%	benign(0.007)	tolerated(0.67)	neutral(0.003)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1
CAPN8	388743	genome.wustl.edu	37	1	223716473	223716473	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001143962.1	-1	validated	p.A597	1.000	67	0%	83	21.7%	2	50%	-	-	-	superfamily_EF-hand
CDC42BPA	8476	genome.wustl.edu	37	1	227307583	227307583	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003607.3	-1	reviewed	p.L523	0.979	655	0%	128	21.1%	0	-	-	-	-	NULL
OBSCN	84033	genome.wustl.edu	37	1	228466442	228466442	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001098623.1	+1	reviewed	p.K2304	1.000	15	0%	56	17.9%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PGBD5	79605	genome.wustl.edu	37	1	230459240	230459240	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024554.3	-1	reviewed	p.S532	1.000	59	0%	161	24.2%	1	0%	-	-	-	NULL
TPO	7173	genome.wustl.edu	37	2	1491700	1491700	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000547.5	+1	reviewed	p.N569H	0.000	15	0%	84	15.5%	0	-	probably_damaging(0.99)	tolerated(1)	neutral(0.442)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
KRTCAP3	200634	genome.wustl.edu	37	2	27666007	27666009	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_173853.3	+1	validated	p.L115in_frame_del	1.000:1.000:0.987	-	-	-	-	-	-	-	-	-	NULL
DHX57	90957	genome.wustl.edu	37	2	39088525	39088525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_198963.1	-1	provisional	p.L343F	1.000	196	0%	50	28%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_RWD
THADA	63892	genome.wustl.edu	37	2	43712461	43712461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001083953.1	-1	validated	p.R1250G	1.000	244	0%	83	22.9%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PAPOLG	64895	genome.wustl.edu	37	2	61014131	61014131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_022894.2	+1	reviewed	p.R406W	1.000	565	0%	222	18%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAP_RNA-bind,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain
KANSL3	55683	genome.wustl.edu	37	2	97297103	97297103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001115016.1	-1	validated	p.R111M	1.000	22	0%	73	19.2%	1	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
C2orf55	343990	genome.wustl.edu	37	2	99448962	99448962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_207362.2	-1	validated	p.C130F	1.000	15	0%	89	20.2%	1	0%	benign(0.032)	tolerated(0.05)	neutral(0.347)	NULL
MAP4K4	9448	genome.wustl.edu	37	2	102472563	102472563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_145686.2	+1	reviewed	p.R453Q	1.000	176	0%	233	17.2%	11	27.2%	unknown(0)	tolerated(0.47)	-	NULL
STEAP3	55240	genome.wustl.edu	37	2	120005522	120005522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_182915.2	+1	validated	p.V264M	0.967	8	0.000	46	0.217	1	100%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
PROC	5624	genome.wustl.edu	37	2	128183782	128183782	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000312.3	+1	reviewed	p.R219	0.000	41	0%	95	20%	7	57.1%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
POTEE	445582	genome.wustl.edu	37	2	131984493	131984493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001083538.1	+1	validated	p.R303I	0.001	747	0%	234	14.1%	0	-	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	HMMPfam_Ank,superfamily_Ankyrin repeat
NCKAP5	344148	genome.wustl.edu	37	2	133542212	133542212	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_207363.2	-1	validated	p.A724	0.575	43	0%	83	16.9%	0	-	-	-	-	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135920420	135920423	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_012233.2	+1	reviewed	p.E830fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SPOPL	339745	genome.wustl.edu	37	2	139322400	139322400	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001001664.2	+1	validated	p.Q320H	1.000	149	0%	183	26.2%	0	-	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
TTC21B	79809	genome.wustl.edu	37	2	166758318	166758318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024753.3	-1	validated	p.A891T	1.000	59	0%	70	18.6%	2	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
LRP2	4036	genome.wustl.edu	37	2	170103917	170103917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004525.2	-1	reviewed	p.L960S	1.000	86	0%	216	17.6%	0	-	benign(0.122)	deleterious(0)	neutral(0.455)	superfamily_SSF63825
SSB	6741	genome.wustl.edu	37	2	170662024	170662024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003142.3	+1	provisional	p.L36P	1.000	232	0%	190	22.1%	61	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"
KCTD18	130535	genome.wustl.edu	37	2	201371645	201371645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_152387.2	-1	validated	p.R32H	1.000	30	0%	89	12.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_K_tetra,superfamily_POZ domain
CASP8	841	genome.wustl.edu	37	2	202137500	202137500	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001080125.1	+1	reviewed	e4+1	1.000	199	0%	93	15.1%	2	50%	-	-	-	-
CPS1	1373	genome.wustl.edu	37	2	211464172	211464172	+	Missense_Mutation	SNP	C	C	T	rs187860166	by1000genomes	TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001122633.1	+1	reviewed	p.A485V	1.000	70	0%	22	22.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain
ABCA12	26154	genome.wustl.edu	37	2	215848478	215848478	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_173076.2	-1	reviewed	p.Q1425	0.999	138	0%	133	21.1%	0	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
USP37	57695	genome.wustl.edu	37	2	219394710	219394710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_020935.2	-1	validated	p.E278K	1.000	157	0%	176	27.8%	2	0%	benign(0.005)	tolerated(0.16)	neutral(0.059)	NULL
SLC23A3	151295	genome.wustl.edu	37	2	220033006	220033006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001144890.1	-1	validated	p.L245M	1.000	27	0%	66	30.3%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Xan_ur_permease
ANKZF1	55139	genome.wustl.edu	37	2	220099777	220099777	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001042410.1	+1	validated	p.P478	0.008	26	0%	97	19.6%	38	39.4%	-	-	-	NULL
CCDC140	151278	genome.wustl.edu	37	2	223168656	223168656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_153038.1	+1	validated	p.A12V	0.000	38	0%	90	37.8%	0	-	unknown(0)	-	-	NULL
SPHKAP	80309	genome.wustl.edu	37	2	228884564	228884564	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001142644.1	-1	validated	p.Q336*	0.025	125	0%	184	15.2%	0	-	-	-	-	NULL
HDAC4	9759	genome.wustl.edu	37	2	240011757	240011757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006037.3	-1	reviewed	p.A774V	1.000	29	0%	67	23.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
KIF1A	547	genome.wustl.edu	37	2	241697827	241697827	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004321.4	-1	reviewed	p.T835	0.092	27	0%	70	20%	0	-	-	-	-	NULL
ITPR1	3708	genome.wustl.edu	37	3	4722338	4722338	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001099952.2	+1	reviewed	p.S1014	0.166	182	0%	106	19.8%	0	-	-	-	-	NULL
CIDEC	63924	genome.wustl.edu	37	3	9911696	9911696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_022094.2	-1	provisional	p.R142C	0.707	40	0%	149	21.5%	0	-	benign(0.003)	tolerated(0.16)	neutral(0.059)	NULL
IL17RC	84818	genome.wustl.edu	37	3	9975018	9975018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_153461.2	+1	reviewed	p.D706G	0.916	8	0.000	38	0.263	45	35.5%	benign(0.418)	deleterious(0.02)	deleterious(0.518)	HMMPfam_SEFIR
CRELD1	78987	genome.wustl.edu	37	3	9979791	9979791	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001031717.3	+1	reviewed	e4+1	0.998	7	0.000	66	0.197	0	-	-	-	-	-
ANKRD28	23243	genome.wustl.edu	37	3	15807800	15807800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015199.2	-1	provisional	p.P44L	1.000	90	0%	105	19%	2	100%	probably_damaging(0.96)	tolerated(0.18)	neutral(0.459)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
SATB1	6304	genome.wustl.edu	37	3	18391137	18391137	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001131010.1	-1	validated	p.Q606R	0.993	27	0%	48	25%	6	0%	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
TOP2B	7155	genome.wustl.edu	37	3	25685238	25685238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001068.2	-1	reviewed	p.C88Y	1.000	188	0%	104	10.6%	9	33.3%	benign(0.001)	tolerated(1)	-	superfamily_ATP_bd_ATPase
SLC22A13	9390	genome.wustl.edu	37	3	38317840	38317840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004256.3	+1	reviewed	p.T434A	0.809	32	0%	157	21.7%	0	-	benign(0.33)	tolerated(0.14)	neutral(0.353)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ZBTB47	92999	genome.wustl.edu	37	3	42705776	42705776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_145166.3	+1	validated	p.R268W	1.000	16	0%	38	21.1%	4	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MAP4	4134	genome.wustl.edu	37	3	47963294	47963294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002375.4	-1	reviewed	p.I164V	0.006	88	0%	114	21.1%	4	50%	unknown(0)	tolerated(0.25)	-	NULL
CCDC51	79714	genome.wustl.edu	37	3	48475118	48475118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024661.3	-1	validated	p.Q159R	1.000	9	0.000	78	0.244	8	50%	probably_damaging(0.971)	tolerated(0.14)	deleterious(0.662)	NULL
ADAMTS9	56999	genome.wustl.edu	37	3	64633620	64633620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_182920.1	-1	reviewed	p.G569V	1.000	43	0%	70	10%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
LRIG1	26018	genome.wustl.edu	37	3	66434449	66434449	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015541.2	-1	validated	p.G679	0.999	23	0%	62	22.6%	10	20%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
GCET2	257144	genome.wustl.edu	37	3	111846902	111846902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_152785.3	-1	reviewed	p.W35C	0.786	115	0%	68	14.7%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
BOC	91653	genome.wustl.edu	37	3	112989770	112989770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_033254.2	+1	validated	p.S216G	0.973	34	0%	94	22.3%	2	0%	benign(0)	tolerated(0.56)	neutral(0.006)	HMMSmart_SM00409,HMMPfam_V-set
PARP15	165631	genome.wustl.edu	37	3	122340369	122340369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001113523.1	+1	validated	p.G381E	0.000	128	0%	104	19.2%	6	0%	possibly_damaging(0.561)	tolerated(0.67)	neutral(0.194)	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
IL12A	3592	genome.wustl.edu	37	3	159711370	159711370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000882.2	+1	reviewed	p.A146T	0.038	215	0%	211	20.4%	1	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	HMMPfam_IL12,superfamily_4_helix_cytokine
DVL3	1857	genome.wustl.edu	37	3	183888139	183888139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004423.3	+1	reviewed	p.S583G	1.000	13	0%	22	27.3%	41	41.4%	unknown(0)	tolerated(0.6)	-	NULL
CLCN2	1181	genome.wustl.edu	37	3	184072070	184072070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004366.4	-1	reviewed	p.T514A	1.000	12	0%	43	23.3%	4	50%	probably_damaging(0.986)	tolerated(0.05)	deleterious(0.780)	HMMPfam_Voltage_CLC,superfamily_Clc chloride channel
EHHADH	1962	genome.wustl.edu	37	3	184966189	184966189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000440662	-1	known	p.L64P	0.003	246	0%	252	20.6%	0	-	benign(0.083)	-	-	NULL
TPRG1	285386	genome.wustl.edu	37	3	189028213	189028213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_198485.3	+1	validated	p.P173L	0.000	83	0%	17	29.4%	2	50%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
ENSG00000163959	0	genome.wustl.edu	37	3	195954469	195954469	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000428985	+1	known	p.P87	0.000	34	0%	188	25.5%	0	-	unknown(0)	-	-	NULL
KIAA1530	57654	genome.wustl.edu	37	4	1377698	1377698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_020894.2	+1	validated	p.R669H	1.000	17	0%	70	28.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGFR3	2261	genome.wustl.edu	37	4	1806634	1806634	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000142.4	+1	reviewed	p.T450	0.942	34	0%	34	23.5%	4	25%	-	-	-	NULL
SH3BP2	6452	genome.wustl.edu	37	4	2831395	2831395	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001122681.1	+1	reviewed	p.S254	0.001	9	0.000	45	0.244	30	10%	-	-	-	NULL
ADD1	118	genome.wustl.edu	37	4	2896374	2896374	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014189.2	+1	reviewed	p.A219	0.752	55	0%	94	16%	6	50%	-	-	-	HMMPfam_Aldolase_II,superfamily_Aldolase_II_N
CCDC96	257236	genome.wustl.edu	37	4	7043112	7043112	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_153376.2	-1	validated	p.T518	0.000	29	0%	90	18.9%	49	42.8%	-	-	-	NULL
PPARGC1A	10891	genome.wustl.edu	37	4	23830042	23830042	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_013261.3	-1	reviewed	p.S246	0.207	215	0%	496	20.4%	0	-	-	-	-	NULL
KLF3	51274	genome.wustl.edu	37	4	38696452	38696452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_016531.5	+1	validated	p.R261G	1.000	51	0%	85	23.5%	13	53.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LRRC66	339977	genome.wustl.edu	37	4	52861498	52861498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001024611.1	-1	provisional	p.A564T	0.000	41	0%	38	28.9%	0	-	benign(0)	tolerated(1)	-	NULL
SPATA18	132671	genome.wustl.edu	37	4	52951107	52951107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_145263.2	+1	provisional	p.R502H	0.988	96	0%	76	21.1%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
NOA1	84273	genome.wustl.edu	37	4	57829706	57829706	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032313.2	-1	provisional	p.Q669	0.266	48	0%	70	18.6%	43	55.8%	-	-	-	NULL
UGT2A2	574537	genome.wustl.edu	37	4	70504751	70504751	+	Missense_Mutation	SNP	G	G	A	rs185641136	by1000genomes	TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001105677.1	-1	inferred	p.P195L	0.998	52	1.9%	64	28.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
FAM190A	401145	genome.wustl.edu	37	4	92520068	92520068	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001145065.1	+1	validated	p.Q855*	0.978	55	0%	35	11.4%	0	-	-	-	-	NULL
ANXA5	308	genome.wustl.edu	37	4	122604611	122604611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001154.3	-1	reviewed	p.S71P	1.000	267	0%	129	30.2%	125	22.4%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
TBC1D9	23158	genome.wustl.edu	37	4	141598053	141598053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015130.2	-1	validated	p.R352C	1.000	72	0%	55	14.5%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GRAM,HMMSmart_SM00568
NR3C2	4306	genome.wustl.edu	37	4	149356987	149356987	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000901.4	-1	reviewed	p.S342	0.997	61	0%	90	15.6%	0	-	-	-	-	NULL
DDX60	55601	genome.wustl.edu	37	4	169229244	169229244	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_017631.5	-1	validated	p.G59	0.770	152	0%	41	14.6%	1	100%	-	-	-	NULL
SDHA	6389	genome.wustl.edu	37	5	225597	225597	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004168.2	+1	reviewed	p.T126P	1.000	43	0%	124	22.6%	32	40.6%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain
SDHA	6389	genome.wustl.edu	37	5	228364	228364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004168.2	+1	reviewed	p.G229E	1.000	43	0%	181	14.4%	76	38.1%	benign(0.354)	deleterious(0.03)	deleterious(0.476)	HMMPfam_FAD_binding_2,superfamily_FAD/NAD(P)-binding domain
SLC12A7	10723	genome.wustl.edu	37	5	1064248	1064248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006598.2	-1	validated	p.H853Y	1.000	7	0.000	40	0.225	14	28.5%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
SLC6A19	340024	genome.wustl.edu	37	5	1208929	1208929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001003841.2	+1	reviewed	p.A91T	1.000	7	0.000	44	0.205	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
PDZD2	23037	genome.wustl.edu	37	5	32059363	32059363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_178140.2	+1	reviewed	p.G740D	1.000	26	0%	73	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP
C1QTNF3	114899	genome.wustl.edu	37	5	34043168	34043168	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_181435.4	-1	validated	p.L21	1.000	79	0%	50	10%	0	-	-	-	-	NULL
DNAJC21	134218	genome.wustl.edu	37	5	34954033	34954033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_194283.3	+1	validated	p.V499A	0.998	403	0%	166	18.7%	56	41%	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41058239	41058239	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_173489.4	-1	validated	p.G228*	0.364	58	0%	72	18.1%	0	-	-	-	-	superfamily_ARM repeat
MRPS30	10884	genome.wustl.edu	37	5	44811143	44811143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_016640.3	+1	reviewed	p.R212C	0.986	98	0%	153	19%	17	35.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PDCD9
MAST4	375449	genome.wustl.edu	37	5	66448520	66448520	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000443808	+1	known	p.G174R	0.141	33	0%	98	23.5%	0	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589585	67589599	+	In_Frame_Del	DEL	CATGAATATAACACT	CATGAATATAACACT	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	CATGAATATAACACT	CATGAATATAACACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_181523.1	+1	reviewed	p.HEYNT450in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NSA2	10412	genome.wustl.edu	37	5	74065096	74065096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014886.3	+1	provisional	p.Q83H	0.996	118	0%	113	28.3%	142	39.4%	benign(0.051)	deleterious(0.01)	neutral(0.409)	HMMPfam_Ribosomal_S8e
F2R	2149	genome.wustl.edu	37	5	76028342	76028342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001992.3	+1	reviewed	p.S98G	1.000	118	0%	126	29.4%	2	0%	benign(0.002)	tolerated(0.79)	neutral(0.001)	superfamily_SSF81321
SLC27A6	28965	genome.wustl.edu	37	5	128320959	128320959	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001017372.1	+1	reviewed	p.V205	0.335	110	0%	68	26.5%	0	-	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
ACSL6	23305	genome.wustl.edu	37	5	131290057	131290057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001009185.1	-1	validated	p.A680V	1.000	107	0.9%	148	20.9%	0	-	possibly_damaging(0.501)	tolerated(0.11)	neutral(0.439)	superfamily_SSF56801
DNAJC18	202052	genome.wustl.edu	37	5	138761891	138761891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_152686.2	-1	provisional	p.N177D	1.000	80	0%	121	14.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DnaJ_N
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139892987	139892987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_020690.4	+1	reviewed	p.V1414M	1.000	115	0%	64	23.4%	20	30%	possibly_damaging(0.449)	deleterious(0.03)	deleterious(0.511)	NULL
PCDHA12	56137	genome.wustl.edu	37	5	140256546	140256546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_018903.2	+1	reviewed	p.R497W	1.000	22	0%	80	23.7%	1	100%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140768587	140768587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003736.2	+1	reviewed	p.E379G	0.739	55	0%	138	20.3%	0	-	possibly_damaging(0.813)	tolerated(0.07)	deleterious(0.626)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CSNK1A1	1452	genome.wustl.edu	37	5	148899903	148899903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001025105.1	-1	validated	p.D136Y	1.000	437	0%	95	16.8%	15	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
GM2A	2760	genome.wustl.edu	37	5	150646961	150646961	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000405.4	+1	reviewed	p.S177	0.000	28	0%	81	24.7%	25	16%	-	-	-	HMMSmart_ML,superfamily_SSF63707
HMP19	51617	genome.wustl.edu	37	5	173531229	173531229	+	Splice_Site	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015980.3	+1	provisional	e3-2	1.000	43	0%	278	19.8%	0	-	-	-	-	-
UNC5A	90249	genome.wustl.edu	37	5	176305244	176305244	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_133369.2	+1	validated	e12-1	1.000	8	0.000	39	0.179	1	100%	-	-	-	-
NSD1	64324	genome.wustl.edu	37	5	176696722	176696722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_022455.4	+1	reviewed	p.H1808R	1.000	86	1.2%	189	18%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
ZNF187	7741	genome.wustl.edu	37	6	28244310	28244310	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_152736.4	+1	validated	p.Q158*	0.954	71	0%	156	17.3%	4	25%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MICA	100507436	genome.wustl.edu	37	6	31380196	31380196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000376219	+1	known	p.V329A	0.000	61	0%	342	21.1%	31	25.8%	-	-	-	NULL
IP6K3	117283	genome.wustl.edu	37	6	33703175	33703175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001142883.1	-1	reviewed	p.G27W	1.000	5	0.000	45	0.400	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SAICAR synthase-like
MDGA1	266727	genome.wustl.edu	37	6	37626169	37626169	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_153487.3	-1	validated	p.S78	0.993	10	0%	60	16.7%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
UBR2	23304	genome.wustl.edu	37	6	42643898	42643898	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015255.2	+1	reviewed	p.H1452	1.000	57	0%	188	23.4%	20	45%	-	-	-	NULL
PTK7	5754	genome.wustl.edu	37	6	43126671	43126671	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000489707	+1	known	p.C241Y	1.000	21	0%	86	24.4%	59	33.8%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
TDRD6	221400	genome.wustl.edu	37	6	46657584	46657584	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001010870.2	+1	validated	p.G573	0.951	37	0%	86	26.7%	0	-	-	-	-	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748
TFAP2D	83741	genome.wustl.edu	37	6	50683083	50683083	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_172238.3	+1	validated	p.S98	0.999	83	0%	297	19.9%	0	-	-	-	-	NULL
FAM83B	222584	genome.wustl.edu	37	6	54735158	54735158	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001010872.1	+1	validated	p.H38	0.233	64	0%	34	17.6%	0	-	-	-	-	HMMPfam_DUF1669
GFRAL	389400	genome.wustl.edu	37	6	55198608	55198608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_207410.2	+1	validated	p.R61K	0.003	146	0%	61	13.1%	0	-	benign(0)	tolerated(1)	-	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73751742	73751742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_019842.3	+1	reviewed	p.W191C	1.000	149	0%	306	19.3%	0	-	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MYO6	4646	genome.wustl.edu	37	6	76570788	76570788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004999.3	+1	reviewed	p.Y508H	1.000	536	0%	180	17.2%	3	100%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ME1	4199	genome.wustl.edu	37	6	83938553	83938553	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002395.4	-1	reviewed	p.A375V	0.339	429	0%	223	11.7%	1	0%	benign(0.001)	tolerated(0.82)	neutral(0.001)	HMMPfam_Malic_M,superfamily_NAD(P)-bd
TSPYL4	23270	genome.wustl.edu	37	6	116574038	116574038	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_021648.4	-1	validated	p.W378*	1.000	78	0%	178	19.1%	1	100%	-	-	-	HMMPfam_NAP
RFX6	222546	genome.wustl.edu	37	6	117250061	117250061	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_173560.2	+1	validated	p.D846	0.830	44	0%	48	22.9%	0	-	-	-	-	NULL
RSPO3	84870	genome.wustl.edu	37	6	127471696	127471696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032784.3	+1	reviewed	p.T139A	0.655	115	0%	26	15.4%	2	0%	possibly_damaging(0.902)	deleterious(0.04)	deleterious(0.706)	superfamily_Growth factor receptor domain
UTRN	7402	genome.wustl.edu	37	6	144809927	144809927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_007124.2	+1	reviewed	p.L1364P	0.995	49	0%	60	18.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBXO30	84085	genome.wustl.edu	37	6	146126379	146126379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032145.4	-1	reviewed	p.S388L	0.983	108	0%	35	11.4%	2	0%	benign(0.224)	tolerated(0.3)	neutral(0.051)	NULL
ESR1	2099	genome.wustl.edu	37	6	152163850	152163850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000125.3	+1	reviewed	p.Y191H	1.000	49	0%	37	16.2%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SYNE1	23345	genome.wustl.edu	37	6	152497539	152497539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_182961.2	-1	reviewed	p.I7873V	1.000	124	0%	149	15.4%	1	0%	benign(0.003)	tolerated(0.26)	neutral(0.034)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CCR6	1235	genome.wustl.edu	37	6	167550645	167550645	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004367.5	+1	reviewed	p.C309	1.000	72	0%	184	13.6%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
HEATR2	54919	genome.wustl.edu	37	7	796418	796418	+	Splice_Site	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_017802.3	+1	validated	e6-1	1.000	6	0.000	34	0.294	0	-	-	-	-	-
INTS1	26173	genome.wustl.edu	37	7	1538143	1538143	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001080453.2	-1	validated	p.L444	1.000	16	0%	99	18.2%	0	-	-	-	-	NULL
USP42	84132	genome.wustl.edu	37	7	6175546	6175546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032172.2	+1	validated	p.V173I	1.000	175	0%	215	15.8%	2	0%	possibly_damaging(0.951)	tolerated(0.17)	neutral(0.453)	HMMPfam_UCH,superfamily_SSF54001
USP42	84132	genome.wustl.edu	37	7	6187412	6187412	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032172.2	+1	validated	p.T425	0.968	42	0%	115	22.6%	1	0%	-	-	-	NULL
KBTBD2	25948	genome.wustl.edu	37	7	32919168	32919168	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015483.2	-1	validated	p.L17	1.000	85	0%	55	12.7%	3	66.6%	-	-	-	superfamily_POZ domain
PKD1L1	168507	genome.wustl.edu	37	7	47876561	47876561	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_138295.2	-1	reviewed	p.Y1967*	0.003	32	0%	70	24.3%	0	-	-	-	-	NULL
FIGNL1	63979	genome.wustl.edu	37	7	50514909	50514909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001042762.1	-1	validated	p.C26Y	0.996	55	0%	79	13.9%	0	-	possibly_damaging(0.902)	tolerated(0.44)	neutral(0.369)	NULL
ABCB1	5243	genome.wustl.edu	37	7	87183163	87183163	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000927.3	-1	reviewed	p.L305	0.928	609	0%	268	23.1%	0	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ABCB1	5243	genome.wustl.edu	37	7	87199540	87199540	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000927.3	-1	reviewed	e4-1	0.136	148	0%	112	15.2%	0	-	-	-	-	-
CCDC132	55610	genome.wustl.edu	37	7	92985390	92985390	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_017667.2	+1	validated	p.R925fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF2451
TRRAP	8295	genome.wustl.edu	37	7	98574160	98574160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003496.2	+1	validated	p.R2647W	1.000	16	0%	86	22.1%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PTCD1	26024	genome.wustl.edu	37	7	99027252	99027252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015545.2	-1	validated	p.A258T	1.000	28	0%	143	21.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PPR
CYP3A5	1577	genome.wustl.edu	37	7	99261605	99261605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000777.2	-1	reviewed	p.N262D	0.016	539	0.2%	245	16.3%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_p450,superfamily_Cytochrome P450
TAF6	6878	genome.wustl.edu	37	7	99709861	99709861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005641.2	-1	reviewed	p.A197V	0.923	7	0.000	62	0.339	13	30.7%	benign(0.01)	tolerated(0.2)	neutral(0.050)	NULL
LRRC4	64101	genome.wustl.edu	37	7	127669406	127669406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_022143.4	-1	validated	p.A430T	1.000	24	0%	122	17.2%	2	0%	probably_damaging(0.973)	deleterious(0.01)	deleterious(0.821)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
FLNC	2318	genome.wustl.edu	37	7	128485112	128485112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001458.4	+1	reviewed	p.V1198A	0.997	14	0%	41	19.5%	0	-	benign(0)	tolerated(0.84)	neutral(0.001)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
NOBOX	135935	genome.wustl.edu	37	7	144098355	144098355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001080413.2	-1	provisional	p.N210D	0.000	53	0%	130	24.6%	0	-	benign(0.006)	tolerated(0.08)	neutral(0.300)	NULL
MLL3	58508	genome.wustl.edu	37	7	151878863	151878863	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_170606.2	-1	reviewed	p.R2028*	1.000	50	0%	52	26.9%	2	0%	-	-	-	NULL
LOXL2	4017	genome.wustl.edu	37	8	23179745	23179746	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002318.2	-1	reviewed	p.S401fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SRCR,HMMSmart_SR,superfamily_Srcr_receptor
HMBOX1	79618	genome.wustl.edu	37	8	28906561	28906561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001135726.1	+1	validated	p.E374G	1.000	32	0%	51	17.6%	1	0%	possibly_damaging(0.679)	tolerated(0.06)	deleterious(0.565)	NULL
IKBKB	3551	genome.wustl.edu	37	8	42179636	42179636	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001556.1	+1	validated	p.F601	0.909	55	0%	201	28.4%	19	21%	-	-	-	NULL
PRKDC	5591	genome.wustl.edu	37	8	48696320	48696320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000314191	-1	known	p.A3719T	0.807	64	0%	155	18.1%	16	43.7%	benign(0)	tolerated(0.51)	neutral(0.009)	superfamily_Protein kinase-like (PK-like)
PXDNL	137902	genome.wustl.edu	37	8	52320862	52320862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_144651.4	-1	validated	p.A1108T	0.037	44	0%	85	15.3%	1	0%	possibly_damaging(0.592)	deleterious(0.01)	deleterious(0.610)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
C8orf34	116328	genome.wustl.edu	37	8	69445316	69445316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_052958.1	+1	predicted	p.I235T	0.854	117	0%	104	16.3%	3	33.3%	benign(0.004)	tolerated(0.17)	neutral(0.059)	NULL
POP1	10940	genome.wustl.edu	37	8	99146256	99146256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015029.2	+1	reviewed	p.I272T	0.130	324	0%	155	23.2%	0	-	benign(0.001)	tolerated(0.86)	neutral(0.001)	NULL
KCNV1	27012	genome.wustl.edu	37	8	110984534	110984534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014379.2	-1	reviewed	p.R315M	1.000	35	0%	82	18.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
EXT1	2131	genome.wustl.edu	37	8	118825189	118825189	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000127.2	-1	reviewed	p.S548	1.000	36	0%	130	21.5%	8	12.5%	-	-	-	HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases
FER1L6	654463	genome.wustl.edu	37	8	124989701	124989701	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001039112.2	+1	validated	p.H305	0.573	32	0%	45	13.3%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
EFR3A	23167	genome.wustl.edu	37	8	133023138	133023138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015137.3	+1	validated	p.Y821C	1.000	82	0%	116	17.2%	10	20%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
DENND3	22898	genome.wustl.edu	37	8	142185423	142185424	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014957.2	+1	validated	p.C723fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
UHRF2	115426	genome.wustl.edu	37	9	6420949	6420949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_152896.1	+1	reviewed	p.G64E	1.000	112	0%	118	26.3%	2	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
IFNA7	3444	genome.wustl.edu	37	9	21201628	21201628	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_021057.2	-1	validated	p.T179	0.000	283	0%	96	18.8%	0	-	-	-	-	HMMPfam_Interferon,superfamily_4-helical cytokines
KLHL9	55958	genome.wustl.edu	37	9	21333273	21333273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_018847.2	-1	validated	p.A529V	1.000	185	0%	232	21.1%	11	36.3%	benign(0.133)	deleterious(0.02)	neutral(0.394)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
PLAA	9373	genome.wustl.edu	37	9	26923308	26923308	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001031689.2	-1	validated	p.R303*	1.000	168	0%	141	19.9%	4	0%	-	-	-	NULL
FAM214B	80256	genome.wustl.edu	37	9	35106545	35106545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_025182.2	-1	predicted	p.G350D	1.000	44	0%	60	15%	5	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	NULL
SIT1	27240	genome.wustl.edu	37	9	35650040	35650040	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014450.2	-1	validated	p.L132	1.000	13	0%	60	23.3%	41	0%	-	-	-	NULL
TRPM6	140803	genome.wustl.edu	37	9	77416901	77416901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_017662.4	-1	reviewed	p.A641V	1.000	64	1.6%	56	25%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPIN1	10927	genome.wustl.edu	37	9	91083522	91083522	+	Splice_Site	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006717.2	+1	validated	e4+2	1.000	80	0%	110	17.3%	0	-	-	-	-	-
C9orf129	445577	genome.wustl.edu	37	9	96097840	96097840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001098808.1	-1	provisional	p.L61M	0.526	27	0%	167	24.6%	8	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
PHF2	5253	genome.wustl.edu	37	9	96416753	96416753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005392.3	+1	reviewed	p.R283H	1.000	13	0%	79	19%	3	0%	probably_damaging(0.971)	tolerated(0.29)	neutral(0.442)	HMMSmart_JmjC,HMMPfam_JmjC,superfamily_SSF51197
PHF2	5253	genome.wustl.edu	37	9	96428007	96428007	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005392.3	+1	reviewed	p.F659	0.995	19	0%	95	16.8%	3	33.3%	-	-	-	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100139120	100139120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_020893.1	+1	predicted	p.R1629C	0.655	43	0%	79	17.7%	28	28.5%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
COL27A1	85301	genome.wustl.edu	37	9	117026683	117026683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032888.2	+1	validated	p.L1082M	0.985	8	0.000	35	0.171	6	50%	unknown(0)	tolerated(0.14)	-	HMMPfam_Collagen
PAPPA	5069	genome.wustl.edu	37	9	118950361	118950361	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002581.3	+1	reviewed	p.F448	0.998	22	0%	44	15.9%	0	-	-	-	-	HMMPfam_Notch,HMMSmart_NL,superfamily_SSF55486
PAPPA	5069	genome.wustl.edu	37	9	119116066	119116066	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002581.3	+1	reviewed	p.A1447	0.480	49	0%	107	19.6%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module,superfamily_SSF55486
TRIM32	22954	genome.wustl.edu	37	9	119460226	119460226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001099679.1	+1	reviewed	p.R69C	1.000	21	0%	88	15.9%	1	0%	possibly_damaging(0.812)	deleterious(0)	deleterious(0.750)	superfamily_SSF57850
ZBTB6	10773	genome.wustl.edu	37	9	125674231	125674231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006626.4	-1	provisional	p.D41N	1.000	75	0%	135	19.3%	0	-	possibly_damaging(0.921)	tolerated(0.42)	neutral(0.385)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
NEK6	10783	genome.wustl.edu	37	9	127113223	127113223	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001145001.2	+1	reviewed	p.T347	1.000	11	0%	47	17%	95	26.3%	-	-	-	NULL
FAM129B	64855	genome.wustl.edu	37	9	130271314	130271314	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_022833.2	-1	validated	p.R420*	1.000	13	0%	37	21.6%	24	29.1%	-	-	-	NULL
USP20	10868	genome.wustl.edu	37	9	132631681	132631681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001008563.3	+1	validated	p.V457M	1.000	10	0%	43	20.9%	12	41.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,superfamily_SSF54001
ASS1	445	genome.wustl.edu	37	9	133355784	133355784	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000050.4	+1	reviewed	p.G262	0.268	7	0.000	72	0.236	166	25.9%	-	-	-	HMMPfam_Arginosuc_synth,superfamily_Argininosuccinate synthetase C-terminal domain
C9orf96	169436	genome.wustl.edu	37	9	136256564	136256564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_153710.3	+1	validated	p.A192V	0.003	39	0%	113	12.4%	0	-	benign(0.113)	tolerated(0.35)	neutral(0.029)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
BRD3	8019	genome.wustl.edu	37	9	136913391	136913391	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_007371.3	-1	reviewed	p.Q300	1.000	6	0.000	61	0.148	7	28.5%	-	-	-	superfamily_Bromodomain
TRAF2	7186	genome.wustl.edu	37	9	139804380	139804380	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_021138.3	+1	reviewed	p.H179	0.971	34	0%	136	22.1%	11	36.3%	-	-	-	HMMPfam_zf-TRAF
FAM166A	401565	genome.wustl.edu	37	9	140139591	140139591	+	Missense_Mutation	SNP	C	C	T	rs137862856	by1000genomes	TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001001710.1	-1	predicted	p.R201Q	1.000	9	0.000	25	0.280	0	-	benign(0.067)	tolerated(0.12)	neutral(0.265)	NULL
ZFAND4	93550	genome.wustl.edu	37	10	46135310	46135310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001128324.1	-1	validated	p.M224T	1.000	186	0%	167	20.4%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
JMJD1C	221037	genome.wustl.edu	37	10	64974658	64974658	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032776.1	-1	validated	p.G423	0.995	465	0%	235	25.5%	0	-	-	-	-	NULL
SEC24C	9632	genome.wustl.edu	37	10	75526556	75526556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004922.2	+1	reviewed	p.R613M	1.000	106	0%	163	17.2%	9	22.2%	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_Sec23_trunk,superfamily_vWA-like,superfamily_beta-sandwich domain of Sec23/24
PPIF	10105	genome.wustl.edu	37	10	81113543	81113543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005729.3	+1	reviewed	p.K190R	0.995	49	0%	108	23.1%	58	36.2%	benign(0.002)	tolerated(0.63)	neutral(0.004)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
PTEN	5728	genome.wustl.edu	37	10	89692902	89692902	+	Missense_Mutation	SNP	G	G	T	rs121909218		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000371953	+1	known	p.G129V	1.000	148	0%	72	29.2%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
BLNK	29760	genome.wustl.edu	37	10	97964350	97964350	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_013314.3	-1	reviewed	p.R280	0.982	55	0%	71	21.1%	23	30.4%	-	-	-	NULL
SLIT1	6585	genome.wustl.edu	37	10	98803209	98803209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003061.2	-1	validated	p.V639I	1.000	51	0%	369	21.1%	0	-	possibly_damaging(0.851)	tolerated(0.12)	deleterious(0.588)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
NFKB2	4791	genome.wustl.edu	37	10	104162098	104162098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001077494.1	+1	validated	p.L890F	1.000	10	0%	30	26.7%	157	35.6%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
NT5C2	22978	genome.wustl.edu	37	10	104849581	104849581	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001134373.1	-1	validated	p.V512L	0.984	58	0%	139	20.9%	32	46.8%	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
INA	9118	genome.wustl.edu	37	10	105037867	105037867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032727.3	+1	reviewed	p.R300H	1.000	9	0.000	27	0.259	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Filament
SH3PXD2A	9644	genome.wustl.edu	37	10	105363274	105363274	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000420222	-1	known	p.R494G	0.015	68	0%	76	18.4%	3	33.3%	-	-	-	NULL
WDR96	80217	genome.wustl.edu	37	10	105965739	105965739	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_025145.5	-1	provisional	p.G315	0.127	138	0%	67	16.4%	2	100%	-	-	-	superfamily_WD40 repeat-like
SORCS3	22986	genome.wustl.edu	37	10	106937874	106937874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014978.1	+1	reviewed	p.V651A	0.613	128	0.8%	81	19.8%	0	-	benign(0.002)	tolerated(0.7)	neutral(0.002)	HMMSmart_VPS10,superfamily_SSF110296
SORCS3	22986	genome.wustl.edu	37	10	107007086	107007087	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014978.1	+1	reviewed	p.V1035fs	0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
MXI1	4601	genome.wustl.edu	37	10	112044688	112044688	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_130439.3	+1	reviewed	p.S277	1.000	42	0%	68	17.6%	2	100%	-	-	-	NULL
ADRA2A	150	genome.wustl.edu	37	10	112838176	112838176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000681.3	+1	reviewed	p.A141V	1.000	15	0%	63	22.2%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
EIF3A	8661	genome.wustl.edu	37	10	120801732	120801732	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003750.2	-1	validated	p.R1100	0.971	56	0%	206	18.9%	56	26.7%	-	-	-	NULL
C10orf120	399814	genome.wustl.edu	37	10	124457811	124457811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001010912.1	-1	predicted	p.A149V	0.003	56	0%	218	21.6%	0	-	benign(0)	tolerated(1)	-	NULL
DCHS1	8642	genome.wustl.edu	37	11	6649960	6649960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003737.2	-1	reviewed	p.H1755N	0.018	22	0%	108	17.6%	0	-	benign(0.19)	tolerated(0.39)	neutral(0.034)	superfamily_Cadherin
RIC3	79608	genome.wustl.edu	37	11	8132448	8132448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024557.3	-1	validated	p.C302R	0.188	62	0%	117	12.8%	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
EIF3M	10480	genome.wustl.edu	37	11	32622234	32622234	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006360.3	+1	provisional	e9-1	1.000	195	0%	99	14.1%	0	-	-	-	-	-
OR5D13	390142	genome.wustl.edu	37	11	55541605	55541605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001001967.1	+1	provisional	p.R231Q	0.000	132	0%	61	18%	0	-	benign(0.011)	tolerated(0.24)	neutral(0.038)	HMMPfam_7tm_1,superfamily_SSF81321
TNKS1BP1	85456	genome.wustl.edu	37	11	57077118	57077119	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_033396.2	-1	validated	p.G1023fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SMTNL1	219537	genome.wustl.edu	37	11	57310258	57310258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001105565.1	+1	provisional	p.T66I	0.000	36	0%	101	14.9%	3	0%	benign(0)	tolerated(0.4)	neutral(0.016)	NULL
SLC22A8	9376	genome.wustl.edu	37	11	62763614	62763614	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004254.3	-1	reviewed	p.E258*	0.994	17	0%	36	25%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
TCIRG1	10312	genome.wustl.edu	37	11	67809238	67809238	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006019.2	+1	reviewed	p.A46T	0.943	26	0%	115	16.5%	26	34.6%	benign(0.047)	deleterious(0.02)	neutral(0.386)	HMMPfam_V_ATPase_I
PPP6R3	55291	genome.wustl.edu	37	11	68318641	68318641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_018312.4	+1	validated	p.S202L	1.000	249	0%	132	18.2%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_SAPS
CCND1	595	genome.wustl.edu	37	11	69465988	69465990	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_053056.2	+1	reviewed	p.E279in_frame_del	0.006:0.008:0.008	-	-	-	-	-	-	-	-	-	HMMPfam_Cyclin_C
ALG8	79053	genome.wustl.edu	37	11	77825036	77825036	+	Splice_Site	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024079.4	-1	reviewed	e7-1	1.000	143	0%	84	17.9%	0	-	-	-	-	-
MSANTD4	84437	genome.wustl.edu	37	11	105881368	105881368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032424.1	-1	validated	p.G93S	0.912	126	0%	162	19.1%	3	33.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
OR10S1	219873	genome.wustl.edu	37	11	123847671	123847671	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001004474.1	-1	provisional	p.R243H	0.000	14	0%	35	17.1%	0	-	benign(0.005)	tolerated(0.52)	neutral(0.009)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM118B	79607	genome.wustl.edu	37	11	126120402	126120402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024556.3	+1	validated	p.R114H	1.000	131	0%	137	21.2%	6	50%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
IQSEC3	440073	genome.wustl.edu	37	12	266194	266194	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015232.1	+1	validated	p.C416	0.992	9	0.000	51	0.176	0	-	-	-	-	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7
B4GALNT3	283358	genome.wustl.edu	37	12	668561	668561	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_173593.3	+1	validated	p.G954	0.465	31	0%	150	21.3%	16	18.7%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
PDZRN4	29951	genome.wustl.edu	37	12	41967524	41967524	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_013377.3	+1	validated	p.G723	1.000	28	0%	22	22.7%	0	-	-	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49420289	49420289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003482.3	-1	validated	p.R5154W	0.975	16	0%	66	19.7%	10	40%	unknown(0)	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49431543	49431543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003482.3	-1	validated	p.S3199N	1.000	15	0%	90	25.6%	1	0%	unknown(0)	-	-	NULL
FAIM2	23017	genome.wustl.edu	37	12	50284472	50284472	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_012306.2	-1	validated	p.T173	0.999	44	0%	167	26.3%	3	0%	-	-	-	HMMPfam_UPF0005
SOAT2	8435	genome.wustl.edu	37	12	53512167	53512167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003578.3	+1	reviewed	p.Y271C	1.000	112	0%	414	18.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBOAT
AMHR2	269	genome.wustl.edu	37	12	53819354	53819354	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_020547.2	+1	reviewed	p.S206	0.985	17	0%	76	26.3%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NEUROD4	58158	genome.wustl.edu	37	12	55420986	55420986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_021191.2	+1	validated	p.P255S	1.000	41	0%	76	22.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OR6C70	390327	genome.wustl.edu	37	12	55863138	55863138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001005499.1	-1	provisional	p.A262V	0.388	91	0%	41	19.5%	0	-	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	HMMPfam_7tm_1,superfamily_SSF81321
TMEM194A	23306	genome.wustl.edu	37	12	57457038	57457038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001130963.1	-1	validated	p.W282R	1.000	90	0%	112	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF2215
C12orf56	115749	genome.wustl.edu	37	12	64678468	64678468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001099676.2	-1	validated	p.R269H	0.538	106	0%	142	17.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYF6	4618	genome.wustl.edu	37	12	81101689	81101689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002469.2	+1	reviewed	p.A64V	1.000	22	0%	42	26.2%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_Basic,HMMSmart_SM00520
CRADD	8738	genome.wustl.edu	37	12	94243886	94243886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003805.3	+1	reviewed	p.R147C	1.000	16	0%	73	19.2%	3	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Death,HMMSmart_SM00005,PatternScan_IG_MHC,superfamily_DEATH domain
NUAK1	9891	genome.wustl.edu	37	12	106461183	106461183	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014840.2	-1	validated	p.T461	0.009	30	0%	177	24.3%	1	0%	-	-	-	NULL
RASAL1	8437	genome.wustl.edu	37	12	113537813	113537813	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004658.1	-1	reviewed	p.L779R	0.983	16	0%	57	19.3%	22	36.3%	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
TPCN1	53373	genome.wustl.edu	37	12	113724870	113724870	+	Silent	SNP	C	C	T	rs142475172	by1000genomes	TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001143819.1	+1	validated	p.I607	0.929	27	0%	120	23.3%	4	50%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SRRM4	84530	genome.wustl.edu	37	12	119591401	119591401	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_194286.2	+1	validated	p.S446	1.000	29	0%	82	15.9%	0	-	-	-	-	NULL
CIT	11113	genome.wustl.edu	37	12	120260757	120260757	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_007174.1	-1	validated	p.D326	1.000	75	0%	95	13.7%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ORAI1	84876	genome.wustl.edu	37	12	122079093	122079093	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032790.3	+1	reviewed	p.A150	0.000	11	0%	59	13.6%	41	9.7%	-	-	-	HMMPfam_DUF1650
DHX37	57647	genome.wustl.edu	37	12	125438645	125438645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032656.2	-1	reviewed	p.M856V	1.000	12	0%	58	20.7%	6	33.3%	probably_damaging(0.954)	deleterious(0.02)	deleterious(0.780)	HMMPfam_HA2
TMEM132D	121256	genome.wustl.edu	37	12	130184589	130184589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_133448.2	-1	validated	p.R245K	0.639	21	0%	67	31.3%	0	-	benign(0.006)	tolerated(1)	-	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130921539	130921539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015347.4	-1	validated	p.H635Y	0.857	15	0%	73	15.1%	0	-	possibly_damaging(0.625)	deleterious(0.03)	deleterious(0.583)	NULL
SACS	26278	genome.wustl.edu	37	13	23929960	23929960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014363.4	-1	reviewed	p.G264D	1.000	130	0%	178	16.9%	1	0%	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
USP12	219333	genome.wustl.edu	37	13	27649506	27649506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_182488.2	-1	provisional	p.P252S	1.000	129	0%	74	29.7%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_SSF54001
FREM2	341640	genome.wustl.edu	37	13	39262526	39262527	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_207361.4	+1	reviewed	p.E349fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DGKH	160851	genome.wustl.edu	37	13	42734209	42734209	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_178009.2	+1	reviewed	p.C264	0.795	29	0%	68	26.5%	1	100%	-	-	-	HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain
LRCH1	23143	genome.wustl.edu	37	13	47315819	47315819	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015116.2	+1	reviewed	p.R675C	1.000	49	0%	198	20.2%	0	-	possibly_damaging(0.817)	deleterious(0.04)	deleterious(0.658)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
OR11G2	390439	genome.wustl.edu	37	14	20666024	20666024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001005503.1	+1	provisional	p.R177H	0.000	75	0%	176	14.8%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	HMMPfam_7tm_1,superfamily_SSF81321
METTL17	64745	genome.wustl.edu	37	14	21458431	21458431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001029991.1	+1	validated	p.K40E	0.067	16	0%	67	22.4%	14	21.4%	possibly_damaging(0.615)	tolerated(0.31)	neutral(0.240)	NULL
HEATR5A	25938	genome.wustl.edu	37	14	31795407	31795407	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015473.2	-1	validated	p.W877*	1.000	58	0%	41	19.5%	0	-	-	-	-	superfamily_ARM repeat
SRP54	6729	genome.wustl.edu	37	14	35483087	35483087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003136.3	+1	validated	p.P289T	1.000	395	0%	182	9.9%	19	10.5%	possibly_damaging(0.435)	tolerated(0.08)	neutral(0.442)	HMMPfam_SRP54,superfamily_P-loop containing nucleoside triphosphate hydrolases
SOS2	6655	genome.wustl.edu	37	14	50585247	50585247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006939.2	-1	validated	p.R1272C	1.000	43	0%	155	21.3%	16	12.5%	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
FRMD6	122786	genome.wustl.edu	37	14	52182118	52182118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001042481.1	+1	validated	p.R301C	1.000	44	0%	73	23.3%	0	-	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_FERM_C,superfamily_SSF50729
ENTPD5	957	genome.wustl.edu	37	14	74443083	74443083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001249.2	-1	reviewed	p.G196W	1.000	30	0%	45	24.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GDA1_CD39
EML5	161436	genome.wustl.edu	37	14	89082509	89082511	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_183387.2	-1	validated	p.V1958in_frame_del	0.523:0.578:0.126	-	-	-	-	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DIO3	1735	genome.wustl.edu	37	14	102028146	102028146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001362.3	+1	reviewed	p.D79N	1.000	9	0.000	33	0.273	0	-	possibly_damaging(0.643)	tolerated(0.17)	neutral(0.284)	HMMPfam_T4_deiodinase
RYR3	6263	genome.wustl.edu	37	15	34072482	34072482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001036.3	+1	validated	p.T3070A	0.335	56	0%	121	18.2%	0	-	benign(0)	-	-	NULL
GPR176	11245	genome.wustl.edu	37	15	40093790	40093790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_007223.1	-1	provisional	p.R364H	1.000	41	2.4%	91	25.3%	0	-	benign(0.264)	deleterious(0.01)	neutral(0.433)	NULL
TYRO3	7301	genome.wustl.edu	37	15	41870246	41870246	+	Silent	SNP	G	G	A	rs61553785	byCluster;byFrequency;by1000genomes	TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006293.3	+1	reviewed	p.A815	0.022	16	0%	35	17.1%	6	50%	-	-	-	superfamily_Kinase_like
MGA	23269	genome.wustl.edu	37	15	42053939	42053939	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001080541.2	+1	validated	p.A2516	0.717	86	0%	70	18.6%	1	100%	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42133286	42133286	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005090.3	+1	validated	p.Q360*	0.944	74	0%	308	17.2%	5	20%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
SPTBN5	51332	genome.wustl.edu	37	15	42148639	42148639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_016642.2	-1	validated	p.A2954V	0.000	11	0%	24	41.7%	1	0%	benign(0.035)	tolerated(0.21)	neutral(0.046)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTBN5	51332	genome.wustl.edu	37	15	42166127	42166127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_016642.2	-1	validated	p.Q1567H	0.857	11	0%	106	13.2%	1	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MAP1A	4130	genome.wustl.edu	37	15	43815149	43815149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002373.5	+1	reviewed	p.R493H	0.964	56	0%	42	26.2%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DUOX1	53905	genome.wustl.edu	37	15	45454505	45454505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_017434.3	+1	reviewed	p.T1393I	1.000	25	0%	214	24.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NAD_binding_6,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain
SECISBP2L	9728	genome.wustl.edu	37	15	49329895	49329895	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014701.2	-1	provisional	p.P32	0.939	85	0%	105	11.4%	0	-	-	-	-	NULL
CGNL1	84952	genome.wustl.edu	37	15	57731432	57731432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032866.3	+1	validated	p.G412D	1.000	15	0%	24	25%	0	-	possibly_damaging(0.765)	deleterious(0)	deleterious(0.728)	NULL
UACA	55075	genome.wustl.edu	37	15	70952536	70952536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_018003.2	-1	validated	p.Q1378R	1.000	119	0%	106	22.6%	301	42.8%	possibly_damaging(0.779)	tolerated(0.5)	neutral(0.301)	NULL
RLBP1	6017	genome.wustl.edu	37	15	89753549	89753549	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000326.4	-1	reviewed	p.G307	0.175	22	0%	116	25%	0	-	-	-	-	HMMPfam_CRAL_TRIO
TARSL2	123283	genome.wustl.edu	37	15	102263311	102263311	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_152334.2	-1	validated	p.S118	0.000	129	0%	238	15.5%	1	0%	-	-	-	NULL
STUB1	10273	genome.wustl.edu	37	16	732452	732452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005861.2	+1	validated	p.A292V	1.000	30	0%	85	25.9%	220	39%	benign(0.242)	tolerated(0.09)	neutral(0.321)	HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box
IGFALS	3483	genome.wustl.edu	37	16	1841692	1841692	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004970.2	-1	reviewed	p.R243G	0.613	9	0.000	59	0.254	0	-	possibly_damaging(0.717)	tolerated(0.07)	deleterious(0.579)	HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF52058
ECI1	1632	genome.wustl.edu	37	16	2294550	2294550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001919.3	-1	reviewed	p.R100C	0.000	13	0%	24	33.3%	193	48.1%	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_ECH,superfamily_ClpP/crotonase
KREMEN2	79412	genome.wustl.edu	37	16	3016720	3016720	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_172229.1	+1	reviewed	p.A188	0.993	7	0.000	21	0.190	0	-	-	-	-	HMMPfam_WSC,HMMSmart_SM00321
THOC6	79228	genome.wustl.edu	37	16	3077019	3077019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024339.3	+1	validated	p.S215L	0.989	60	0%	310	23.9%	119	39.4%	benign(0.032)	deleterious(0.02)	neutral(0.385)	superfamily_WD40 repeat-like
CREBBP	1387	genome.wustl.edu	37	16	3777959	3777959	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004380.2	-1	reviewed	p.P2363	0.541	82	0%	97	28.9%	36	38.8%	-	-	-	NULL
PPL	5493	genome.wustl.edu	37	16	4941909	4941909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002705.4	-1	reviewed	p.S624I	0.999	10	0%	73	13.7%	3	0%	benign(0.097)	tolerated(0.05)	neutral(0.353)	superfamily_Spectrin repeat
ZP2	7783	genome.wustl.edu	37	16	21214546	21214546	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003460.1	-1	reviewed	p.Q333	1.000	99	0%	52	25%	0	-	-	-	-	NULL
TNRC6A	27327	genome.wustl.edu	37	16	24831626	24831626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014494.2	+1	reviewed	p.N1749K	0.997	66	0%	100	28%	8	25%	possibly_damaging(0.692)	tolerated(0.36)	neutral(0.268)	NULL
TBC1D10B	26000	genome.wustl.edu	37	16	30376910	30376911	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015527.3	-1	validated	p.S321fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SRCAP	10847	genome.wustl.edu	37	16	30723663	30723663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006662.2	+1	validated	p.M632I	1.000	13	0%	50	24%	1	0%	unknown(0)	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
PYDC1	260434	genome.wustl.edu	37	16	31228177	31228177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_152901.2	-1	provisional	p.A58V	0.000	5	0.000	43	0.209	0	-	benign(0.271)	deleterious(0.05)	neutral(0.374)	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain
ARMC5	79798	genome.wustl.edu	37	16	31476145	31476145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001105247.1	+1	validated	p.A601T	0.322	12	0%	16	31.2%	5	20%	benign(0.002)	tolerated(1)	-	superfamily_ARM repeat
SLC5A2	6524	genome.wustl.edu	37	16	31496217	31496218	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003041.3	+1	reviewed	p.L92fs	0.999:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_SSF
GPT2	84706	genome.wustl.edu	37	16	46934634	46934634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_133443.2	+1	validated	p.P125H	1.000	30	0%	85	27.1%	7	28.5%	benign(0.341)	deleterious(0.01)	deleterious(0.513)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
SIAH1	6477	genome.wustl.edu	37	16	48395622	48395622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001006610.1	-1	reviewed	p.P271S	1.000	77	0%	163	22.7%	25	52%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Traf_like,HMMPfam_Sina
GOT2	2806	genome.wustl.edu	37	16	58756158	58756158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002080.2	-1	reviewed	p.N91D	0.913	28	0%	100	20%	17	41.1%	benign(0.039)	tolerated(0.28)	neutral(0.034)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ACD	65057	genome.wustl.edu	37	16	67692203	67692203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001082486.1	-1	reviewed	p.P384S	0.930	38	0%	65	16.9%	59	18.6%	probably_damaging(0.98)	tolerated(0.56)	neutral(0.430)	NULL
PHLPP2	23035	genome.wustl.edu	37	16	71692612	71692612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015020.2	-1	validated	p.A698T	1.000	185	0%	420	19.8%	0	-	probably_damaging(0.994)	tolerated(0.09)	deleterious(0.748)	HMMSmart_SM00364,superfamily_L domain-like
ZFHX3	463	genome.wustl.edu	37	16	72992196	72992197	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006885.3	-1	reviewed	p.616in_frame_insF	0.203:0.195	-	-	-	-	-	-	-	-	-	NULL
ABR	29	genome.wustl.edu	37	17	973327	973327	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_021962.2	-1	reviewed	p.R300*	1.000	8	0.000	48	0.229	9	11.1%	-	-	-	superfamily_PH domain-like
SHBG	6462	genome.wustl.edu	37	17	7533563	7533563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001040.3	+1	reviewed	p.R25C	0.001	18	0%	130	16.9%	1	0%	possibly_damaging(0.772)	deleterious(0.02)	deleterious(0.670)	superfamily_Concanavalin A-like lectins/glucanases
MYH13	8735	genome.wustl.edu	37	17	10216011	10216011	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003802.2	-1	validated	p.C1415	0.993	36	0%	141	17%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYOCD	93649	genome.wustl.edu	37	17	12639597	12639597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_153604.2	+1	reviewed	p.P179T	0.983	39	0%	88	15.9%	0	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
NCOR1	9611	genome.wustl.edu	37	17	15974945	15974945	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006311.2	-1	reviewed	p.D1310	1.000	314	0%	221	20.8%	3	0%	-	-	-	NULL
SHMT1	6470	genome.wustl.edu	37	17	18232140	18232140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004169.3	-1	reviewed	p.A459V	0.000	17	0%	76	15.8%	19	52.6%	benign(0.001)	tolerated(0.36)	neutral(0.020)	superfamily_PLP-dependent transferases
MFAP4	4239	genome.wustl.edu	37	17	19290390	19290390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000395592	-1	known	p.E14D	0.001	4	0.000	41	0.293	0	-	unknown(0)	-	-	NULL
TMEM97	27346	genome.wustl.edu	37	17	26652550	26652550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014573.2	+1	validated	p.Y50H	1.000	102	0%	200	20%	8	62.5%	possibly_damaging(0.651)	tolerated(0.49)	neutral(0.240)	NULL
SLC13A2	9058	genome.wustl.edu	37	17	26818479	26818479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003984.3	+1	validated	p.T200M	0.000	12	0%	23	21.7%	0	-	possibly_damaging(0.66)	tolerated(0.1)	deleterious(0.519)	HMMPfam_Na_sulph_symp
EFCAB5	374786	genome.wustl.edu	37	17	28419882	28419882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_198529.3	+1	validated	p.N1417D	0.000	417	0%	167	26.9%	0	-	benign(0.254)	tolerated(0.29)	neutral(0.055)	NULL
C17orf98	388381	genome.wustl.edu	37	17	36997510	36997510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001080465.2	-1	validated	p.A45T	0.975	14	0%	48	25%	1	100%	possibly_damaging(0.852)	deleterious(0.03)	deleterious(0.692)	NULL
KCNH4	23415	genome.wustl.edu	37	17	40318419	40318419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_012285.2	-1	reviewed	p.P579L	1.000	13	0%	66	21.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
DHX8	1659	genome.wustl.edu	37	17	41598242	41598242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004941.1	+1	reviewed	p.P1021S	1.000	29	0%	74	18.9%	17	35.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HA2,superfamily_SSF52540
G6PC3	92579	genome.wustl.edu	37	17	42152401	42152401	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_138387.3	+1	reviewed	p.R161*	0.996	42	0%	264	21.6%	51	0%	-	-	-	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
ARHGAP27	201176	genome.wustl.edu	37	17	43481429	43481429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_199282.2	-1	validated	p.R164C	0.997	19	0%	161	19.3%	8	12.5%	possibly_damaging(0.939)	deleterious(0.04)	deleterious(0.734)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
CDC27	996	genome.wustl.edu	37	17	45249385	45249385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001114091.1	-1	reviewed	p.R50H	1.000	72	0%	72	16.7%	2	0%	probably_damaging(0.986)	tolerated(0.1)	deleterious(0.721)	superfamily_TPR-like
KPNB1	3837	genome.wustl.edu	37	17	45750862	45750862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000290158	+1	known	p.I568V	1.000	281	0%	223	20.6%	56	30.3%	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_ARM repeat
COX11	1353	genome.wustl.edu	37	17	53045825	53045825	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004375.3	-1	reviewed	p.L61	0.000	11	0%	26	23.1%	18	38.8%	-	-	-	NULL
USP36	57602	genome.wustl.edu	37	17	76795040	76795040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_025090.3	-1	validated	p.R1064W	0.723	49	0%	200	16.5%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENGASE	64772	genome.wustl.edu	37	17	77076406	77076406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001042573.1	+1	validated	p.R228H	0.431	19	0%	71	18.3%	1	100%	benign(0.013)	tolerated(0.16)	neutral(0.060)	HMMPfam_Glyco_hydro_85
AZI1	22994	genome.wustl.edu	37	17	79172773	79172773	+	Splice_Site	SNP	T	T	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014984.2	-1	validated	e10-2	0.782	19	0%	60	28.3%	2	100%	-	-	-	-
FASN	2194	genome.wustl.edu	37	17	80037091	80037091	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004104.4	-1	reviewed	p.S2488	0.708	16	0%	60	28.3%	195	47.1%	-	-	-	HMMPfam_Thioesterase,superfamily_alpha/beta-Hydrolases
CETN1	1068	genome.wustl.edu	37	18	580801	580801	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004066.1	+1	reviewed	p.N131	0.005	28	0%	96	19.8%	2	50%	-	-	-	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
GREB1L	80000	genome.wustl.edu	37	18	18981249	18981249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001142966.1	+1	provisional	p.Q224R	1.000	103	0%	81	21%	0	-	unknown(0)	deleterious(0.03)	-	NULL
CCDC11	220136	genome.wustl.edu	37	18	47777909	47777909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_145020.3	-1	validated	p.S240I	0.000	35	0%	200	22%	24	37.5%	possibly_damaging(0.805)	tolerated(0.4)	neutral(0.319)	NULL
DCC	1630	genome.wustl.edu	37	18	50936933	50936933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005215.3	+1	reviewed	p.T1016I	1.000	167	0%	59	22%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ZNF407	55628	genome.wustl.edu	37	18	72343398	72343398	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_017757.2	+1	reviewed	p.D141	0.003	77	0%	105	16.2%	1	0%	-	-	-	NULL
PIAS4	51588	genome.wustl.edu	37	19	4028788	4028788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015897.2	+1	provisional	p.L248P	1.000	16	0%	109	21.1%	11	63.6%	benign(0.059)	tolerated(0.11)	neutral(0.276)	NULL
CAPS	828	genome.wustl.edu	37	19	5915237	5915237	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004058.3	+1	validated	p.T158	0.000	15	0%	97	20.6%	704	50.4%	-	-	-	HMMSmart_EFh,superfamily_SSF47473
P2RY11	5032	genome.wustl.edu	37	19	10225305	10225305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002566.4	+1	reviewed	p.R339M	0.000	23	0%	44	22.7%	61	34.4%	benign(0.267)	deleterious(0.01)	neutral(0.434)	superfamily_Family A G protein-coupled receptor-like
TYK2	7297	genome.wustl.edu	37	19	10477241	10477241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003331.4	-1	reviewed	p.V161L	1.000	21	0%	87	26.4%	16	31.2%	benign(0.202)	tolerated(0.59)	neutral(0.024)	HMMSmart_B41
KEAP1	9817	genome.wustl.edu	37	19	10610205	10610205	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_012289.3	-1	reviewed	p.R169C	0.832	14	0%	100	28%	13	46.1%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
OR7C1	26664	genome.wustl.edu	37	19	14910584	14910584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_198944.1	-1	validated	p.R122H	0.476	45	0%	123	18.7%	0	-	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
ENSG00000225607	0	genome.wustl.edu	37	19	15882883	15882883	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000412610	-1	known	p.Q156*	1.000	46	0%	125	20%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
NWD1	284434	genome.wustl.edu	37	19	16874676	16874676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001007525.2	+1	validated	p.A589V	0.983	21	0%	69	24.6%	1	0%	probably_damaging(0.983)	tolerated(0.52)	neutral(0.438)	NULL
SUGP2	10147	genome.wustl.edu	37	19	19136994	19136994	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001017392.3	-1	reviewed	p.D55N	0.986	11	0%	36	19.4%	5	0%	benign(0.052)	deleterious(0)	neutral(0.448)	NULL
GMIP	51291	genome.wustl.edu	37	19	19751123	19751123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_016573.2	-1	reviewed	p.K137N	0.876	35	0%	126	21.4%	6	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ATP13A1	57130	genome.wustl.edu	37	19	19756563	19756563	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_020410.2	-1	validated	p.P1133A	1.000	15	0%	100	20%	210	38%	benign(0.076)	tolerated(1)	neutral(0.005)	NULL
ZNF792	126375	genome.wustl.edu	37	19	35449254	35449254	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_175872.4	-1	validated	p.G502A	0.981	41	0%	101	21.8%	1	0%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	superfamily_C2H2 and C2HC zinc fingers
SCN1B	6324	genome.wustl.edu	37	19	35524447	35524447	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_199037.3	+1	reviewed	p.E84	0.996	26	0%	121	25.6%	1	100%	-	-	-	HMMPfam_ig,superfamily_SSF48726
DPF1	8193	genome.wustl.edu	37	19	38704353	38704353	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000355526	-1	known	p.R334C	0.914	4	0.000	43	0.209	1	0%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
CATSPERG	57828	genome.wustl.edu	37	19	38849106	38849107	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_021185.4	+1	validated	p.E468fs	0.000:0.173	-	-	-	-	-	-	-	-	-	NULL
ENSG00000213926	0	genome.wustl.edu	37	19	39745678	39745678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000396851	-1	known	p.L77S	0.998	8	0.000	25	0.320	0	-	-	-	-	HMMPfam_SelR,superfamily_Mss4-like
DHX34	9704	genome.wustl.edu	37	19	47856393	47856393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014681.5	+1	reviewed	p.R36C	0.992	21	0%	62	25.8%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
POLD1	5424	genome.wustl.edu	37	19	50919778	50919778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000376930	+1	known	p.C949F	1.000	5	0.000	15	0.400	70	12.8%	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	NULL
ZNF613	79898	genome.wustl.edu	37	19	52448397	52448397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001031721.3	+1	validated	p.T421A	0.080	125	0%	88	18.2%	6	33.3%	possibly_damaging(0.743)	tolerated(0.12)	deleterious(0.533)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF766	90321	genome.wustl.edu	37	19	52793485	52793485	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001010851.2	+1	validated	p.S147	0.000	121	0%	95	20%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF578	147660	genome.wustl.edu	37	19	53014345	53014345	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001099694.1	+1	validated	p.G237	0.468	197	0%	86	25.6%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF665	79788	genome.wustl.edu	37	19	53669364	53669364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024733.3	-1	provisional	p.R127C	0.000	116	0%	180	17.2%	0	-	possibly_damaging(0.937)	tolerated(0.08)	deleterious(0.683)	NULL
MIR519D	574480	genome.wustl.edu	37	19	54216629	54216629	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000385246	+1	known	NULL	0.024	140	0%	129	19.4%	0	-	-	-	-	-
NLRP13	126204	genome.wustl.edu	37	19	56443426	56443426	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_176810.2	-1	validated	p.V84	0.000	35	0%	41	19.5%	0	-	-	-	-	HMMPfam_PAAD_DAPIN,superfamily_DEATH_like
ZNF470	388566	genome.wustl.edu	37	19	57089527	57089527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001001668.3	+1	validated	p.G577D	0.213	87	0%	80	15%	3	0%	probably_damaging(1)	tolerated(0.61)	deleterious(0.504)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
USP29	57663	genome.wustl.edu	37	19	57642512	57642512	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_020903.2	+1	validated	p.Y823	1.000	49	0%	50	14%	0	-	-	-	-	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_SSF54001
ZNF606	80095	genome.wustl.edu	37	19	58490612	58490612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_025027.3	-1	validated	p.T479I	1.000	169	0.6%	109	14.7%	2	0%	probably_damaging(0.954)	deleterious(0.03)	deleterious(0.762)	superfamily_C2H2 and C2HC zinc fingers
JAG1	182	genome.wustl.edu	37	20	10627626	10627627	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000214.2	-1	reviewed	p.C615fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196
JAG1	182	genome.wustl.edu	37	20	10639296	10639301	+	In_Frame_Del	DEL	GCTTCA	GCTTCA	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	GCTTCA	GCTTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000214.2	-1	reviewed	p.LK170in_frame_del	1.000:1.000:1.000:1.000:0.937:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_DSL,HMMSmart_DSL
TASP1	55617	genome.wustl.edu	37	20	13605882	13605882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_017714.2	-1	reviewed	p.E55K	1.000	159	0%	117	26.5%	1	0%	possibly_damaging(0.942)	tolerated(0.05)	deleterious(0.732)	superfamily_SSF56235
PYGB	5834	genome.wustl.edu	37	20	25255336	25255336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002862.3	+1	reviewed	p.G213S	0.998	25	0%	81	23.5%	2	0%	benign(0.012)	tolerated(0.16)	neutral(0.060)	HMMPfam_Phosphorylase,superfamily_SSF53756
AHCY	191	genome.wustl.edu	37	20	32878558	32878558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_000687.2	-1	reviewed	p.A249T	1.000	18	0%	126	21.4%	105	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
CTNNBL1	56259	genome.wustl.edu	37	20	36405792	36405792	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_030877.3	+1	reviewed	p.L266	1.000	111	0%	82	19.5%	29	24.1%	-	-	-	superfamily_ARM repeat
MYBL2	4605	genome.wustl.edu	37	20	42315528	42315528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002466.2	+1	reviewed	p.W106R	1.000	19	0%	61	19.7%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
PIGT	51604	genome.wustl.edu	37	20	44048846	44048846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015937.4	+1	reviewed	p.T251M	0.494	39	0%	154	19.5%	47	27.6%	possibly_damaging(0.948)	tolerated(0.26)	neutral(0.425)	HMMPfam_Gpi16
WFDC2	10406	genome.wustl.edu	37	20	44098428	44098428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006103.3	+1	reviewed	p.A3T	0.013	4	0.000	47	0.191	457	43.3%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
SNX21	90203	genome.wustl.edu	37	20	44463093	44463093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_033421.2	+1	reviewed	p.S92L	0.192	7	0.000	38	0.395	4	50%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
ZSWIM1	90204	genome.wustl.edu	37	20	44511373	44511373	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_080603.4	+1	validated	p.L48	1.000	65	1.5%	217	19.8%	3	33.3%	-	-	-	NULL
CDH4	1002	genome.wustl.edu	37	20	60485504	60485504	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001794.2	+1	reviewed	p.R405	0.103	17	0%	64	20.3%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
ADAMTS5	11096	genome.wustl.edu	37	21	28304354	28304354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_007038.3	-1	reviewed	p.G673D	1.000	42	0%	74	10.8%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
KRTAP19-1	337882	genome.wustl.edu	37	21	31852451	31852451	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_181607.1	-1	provisional	p.Y62	0.018	79	0%	192	22.4%	0	-	-	-	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34003859	34003859	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003895.3	-1	validated	p.R1390*	0.001	103	0%	86	23.3%	3	0%	-	-	-	NULL
ABCG1	9619	genome.wustl.edu	37	21	43711617	43711617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_004915.3	+1	reviewed	p.P514T	1.000	21	0%	89	24.7%	15	0%	possibly_damaging(0.69)	tolerated(0.16)	neutral(0.306)	HMMPfam_ABC2_membrane
TMPRSS3	64699	genome.wustl.edu	37	21	43803308	43803309	+	Splice_Site	INS	-	-	TA	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_024022.2	-1	reviewed	e7-1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
TRAPPC10	7109	genome.wustl.edu	37	21	45511918	45511918	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003274.4	+1	reviewed	p.T995	0.000	149	0.7%	259	20.8%	5	40%	-	-	-	NULL
CCT8L2	150160	genome.wustl.edu	37	22	17073056	17073056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_014406.4	-1	validated	p.R129C	0.093	20	0%	89	20.2%	0	-	possibly_damaging(0.876)	deleterious(0.04)	deleterious(0.690)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
CLTCL1	8218	genome.wustl.edu	37	22	19207420	19207420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_007098.3	-1	reviewed	p.P965T	1.000	23	0%	108	15.7%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
HIRA	7290	genome.wustl.edu	37	22	19396040	19396040	+	Silent	SNP	A	A	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003325.3	-1	reviewed	p.I59	1.000	70	0%	94	19.1%	2	50%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
TXNRD2	10587	genome.wustl.edu	37	22	19868152	19868152	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_006440.3	-1	reviewed	p.Y392C	0.997	31	0%	51	21.6%	26	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FAD/NAD-linked reductases dimerisation (C-terminal) domain
AIFM3	150209	genome.wustl.edu	37	22	21329051	21329051	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_144704.2	+1	validated	p.I222	0.979	9	0.000	77	0.208	2	0%	-	-	-	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
SGSM1	129049	genome.wustl.edu	37	22	25320155	25320155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001039948.2	+1	validated	p.M1121V	1.000	23	0%	58	22.4%	0	-	possibly_damaging(0.9)	deleterious(0.01)	deleterious(0.762)	superfamily_Ypt/Rab-GAP domain of gyp1p
EWSR1	2130	genome.wustl.edu	37	22	29693885	29693885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005243.3	+1	reviewed	p.R455W	0.996	64	0%	101	23.8%	325	31%	unknown(0)	deleterious(0.03)	-	superfamily_RNA-binding domain RBD
MYH9	4627	genome.wustl.edu	37	22	36691022	36691022	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002473.4	-1	reviewed	p.Q1196*	0.999	19	0%	119	18.5%	132	2.2%	-	-	-	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
EP300	2033	genome.wustl.edu	37	22	41565523	41565523	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001429.3	+1	reviewed	p.Y1397D	1.000	265	0.4%	147	21.8%	5	0%	unknown(0)	deleterious(0)	-	HMMPfam_DUF906
RANGAP1	5905	genome.wustl.edu	37	22	41650390	41650390	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002883.2	-1	reviewed	p.E394	0.016	33	0%	188	19.1%	33	33.3%	-	-	-	NULL
FAM109B	150368	genome.wustl.edu	37	22	42473963	42473963	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001002034.2	+1	validated	p.S222	0.980	10	0%	32	43.8%	1	0%	-	-	-	NULL
CRELD2	79174	genome.wustl.edu	37	22	50316038	50316038	+	Missense_Mutation	SNP	C	C	T	rs186623329	by1000genomes	TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001135101.1	+1	provisional	p.T229M	0.000	25	4%	61	24.6%	4	0%	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	superfamily_Grow_fac_recept
ARSH	347527	genome.wustl.edu	37	X	2928153	2928153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001011719.1	+1	validated	p.R59W	0.952	21	0%	72	23.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfatase,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core
SHROOM2	357	genome.wustl.edu	37	X	9905292	9905296	+	Frame_Shift_Del	DEL	CCTGC	CCTGC	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	CCTGC	CCTGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001649.2	+1	reviewed	p.L1238fs	0.851:0.963:0.011:0.012:0.010	-	-	-	-	-	-	-	-	-	NULL
SH3KBP1	30011	genome.wustl.edu	37	X	19560229	19560229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_031892.2	-1	reviewed	p.A569V	0.002	31	0%	101	12.9%	54	11.1%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
BCOR	54880	genome.wustl.edu	37	X	39922158	39922158	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000427012	-1	known	p.K33R	0.582	72	0%	385	15.8%	2	100%	-	-	-	NULL
CASK	8573	genome.wustl.edu	37	X	41446202	41446202	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_003688.3	-1	reviewed	p.D424	0.998	433	0%	216	19.4%	3	33.3%	-	-	-	HMMSmart_L27,HMMPfam_L27
RBM10	8241	genome.wustl.edu	37	X	47045696	47045696	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_005676.3	+1	reviewed	p.D859	1.000	23	0%	96	13.5%	123	76.4%	-	-	-	HMMPfam_G-patch,HMMSmart_SM00443
TBC1D25	4943	genome.wustl.edu	37	X	48417699	48417699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002536.2	+1	validated	p.I224V	1.000	21	0%	66	27.3%	2	0%	benign(0.005)	tolerated(0.21)	neutral(0.044)	superfamily_Ypt/Rab-GAP domain of gyp1p
ITIH6	347365	genome.wustl.edu	37	X	54783990	54783990	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_198510.2	-1	reviewed	p.H839	0.000	79	0%	269	17.5%	0	-	-	-	-	NULL
ZXDA	7789	genome.wustl.edu	37	X	57935818	57935818	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_007156.4	-1	reviewed	p.N346T	1.000	27	0%	156	21.2%	0	-	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ACRC	93953	genome.wustl.edu	37	X	70823634	70823634	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_052957.4	+1	validated	p.P169	0.343	82	0%	192	22.4%	1	0%	-	-	-	NULL
PHKA1	5255	genome.wustl.edu	37	X	71843050	71843050	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002637.3	-1	reviewed	p.P623	0.999	107	0%	96	16.7%	0	-	-	-	-	HMMPfam_PHK_AB
GPR174	84636	genome.wustl.edu	37	X	78427096	78427096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_032553.1	+1	validated	p.L198F	1.000	67	0%	47	29.8%	1	0%	benign(0.145)	tolerated(0.05)	neutral(0.358)	HMMPfam_7tm_1,superfamily_SSF81321
HMGN5	79366	genome.wustl.edu	37	X	80370593	80370593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_030763.2	-1	reviewed	p.E135G	0.006	999	0%	491	15.7%	20	100%	unknown(0)	tolerated(0.05)	-	NULL
ZCCHC16	340595	genome.wustl.edu	37	X	111698687	111698687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001004308.2	+1	validated	p.L244P	0.000	97	0%	44	29.5%	0	-	probably_damaging(0.98)	tolerated(0.36)	neutral(0.444)	NULL
MIR1277	100302214	genome.wustl.edu	37	X	117520366	117520367	+	RNA	DEL	AT	AT	-	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000408536	+1	known	NULL	0.986:0.997	-	-	-	-	-	-	-	-	-	-
DOCK11	139818	genome.wustl.edu	37	X	117785949	117785949	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_144658.3	+1	validated	p.L1535P	1.000	153	0%	67	17.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEPT6	23157	genome.wustl.edu	37	X	118767331	118767331	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_015129.5	-1	reviewed	p.E361*	1.000	208	0%	535	20.6%	37	0%	-	-	-	NULL
BCORL1	63035	genome.wustl.edu	37	X	129150034	129150034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_021946.3	+1	reviewed	p.V1096I	0.000	19	0%	56	17.9%	1	100%	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
RENBP	5973	genome.wustl.edu	37	X	153205673	153205673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_002910.5	-1	reviewed	p.M320T	1.000	25	0%	73	21.9%	59	3.3%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_Six-hairpin glycosidases,HMMPfam_GlcNAc_2-epim
TKTL1	8277	genome.wustl.edu	37	X	153539321	153539321	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	ENST00000426203	+1	known	p.W144*	0.793	41	0%	213	20.7%	0	-	benign(0.309)	tolerated(0.68)	neutral(0.099)	HMMPfam_Transketolase_N,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
TKTL1	8277	genome.wustl.edu	37	X	153556199	153556199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_012253.3	+1	validated	p.V505I	0.997	160	0%	262	17.6%	0	-	benign(0.059)	tolerated(0.13)	neutral(0.257)	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
FLNA	2316	genome.wustl.edu	37	X	153580787	153580787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0TA-01A-11D-A10B-09	TCGA-BS-A0TA-10A-01D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1f167251-c06a-43d7-90cd-b4cd75a935ba	7b70f969-ae1a-4a96-a768-fd86cd32469a	NM_001110556.1	-1	reviewed	p.Q2177H	1.000	20	0%	72	16.7%	94	0%	benign(0.049)	tolerated(0.1)	neutral(0.289)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
