Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
SPEN	23013	broad.mit.edu	37	1	16254612	16254612	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:16254612A>G	uc001axk.1	+	11	2081	c.1877A>G	c.(1876-1878)TAT>TGT	p.Y626C	SPEN_uc010obp.1_Missense_Mutation_p.Y585C	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	626	Arg-rich.|Tyr-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TCCTACGACTATAACCAAGAT	0.398000													19	24					0	0	0	0
LAPTM5	7805	broad.mit.edu	37	1	31210496	31210496	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:31210496C>A	uc001bsc.2	-	6	652	c.561G>T	c.(559-561)ATG>ATT	p.M187I		NM_006762	NP_006753	Q13571	LAPM5_HUMAN	lysosomal protein transmembrane 5	187	Helical; (Potential).				transport	integral to plasma membrane|lysosomal membrane					0		Colorectal(325;0.0199)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0966)|Medulloblastoma(700;0.151)|Ovarian(437;0.192)		STAD - Stomach adenocarcinoma(196;0.0196)|READ - Rectum adenocarcinoma(331;0.0649)		AGATGATCATCATCTTGATGA	0.522000													23	45					7.07758e-08	7.91024e-08	1	0
EIF2C1	26523	broad.mit.edu	37	1	36372612	36372612	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:36372612T>G	uc001bzl.2	+	12	1687	c.1474T>G	c.(1474-1476)TAT>GAT	p.Y492D	EIF2C1_uc001bzk.2_Missense_Mutation_p.Y417D|EIF2C1_uc009vuy.2_RNA	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	492					negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTTCTGCAAATATGCACAGGG	0.537000													37	52					0	0	0	0
C1orf168	199920	broad.mit.edu	37	1	57257988	57257988	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:57257988G>T	uc001cym.3	-	2	904	c.498C>A	c.(496-498)GCC>GCA	p.A166A	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.A166A	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	166										ovary(3)|skin(2)	5						CCAGATGGATGGCCTTACTTC	0.483000													37	62					1.836e-18	2.25058e-18	1	0
MCOLN3	55283	broad.mit.edu	37	1	85491754	85491754	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:85491754G>T	uc001dkp.2	-	9	1056	c.963C>A	c.(961-963)TTC>TTA	p.F321L	MCOLN3_uc001dko.2_5'Flank|MCOLN3_uc001dkq.2_Missense_Mutation_p.F265L|MCOLN3_uc001dkr.2_3'UTR|MCOLN3_uc001dks.3_Missense_Mutation_p.F166L	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	321						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		AATGGAGGAGGAAAAAATTGA	0.363000													10	16					2.80697e-09	3.16379e-09	1	0
DPYD	1806	broad.mit.edu	37	1	97915726	97915726	+	Silent	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:97915726G>C	uc001drv.2	-	14	1931	c.1794C>G	c.(1792-1794)CCC>CCG	p.P598P		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	598					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GGCCATACATGGGGCCAGAGG	0.448000													28	52					0	0	0	0
TARS2	80222	broad.mit.edu	37	1	150478094	150478094	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:150478094C>A	uc001euq.2	+	17	1928	c.1921C>A	c.(1921-1923)CTG>ATG	p.L641M	TARS2_uc001eur.2_Missense_Mutation_p.L559M|TARS2_uc009wlt.2_Missense_Mutation_p.L267M|TARS2_uc009wls.2_Missense_Mutation_p.L511M|ECM1_uc010pce.1_5'Flank|ECM1_uc010pcf.1_5'Flank|ECM1_uc001eus.2_5'Flank|ECM1_uc001eut.2_5'Flank|ECM1_uc001euu.2_5'Flank|ECM1_uc001euv.2_5'Flank|ECM1_uc009wlu.2_5'Flank	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	641					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	GGCTGCAGGACTGGTCAGTGA	0.527000													42	69					4.0306e-16	4.85131e-16	1	0
VPS72	6944	broad.mit.edu	37	1	151150569	151150569	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:151150569C>T	uc001exe.1	-	5	658	c.615G>A	c.(613-615)CGG>CGA	p.R205R	TMOD4_uc001exd.2_5'Flank|TMOD4_uc001exc.3_5'Flank|TMOD4_uc010pct.1_5'Flank|VPS72_uc001exf.1_Silent_p.R205R	NM_005997	NP_005988	Q15906	VPS72_HUMAN	transcription factor-like 1	205	Potential.				chromatin modification|negative regulation of transcription from RNA polymerase II promoter	nucleus|protein complex	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|pancreas(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CGGGGCACTTCCGCTTCTTAT	0.493000													19	57					0	0	0	0
FAM189B	10712	broad.mit.edu	37	1	155223908	155223908	+	Silent	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:155223908A>T	uc001fjm.2	-	3	966	c.360T>A	c.(358-360)GCT>GCA	p.A120A	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_5'Flank|FAM189B_uc001fjn.2_Intron|FAM189B_uc001fjo.2_Silent_p.A101A|FAM189B_uc001fjp.2_Intron|FAM189B_uc001fjq.1_Silent_p.A120A	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	120						integral to membrane	WW domain binding			ovary(1)|breast(1)	2						GGGCCAGTTGAGCATTCTTAC	0.532000													83	111					0	0	0	0
SLAMF6	114836	broad.mit.edu	37	1	160466073	160466073	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:160466073T>G	uc001fwe.1	-	2	220	c.160A>C	c.(160-162)ACT>CCT	p.T54P	SLAMF6_uc001fwd.1_Missense_Mutation_p.T54P|SLAMF6_uc010pjh.1_Intron|SLAMF6_uc010pji.1_Intron|SLAMF6_uc010pjj.1_Intron|SLAMF6_uc009wtm.1_Intron	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	54	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			AAAAGCCAAGTGATGAAGTTG	0.463000													48	135					0	0	0	0
SELP	6403	broad.mit.edu	37	1	169576215	169576215	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:169576215G>C	uc001ggi.3	-	9	1556	c.1491C>G	c.(1489-1491)AAC>AAG	p.N497K	SELP_uc001ggh.2_Missense_Mutation_p.N332K|SELP_uc009wvr.2_Missense_Mutation_p.N497K	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	497	Extracellular (Potential).|Sushi 5.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CAGAATTCCAGTTTCCAGTAG	0.453000													38	40					0	0	0	0
SMG7	9887	broad.mit.edu	37	1	183518407	183518407	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:183518407G>T	uc001gqg.2	+	18	2929	c.2807G>T	c.(2806-2808)GGA>GTA	p.G936V	SMG7_uc001gqf.2_Missense_Mutation_p.G940V|SMG7_uc001gqh.2_Missense_Mutation_p.G890V|SMG7_uc001gqi.2_Missense_Mutation_p.G848V|SMG7_uc010poc.1_Missense_Mutation_p.G944V	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	936	Ser-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCCCTCACCGGATTCTCTCTC	0.403000													18	26					0.000132079	0.000139972	1	0
CR1	1378	broad.mit.edu	37	1	207760880	207760880	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:207760880G>A	uc001hfy.2	+	26	4470	c.4330G>A	c.(4330-4332)GTC>ATC	p.V1444I	CR1_uc009xcl.1_Missense_Mutation_p.V994I|CR1_uc001hfx.2_Missense_Mutation_p.V1894I	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1444	Sushi 22.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGAAAACTTGGTCTGGTCAAG	0.388000													45	81					0	0	0	0
CD34	947	broad.mit.edu	37	1	208072364	208072364	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:208072364G>A	uc001hgw.1	-	3	728	c.470C>T	c.(469-471)CCC>CTC	p.P157L	CD34_uc001hgx.1_Missense_Mutation_p.P157L|CD34_uc010psj.1_Intron	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a	157	Extracellular (Potential).				cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						GGGTTTAGTGGGAGATGTTGC	0.468000													78	185					0	0	0	0
SLC30A1	7779	broad.mit.edu	37	1	211751730	211751730	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:211751730G>A	uc001hio.1	-	1	370	c.225C>T	c.(223-225)ATC>ATT	p.I75I		NM_021194	NP_067017	Q9Y6M5	ZNT1_HUMAN	solute carrier family 30 (zinc transporter),	75	Cytoplasmic (Potential).				cadmium ion transmembrane transport|cellular calcium ion homeostasis|cellular zinc ion homeostasis|negative regulation of calcium ion import|negative regulation of neurotransmitter secretion|negative regulation of zinc ion import	integral to membrane|T-tubule	calcium channel inhibitor activity|zinc ion transmembrane transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(81;0.00535)|GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.0604)|Epithelial(68;0.0978)		CCTCGGCTCGGATCCAGCCGA	0.662000													16	20					0	0	0	0
AIDA	64853	broad.mit.edu	37	1	222843263	222843263	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:222843263T>C	uc001hnn.2	-	10	1098	c.893A>G	c.(892-894)CAT>CGT	p.H298R	AIDA_uc001hno.2_RNA|AIDA_uc010pus.1_Missense_Mutation_p.H274R	NM_022831	NP_073742	Q96BJ3	AIDA_HUMAN	axin interactor, dorsalization associated	298					dorsal/ventral pattern formation|negative regulation of JNK cascade|negative regulation of JUN kinase activity|regulation of protein homodimerization activity						0						TTGATGTAGATGAAGATAAAG	0.353000													18	31					0	0	0	0
ZNF678	339500	broad.mit.edu	37	1	227842404	227842404	+	Silent	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:227842404A>G	uc001hqw.1	+	4	798	c.453A>G	c.(451-453)AAA>AAG	p.K151K	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	206					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				CTGGAGAGAAACCCTACAAAT	0.353000													26	78					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237802492	237802492	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:237802492G>T	uc001hyl.1	+	46	7226	c.7106G>T	c.(7105-7107)AGT>ATT	p.S2369I		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2369	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGCGGATCCAGTAAAACACTG	0.418000													7	20					2.0095e-06	2.19068e-06	1	0
OR2T3	343173	broad.mit.edu	37	1	248636651	248636651	+	5'Flank	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:248636651C>T	uc001iel.1	+							NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTGAGCCAGTCATGTGCTCAG	0.443000													15	81					0	0	0	0
ITGA8	8516	broad.mit.edu	37	10	15726024	15726024	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:15726024C>A	uc001ioc.1	-	4	547	c.547G>T	c.(547-549)GAG>TAG	p.E183*	ITGA8_uc010qcb.1_Nonsense_Mutation_p.E183*	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	183	Extracellular (Potential).|FG-GAP 2.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GGAGAGAACTCGGCATAGGCG	0.458000													16	42					3.45872e-05	3.70975e-05	1	0
C10orf140	387640	broad.mit.edu	37	10	21804965	21804965	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:21804965C>G	uc009xkd.2	-	4	4040	c.1787G>C	c.(1786-1788)CGA>CCA	p.R596P	uc001iqp.1_Intron	NM_207371	NP_997254	Q1XH10	DLN1_HUMAN	hypothetical protein LOC387640	515						nucleus	nucleotide binding			ovary(1)	1						CCTAGCCTCTCGGAGTATTCT	0.438000													16	81					0	0	0	0
ANKRD26	22852	broad.mit.edu	37	10	27366291	27366291	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:27366291C>T	uc001ith.2	-	9	1225	c.1053G>A	c.(1051-1053)TCG>TCA	p.S351S	ANKRD26_uc001itg.2_Silent_p.S70S|ANKRD26_uc009xku.1_Silent_p.S351S	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	351						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						GGTTTGCTAACGACTTGTGGG	0.383000													38	58					0	0	0	0
ARMC4	55130	broad.mit.edu	37	10	28196653	28196653	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:28196653G>A	uc009xky.2	-	17	2647	c.2549C>T	c.(2548-2550)CCT>CTT	p.P850L	ARMC4_uc010qds.1_Missense_Mutation_p.P375L|ARMC4_uc010qdt.1_Missense_Mutation_p.P542L|ARMC4_uc001itz.2_Missense_Mutation_p.P850L	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	850	ARM 6.						binding			ovary(4)|skin(2)	6						GTCTGGGTGAGGATTTTTCAG	0.443000													18	40					0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43650762	43650762	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:43650762G>A	uc001jan.2	+	2	500	c.165G>A	c.(163-165)GAG>GAA	p.E55E	CSGALNACT2_uc001jam.1_Silent_p.E55E	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	55	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						ATGGTAAAGAGTATTATCAAG	0.418000													15	44					0	0	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999149	46999149	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:46999149G>C	uc001jec.2	+	3	404	c.269G>C	c.(268-270)TGG>TCG	p.W90S	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	90											0						GGAGGCCACTGGTGGAGCAGC	0.667000													9	58					0	0	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70962246	70962246	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:70962246C>G	uc001jpe.1	+	12	1625	c.1570C>G	c.(1570-1572)CTC>GTC	p.L524V	SUPV3L1_uc010qjd.1_Missense_Mutation_p.L393V	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	524					DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						TGCCTACCATCTCCCTGATGC	0.373000													23	53					0	0	0	0
HTR7	3363	broad.mit.edu	37	10	92509226	92509226	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:92509226G>C	uc001kha.2	-	2	908	c.665C>G	c.(664-666)GCT>GGT	p.A222G	HTR7_uc001kgz.2_Missense_Mutation_p.A222G|HTR7_uc001khb.2_Missense_Mutation_p.A222G	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	222	Helical; Name=4; (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	TACATTCTGAGCCCATCCAAA	0.483000													40	58					0	0	0	0
CASP7	840	broad.mit.edu	37	10	115481445	115481445	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:115481445G>A	uc001lan.2	+	4	457	c.283G>A	c.(283-285)GAG>AAG	p.E95K	CASP7_uc001lam.2_Missense_Mutation_p.E95K|CASP7_uc001lao.2_Missense_Mutation_p.E128K|CASP7_uc001lap.2_Missense_Mutation_p.E95K|CASP7_uc001laq.2_Missense_Mutation_p.E95K|CASP7_uc010qsa.1_Missense_Mutation_p.E180K|CASP7_uc010qsb.1_Missense_Mutation_p.E70K	NM_033339	NP_203125	P55210	CASP7_HUMAN	caspase 7 isoform alpha	95					activation of caspase activity by cytochrome c|cellular component disassembly involved in apoptosis|induction of apoptosis by intracellular signals|proteolysis	cytosol|endoplasmic reticulum membrane|mitochondrial membrane|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0946)|Breast(234;0.188)		Epithelial(162;0.012)|all cancers(201;0.014)		CAAAGATGCCGAGGCGCTCTT	0.502000													39	71					0	0	0	0
MMP21	118856	broad.mit.edu	37	10	127462419	127462420	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:127462419_127462420GA>TT	uc001liu.2	-	2	677_678	c.677_678TC>AA	c.(676-678)ATC>AAA	p.I226K		NM_147191	NP_671724	Q8N119	MMP21_HUMAN	matrix metalloproteinase 21 preproprotein	226					proteolysis	extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				AGCCCAGCTTGATGTCGACCGC	0.728000													23	40					0	0	0	0
SAA4	6291	broad.mit.edu	37	11	18257396	18257396	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:18257396C>T	uc001mny.2	-	2	174	c.78G>A	c.(76-78)AAG>AAA	p.K26K		NM_006512	NP_006503	P35542	SAA4_HUMAN	serum amyloid A4, constitutive precursor	26					acute-phase response	high-density lipoprotein particle					0						GGAGAGCCTCCTTGAAAAACG	0.493000													24	79					0	0	0	0
NAV2	89797	broad.mit.edu	37	11	20083856	20083856	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:20083856A>G	uc010rdm.1	+	22	5364	c.5003A>G	c.(5002-5004)CAT>CGT	p.H1668R	NAV2_uc001mpp.2_Missense_Mutation_p.H1548R|NAV2_uc001mpr.3_Missense_Mutation_p.H1612R|NAV2_uc001mpt.2_Missense_Mutation_p.H661R|NAV2_uc009yhx.2_Missense_Mutation_p.H676R|NAV2_uc009yhy.1_Missense_Mutation_p.H574R|NAV2_uc009yhz.2_Missense_Mutation_p.H257R|NAV2_uc001mpu.2_Missense_Mutation_p.H50R	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	1668	Ser-rich.					nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						TTAATAGTTCATGGATCCTCA	0.423000													11	50					0	0	0	0
TRIM48	79097	broad.mit.edu	37	11	55032387	55032387	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:55032387C>T	uc010rid.1	+	2	142	c.56C>T	c.(55-57)TCT>TTT	p.S19F		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	3						intracellular	zinc ion binding				0						AACATGAATTCTGGAATCTCG	0.463000													89	188					0	0	0	0
OR5D16	390144	broad.mit.edu	37	11	55606573	55606573	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:55606573C>G	uc010rio.1	+	1	346	c.346C>G	c.(346-348)CTA>GTA	p.L116V		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TGAATTAATTCTATTTGCGGT	0.438000													47	84					0	0	0	0
SYVN1	84447	broad.mit.edu	37	11	64897499	64897499	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:64897499C>A	uc001odb.2	-	13	1477	c.1383G>T	c.(1381-1383)ATG>ATT	p.M461I	SYVN1_uc001odc.2_Missense_Mutation_p.M460I|SYVN1_uc009yqc.2_Missense_Mutation_p.M409I	NM_172230	NP_757385	Q86TM6	SYVN1_HUMAN	synoviolin 1 isoform b	461	Pro-rich.|Cytoplasmic (Potential).				ER-associated protein catabolic process|response to stress	endoplasmic reticulum membrane|integral to membrane|nucleus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(1)	1						GGGGCATACCCATCCAGGGAG	0.647000													7	14					5.18039e-06	5.62442e-06	1	0
SERPINH1	871	broad.mit.edu	37	11	75277799	75277799	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:75277799C>T	uc001owr.2	+	2	634	c.405C>T	c.(403-405)TAC>TAT	p.Y135Y	SERPINH1_uc009yuf.2_Silent_p.Y135Y|SERPINH1_uc009yug.2_Silent_p.Y135Y|SERPINH1_uc001ows.2_Silent_p.Y135Y|SERPINH1_uc001owt.2_5'Flank	NM_001235	NP_001226	P50454	SERPH_HUMAN	serine (or cysteine) proteinase inhibitor, clade	135					regulation of proteolysis|response to unfolded protein	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	collagen binding|serine-type endopeptidase inhibitor activity			ovary(2)	2	Ovarian(111;0.11)					GCCGACTGTACGGACCCAGCT	0.642000													16	25					0	0	0	0
UBE4A	9354	broad.mit.edu	37	11	118267058	118267059	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:118267058_118267059CC>TT	uc001psw.2	+	20	3233_3234	c.3104_3105CC>TT	c.(3103-3105)CCC>CTT	p.P1035L	UBE4A_uc001psv.2_Missense_Mutation_p.P1042L	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	1035	U-box.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		AACCGTAGTCCCCTCACCATGG	0.421000													23	42					0	0	0	0
SORL1	6653	broad.mit.edu	37	11	121444948	121444948	+	Splice_Site	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:121444948A>T	uc001pxx.2	+	24	3418	c.3338_splice	c.e24-2	p.P1113_splice	SORL1_uc010rzp.1_5'Flank	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class						cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ATCCCATTTTAGCTACCACCA	0.418000													52	107					0	0	0	0
HSPA8	3312	broad.mit.edu	37	11	122928593	122928593	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:122928593T>A	uc001pyo.2	-	9	1868	c.1790A>T	c.(1789-1791)AAA>ATA	p.K597I	HSPA8_uc009zbc.2_Missense_Mutation_p.K361I|HSPA8_uc001pyp.2_Intron|HSPA8_uc010rzu.1_Missense_Mutation_p.K520I	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	597					cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CTCCAGCTCTTTCTGTTGATG	0.463000													53	88					0	0	0	0
OR10S1	219873	broad.mit.edu	37	11	123847492	123847492	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:123847492T>A	uc001pzm.1	-	1	907	c.907A>T	c.(907-909)ACT>TCT	p.T303S		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	303	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TTCCGCAAAGTGTAAATGAAT	0.537000													43	83					0	0	0	0
Unknown	0	broad.mit.edu	37	11	124120549	124120549	+	IGR	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:124120549C>T								OR8G2 (24239 upstream) : OR8D1 (59188 downstream)																							GGTGGGCAACCTGGGCATGAC	0.522000													40	79					0	0	0	0
APLP2	334	broad.mit.edu	37	11	130005458	130005458	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr11:130005458A>G	uc010sby.1	+	13	1842	c.1685A>G	c.(1684-1686)GAT>GGT	p.D562G	APLP2_uc001qfp.2_Missense_Mutation_p.D562G|APLP2_uc001qfq.2_Missense_Mutation_p.D506G|APLP2_uc010sbz.1_Missense_Mutation_p.D350G|APLP2_uc001qfr.2_Missense_Mutation_p.D328G|APLP2_uc001qfs.2_Missense_Mutation_p.D333G|APLP2_uc001qfv.2_Missense_Mutation_p.D453G	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	562	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		TCTTCATCAGATGAGCTCCTT	0.587000													45	83					0	0	0	0
PLBD1	79887	broad.mit.edu	37	12	14706306	14706306	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:14706306C>G	uc001rcc.1	-	2	317	c.156G>C	c.(154-156)AAG>AAC	p.K52N		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	52					lipid catabolic process	extracellular region	hydrolase activity				0						CTTGTACTGTCTTTTCAGCAG	0.413000													26	38					0	0	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21467564	21467564	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:21467564C>G	uc001rer.2	-	3	505	c.254G>C	c.(253-255)AGA>ACA	p.R85T	SLCO1A2_uc001res.2_Missense_Mutation_p.R85T|SLCO1A2_uc010siq.1_Intron|SLCO1A2_uc010sio.1_Intron|SLCO1A2_uc010sip.1_Intron|SLCO1A2_uc001ret.2_Missense_Mutation_p.R83T|SLCO1A2_uc001reu.2_Missense_Mutation_p.R65T	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	85	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CATTATAGGTCTATGCAGTTT	0.328000													19	41					0	0	0	0
ITPR2	3709	broad.mit.edu	37	12	26808679	26808679	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:26808679G>A	uc001rhg.2	-	20	2968	c.2551C>T	c.(2551-2553)CCT>TCT	p.P851S		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	851	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TCCCCAAAAGGAAAGGGCTGG	0.338000													37	61					0	0	0	0
FKBP11	51303	broad.mit.edu	37	12	49319149	49319149	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:49319149C>A	uc001rsp.2	-	1	182	c.63G>T	c.(61-63)GCG>GCT	p.A21A	FKBP11_uc010sma.1_5'Flank|FKBP11_uc001rsq.3_Silent_p.A21A|FKBP11_uc010smb.1_Silent_p.A21A	NM_016594	NP_057678	Q9NYL4	FKB11_HUMAN	FK506 binding protein 11 isoform 1 precursor	21					protein folding	integral to membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						CCCGGCACACCGCCGCACTGa	0.632000													3	25					0.00909568	0.00948804	1	0
KRT78	196374	broad.mit.edu	37	12	53241878	53241878	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:53241878C>T	uc001sbc.1	-	2	476	c.412G>A	c.(412-414)GTC>ATC	p.V138I		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	138	Coil 1A.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						GTCTCCAGGACCTTGTTCTGC	0.597000													11	32					0	0	0	0
MYO1A	4640	broad.mit.edu	37	12	57431381	57431381	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:57431381C>G	uc001smw.3	-	19	2249	c.2006G>C	c.(2005-2007)GGG>GCG	p.G669A	MYO1A_uc010sqz.1_Missense_Mutation_p.G507A|MYO1A_uc009zpd.2_Missense_Mutation_p.G669A	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	669	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GGCCAGCTCCCCCGAGGACAT	0.512000													107	229					0	0	0	0
OS9	10956	broad.mit.edu	37	12	58088661	58088661	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:58088661G>A	uc001spj.2	+	2	350	c.291G>A	c.(289-291)GGG>GGA	p.G97G	OS9_uc010srx.1_Silent_p.G97G|OS9_uc001spk.2_Silent_p.G97G|OS9_uc001spl.2_Silent_p.G97G|OS9_uc001spm.2_Silent_p.G97G|OS9_uc001spn.2_Silent_p.G97G|OS9_uc010sry.1_Silent_p.G97G|OS9_uc010srz.1_Intron	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	97					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			AAGGGCCTGGGATCCCTGAGT	0.522000													20	41					0	0	0	0
MIR26A2	407016	broad.mit.edu	37	12	58218400	58218400	+	RNA	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:58218400C>G	hsa-mir-26a-2|MI0000750	-			c.76C>G			CTDSP2_uc010ssg.1_5'Flank|CTDSP2_uc009zqf.2_Intron|CTDSP2_uc001sqm.2_Intron|CTDSP2_uc009zqg.2_Intron|uc001sqn.2_RNA																	0						TCAGCTGCCTCCAGAAACAAG	0.532000													15	20					0	0	0	0
SRGAP1	57522	broad.mit.edu	37	12	64521813	64521813	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:64521813G>A	uc010ssp.1	+	21	2769	c.2713G>A	c.(2713-2715)GAC>AAC	p.D905N	SRGAP1_uc001srv.2_Missense_Mutation_p.D842N	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	905					axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		CCTCAACAATGACAGTCCTGA	0.617000													31	54					0	0	0	0
PTPRB	5787	broad.mit.edu	37	12	71002999	71002999	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:71002999T>G	uc001swb.3	-	2	205	c.175A>C	c.(175-177)AGC>CGC	p.S59R	PTPRB_uc010sto.1_Missense_Mutation_p.S59R|PTPRB_uc010stp.1_Missense_Mutation_p.S59R|PTPRB_uc001swc.3_Missense_Mutation_p.S277R|PTPRB_uc001swa.3_Missense_Mutation_p.S277R|PTPRB_uc001swd.3_Missense_Mutation_p.S276R|PTPRB_uc009zrr.1_Missense_Mutation_p.S156R|PTPRB_uc001swe.2_Missense_Mutation_p.S277R	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	59	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GTGTCACTGCTATAGATGAGG	0.498000													3	67					0	0	0	0
ANO4	121601	broad.mit.edu	37	12	101520815	101520815	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:101520815G>C	uc010svm.1	+	27	3407	c.2835G>C	c.(2833-2835)AAG>AAC	p.K945N	ANO4_uc001thw.2_Missense_Mutation_p.K910N|ANO4_uc001thx.2_Missense_Mutation_p.K945N|ANO4_uc001thy.2_Missense_Mutation_p.K465N	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	945	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AGAGGAAGAAGAATGGAAAAG	0.488000										HNSCC(74;0.22)			6	16					0	0	0	0
SELPLG	6404	broad.mit.edu	37	12	109017613	109017613	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:109017613C>T	uc001tni.2	-	2	631	c.471G>A	c.(469-471)ACG>ACA	p.T157T	SELPLG_uc001tnh.2_Silent_p.T147T|SELPLG_uc010sxe.1_Silent_p.T173T	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	157	Extracellular (Potential).|12 X 10 AA tandem repeats.				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						CCTCCGTGGCCGTCAGTCGAG	0.637000													53	78					0	0	0	0
CUX2	23316	broad.mit.edu	37	12	111746236	111746236	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:111746236G>A	uc001tsa.1	+	14	1317	c.1164G>A	c.(1162-1164)ATG>ATA	p.M388I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	388						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CCTAGGGCATGGCCAAGCCTG	0.612000													18	27					0	0	0	0
RNF10	9921	broad.mit.edu	37	12	121000765	121000765	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:121000765G>T	uc001typ.3	+	8	1629	c.1146G>T	c.(1144-1146)CTG>CTT	p.L382L	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Silent_p.L288L	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	382					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAGAGGCTCTGTCGGGATTGG	0.537000													30	48					6.00712e-18	7.32979e-18	1	0
HNF1A	6927	broad.mit.edu	37	12	121434487	121434487	+	Silent	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:121434487T>A	uc001tzg.2	+	6	1274	c.1251T>A	c.(1249-1251)GGT>GGA	p.G417G	HNF1A_uc001tze.1_Silent_p.G417G|HNF1A_uc001tzf.2_Silent_p.G417G|HNF1A_uc010szn.1_Silent_p.G417G	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	417					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCGGGCCTGGTGAGCCTGCCT	0.632000									Hepatic_Adenoma_Familial_Clustering_of				19	32					0	0	0	0
WDR66	144406	broad.mit.edu	37	12	122361573	122361573	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:122361573G>A	uc009zxk.2	+	3	566	c.424G>A	c.(424-426)GAT>AAT	p.D142N		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	142							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		ACAATTGGAGGATGCAGAAAC	0.363000													23	61					0	0	0	0
POLE	5426	broad.mit.edu	37	12	133249289	133249289	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:133249289T>C	uc001uks.1	-	15	1654	c.1610A>G	c.(1609-1611)GAG>GGG	p.E537G	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.E510G	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	537					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GACGTAGGTCTCAGAGTCCAG	0.577000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					31	64					0	0	0	0
RNF17	56163	broad.mit.edu	37	13	25448319	25448319	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:25448319A>T	uc001upr.2	+	33	4556	c.4515A>T	c.(4513-4515)GAA>GAT	p.E1505D	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E1501D|RNF17_uc001ups.2_Missense_Mutation_p.E1444D|RNF17_uc010aac.2_Missense_Mutation_p.E697D|RNF17_uc010aad.2_Missense_Mutation_p.E515D	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1505	Tudor 4.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CCATTAAAGAATTTAATCCTT	0.328000													31	36					0	0	0	0
N4BP2L2	10443	broad.mit.edu	37	13	33111164	33111164	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:33111164T>A	uc001uuk.3	-	2	179	c.1A>T	c.(1-3)ATG>TTG	p.M1L	N4BP2L2_uc010abe.1_Missense_Mutation_p.M1L|N4BP2L2_uc010tdz.1_Intron|N4BP2L2_uc001uul.1_Missense_Mutation_p.M1L|N4BP2L2_uc001uum.2_5'Flank	NM_014887	NP_055702	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5	1											0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		CCATAAGACATCTGAGAAATA	0.284000													10	14					0	0	0	0
NBEA	26960	broad.mit.edu	37	13	35619136	35619137	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:35619136_35619137GG>AA	uc001uvb.2	+	4	785_786	c.579_580GG>AA	c.(577-582)AAGGAG>AAAAAG	p.E194K		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	194						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCACTGTCAAGGAGTTGAAGCT	0.416000													9	14					0	0	0	0
PCDH8	5100	broad.mit.edu	37	13	53419596	53419596	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:53419596C>T	uc001vhi.2	-	2	3006	c.2803G>A	c.(2803-2805)GCT>ACT	p.A935T	PCDH8_uc001vhj.2_Missense_Mutation_p.A838T	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	935	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		TTTTTCAGAGCGTCCCCGCTG	0.522000													7	74					0	0	0	0
MYCBP2	23077	broad.mit.edu	37	13	77632376	77632376	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:77632376G>A	uc001vkf.2	-	79	13283	c.13192C>T	c.(13192-13194)CTC>TTC	p.L4398F	MYCBP2_uc010aev.2_Missense_Mutation_p.L3802F|MYCBP2_uc001vke.2_Missense_Mutation_p.L1015F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4398	RING-type; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GCTGCCGAGAGCGCTTCGGTG	0.458000													49	105					0	0	0	0
SLITRK5	26050	broad.mit.edu	37	13	88329860	88329860	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:88329860C>A	uc001vln.2	+	2	2436	c.2217C>A	c.(2215-2217)CCC>CCA	p.P739P	SLITRK5_uc010tic.1_Silent_p.P498P	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	739	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CCGCGCTGCCCAAGGTGAAGA	0.667000													37	101					1.90571e-15	2.27318e-15	1	0
GPC6	10082	broad.mit.edu	37	13	95055462	95055462	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:95055462G>T	uc001vlt.2	+	9	2291	c.1659G>T	c.(1657-1659)CTG>CTT	p.L553L		NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	553						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				TGCAGAGACTGTGCAGATAAT	0.517000													6	41					8.12818e-05	8.64839e-05	1	0
DOCK9	23348	broad.mit.edu	37	13	99566619	99566619	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:99566619C>T	uc001vnt.2	-	9	981	c.926G>A	c.(925-927)GGT>GAT	p.G309D	DOCK9_uc001vnw.2_Missense_Mutation_p.G308D|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.G309D|DOCK9_uc010tis.1_Missense_Mutation_p.G308D|DOCK9_uc010tit.1_Missense_Mutation_p.G309D|DOCK9_uc010afu.1_Missense_Mutation_p.G124D	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	309					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TAAACCGGAACCAGAACCTTC	0.393000													5	13					0	0	0	0
MYO16	23026	broad.mit.edu	37	13	109475526	109475526	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:109475526T>A	uc001vqt.1	+	9	1057	c.931T>A	c.(931-933)TGG>AGG	p.W311R	MYO16_uc010agk.1_Missense_Mutation_p.W333R|MYO16_uc001vqu.1_Missense_Mutation_p.W111R	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	311					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CGAAATTGCCTGGGAAGAAAA	0.393000													48	141					0	0	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111919973	111919973	+	Silent	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:111919973T>C	uc001vrs.2	+	10	1342	c.1092T>C	c.(1090-1092)TAT>TAC	p.Y364Y	ARHGEF7_uc001vrr.2_Silent_p.Y343Y|ARHGEF7_uc001vrt.2_Silent_p.Y314Y|ARHGEF7_uc010tjn.1_RNA|ARHGEF7_uc001vru.1_Silent_p.Y186Y|ARHGEF7_uc001vrv.3_Silent_p.Y186Y|ARHGEF7_uc001vrw.3_Silent_p.Y186Y|ARHGEF7_uc001vrx.3_Silent_p.Y186Y|ARHGEF7_uc010tjo.1_Silent_p.Y261Y|ARHGEF7_uc010tjp.1_Silent_p.Y108Y|ARHGEF7_uc010agn.1_Silent_p.Y108Y	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	364	DH.				apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			ACCTCACGTATTGTGCCAATC	0.532000													30	60					0	0	0	0
OR11H4	390442	broad.mit.edu	37	14	20711094	20711094	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:20711094C>T	uc010tld.1	+	1	144	c.144C>T	c.(142-144)ACC>ACT	p.T48T		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		ATGTCTTGACCTTGCTGGGAA	0.443000													30	60					0	0	0	0
TOX4	9878	broad.mit.edu	37	14	21955828	21955828	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:21955828G>A	uc001waz.2	+	3	397	c.294G>A	c.(292-294)GGG>GGA	p.G98G	TOX4_uc001way.2_5'UTR|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Silent_p.G75G|TOX4_uc010tlv.1_Intron	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	98						chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		AGGGCGGGGGGCTCCTGAGTG	0.557000													35	55					0	0	0	0
CTAGE5	4253	broad.mit.edu	37	14	39764138	39764138	+	Missense_Mutation	SNP	A	G	G	rs150627486	byFrequency	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:39764138A>G	uc001wvg.3	+	8	913	c.577A>G	c.(577-579)ACC>GCC	p.T193A	CTAGE5_uc010tqe.1_Missense_Mutation_p.T155A|CTAGE5_uc001wuz.3_Missense_Mutation_p.T181A|CTAGE5_uc001wuy.3_Missense_Mutation_p.T113A|CTAGE5_uc001wvb.3_Missense_Mutation_p.T164A|CTAGE5_uc001wvc.3_Missense_Mutation_p.T138A|CTAGE5_uc001wva.3_Missense_Mutation_p.T164A|CTAGE5_uc001wve.1_Missense_Mutation_p.T169A|CTAGE5_uc001wvh.3_Missense_Mutation_p.T193A|CTAGE5_uc001wvf.3_Missense_Mutation_p.T118A|CTAGE5_uc001wvi.3_Missense_Mutation_p.T198A|CTAGE5_uc010amz.2_5'UTR|CTAGE5_uc001wvj.3_Missense_Mutation_p.T164A	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	193	Potential.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		GGCCAAAATGACCTTCAAGAT	0.313000													4	88					0	0	0	0
NIN	51199	broad.mit.edu	37	14	51259494	51259494	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:51259494G>A	uc001wym.2	-	5	562	c.371C>T	c.(370-372)ACG>ATG	p.T124M	NIN_uc001wyi.2_Missense_Mutation_p.T124M|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.T124M|NIN_uc010tqp.1_Missense_Mutation_p.T130M|NIN_uc001wyo.2_Missense_Mutation_p.T124M|NIN_uc001wyp.1_Missense_Mutation_p.T86M	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	124					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					CTCAATCACCGTCACTTCAGG	0.542000			T	PDGFRB	MPD								26	45					0	0	0	0
PRKCH	5583	broad.mit.edu	37	14	61917604	61917604	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:61917604C>T	uc001xfn.2	+	6	1052	c.747C>T	c.(745-747)AGC>AGT	p.S249S	PRKCH_uc010tsa.1_Silent_p.S88S	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	249	Phorbol-ester/DAG-type 2.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		ACAAGTTCAGCATCCACAACT	0.438000													23	38					0	0	0	0
ALKBH1	8846	broad.mit.edu	37	14	78161201	78161201	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:78161201C>T	uc001xuc.1	-	3	344	c.335G>A	c.(334-336)TGG>TAG	p.W112*	ALKBH1_uc001xud.1_Intron	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	112					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		CACCCAGTGCCACTGGTAACC	0.418000													27	51					0	0	0	0
RCOR1	23186	broad.mit.edu	37	14	103148296	103148296	+	Silent	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:103148296A>G	uc001ymb.2	+	3	417	c.417A>G	c.(415-417)CAA>CAG	p.Q139Q		NM_015156	NP_055971	Q9UKL0	RCOR1_HUMAN	REST corepressor 1	139	Interaction with HDAC1.|ELM2.				blood coagulation|histone H4 deacetylation|interspecies interaction between organisms	transcriptional repressor complex	protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription regulatory region DNA binding			ovary(1)	1						CACCCAATCAAAATCTGTCAG	0.373000													13	18					0	0	0	0
KIAA0284	283638	broad.mit.edu	37	14	105361169	105361169	+	Silent	SNP	A	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:105361169A>C	uc010axb.2	+	19	4763	c.4539A>C	c.(4537-4539)TCA>TCC	p.S1513S	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Silent_p.S1443S|KIAA0284_uc001yps.2_Silent_p.S1454S|KIAA0284_uc001ypt.2_Silent_p.S181S	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	1548						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		GCCCACCCTCACCCGCCTCAG	0.711000													11	18					0	0	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890016	23890016	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:23890016C>T	uc001ywj.3	-	1	1160	c.1065G>A	c.(1063-1065)TGG>TGA	p.W355*		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		TGGGCCCTTCCCAGCCACTCA	0.672000													19	29					0	0	0	0
C15orf55	256646	broad.mit.edu	37	15	34640628	34640628	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:34640628C>T	uc001zif.2	+	2	630	c.475C>T	c.(475-477)CCG>TCG	p.P159S	C15orf55_uc010ucc.1_Missense_Mutation_p.P187S|C15orf55_uc010ucd.1_Missense_Mutation_p.P177S	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	159	Pro-rich.					cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		TCCAGGCCTTCCGCCTCAGCC	0.587000			T	BRD3|BRD4	lethal midline carcinoma								11	28					0	0	0	0
TMEM87A	25963	broad.mit.edu	37	15	42560198	42560198	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:42560198T>C	uc010udd.1	-	3	397	c.238A>G	c.(238-240)ATA>GTA	p.I80V	TMEM87A_uc001zpf.3_Missense_Mutation_p.I19V|TMEM87A_uc010bcu.1_Missense_Mutation_p.I19V|TMEM87A_uc001zpg.2_Missense_Mutation_p.I80V	NM_015497	NP_056312	Q8NBN3	TM87A_HUMAN	transmembrane protein 87A isoform 1	80						integral to membrane				ovary(1)	1		all_cancers(109;4.28e-16)|all_epithelial(112;1.04e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;1.03e-06)		TACCAGGTTATATTCAAAGAC	0.259000													25	46					0	0	0	0
TRPM7	54822	broad.mit.edu	37	15	50906377	50906378	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:50906377_50906378GC>AT	uc001zyt.3	-	14	1841_1842	c.1577_1578GC>AT	c.(1576-1578)TGC>TAT	p.C526Y	TRPM7_uc010bew.1_Missense_Mutation_p.C526Y|TRPM7_uc001zyu.2_Missense_Mutation_p.C84Y	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	526	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TAGTATAGGTGCATCTGTAGGT	0.327000													18	38					0	0	0	0
NARG2	79664	broad.mit.edu	37	15	60741642	60741642	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:60741642C>G	uc002agp.2	-	10	1759	c.1524G>C	c.(1522-1524)TTG>TTC	p.L508F	NARG2_uc002ago.2_Missense_Mutation_p.L371F|NARG2_uc002agq.3_Missense_Mutation_p.L176F	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	508						nucleus				ovary(1)|lung(1)	2						CAGATGTTTTCAAGTCACTAT	0.333000													28	51					0	0	0	0
C15orf39	56905	broad.mit.edu	37	15	75498857	75498857	+	Silent	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:75498857T>C	uc002azp.3	+	2	788	c.468T>C	c.(466-468)GAT>GAC	p.D156D	C15orf39_uc002azq.3_Silent_p.D156D|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	156											0						GGCCACTGGATGTTGACTGGA	0.622000													37	66					0	0	0	0
CSPG4	1464	broad.mit.edu	37	15	75983101	75983101	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:75983101G>A	uc002baw.2	-	3	398	c.305C>T	c.(304-306)ACG>ATG	p.T102M		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	102	Extracellular (Potential).|Globular or compact configuration stabilized by disulfide bonds.|Laminin G-like 1.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						ACTCAGCAGCGTCTCTGCTGG	0.582000													29	66					0	0	0	0
XYLT1	64131	broad.mit.edu	37	16	17292261	17292261	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr16:17292261T>A	uc002dfa.2	-	5	1182	c.1097A>T	c.(1096-1098)TAC>TTC	p.Y366F		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	366	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CCGATGCAGGTAATTAGAGCG	0.587000													10	17					0	0	0	0
ACSM3	6296	broad.mit.edu	37	16	20797459	20797459	+	Silent	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr16:20797459T>G	uc002dhr.2	+	9	1390	c.1203T>G	c.(1201-1203)CCT>CCG	p.P401P	ACSM3_uc002dhq.2_Silent_p.P401P|ACSM3_uc010vba.1_Silent_p.P430P|ERI2_uc002dhs.2_Intron	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	401					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						TGGGAAAACCTTCTCCTGCTT	0.388000													15	23					0	0	0	0
EARS2	124454	broad.mit.edu	37	16	23563530	23563530	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr16:23563530C>G	uc002dlt.3	-	2	267	c.235G>C	c.(235-237)GAT>CAT	p.D79H	EARS2_uc002dlr.3_5'Flank|EARS2_uc002dls.3_RNA|EARS2_uc002dlu.2_Missense_Mutation_p.D79H	NM_001083614	NP_001077083	Q5JPH6	SYEM_HUMAN	glutamyl-tRNA synthetase 2 precursor	79					glutamyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|glutamate-tRNA ligase activity|RNA binding				0				GBM - Glioblastoma multiforme(48;0.0353)	L-Glutamic Acid(DB00142)	CGAGTCTGATCTGTGTCCTCT	0.547000													35	71					0	0	0	0
MAZ	4150	broad.mit.edu	37	16	29820025	29820025	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr16:29820025C>G	uc002dty.2	+	4	1410	c.1242C>G	c.(1240-1242)AGC>AGG	p.S414R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAZ_uc002dtv.1_Intron|MAZ_uc010vdx.1_Missense_Mutation_p.S391R|MAZ_uc002dtw.2_Intron|MAZ_uc002dtx.2_Missense_Mutation_p.S414R|MAZ_uc010bzg.2_Missense_Mutation_p.S109R|MAZ_uc002dtz.1_3'UTR|MAZ_uc002dua.2_Missense_Mutation_p.S15R|MAZ_uc010vdy.1_Missense_Mutation_p.S15R|uc002duc.1_RNA	NM_002383	NP_002374	P56270	MAZ_HUMAN	MYC-associated zinc finger protein isoform 1	414					regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription|transcription initiation from RNA polymerase II promoter	nucleus	DNA binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1						AGGTGCACAGCCAGGGTCCTC	0.612000													12	18					0	0	0	0
FBXL19	54620	broad.mit.edu	37	16	30958233	30958233	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr16:30958233C>G	uc002eab.2	+	10	2028	c.1870C>G	c.(1870-1872)CCA>GCA	p.P624A	FBXL19_uc002dzz.1_Missense_Mutation_p.P312A|FBXL19_uc002eaa.1_Missense_Mutation_p.P523A|ORAI3_uc002eac.2_5'Flank	NM_001099784	NP_001093254	Q6PCT2	FXL19_HUMAN	F-box and leucine-rich repeat protein 19	624	LRR 4.						DNA binding|zinc ion binding			ovary(2)|lung(1)|breast(1)	4						CCCCACGTCCCCACTCCGCGA	0.682000													5	14					0	0	0	0
ACAP1	9744	broad.mit.edu	37	17	7251469	7251469	+	Silent	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:7251469C>G	uc002ggd.2	+	16	1643	c.1437C>G	c.(1435-1437)GTC>GTG	p.V479V		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	479	Arf-GAP.|Required for interaction with GULP1.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						TGGGAAATGTCATCATCAACC	0.617000													7	24					0	0	0	0
CNTROB	116840	broad.mit.edu	37	17	7839728	7839728	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:7839728G>C	uc002gjq.2	+	6	1558	c.639G>C	c.(637-639)GAG>GAC	p.E213D	CNTROB_uc002gjp.2_Missense_Mutation_p.E213D|CNTROB_uc002gjr.2_Missense_Mutation_p.E115D|CNTROB_uc010vum.1_5'Flank	NM_053051	NP_444279	Q8N137	CNTRB_HUMAN	centrobin, centrosomal BRCA2 interacting protein	213	Potential.				centriole replication|centrosome separation|cytokinesis	centriole	protein domain specific binding			breast(1)|central_nervous_system(1)	2		Prostate(122;0.173)				GAGTGTTAGAGCTACAGCAAC	0.527000													38	98					0	0	0	0
RASD1	51655	broad.mit.edu	37	17	17399294	17399294	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:17399294G>T	uc002gri.2	-	1	414	c.202C>A	c.(202-204)CGC>AGC	p.R68S		NM_016084	NP_057168	Q9Y272	RASD1_HUMAN	RAS, dexamethasone-induced 1 precursor	68					G-protein coupled receptor protein signaling pathway|small GTPase mediated signal transduction	nucleus|perinuclear region of cytoplasm|plasma membrane	GTP binding|GTPase activity				0						ACCTCGCCGCGGATGGAGTAG	0.672000													15	72					3.41278e-10	3.89614e-10	1	0
PRPSAP2	5636	broad.mit.edu	37	17	18833957	18833957	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:18833957C>T	uc002gup.1	+	12	1267	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	PRPSAP2_uc002guo.1_Silent_p.I266I|PRPSAP2_uc010vyi.1_Silent_p.I300I|PRPSAP2_uc010vyj.1_Silent_p.I266I|PRPSAP2_uc010vyk.1_Silent_p.I291I|PRPSAP2_uc002guq.1_Silent_p.I139I	NM_002767	NP_002758	O60256	KPRB_HUMAN	phosphoribosyl pyrophosphate	352					nucleotide biosynthetic process		enzyme inhibitor activity|magnesium ion binding|ribose phosphate diphosphokinase activity			skin(1)	1						TCCGTCGGATCCACAATGGGG	0.458000													12	23					0	0	0	0
CYTSB	92521	broad.mit.edu	37	17	20108048	20108048	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:20108048T>C	uc002gwq.2	+	4	831	c.686T>C	c.(685-687)CTT>CCT	p.L229P	CYTSB_uc010cqx.2_Missense_Mutation_p.L229P|CYTSB_uc002gwr.2_Missense_Mutation_p.L229P|CYTSB_uc002gws.2_Missense_Mutation_p.L229P|CYTSB_uc002gwv.2_Missense_Mutation_p.L148P|CYTSB_uc010vzf.1_Intron|CYTSB_uc002gww.2_Missense_Mutation_p.L5P|CYTSB_uc002gwt.2_Missense_Mutation_p.L148P|CYTSB_uc002gwu.2_Missense_Mutation_p.L148P	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	229						nucleus					0						ATAAGAGCTCTTGAGGAGAAG	0.478000													33	153					0	0	0	0
SEZ6	124925	broad.mit.edu	37	17	27283247	27283247	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:27283247C>G	uc002hdp.2	-	16	3076	c.2882G>C	c.(2881-2883)CGC>CCC	p.R961P	SEZ6_uc010crx.1_Intron|SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.R961P|SEZ6_uc002hdq.1_Missense_Mutation_p.R836P	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	961	Cytoplasmic (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			ggggcgggggcggggCAGCTG	0.478000													3	13					0	0	0	0
GGNBP2	79893	broad.mit.edu	37	17	34943490	34943490	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:34943490C>T	uc002hnb.2	+	13	1954	c.1705C>T	c.(1705-1707)CAC>TAC	p.H569Y		NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	569					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		AAATACCATGCACACAGTGTT	0.463000													14	64					0	0	0	0
KRT25	147183	broad.mit.edu	37	17	38910653	38910653	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:38910653T>G	uc002hve.2	-	2	558	c.497A>C	c.(496-498)GAT>GCT	p.D166A		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	166	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TCTGAAATCATCAGCTGTAAG	0.383000													29	67					0	0	0	0
PLEKHH3	79990	broad.mit.edu	37	17	40823110	40823111	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:40823110_40823111CC>GT	uc002iau.2	-	9	1789_1790	c.1322_1323GG>AC	c.(1321-1323)CGG>CAC	p.R441H	PLEKHH3_uc010cyl.1_Intron|PLEKHH3_uc002iat.1_RNA|PLEKHH3_uc002iav.2_RNA|PLEKHH3_uc010cym.1_Intron|PLEKHH3_uc002iaw.2_Missense_Mutation_p.R441H	NM_024927	NP_079203	Q7Z736	PKHH3_HUMAN	pleckstrin homology domain containing, family H	441	FERM.				signal transduction	cytoskeleton				large_intestine(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.14)		CGTTGCGGCTCCGGGCCAAGCC	0.663000													33	56					0	0	0	0
MARCH10	162333	broad.mit.edu	37	17	60821758	60821758	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:60821758C>A	uc010ddr.2	-	5	752	c.514G>T	c.(514-516)GTG>TTG	p.V172L	MARCH10_uc002jag.3_Missense_Mutation_p.V172L|MARCH10_uc010dds.2_Missense_Mutation_p.V210L|MARCH10_uc002jah.2_Missense_Mutation_p.V171L	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	172							ligase activity|zinc ion binding				0						GGAACCGGCACCTTTGCAGGC	0.557000													52	96					3.89483e-19	4.79641e-19	1	0
TEX2	55852	broad.mit.edu	37	17	62290905	62290905	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:62290905T>A	uc002jec.2	-	2	846	c.673A>T	c.(673-675)ACT>TCT	p.T225S	TEX2_uc002jed.2_Missense_Mutation_p.T225S|TEX2_uc002jee.2_Missense_Mutation_p.T225S	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	225					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		TGCCGGGAAGTGTCCGTGGAC	0.532000													41	58					0	0	0	0
SLC16A6	9120	broad.mit.edu	37	17	66267356	66267356	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:66267356G>A	uc002jgz.1	-	5	1133	c.945C>T	c.(943-945)ATC>ATT	p.I315I	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Silent_p.I315I	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6	315	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	CCAGAGGAATGATGTACAAGG	0.423000													12	24					0	0	0	0
MC5R	4161	broad.mit.edu	37	18	13826439	13826439	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr18:13826439C>A	uc010xaf.1	+	1	675	c.675C>A	c.(673-675)GCC>GCA	p.A225A		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	225	Cytoplasmic (Potential).			ALPGASSARQRTSM -> LCPGPALRGRGPAW (in Ref. 1).	G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						TGCCCGGGGCCAGCTCTGCGC	0.622000													87	179					3.56499e-28	4.45205e-28	1	0
ZNF521	25925	broad.mit.edu	37	18	22807174	22807174	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr18:22807174C>T	uc002kvk.2	-	4	955	c.708G>A	c.(706-708)AGG>AGA	p.R236R	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.R236R|ZNF521_uc002kvl.2_Silent_p.R16R	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	236					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					AGTCCTCCATCCTGGAACCGG	0.522000			T	PAX5	ALL								13	67					0	0	0	0
NARS	4677	broad.mit.edu	37	18	55283091	55283091	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr18:55283091C>A	uc002lgs.2	-	3	438	c.210G>T	c.(208-210)TGG>TGT	p.W70C	NARS_uc002lgt.2_Missense_Mutation_p.W69C|NARS_uc010xea.1_5'UTR|NARS_uc010xeb.1_RNA|NARS_uc010xec.1_Missense_Mutation_p.W70C|NARS_uc010xed.1_Missense_Mutation_p.W37C	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	70					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	GTTCCCTATGCCACATCTTTT	0.388000													22	55					1.87028e-06	2.0473e-06	1	0
LRG1	116844	broad.mit.edu	37	19	4538051	4538051	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:4538051C>T	uc002mau.2	-	2	956	c.945G>A	c.(943-945)CAG>CAA	p.Q315Q	PLIN5_uc002mas.2_5'Flank|PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	315	LRRCT.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTTTTGGGCCTGAAGCCAAC	0.592000													40	35					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9088493	9088493	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:9088493C>G	uc002mkp.2	-	1	3526	c.3322G>C	c.(3322-3324)GAT>CAT	p.D1108H		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1108	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGACATCATCAGAAAATGTG	0.443000													18	36					0	0	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10225320	10225320	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:10225320C>G	uc002mna.2	+	13	2291	c.2291C>G	c.(2290-2292)CCA>CGA	p.P764R	PPAN-P2RY11_uc010xla.1_3'UTR|P2RY11_uc002mnc.2_Missense_Mutation_p.P344R	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	Error:Variant_position_missing_in_Q9NQ55_after_alignment					RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			AGCTGGAACCCAGAGGACGCC	0.657000													14	50					0	0	0	0
ZNF763	284390	broad.mit.edu	37	19	12088200	12088200	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:12088200G>T	uc002msw.2	+	3	300	c.145G>T	c.(145-147)GAC>TAC	p.D49Y	ZNF763_uc010xmf.1_Missense_Mutation_p.D69Y|ZNF763_uc002msv.2_Missense_Mutation_p.D52Y|ZNF763_uc010xmg.1_Intron	NM_001012753	NP_001012771	Q0D2J5	ZN763_HUMAN	zinc finger protein 763	49	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						AAAGTGGAAAGACCAGAACAT	0.333000													18	32					2.35188e-11	2.70823e-11	1	0
SYDE1	85360	broad.mit.edu	37	19	15222125	15222125	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:15222125T>C	uc002nah.1	+	5	1323	c.1292T>C	c.(1291-1293)GTA>GCA	p.V431A	SYDE1_uc002nai.1_Missense_Mutation_p.V364A|SYDE1_uc002naj.1_Missense_Mutation_p.V88A	NM_033025	NP_149014	Q6ZW31	SYDE1_HUMAN	synapse defective 1, Rho GTPase, homolog 1	431	Rho-GAP.				activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|pancreas(1)	2						CACCCCCAGGTAGTGGGACTG	0.587000													33	22					0	0	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766741	19766741	+	Silent	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:19766741C>G	uc002nnh.3	-	9	1243	c.1215G>C	c.(1213-1215)CCG>CCC	p.P405P	ATP13A1_uc002nnf.3_5'Flank|ATP13A1_uc002nng.2_Silent_p.P287P	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	405	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding	p.?(1)		ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CGCTGTCAACCGCTGGGGAGA	0.652000													4	16					0	0	0	0
APLP1	333	broad.mit.edu	37	19	36368688	36368688	+	Missense_Mutation	SNP	G	A	A	rs142258705		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:36368688G>A	uc002oce.2	+	12	1651	c.1513G>A	c.(1513-1515)GAG>AAG	p.E505K	APLP1_uc010xsz.1_Missense_Mutation_p.E466K|APLP1_uc002ocf.2_Missense_Mutation_p.E505K|APLP1_uc002ocg.2_Missense_Mutation_p.E408K|APLP1_uc010xta.1_Missense_Mutation_p.E499K	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	505	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGCAGCAGCGAGGACAAGGG	0.582000													17	44					0	0	0	0
ZNF571	51276	broad.mit.edu	37	19	38057174	38057174	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:38057174C>T	uc002ogt.2	-	4	257	c.156G>A	c.(154-156)GTG>GTA	p.V52V	uc002ogm.2_Intron|uc002ogn.2_Intron|ZNF540_uc002ogo.2_Intron|ZNF540_uc002ogp.2_Intron|ZNF540_uc002ogq.2_Intron|ZNF571_uc002ogr.1_Intron|uc002ogs.1_5'Flank|ZNF571_uc010efp.2_Silent_p.V52V	NM_016536	NP_057620	Q7Z3V5	ZN571_HUMAN	zinc finger protein 571	52	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ACTTTTTGGTCACACAACTGG	0.338000													16	51					0	0	0	0
PSG6	5675	broad.mit.edu	37	19	43529018	43529018	+	Silent	SNP	G	A	A	rs138426313		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:43529018G>A	uc002ovh.1	-	2	362	c.273C>T	c.(271-273)GAC>GAT	p.D91D	PSG11_uc002ouw.2_Silent_p.D91D|PSG10_uc002ouv.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.D91D|PSG11_uc002ovm.1_Silent_p.D85D|PSG11_uc002ovn.1_Silent_p.D91D|PSG11_uc002ovo.1_Intron|PSG11_uc002ovp.1_Intron			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TTATTTGACCGTCTACTACAT	0.443000													56	179					0	0	0	0
TEX101	83639	broad.mit.edu	37	19	43920656	43920656	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:43920656T>C	uc010xwo.1	+	4	535	c.340T>C	c.(340-342)TGT>CGT	p.C114R	TEX101_uc002owk.2_Missense_Mutation_p.C132R	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	114						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				GGATTCCTTCTGTAATGACAA	0.507000													98	142					0	0	0	0
FOSB	2354	broad.mit.edu	37	19	45971882	45971882	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:45971882C>T	uc002pbx.3	+	1	630	c.38C>T	c.(37-39)TCC>TTC	p.S13F	ERCC1_uc002pbu.1_Intron|FOSB_uc002pbw.2_Missense_Mutation_p.S13F|FOSB_uc010eke.2_Missense_Mutation_p.S13F|FOSB_uc002pby.3_Missense_Mutation_p.S13F|FOSB_uc010eka.1_Missense_Mutation_p.S13F|FOSB_uc010ekb.1_Missense_Mutation_p.S13F|FOSB_uc010ekc.1_Missense_Mutation_p.S13F|FOSB_uc010ekf.2_Missense_Mutation_p.S13F|FOSB_uc010ekd.1_Missense_Mutation_p.S13F|FOSB_uc010ekg.2_Missense_Mutation_p.S13F|FOSB_uc002pca.3_5'Flank	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	13					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		GACTCCGGCTCCCGGTGCAGC	0.632000													56	66					0	0	0	0
RUVBL2	10856	broad.mit.edu	37	19	49497072	49497072	+	5'Flank	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:49497072C>G	uc002plr.1	+						GYS1_uc010xzy.1_5'Flank|GYS1_uc002plp.2_5'Flank|GYS1_uc010emm.2_5'Flank|GYS1_uc010xzz.1_5'Flank|GYS1_uc010yaa.1_5'Flank|RUVBL2_uc002plq.1_Translation_Start_Site|RUVBL2_uc010yab.1_5'Flank|RUVBL2_uc002pls.1_5'Flank|RUVBL2_uc010emn.1_5'Flank|RUVBL2_uc010yac.1_5'Flank	NM_006666	NP_006657	Q9Y230	RUVB2_HUMAN	RuvB-like 2						cellular response to UV|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|protein folding|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex|membrane|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|ATP-dependent DNA helicase activity|damaged DNA binding|identical protein binding|unfolded protein binding				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000449)|OV - Ovarian serous cystadenocarcinoma(262;0.000555)|GBM - Glioblastoma multiforme(486;0.00585)|Epithelial(262;0.047)		GAGGAACCATCGAGATCTTTG	0.572000													3	15					0	0	0	0
ZNF347	84671	broad.mit.edu	37	19	53644866	53644866	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:53644866T>A	uc002qbb.1	-	5	1284	c.1215A>T	c.(1213-1215)GAA>GAT	p.E405D	ZNF347_uc010eql.1_Missense_Mutation_p.E406D|ZNF347_uc002qbc.1_Missense_Mutation_p.E406D	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	405	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		CCTTGCCACATTCATTACATT	0.423000													42	60					0	0	0	0
NLRP11	204801	broad.mit.edu	37	19	56303779	56303779	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:56303779A>G	uc010ygf.1	-	9	3112	c.2401T>C	c.(2401-2403)TTC>CTC	p.F801L	NLRP11_uc002qlz.2_Missense_Mutation_p.F648L|NLRP11_uc002qmb.2_Missense_Mutation_p.F702L|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	801							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GTTGGGCTGAACAGAAGCACT	0.473000													9	78					0	0	0	0
ZNF71	58491	broad.mit.edu	37	19	57133864	57133864	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:57133864G>T	uc002qnm.3	+	3	1447	c.1209G>T	c.(1207-1209)GTG>GTT	p.V403V		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	403	C2H2-type 10.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		ACCAGATCGTGCACACCGGGG	0.647000													15	47					8.60227e-14	1.00802e-13	1	0
ZNF211	10520	broad.mit.edu	37	19	58132578	58132578	+	Translation_Start_Site	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:58132578G>T	uc010yhb.1	+	1	785	c.-322G>T	c.(-324--320)GAGGG>GATGG		ZNF134_uc002qpo.2_Missense_Mutation_p.R191M|ZNF134_uc002qpn.2_Missense_Mutation_p.R364M	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GCACACCAGAGGGTTCACACT	0.438000													39	36					2.51541e-25	3.12663e-25	1	0
OTOF	9381	broad.mit.edu	37	2	26702480	26702480	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:26702480G>T	uc002rhk.2	-	17	2081	c.1954C>A	c.(1954-1956)CGG>AGG	p.R652R	OTOF_uc002rhh.2_5'Flank|OTOF_uc002rhi.2_5'Flank|OTOF_uc002rhj.2_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	652	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCGAGGCCGCTGGGGCCGG	0.642000													22	38					2.44723e-14	2.89317e-14	1	0
GPR75	10936	broad.mit.edu	37	2	54080317	54080317	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:54080317T>C	uc002rxo.3	-	2	1848	c.1577A>G	c.(1576-1578)GAA>GGA	p.E526G	ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75	526	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GCTGTCATATTCCTGCACTAA	0.408000													29	70					0	0	0	0
AFTPH	54812	broad.mit.edu	37	2	64780007	64780007	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:64780007C>T	uc002sdc.2	+	1	1431	c.1399C>T	c.(1399-1401)CAC>TAC	p.H467Y	AFTPH_uc002scz.2_Missense_Mutation_p.H467Y|AFTPH_uc002sda.2_Missense_Mutation_p.H467Y|AFTPH_uc002sdb.2_Missense_Mutation_p.H467Y	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	467					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						GTCTTCAGAGCACTTTCCACA	0.413000													33	58					0	0	0	0
WDR54	84058	broad.mit.edu	37	2	74652827	74652827	+	Nonstop_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:74652827G>C	uc002slb.2	+	10	1064	c.1004G>C	c.(1003-1005)TGA>TCA	p.*335S		NM_032118	NP_115494	Q9H977	WDR54_HUMAN	WD repeat domain 54	335											0						AGCAGTGTGTGAGAAGAGCAG	0.507000													71	98					0	0	0	0
Unknown	0	broad.mit.edu	37	2	90249391	90249391	+	RNA	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:90249391C>T	uc010fhm.2	+	28		c.3934C>T								Parts of antibodies, mostly variable regions.																		TATTATAGTACCCCTCCCACA	0.517000													54	138					0	0	0	0
MYO7B	4648	broad.mit.edu	37	2	128384629	128384629	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:128384629T>A	uc002top.2	+	31	4270	c.4217T>A	c.(4216-4218)CTG>CAG	p.L1406Q	MYO7B_uc002toq.1_Missense_Mutation_p.L259Q|MYO7B_uc002tor.1_Missense_Mutation_p.L259Q	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1406	FERM 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CAGTGGCCGCTGCTCTTCTCC	0.637000													7	12					0	0	0	0
RAB3GAP1	22930	broad.mit.edu	37	2	135851202	135851202	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:135851202A>T	uc002tuj.2	+	5	326	c.301A>T	c.(301-303)ATG>TTG	p.M101L	RAB3GAP1_uc010fnf.2_Missense_Mutation_p.M101L|RAB3GAP1_uc010fng.2_5'UTR|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	101						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		TCCACAATCTATGCAAGATTT	0.338000													21	39					0	0	0	0
NEB	4703	broad.mit.edu	37	2	152397296	152397296	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:152397296G>T	uc010fnx.2	-	109	15790	c.15599C>A	c.(15598-15600)GCC>GAC	p.A5200D	NEB_uc002txr.2_Missense_Mutation_p.A1623D	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5200	Nebulin 141.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCTTTGGTGGCAAGTTCAAC	0.413000													26	45					2.79863e-10	3.20878e-10	1	0
SCN3A	6328	broad.mit.edu	37	2	166003416	166003416	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:166003416G>A	uc002ucx.2	-	12	1996	c.1504C>T	c.(1504-1506)CGA>TGA	p.R502*	SCN3A_uc002ucy.2_Nonsense_Mutation_p.R502*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.R502*|SCN3A_uc002uda.1_Nonsense_Mutation_p.R371*|SCN3A_uc002udb.1_Nonsense_Mutation_p.R371*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	502						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTCTTCCTTCGGTTCCTCCAT	0.428000													51	96					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179457367	179457367	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:179457367C>A	uc010zfg.1	-	250	51885	c.51661G>T	c.(51661-51663)GAT>TAT	p.D17221Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D10916Y|TTN_uc010zfi.1_Missense_Mutation_p.D10849Y|TTN_uc010zfj.1_Missense_Mutation_p.D10724Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18148							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTTGGCATCAAGAATCAAC	0.363000													35	51					7.65355e-07	8.48269e-07	1	0
GULP1	51454	broad.mit.edu	37	2	189458684	189458684	+	Silent	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:189458684A>T	uc010fru.2	+	12	1322	c.861A>T	c.(859-861)GGA>GGT	p.G287G	GULP1_uc002uqd.2_Missense_Mutation_p.D291V|GULP1_uc010zfw.1_Silent_p.G184G|GULP1_uc002uqf.2_Silent_p.G287G|GULP1_uc002uqg.2_Silent_p.G287G|GULP1_uc002uqh.1_3'UTR	NM_016315	NP_057399	Q9UBP9	GULP1_HUMAN	GULP, engulfment adaptor PTB domain containing	287					apoptosis|lipid transport|phagocytosis, engulfment	cytoplasm|intracellular membrane-bounded organelle	signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0423)|Epithelial(96;0.158)			TCAAAATGGGACTAACTCTTG	0.338000													9	26					0	0	0	0
CPS1	1373	broad.mit.edu	37	2	211473156	211473156	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:211473156C>T	uc002vee.3	+	19	2396	c.2264C>T	c.(2263-2265)TCC>TTC	p.S755F	CPS1_uc010fur.2_Missense_Mutation_p.S761F|CPS1_uc010fus.2_Missense_Mutation_p.S304F	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	755					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AACGTCGTATCCGGGAAGACA	0.423000													27	47					0	0	0	0
MARCH4	57574	broad.mit.edu	37	2	217124378	217124378	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:217124378G>A	uc002vgb.2	-	4	2657	c.890C>T	c.(889-891)TCG>TTG	p.S297L		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	297						Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		GCGGTACACCGAGGGTCCTTC	0.537000													23	25					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238287849	238287849	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:238287849G>C	uc002vwl.2	-	6	2212	c.1927C>G	c.(1927-1929)CTT>GTT	p.L643V	COL6A3_uc002vwo.2_Missense_Mutation_p.L437V|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.L437V|COL6A3_uc002vwr.2_Missense_Mutation_p.L236V|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	643	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCATCCAAAAGAAAGATGATA	0.388000													11	24					0	0	0	0
MYEOV2	150678	broad.mit.edu	37	2	241069334	241069334	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:241069334C>T	uc002vyu.1	-	4	375	c.375G>A	c.(373-375)TCG>TCA	p.S125S		NM_138336	NP_612209	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 1	Error:Variant_position_missing_in_Q8WXC6_after_alignment											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		TTACCTCTTCCGACACCACAG	0.617000													34	65					0	0	0	0
ING5	84289	broad.mit.edu	37	2	242650884	242650884	+	Silent	SNP	C	T	T	rs142180451	byFrequency	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:242650884C>T	uc002wcd.2	+	4	394	c.369C>T	c.(367-369)TCC>TCT	p.S123S	ING5_uc002wcc.1_Silent_p.S123S	NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	123					DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		TTGAAAGCTCCGGAGGGCGAG	0.393000													44	94					0	0	0	0
PTPRA	5786	broad.mit.edu	37	20	2845938	2845938	+	Translation_Start_Site	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr20:2845938C>T	uc002whj.2	+	5	522	c.-153C>T	c.(-155--151)CACGT>CATGT		VPS16_uc002whh.2_RNA|VPS16_uc002whe.2_Missense_Mutation_p.R717C|VPS16_uc002whf.2_Missense_Mutation_p.R573C|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Missense_Mutation_p.R403C|VPS16_uc002whi.2_Missense_Mutation_p.R201C	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A						axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						GCAGCTGGCACGTGACTTCCG	0.592000													23	60					0	0	0	0
ProSAPiP1	9762	broad.mit.edu	37	20	3147717	3147717	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr20:3147717C>T	uc002wia.1	-	1	1491	c.93G>A	c.(91-93)CCG>CCA	p.P31P	ProSAPiP1_uc002wib.1_Silent_p.P31P	NM_014731	NP_055546	O60299	PRIP1_HUMAN	ProSAPiP1 protein	31						cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				pancreas(1)	1						GGCGGGGGTCCGGGGGTCCAA	0.706000													9	10					0	0	0	0
RIN2	54453	broad.mit.edu	37	20	19981537	19981537	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr20:19981537G>T	uc002wro.1	+	11	2681	c.2645G>T	c.(2644-2646)GGC>GTC	p.G882V	RIN2_uc010gcu.1_Missense_Mutation_p.G449V|RIN2_uc010gcv.1_Missense_Mutation_p.G676V	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	882					endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						GATCCTTATGGCATCATTTTC	0.532000													22	63					5.45024e-15	6.47216e-15	1	0
CST3	1471	broad.mit.edu	37	20	23614554	23614554	+	Nonstop_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr20:23614554T>A	uc002wtm.2	-	3	515	c.440A>T	c.(439-441)TAG>TTG	p.*147L	CST3_uc002wtn.1_Nonstop_Mutation_p.*147L	NM_000099	NP_000090	P01034	CYTC_HUMAN	cystatin C precursor	147					defense response|fibril organization|negative regulation of blood vessel remodeling|negative regulation of collagen catabolic process|negative regulation of elastin catabolic process|negative regulation of extracellular matrix disassembly	extracellular space	beta-amyloid binding|cysteine-type endopeptidase inhibitor activity|protease binding			ovary(1)	1	Lung NSC(19;0.0789)|Colorectal(13;0.0993)|all_lung(19;0.169)					TACAGACCCCTAGGCGTCCTG	0.577000													31	97					0	0	0	0
BAGE2	85319	broad.mit.edu	37	21	11058238	11058238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr21:11058238G>A	uc002yit.1	-	3	410	c.202C>T	c.(202-204)CAG>TAG	p.Q68*	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTCGGCTCCTGCAGCACAAGG	0.433000													14	83					0	0	0	0
NRIP1	8204	broad.mit.edu	37	21	16339770	16339770	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr21:16339770T>A	uc002yjx.2	-	4	1342	c.744A>T	c.(742-744)GAA>GAT	p.E248D		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	248	Repression domain 1.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		TAGCCCTTTTTTCCACCATGC	0.473000													19	47					0	0	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45479008	45479008	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr21:45479008A>T	uc002zea.2	+	6	872	c.703A>T	c.(703-705)ATG>TTG	p.M235L	TRAPPC10_uc010gpo.2_5'UTR|TRAPPC10_uc002zdz.2_Missense_Mutation_p.M235L	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	235					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TGTTTTCGAGATGCTGCAGCA	0.468000													9	28					0	0	0	0
SYN3	8224	broad.mit.edu	37	22	32909744	32909744	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr22:32909744C>G	uc003amx.2	-	13	1837	c.1678G>C	c.(1678-1680)GAC>CAC	p.D560H	SYN3_uc003amy.2_3'UTR|SYN3_uc003amz.2_Missense_Mutation_p.D559H	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	560	E.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TTGGCCTCGTCTTCACTTGGG	0.562000													28	55					0	0	0	0
GRAP2	9402	broad.mit.edu	37	22	40364132	40364132	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr22:40364132G>T	uc003ayh.1	+	6	809	c.546G>T	c.(544-546)ATG>ATT	p.M182I	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Missense_Mutation_p.M156I|GRAP2_uc011aon.1_Missense_Mutation_p.M116I|GRAP2_uc010gya.1_Missense_Mutation_p.M182I|GRAP2_uc011aoo.1_Missense_Mutation_p.M110I|GRAP2_uc011aop.1_Missense_Mutation_p.M142I|GRAP2_uc011aoq.1_Missense_Mutation_p.M69I|GRAP2_uc003ayj.1_Missense_Mutation_p.M182I	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	182					cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GACCTTCGATGAACCGGAAGC	0.443000													8	10					0.00448238	0.0047127	1	0
PHF21B	112885	broad.mit.edu	37	22	45281799	45281799	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr22:45281799C>T	uc003bfn.2	-	11	1368	c.1217G>A	c.(1216-1218)GGT>GAT	p.G406D	PHF21B_uc003bfm.2_Missense_Mutation_p.G202D|PHF21B_uc011aqk.1_Missense_Mutation_p.G352D|PHF21B_uc011aql.1_Missense_Mutation_p.G364D	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	406							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		CCAGGGCACACCCTCGTCTTT	0.597000													57	84					0	0	0	0
CELSR1	9620	broad.mit.edu	37	22	46931727	46931727	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr22:46931727G>T	uc003bhw.1	-	1	1341	c.1341C>A	c.(1339-1341)ATC>ATA	p.I447I		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	447	Extracellular (Potential).|Cadherin 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CCTCCACCTCGATGTACACGG	0.667000													16	35					1.52009e-12	1.75802e-12	1	0
PLCL2	23228	broad.mit.edu	37	3	17052859	17052859	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:17052859G>A	uc011awc.1	+	5	2102	c.1997G>A	c.(1996-1998)AGG>AAG	p.R666K	PLCL2_uc011awd.1_Missense_Mutation_p.R548K	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	674	PI-PLC Y-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TTTCTTGCTAGGGTTTTTCCC	0.398000													16	23					0	0	0	0
FAM86D	692099	broad.mit.edu	37	3	75477008	75477008	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:75477008C>T	uc003dpp.3	-	5	498	c.139G>A	c.(139-141)GGT>AGT	p.G47S	FAM86D_uc003dpo.3_Intron|FAM86D_uc003dps.3_Intron|FAM86D_uc003dpq.3_5'UTR|FAM86D_uc003dpr.3_Intron	NR_024241				RecName: Full=Protein FAM86B1;												0						CCTGTGGTACCATGGGAGATG	0.582000													20	10					0	0	0	0
EPHA3	2042	broad.mit.edu	37	3	89456492	89456492	+	Silent	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:89456492C>G	uc003dqy.2	+	8	1893	c.1668C>G	c.(1666-1668)CTC>CTG	p.L556L	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	556	Helical; (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TTATTCTCCTCACTGTTGTCA	0.408000										TSP Lung(6;0.00050)			10	13					0	0	0	0
Unknown	0	broad.mit.edu	37	3	95374086	95374086	+	RNA	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:95374086C>T	uc003dro.1	-	5		c.1776G>A								Homo sapiens cDNA FLJ34909 fis, clone NT2RI2009301, moderately similar to BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL PRECURSOR.																		CTATTGTGAACAGGTTTAGAA	0.393000													4	22					0	0	0	0
EPHA6	285220	broad.mit.edu	37	3	97439174	97439174	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:97439174G>C	uc010how.1	+	15	2897	c.2854G>C	c.(2854-2856)GAT>CAT	p.D952H	EPHA6_uc003drt.2_Missense_Mutation_p.D344H|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	857	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CTCAGCAAGCGATGCATGGAG	0.463000													45	60					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124369736	124369736	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:124369736C>T	uc003ehg.2	+	38	5870	c.5743C>T	c.(5743-5745)CCT>TCT	p.P1915S	KALRN_uc003ehi.2_Missense_Mutation_p.P256S|KALRN_uc003ehk.2_Missense_Mutation_p.P218S|KALRN_uc011bjz.1_Missense_Mutation_p.P7S|KALRN_uc003ehj.2_Missense_Mutation_p.P186S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1914					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ACCCACACCTCCTAAAAACCC	0.542000													23	55					0	0	0	0
STAG1	10274	broad.mit.edu	37	3	136141433	136141433	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:136141433T>C	uc003era.1	-	19	2148	c.1856A>G	c.(1855-1857)CAG>CGG	p.Q619R	STAG1_uc003erb.1_Missense_Mutation_p.Q619R|STAG1_uc003erc.1_Missense_Mutation_p.Q393R|STAG1_uc010hua.1_Missense_Mutation_p.Q482R	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	619					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						AAACTTAATCTGTTTTAATAA	0.308000													21	52					0	0	0	0
CLSTN2	64084	broad.mit.edu	37	3	140281753	140281753	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:140281753C>A	uc003etn.2	+	14	2503	c.2313C>A	c.(2311-2313)TGC>TGA	p.C771*		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	771	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGATTAAGTGCTCAGAACTCA	0.562000										HNSCC(16;0.037)			10	38					0.000673444	0.000710858	1	0
PIK3CA	5290	broad.mit.edu	37	3	178916946	178916946	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:178916946G>C	uc003fjk.2	+	2	490	c.333G>C	c.(331-333)AAG>AAC	p.K111N		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	111					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.K111N(10)|p.K111E(7)|p.K111R(1)|p.K111del(1)|p.K111_I112>N(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			GTGAAGAAAAGATCCTCAATC	0.328000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			6	42					0	0	0	0
MCF2L2	23101	broad.mit.edu	37	3	182897459	182897459	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:182897459C>T	uc003fli.1	-	29	3217	c.3127G>A	c.(3127-3129)GAC>AAC	p.D1043N		NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	1043					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TGACTGTCGTCCGACTGGAAA	0.587000													85	82					0	0	0	0
RFC4	5984	broad.mit.edu	37	3	186518927	186518927	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:186518927T>G	uc003fqz.2	-	3	412	c.189A>C	c.(187-189)AAA>AAC	p.K63N	RFC4_uc011bsc.1_Missense_Mutation_p.K63N|RFC4_uc011bsd.1_Missense_Mutation_p.K63N	NM_002916	NP_002907	P35249	RFC4_HUMAN	replication factor C 4	63					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|large_intestine(1)	5	all_cancers(143;2.92e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)	GBM - Glioblastoma multiforme(93;0.0739)		CTAAAGATTTTTTCAGCACTG	0.378000													24	106					0	0	0	0
MFI2	4241	broad.mit.edu	37	3	196735690	196735690	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:196735690C>T	uc003fxk.3	-	12	1785	c.1672G>A	c.(1672-1674)GGC>AGC	p.G558S		NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	558	Transferrin-like 2.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		CTGAAGGCGCCGCGGTAGCCG	0.672000													26	60					0	0	0	0
DRD5	1816	broad.mit.edu	37	4	9784899	9784899	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:9784899A>C	uc003gmb.3	+	1	1642	c.1246A>C	c.(1246-1248)AAC>CAC	p.N416H		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	416	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CATGATGCCCAACGCCGTTAC	0.567000													19	48					0	0	0	0
LCORL	254251	broad.mit.edu	37	4	17910776	17910776	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:17910776T>A	uc003gpq.2	-	5	634	c.623A>T	c.(622-624)GAG>GTG	p.E208V	LCORL_uc011bxk.1_Missense_Mutation_p.E121V	NM_153686	NP_710153	Q8N3X6	LCORL_HUMAN	ligand dependent nuclear receptor	208					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						GCCTTCCTGCTCTTCCTGAAG	0.348000													28	42					0	0	0	0
SLIT2	9353	broad.mit.edu	37	4	20619185	20619185	+	Missense_Mutation	SNP	G	T	T	rs111791287		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:20619185G>T	uc003gpr.1	+	36	4464	c.4260G>T	c.(4258-4260)AAG>AAT	p.K1420N	SLIT2_uc003gps.1_Missense_Mutation_p.K1412N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1420					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AGGCGATCAAGTGCAAGCATG	0.557000													13	15					5.50884e-06	5.95671e-06	1	0
RCHY1	25898	broad.mit.edu	37	4	76407873	76407873	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:76407873G>C	uc003hik.2	-	9	793	c.661C>G	c.(661-663)CTC>GTC	p.L221V	RCHY1_uc010iio.2_Missense_Mutation_p.L117V|RCHY1_uc003hij.2_3'UTR|RCHY1_uc003hil.2_Missense_Mutation_p.L212V|RCHY1_uc010iip.2_3'UTR|RCHY1_uc010iiq.2_RNA|RCHY1_uc010iir.2_Missense_Mutation_p.L181V	NM_015436	NP_056251	Q96PM5	ZN363_HUMAN	ring finger and CHY zinc finger domain	221					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein autoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nuclear speck|ubiquitin ligase complex	electron carrier activity|p53 binding|protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			pancreas(1)	1			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TCATTGCAGAGAATCTGAAAA	0.318000													7	17					0	0	0	0
ENPEP	2028	broad.mit.edu	37	4	111398004	111398004	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:111398004C>A	uc003iab.3	+	1	776	c.434C>A	c.(433-435)CCG>CAG	p.P145Q		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	145	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	ACCCGGCTCCCGGAGCTGAAG	0.627000													51	108					2.52991e-16	3.05889e-16	1	0
SEC24D	9871	broad.mit.edu	37	4	119649746	119649746	+	Silent	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:119649746A>T	uc003ici.3	-	22	3200	c.2928T>A	c.(2926-2928)ATT>ATA	p.I976I	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Silent_p.I977I	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	976					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TTTGTTGGATAATACCCATTA	0.308000													7	25					0	0	0	0
DCLK2	166614	broad.mit.edu	37	4	151168815	151168815	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:151168815G>A	uc003ilm.3	+	13	1939	c.1839G>A	c.(1837-1839)CCG>CCA	p.P613P	DCLK2_uc003iln.3_Silent_p.P612P|DCLK2_uc003ilo.3_Silent_p.P630P|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	613	Protein kinase.				intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					TGGAGTTTCCGGCCCCCTACT	0.512000													12	25					0	0	0	0
WDR17	116966	broad.mit.edu	37	4	177077229	177077229	+	Splice_Site	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:177077229G>T	uc003iuj.2	+	19	2689	c.2533_splice	c.e19-1	p.W845_splice	WDR17_uc003iuk.2_Splice_Site_p.W821_splice|WDR17_uc003ium.3_Splice_Site_p.W821_splice|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Splice_Site_p.W64_splice	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1											ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		TTCTATTGTAGTGGGACAAAG	0.368000													24	69					2.27525e-19	2.81497e-19	1	0
FAT1	2195	broad.mit.edu	37	4	187538253	187538253	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr4:187538253A>C	uc003izf.2	-	11	9169	c.8981T>G	c.(8980-8982)CTT>CGT	p.L2994R		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2994	Extracellular (Potential).|Cadherin 27.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CGTGATAGTAAGAAGGTAATT	0.413000										HNSCC(5;0.00058)			13	23					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13928288	13928288	+	Splice_Site	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:13928288C>A	uc003jfd.2	-	3	235	c.193_splice	c.e3-1	p.I65_splice	DNAH5_uc003jfe.1_Splice_Site	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5						microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCTTTCAATCTGGGAAAAAG	0.318000									Kartagener_syndrome				23	72					3.5997e-14	4.23681e-14	1	0
NIPBL	25836	broad.mit.edu	37	5	37048756	37048756	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:37048756A>G	uc003jkl.3	+	39	7241	c.6742A>G	c.(6742-6744)ATG>GTG	p.M2248V	NIPBL_uc003jkk.3_Missense_Mutation_p.M2248V|NIPBL_uc003jkn.2_5'Flank	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2248	HEAT 4.				brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AGATACACGTATGCAGCAGGC	0.269000													9	24					0	0	0	0
LIFR	3977	broad.mit.edu	37	5	38482196	38482196	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:38482196C>T	uc010ive.1	-	20	3127	c.2795G>A	c.(2794-2796)CGT>CAT	p.R932H	LIFR_uc003jli.2_Missense_Mutation_p.R932H	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	932	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					ATCTTCAGGACGCTCAGCTAC	0.433000			T	PLAG1	salivary adenoma								29	188					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90106737	90106737	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:90106737C>T	uc003kju.2	+	74	15756	c.15660C>T	c.(15658-15660)TTC>TTT	p.F5220F	GPR98_uc003kjt.2_Silent_p.F2926F|GPR98_uc003kjw.2_Silent_p.F881F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5220	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATGGAACATTCAGCCTTGGGC	0.463000													28	32					0	0	0	0
NR2F1	7025	broad.mit.edu	37	5	92923999	92923999	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:92923999C>T	uc003kkj.2	+	2	2527	c.840C>T	c.(838-840)GCC>GCT	p.A280A		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	280					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		TGGCCGCCGCCGGCCTGCATG	0.667000													25	23					0	0	0	0
SLC27A6	28965	broad.mit.edu	37	5	128302163	128302163	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:128302163G>A	uc003kuy.2	+	2	729	c.333G>A	c.(331-333)CTG>CTA	p.L111L	SLC27A6_uc003kuz.2_Silent_p.L111L	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	111					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TGGCTCTGCTGATGAGCAATG	0.552000													13	10					0	0	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769259	140769259	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:140769259C>T	uc003lkc.1	+	1	1808	c.1808C>T	c.(1807-1809)TCC>TTC	p.S603F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.S603F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	603	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTGGCTGTCCTACCACGTG	0.662000													28	21					0	0	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140857945	140857945	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:140857945G>A	uc003lkv.1	+	1	2377	c.2262G>A	c.(2260-2262)CCG>CCA	p.P754P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Silent_p.P754P|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	754	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATGTCGCCGCACCTTTACC	0.642000											OREG0016865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	37					0	0	0	0
PDGFRB	5159	broad.mit.edu	37	5	149503837	149503837	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:149503837G>T	uc003lro.2	-	14	2468	c.1999C>A	c.(1999-2001)CTG>ATG	p.L667M	PDGFRB_uc010jhd.2_Missense_Mutation_p.L506M	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	667	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GCCCCCAACAGGTTGACCACG	0.632000			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								19	22					4.35082e-09	4.88319e-09	1	0
CDX1	1044	broad.mit.edu	37	5	149562339	149562339	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:149562339C>A	uc003lrq.2	+	2	550	c.454C>A	c.(454-456)CGG>AGG	p.R152R		NM_001804	NP_001795	P47902	CDX1_HUMAN	caudal type homeobox 1	152						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGTAAGACTCGGACCAAGGA	0.557000													97	73					9.72315e-31	1.21998e-30	1	0
RNF44	22838	broad.mit.edu	37	5	175956543	175956543	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:175956543G>A	uc003mek.1	-	9	1642	c.1117C>T	c.(1117-1119)CAT>TAT	p.H373Y	RNF44_uc011dfo.1_Missense_Mutation_p.H281Y|RNF44_uc003mel.1_Missense_Mutation_p.H62Y	NM_014901	NP_055716	Q7L0R7	RNF44_HUMAN	ring finger protein 44	373							zinc ion binding				0	all_cancers(89;0.0029)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCCGACTGATGGCTGTCCGGG	0.647000													22	25					0	0	0	0
NSD1	64324	broad.mit.edu	37	5	176709523	176709523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:176709523C>T	uc003mfr.3	+	19	6088	c.5950C>T	c.(5950-5952)CGA>TGA	p.R1984*	NSD1_uc003mft.3_Nonsense_Mutation_p.R1715*|NSD1_uc011dfx.1_Nonsense_Mutation_p.R1632*	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1984	SET.		R -> Q (in SOTOSS; loss of enzyme activity).		negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		ATGCAGAGCTCGAATTCGCTA	0.373000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			38	28					0	0	0	0
GNB2L1	10399	broad.mit.edu	37	5	180666087	180666087	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr5:180666087G>A	uc003mni.1	-	5	722	c.616C>T	c.(616-618)CTC>TTC	p.L206F	GNB2L1_uc003mnh.1_Missense_Mutation_p.L165F|GNB2L1_uc003mnk.1_Missense_Mutation_p.L128F|GNB2L1_uc003mnj.1_Missense_Mutation_p.L160F|GNB2L1_uc003mnl.1_5'UTR|GNB2L1_uc011dhk.1_Missense_Mutation_p.L206F|GNB2L1_uc010jls.2_3'UTR	NM_006098	NP_006089	P63244	GBLP_HUMAN	guanine nucleotide binding protein (G protein),	206	WD 5.				apoptosis|cell cycle|gastrulation|interspecies interaction between organisms|negative regulation of cell growth|negative regulation of phagocytosis|negative regulation of translation|negative regulation of Wnt receptor signaling pathway|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of gastrulation|positive regulation of GTPase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein homooligomerization|positive regulation of protein phosphorylation|regulation of cell cycle|regulation of cell division|regulation of establishment of cell polarity|regulation of protein localization|rhythmic process	cytoskeleton|dendrite|midbody|nucleus|perikaryon|perinuclear region of cytoplasm|phagocytic cup|small ribosomal subunit	ion channel inhibitor activity|protein kinase C binding|protein phosphatase binding|protein tyrosine kinase inhibitor activity|receptor tyrosine kinase binding|SH2 domain binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.101)|all cancers(165;0.11)		GAAGCACAGAGGGATCCATCT	0.522000													47	45					0	0	0	0
HIST1H3H	8357	broad.mit.edu	37	6	27778004	27778004	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:27778004G>A	uc003njm.2	+	1	163	c.153G>A	c.(151-153)GAG>GAA	p.E51E	HIST1H2BL_uc003njl.2_5'Flank	NM_003536	NP_003527	P68431	H31_HUMAN	histone cluster 1, H3h	51					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						CTCTCCGCGAGATTCGCCGCT	0.627000													29	53					0	0	0	0
ABCF1	23	broad.mit.edu	37	6	30546284	30546284	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:30546284G>C	uc003nql.2	+	6	514	c.419G>C	c.(418-420)AGT>ACT	p.S140T	ABCF1_uc003nqk.2_Missense_Mutation_p.S141T|ABCF1_uc003nqm.2_Missense_Mutation_p.S140T|ABCF1_uc010jsb.2_Intron	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	140				S->A: Reduces phosphorylation. Inhibits strongly phosphorylation by CK2; when associated with S-109. Does not inhibits interaction with EIF2; when associated with S-109. Does not inhibit association with ribosomes; when associated with S- 109. Reduces EIF2 interaction with ribosomes; when associated with S-109. Does not inhibit protein synthesis; when associated with A-109.	inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						CAGGATCAGAGTGAGGAAGAG	0.502000													19	5					0	0	0	0
BRD2	6046	broad.mit.edu	37	6	32947816	32947816	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:32947816G>T	uc003ocn.3	+	11	3754	c.2053G>T	c.(2053-2055)GAG>TAG	p.E685*	BRD2_uc003ocq.3_Nonsense_Mutation_p.E685*|BRD2_uc003ocp.3_Nonsense_Mutation_p.E565*|BRD2_uc010juh.2_Nonsense_Mutation_p.E720*	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	685	ET.				spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						AGAAGAGATTGAGATTGATTT	0.483000													4	60					1.23904e-05	1.33435e-05	1	0
DNAH8	1769	broad.mit.edu	37	6	38885712	38885712	+	Silent	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:38885712A>G	uc003ooe.1	+	68	10269	c.9669A>G	c.(9667-9669)GCA>GCG	p.A3223A	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGATGAGTGCAACAGGATTCC	0.333000													3	43					0	0	0	0
DEFB114	245928	broad.mit.edu	37	6	49928037	49928037	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:49928037C>T	uc011dwp.1	-	2	178	c.178G>A	c.(178-180)GAG>AAG	p.E60K		NM_001037499	NP_001032588	Q30KQ6	DB114_HUMAN	beta-defensin 114 precursor	60					defense response to bacterium	extracellular region				ovary(1)	1	Lung NSC(77;0.042)					TACAATTTCTCAGTGCAGCAA	0.378000													12	24					0	0	0	0
EYS	346007	broad.mit.edu	37	6	66205124	66205124	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:66205124C>A	uc011dxu.1	-	4	718	c.180G>T	c.(178-180)TTG>TTT	p.L60F	EYS_uc003peq.2_Missense_Mutation_p.L60F|EYS_uc003per.1_Missense_Mutation_p.L60F|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	60					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						TGTTTACACCCAAAAACCAGC	0.388000													15	75					1.3612e-06	1.50241e-06	1	0
SYNCRIP	10492	broad.mit.edu	37	6	86324795	86324795	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:86324795G>A	uc003pla.2	-	11	2092	c.1551C>T	c.(1549-1551)CCC>CCT	p.P517P	SYNCRIP_uc003pku.2_Silent_p.P517P|SYNCRIP_uc003pkw.2_Silent_p.P482P|SYNCRIP_uc003pky.2_Silent_p.P419P|SYNCRIP_uc003pkv.2_Silent_p.P517P|SYNCRIP_uc003pkx.2_Silent_p.P365P|SYNCRIP_uc003pkz.2_Silent_p.P482P	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	517	Interaction with APOBEC1.|8 X 3 AA repeats of R-G-G.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		CTCTACCGCGGGGAGGAGCAG	0.577000													85	45					0	0	0	0
RFX6	222546	broad.mit.edu	37	6	117198535	117198535	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:117198535C>T	uc003pxm.2	+	1	160	c.97C>T	c.(97-99)CTG>TTG	p.L33L		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	33					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TGTGCAGCTCCTGGGCAAGGG	0.667000													15	6					0	0	0	0
FAM184A	79632	broad.mit.edu	37	6	119345399	119345399	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:119345399C>G	uc003pyj.2	-	2	1087	c.739G>C	c.(739-741)GAT>CAT	p.D247H	FAM184A_uc003pyk.3_Missense_Mutation_p.D127H|FAM184A_uc003pyl.3_Missense_Mutation_p.D127H	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	247	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						CCTTCATAATCCTCAATTAGT	0.423000													16	39					0	0	0	0
ULBP2	80328	broad.mit.edu	37	6	150263229	150263229	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:150263229C>A	uc003qno.2	+	1	94	c.21C>A	c.(19-21)ACC>ACA	p.T7T	ULBP2_uc011eeh.1_Silent_p.T7T|ULBP2_uc010kij.2_Silent_p.T7T	NM_025217	NP_079493	Q9BZM5	N2DL2_HUMAN	UL16 binding protein 2 precursor	7					antigen processing and presentation|immune response|natural killer cell activation|regulation of immune response	anchored to membrane|cell surface|extracellular space|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		CCGCCGCTACCAAGATCCTTC	0.607000													18	7					1.33834e-09	1.51488e-09	1	0
PDE10A	10846	broad.mit.edu	37	6	165862443	165862443	+	Silent	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:165862443T>A	uc003qun.2	-	6	580	c.339A>T	c.(337-339)GCA>GCT	p.A113A	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Silent_p.A43A|PDE10A_uc003quo.2_Silent_p.A123A	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	113	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	GGAAATACAGTGCAAATCCAT	0.368000													23	38					0	0	0	0
ZFAND2A	90637	broad.mit.edu	37	7	1197827	1197827	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:1197827T>G	uc003skc.2	-	2	323	c.22A>C	c.(22-24)AAG>CAG	p.K8Q	ZFAND2A_uc003skd.3_Missense_Mutation_p.K8Q|uc003skf.1_5'Flank	NM_182491	NP_872297	Q8N6M9	ZFN2A_HUMAN	zinc finger, AN1-type domain 2A	8	AN1-type 1.					cytoplasm|nucleus	zinc ion binding			ovary(1)	1		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.82e-15)		GAACAATGCTTCCCCAAATCA	0.408000													48	230					0	0	0	0
Unknown	0	broad.mit.edu	37	7	38374952	38374952	+	Splice_Site	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:38374952C>T	uc010kxk.1	-	2		c.166_splice	c.e2-1							Homo sapiens cDNA FLJ77147 complete cds, highly similar to Homo sapiens T cell receptor gamma variable 7, mRNA.																		TTCTGACTGGCTGCAATGGGA	0.403000											OREG0017990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	23					0	0	0	0
Unknown	0	broad.mit.edu	37	7	39894089	39894089	+	RNA	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:39894089A>G	uc003thg.2	-	1		c.771T>C								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		TCAAATTCCAAGTGCTACTCA	0.368000													24	55					0	0	0	0
PKD1L1	168507	broad.mit.edu	37	7	47898336	47898336	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:47898336C>G	uc003tny.1	-	27	4297	c.4297G>C	c.(4297-4299)GAA>CAA	p.E1433Q		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1433	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TTCGAGTTTTCTTGCTCAGAG	0.438000													16	57					0	0	0	0
ASB4	51666	broad.mit.edu	37	7	95157465	95157465	+	Silent	SNP	C	A	A	rs146416403	by1000genomes	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:95157465C>A	uc011kij.1	+	3	828	c.828C>A	c.(826-828)GCC>GCA	p.A276A	ASB4_uc003unx.2_Silent_p.A276A	NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	276	ANK 6.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			AAGCTGGCGCCGAAGCCAATC	0.577000											OREG0018172	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	35					8.10497e-08	9.0206e-08	1	0
CHRM2	1129	broad.mit.edu	37	7	136700385	136700385	+	Missense_Mutation	SNP	A	G	G	rs142006633	byFrequency	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:136700385A>G	uc003vtf.1	+	4	1396	c.773A>G	c.(772-774)AAC>AGC	p.N258S	CHRM2_uc003vtg.1_Missense_Mutation_p.N258S|CHRM2_uc003vtj.1_Missense_Mutation_p.N258S|CHRM2_uc003vtk.1_Missense_Mutation_p.N258S|CHRM2_uc003vtl.1_Missense_Mutation_p.N258S|CHRM2_uc003vtm.1_Missense_Mutation_p.N258S|CHRM2_uc003vti.1_Missense_Mutation_p.N258S|CHRM2_uc003vto.1_Missense_Mutation_p.N258S|CHRM2_uc003vtn.1_Missense_Mutation_p.N258S|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	258	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CTGGAGCACAACAAAATCCAG	0.512000													10	19					0	0	0	0
MGAM	8972	broad.mit.edu	37	7	141730195	141730195	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:141730195G>A	uc003vwy.2	+	11	1309	c.1255G>A	c.(1255-1257)GAG>AAG	p.E419K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	419	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTATATGGATGAGAGAAGGGA	0.348000													7	13					0	0	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959789	157959789	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:157959789G>A	uc003wno.2	-	6	865	c.744C>T	c.(742-744)GCC>GCT	p.A248A	PTPRN2_uc003wnp.2_Silent_p.A231A|PTPRN2_uc003wnq.2_Silent_p.A248A|PTPRN2_uc003wnr.2_Silent_p.A210A|PTPRN2_uc011kwa.1_Silent_p.A271A	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	248	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGGCAGCATAGGCACTGAGGG	0.662000													13	12					0	0	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163401	163401	+	RNA	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:163401G>C	uc010lra.2	-	4		c.732C>G			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						TCTGGTGCTTGTTGGCTTTAA	0.463000													4	21					0	0	0	0
EFHA2	286097	broad.mit.edu	37	8	16884802	16884802	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:16884802G>T	uc003wxd.2	+	1	56	c.14G>T	c.(13-15)CGA>CTA	p.R5L		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	5						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		GCTGCGCTGCGAAGGCTCTTG	0.622000													8	15					1.58986e-06	1.74754e-06	1	0
DUSP26	78986	broad.mit.edu	37	8	33451188	33451188	+	Missense_Mutation	SNP	C	T	T	rs141858173		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:33451188C>T	uc003xjp.2	-	3	632	c.299G>A	c.(298-300)CGA>CAA	p.R100Q	DUSP26_uc003xjq.2_Missense_Mutation_p.R100Q	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	100	Tyrosine-protein phosphatase.					Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		GGGCGTGCCTCGCCACCGGCT	0.632000													10	34					0	0	0	0
PRDM14	63978	broad.mit.edu	37	8	70978695	70978695	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:70978695C>T	uc003xym.2	-	5	1160	c.958G>A	c.(958-960)GGT>AGT	p.G320S		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	320	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			TTCCCCGTACCTCCTTTTCCA	0.408000													36	50					0	0	0	0
TMEM67	91147	broad.mit.edu	37	8	94821068	94821068	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:94821068G>A	uc011lgk.1	+	24	2511	c.2440G>A	c.(2440-2442)GAA>AAA	p.E814K	TMEM67_uc010maw.2_Missense_Mutation_p.E520K|TMEM67_uc003yga.3_Missense_Mutation_p.E733K|TMEM67_uc011lgl.1_Missense_Mutation_p.E213K	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	814					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			AACTTTTCAGGAAAATTTGTG	0.308000													4	18					0	0	0	0
TSPYL5	85453	broad.mit.edu	37	8	98289495	98289495	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:98289495G>A	uc003yhy.2	-	1	682	c.578C>T	c.(577-579)TCG>TTG	p.S193L		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	193					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					TGGGGGCCCCGACCCTGCATC	0.622000													24	96					0	0	0	0
RRM2B	50484	broad.mit.edu	37	8	103236307	103236307	+	Silent	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:103236307A>G	uc003ykn.2	-	5	761	c.517T>C	c.(517-519)TTG>CTG	p.L173L	RRM2B_uc003yko.2_RNA|RRM2B_uc010mbv.1_Silent_p.L121L|RRM2B_uc010mbw.1_Intron|RRM2B_uc010mbx.1_Intron|RRM2B_uc010mby.1_Intron	NM_015713	NP_056528	Q7LG56	RIR2B_HUMAN	ribonucleotide reductase M2 B (TP53 inducible)	173					deoxyribonucleoside diphosphate metabolic process|DNA repair|nucleobase, nucleoside and nucleotide interconversion	nucleoplasm	ribonucleoside-diphosphate reductase activity|transition metal ion binding			ovary(2)	2	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000728)			ATCCATCGCAAGGCCCAATCT	0.333000								Direct_reversal_of_damage|Modulation_of_nucleotide_pools					66	82					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110461669	110461669	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:110461669T>A	uc003yne.2	+	40	6232	c.6128T>A	c.(6127-6129)CTT>CAT	p.L2043H		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2043	Extracellular (Potential).|IPT/TIG 13.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATTGACAGGCTTAGATCTGAT	0.353000										HNSCC(38;0.096)			5	5					0	0	0	0
COL14A1	7373	broad.mit.edu	37	8	121256222	121256222	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:121256222C>T	uc003yox.2	+	20	2719	c.2454C>T	c.(2452-2454)GTC>GTT	p.V818V	COL14A1_uc003yoy.2_Silent_p.V496V	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	818	Fibronectin type-III 6.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GCGAAGGCGTCAGCGTCTCCG	0.498000													15	153					0	0	0	0
DOCK8	81704	broad.mit.edu	37	9	289552	289552	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr9:289552C>T	uc003zgf.2	+	4	487	c.375C>T	c.(373-375)TAC>TAT	p.Y125Y	DOCK8_uc011lls.1_Silent_p.Y125Y|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Silent_p.Y57Y|DOCK8_uc010mgt.2_Silent_p.Y57Y|DOCK8_uc003zgg.2_Silent_p.Y57Y|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	125					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TTCAGACCTACATCCGTGAGT	0.328000													9	47					0	0	0	0
SYK	6850	broad.mit.edu	37	9	93650843	93650843	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr9:93650843G>A	uc004aqz.2	+	13	1974	c.1769G>A	c.(1768-1770)CGG>CAG	p.R590Q	SYK_uc004ara.2_Missense_Mutation_p.R567Q|SYK_uc004arb.2_Missense_Mutation_p.R567Q|SYK_uc004arc.2_Missense_Mutation_p.R590Q|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	590	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						AAAGGAGAGCGGATGGGGTGC	0.438000			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								6	16					0	0	0	0
NCBP1	4686	broad.mit.edu	37	9	100403139	100403139	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr9:100403139C>G	uc004axq.2	+	2	557	c.98C>G	c.(97-99)TCT>TGT	p.S33C		NM_002486	NP_002477	Q09161	NCBP1_HUMAN	nuclear cap binding protein subunit 1, 80kDa	33	MIF4G.				gene silencing by RNA|histone mRNA metabolic process|mRNA 3'-end processing|mRNA capping|mRNA cleavage|mRNA export from nucleus|ncRNA metabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of mRNA 3'-end processing|positive regulation of viral transcription|regulation of translational initiation|spliceosomal snRNP assembly|termination of RNA polymerase II transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytosol|mRNA cap binding complex|nucleoplasm|ribonucleoprotein complex	protein binding|RNA cap binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.158)				CATTTGGAATCTTTAATATGT	0.358000													28	51					0	0	0	0
OR1J2	26740	broad.mit.edu	37	9	125273891	125273891	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr9:125273891G>A	uc004bmj.1	+	4	1666	c.811G>A	c.(811-813)GAT>AAT	p.D271N	OR1J2_uc011lyv.1_Missense_Mutation_p.D271N	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						TATTGACAAGGATGTCATTGT	0.473000													62	126					0	0	0	0
TTC16	158248	broad.mit.edu	37	9	130482360	130482360	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr9:130482360C>T	uc004brq.1	+	5	497	c.430C>T	c.(430-432)CAA>TAA	p.Q144*	PTRH1_uc011mah.1_Intron|TTC16_uc011mai.1_Nonsense_Mutation_p.Q131*|TTC16_uc004brr.1_Nonsense_Mutation_p.Q89*|TTC16_uc010mxn.1_5'Flank	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	144	TPR 3.						binding				0						TCCCCAGGGACAATGCCTTTT	0.577000													45	51					0	0	0	0
SEC16A	9919	broad.mit.edu	37	9	139366454	139366454	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr9:139366454C>T	uc004chx.2	-	4	3986	c.3677G>A	c.(3676-3678)AGC>AAC	p.S1226N	SEC16A_uc004chv.3_Missense_Mutation_p.S616N|SEC16A_uc004chw.2_Missense_Mutation_p.S1226N|SEC16A_uc010nbn.2_Missense_Mutation_p.S1226N	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	1048	Required for endoplasmic reticulum localization.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CGAGGAGTGGCTGGCTCGGGA	0.637000													33	37					0	0	0	0
ENTPD8	377841	broad.mit.edu	37	9	140330690	140330690	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr9:140330690G>A	uc004cmw.2	-	7	1009	c.825C>T	c.(823-825)CTC>CTT	p.L275L	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Silent_p.L275L	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	275	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		GGTAGCCGCTGAGGTAGCACG	0.706000													12	32					0	0	0	0
NR0B1	190	broad.mit.edu	37	X	30327172	30327172	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chrX:30327172C>A	uc004dcf.3	-	1	324	c.309G>T	c.(307-309)CCG>CCT	p.P103P		NM_000475	NP_000466	P51843	NR0B1_HUMAN	nuclear receptor subfamily 0, group B, member 1	103	4 X 67 AA tandem repeats.|2.				adrenal gland development|hypothalamus development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of steroid hormone receptor signaling pathway|pituitary gland development|protein localization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid biosynthetic process	cytoplasm|membrane fraction|nucleoplasm|nucleus|polysomal ribosome	AF-2 domain binding|DNA hairpin binding|ligand-regulated transcription factor activity|protein domain specific binding|protein homodimerization activity|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|steroid hormone receptor binding|transcription corepressor activity|transcription factor binding			ovary(1)|lung(1)	2					Dexamethasone(DB01234)|Tretinoin(DB00755)	AGCCCCAGCACGGACCCAGCG	0.677000											OREG0019719	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	15					2.37509e-13	2.75884e-13	1	0
DCAF12L1	139170	broad.mit.edu	37	X	125686264	125686264	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chrX:125686264G>T	uc004eul.2	-	1	579	c.328C>A	c.(328-330)CAG>AAG	p.Q110K		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	110										skin(3)|ovary(1)	4						CACACCACCTGCCTGGAGTTC	0.637000													36	17					4.65686e-17	5.65628e-17	1	0
SMARCA1	6594	broad.mit.edu	37	X	128599869	128599869	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chrX:128599869T>G	uc004eun.3	-	22	2882	c.2769A>C	c.(2767-2769)GAA>GAC	p.E923D	SMARCA1_uc004eup.3_Missense_Mutation_p.E911D|SMARCA1_uc011muk.1_Missense_Mutation_p.E923D|SMARCA1_uc011mul.1_Missense_Mutation_p.E911D	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	923					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						GAATTCTTGCTTCTCCACGTT	0.333000													29	21					0	0	0	0
GPC4	2239	broad.mit.edu	37	X	132438794	132438794	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chrX:132438794G>A	uc004exc.1	-	7	1463	c.1251C>T	c.(1249-1251)AAC>AAT	p.N417N	GPC4_uc011mvg.1_Silent_p.N347N	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	417					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					CCTCATTGCCGTTTCCTGCAG	0.468000													74	35					0	0	0	0
GABRA3	2556	broad.mit.edu	37	X	151336735	151336735	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chrX:151336735C>T	uc010ntk.1	-	10	1684	c.1444G>A	c.(1444-1446)GAG>AAG	p.E482K		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	482					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ATAGCTGACTCCCGGTTGACA	0.498000													35	13					0	0	0	0
ATP2B3	492	broad.mit.edu	37	X	152825277	152825277	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chrX:152825277G>A	uc004fht.1	+	16	2842	c.2716G>A	c.(2716-2718)GAG>AAG	p.E906K	ATP2B3_uc004fhs.1_Missense_Mutation_p.E906K|ATP2B3_uc010nuf.1_5'Flank|ATP2B3_uc004fhu.1_5'Flank	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	906	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCCACCCACAGAGTCGCTGCT	0.597000													35	11					0	0	0	0
SPEN	23013	broad.mit.edu	37	1	16254612	16254612	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:16254612A>G	uc001axk.1	+	11	2081	c.1877A>G	c.(1876-1878)TAT>TGT	p.Y626C	SPEN_uc010obp.1_Missense_Mutation_p.Y585C	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	626	Arg-rich.|Tyr-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		TCCTACGACTATAACCAAGAT	0.398000													19	24					0	0	0	0
LAPTM5	7805	broad.mit.edu	37	1	31210496	31210496	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:31210496C>A	uc001bsc.2	-	6	652	c.561G>T	c.(559-561)ATG>ATT	p.M187I		NM_006762	NP_006753	Q13571	LAPM5_HUMAN	lysosomal protein transmembrane 5	187	Helical; (Potential).				transport	integral to plasma membrane|lysosomal membrane					0		Colorectal(325;0.0199)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0966)|Medulloblastoma(700;0.151)|Ovarian(437;0.192)		STAD - Stomach adenocarcinoma(196;0.0196)|READ - Rectum adenocarcinoma(331;0.0649)		AGATGATCATCATCTTGATGA	0.522000													23	45					7.07758e-08	7.92223e-08	1	0
EIF2C1	26523	broad.mit.edu	37	1	36372612	36372612	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:36372612T>G	uc001bzl.2	+	12	1687	c.1474T>G	c.(1474-1476)TAT>GAT	p.Y492D	EIF2C1_uc001bzk.2_Missense_Mutation_p.Y417D|EIF2C1_uc009vuy.2_RNA	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	492					negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				TTTCTGCAAATATGCACAGGG	0.537000													37	52					0	0	0	0
C1orf168	199920	broad.mit.edu	37	1	57257988	57257988	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:57257988G>T	uc001cym.3	-	2	904	c.498C>A	c.(496-498)GCC>GCA	p.A166A	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Silent_p.A166A	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	166										ovary(3)|skin(2)	5						CCAGATGGATGGCCTTACTTC	0.483000													37	62					1.836e-18	2.24952e-18	1	0
MCOLN3	55283	broad.mit.edu	37	1	85491754	85491754	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:85491754G>T	uc001dkp.2	-	9	1056	c.963C>A	c.(961-963)TTC>TTA	p.F321L	MCOLN3_uc001dko.2_5'Flank|MCOLN3_uc001dkq.2_Missense_Mutation_p.F265L|MCOLN3_uc001dkr.2_3'UTR|MCOLN3_uc001dks.3_Missense_Mutation_p.F166L	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	321						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		AATGGAGGAGGAAAAAATTGA	0.363000													10	16					2.80697e-09	3.16804e-09	1	0
DPYD	1806	broad.mit.edu	37	1	97915726	97915726	+	Silent	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:97915726G>C	uc001drv.2	-	14	1931	c.1794C>G	c.(1792-1794)CCC>CCG	p.P598P		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	598					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GGCCATACATGGGGCCAGAGG	0.448000													28	52					0	0	0	0
TARS2	80222	broad.mit.edu	37	1	150478094	150478094	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:150478094C>A	uc001euq.2	+	17	1928	c.1921C>A	c.(1921-1923)CTG>ATG	p.L641M	TARS2_uc001eur.2_Missense_Mutation_p.L559M|TARS2_uc009wlt.2_Missense_Mutation_p.L267M|TARS2_uc009wls.2_Missense_Mutation_p.L511M|ECM1_uc010pce.1_5'Flank|ECM1_uc010pcf.1_5'Flank|ECM1_uc001eus.2_5'Flank|ECM1_uc001eut.2_5'Flank|ECM1_uc001euu.2_5'Flank|ECM1_uc001euv.2_5'Flank|ECM1_uc009wlu.2_5'Flank	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	641					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	GGCTGCAGGACTGGTCAGTGA	0.527000													42	69					4.0306e-16	4.85098e-16	1	0
VPS72	6944	broad.mit.edu	37	1	151150569	151150569	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:151150569C>T	uc001exe.1	-	5	658	c.615G>A	c.(613-615)CGG>CGA	p.R205R	TMOD4_uc001exd.2_5'Flank|TMOD4_uc001exc.3_5'Flank|TMOD4_uc010pct.1_5'Flank|VPS72_uc001exf.1_Silent_p.R205R	NM_005997	NP_005988	Q15906	VPS72_HUMAN	transcription factor-like 1	205	Potential.				chromatin modification|negative regulation of transcription from RNA polymerase II promoter	nucleus|protein complex	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|pancreas(1)	2	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CGGGGCACTTCCGCTTCTTAT	0.493000													19	57					0	0	0	0
FAM189B	10712	broad.mit.edu	37	1	155223908	155223908	+	Silent	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:155223908A>T	uc001fjm.2	-	3	966	c.360T>A	c.(358-360)GCT>GCA	p.A120A	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_5'Flank|FAM189B_uc001fjn.2_Intron|FAM189B_uc001fjo.2_Silent_p.A101A|FAM189B_uc001fjp.2_Intron|FAM189B_uc001fjq.1_Silent_p.A120A	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	120						integral to membrane	WW domain binding			ovary(1)|breast(1)	2						GGGCCAGTTGAGCATTCTTAC	0.532000													83	111					0	0	0	0
SLAMF6	114836	broad.mit.edu	37	1	160466073	160466073	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:160466073T>G	uc001fwe.1	-	2	220	c.160A>C	c.(160-162)ACT>CCT	p.T54P	SLAMF6_uc001fwd.1_Missense_Mutation_p.T54P|SLAMF6_uc010pjh.1_Intron|SLAMF6_uc010pji.1_Intron|SLAMF6_uc010pjj.1_Intron|SLAMF6_uc009wtm.1_Intron	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	54	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			AAAAGCCAAGTGATGAAGTTG	0.463000													48	135					0	0	0	0
SELP	6403	broad.mit.edu	37	1	169576215	169576215	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:169576215G>C	uc001ggi.3	-	9	1556	c.1491C>G	c.(1489-1491)AAC>AAG	p.N497K	SELP_uc001ggh.2_Missense_Mutation_p.N332K|SELP_uc009wvr.2_Missense_Mutation_p.N497K	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	497	Extracellular (Potential).|Sushi 5.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	CAGAATTCCAGTTTCCAGTAG	0.453000													38	40					0	0	0	0
SMG7	9887	broad.mit.edu	37	1	183518407	183518407	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:183518407G>T	uc001gqg.2	+	18	2929	c.2807G>T	c.(2806-2808)GGA>GTA	p.G936V	SMG7_uc001gqf.2_Missense_Mutation_p.G940V|SMG7_uc001gqh.2_Missense_Mutation_p.G890V|SMG7_uc001gqi.2_Missense_Mutation_p.G848V|SMG7_uc010poc.1_Missense_Mutation_p.G944V	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	936	Ser-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TCCCTCACCGGATTCTCTCTC	0.403000													18	26					0.000132079	0.000140334	1	0
CR1	1378	broad.mit.edu	37	1	207760880	207760880	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:207760880G>A	uc001hfy.2	+	26	4470	c.4330G>A	c.(4330-4332)GTC>ATC	p.V1444I	CR1_uc009xcl.1_Missense_Mutation_p.V994I|CR1_uc001hfx.2_Missense_Mutation_p.V1894I	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1444	Sushi 22.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AGAAAACTTGGTCTGGTCAAG	0.388000													45	81					0	0	0	0
CD34	947	broad.mit.edu	37	1	208072364	208072364	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:208072364G>A	uc001hgw.1	-	3	728	c.470C>T	c.(469-471)CCC>CTC	p.P157L	CD34_uc001hgx.1_Missense_Mutation_p.P157L|CD34_uc010psj.1_Intron	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a	157	Extracellular (Potential).				cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						GGGTTTAGTGGGAGATGTTGC	0.468000													78	185					0	0	0	0
SLC30A1	7779	broad.mit.edu	37	1	211751730	211751730	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:211751730G>A	uc001hio.1	-	1	370	c.225C>T	c.(223-225)ATC>ATT	p.I75I		NM_021194	NP_067017	Q9Y6M5	ZNT1_HUMAN	solute carrier family 30 (zinc transporter),	75	Cytoplasmic (Potential).				cadmium ion transmembrane transport|cellular calcium ion homeostasis|cellular zinc ion homeostasis|negative regulation of calcium ion import|negative regulation of neurotransmitter secretion|negative regulation of zinc ion import	integral to membrane|T-tubule	calcium channel inhibitor activity|zinc ion transmembrane transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(81;0.00535)|GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.0604)|Epithelial(68;0.0978)		CCTCGGCTCGGATCCAGCCGA	0.662000													16	20					0	0	0	0
AIDA	64853	broad.mit.edu	37	1	222843263	222843263	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:222843263T>C	uc001hnn.2	-	10	1098	c.893A>G	c.(892-894)CAT>CGT	p.H298R	AIDA_uc001hno.2_RNA|AIDA_uc010pus.1_Missense_Mutation_p.H274R	NM_022831	NP_073742	Q96BJ3	AIDA_HUMAN	axin interactor, dorsalization associated	298					dorsal/ventral pattern formation|negative regulation of JNK cascade|negative regulation of JUN kinase activity|regulation of protein homodimerization activity						0						TTGATGTAGATGAAGATAAAG	0.353000													18	31					0	0	0	0
ZNF678	339500	broad.mit.edu	37	1	227842404	227842404	+	Silent	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:227842404A>G	uc001hqw.1	+	4	798	c.453A>G	c.(451-453)AAA>AAG	p.K151K	ZNF678_uc009xet.1_Intron|ZNF678_uc009xeu.1_Intron	NM_178549	NP_848644	F5GXA7	F5GXA7_HUMAN	zinc finger protein 678	206					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			pancreas(1)	1		Prostate(94;0.0885)				CTGGAGAGAAACCCTACAAAT	0.353000													26	78					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237802492	237802492	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:237802492G>T	uc001hyl.1	+	46	7226	c.7106G>T	c.(7105-7107)AGT>ATT	p.S2369I		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2369	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGCGGATCCAGTAAAACACTG	0.418000													7	20					2.0095e-06	2.19511e-06	1	0
OR2T3	343173	broad.mit.edu	37	1	248636651	248636651	+	5'Flank	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:248636651C>T	uc001iel.1	+							NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTGAGCCAGTCATGTGCTCAG	0.443000													15	81					0	0	0	0
ITGA8	8516	broad.mit.edu	37	10	15726024	15726024	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:15726024C>A	uc001ioc.1	-	4	547	c.547G>T	c.(547-549)GAG>TAG	p.E183*	ITGA8_uc010qcb.1_Nonsense_Mutation_p.E183*	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	183	Extracellular (Potential).|FG-GAP 2.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GGAGAGAACTCGGCATAGGCG	0.458000													16	42					3.45872e-05	3.71846e-05	1	0
C10orf140	387640	broad.mit.edu	37	10	21804965	21804965	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:21804965C>G	uc009xkd.2	-	4	4040	c.1787G>C	c.(1786-1788)CGA>CCA	p.R596P	uc001iqp.1_Intron	NM_207371	NP_997254	Q1XH10	DLN1_HUMAN	hypothetical protein LOC387640	515						nucleus	nucleotide binding			ovary(1)	1						CCTAGCCTCTCGGAGTATTCT	0.438000													16	81					0	0	0	0
ANKRD26	22852	broad.mit.edu	37	10	27366291	27366291	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:27366291C>T	uc001ith.2	-	9	1225	c.1053G>A	c.(1051-1053)TCG>TCA	p.S351S	ANKRD26_uc001itg.2_Silent_p.S70S|ANKRD26_uc009xku.1_Silent_p.S351S	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	351						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						GGTTTGCTAACGACTTGTGGG	0.383000													38	58					0	0	0	0
ARMC4	55130	broad.mit.edu	37	10	28196653	28196653	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:28196653G>A	uc009xky.2	-	17	2647	c.2549C>T	c.(2548-2550)CCT>CTT	p.P850L	ARMC4_uc010qds.1_Missense_Mutation_p.P375L|ARMC4_uc010qdt.1_Missense_Mutation_p.P542L|ARMC4_uc001itz.2_Missense_Mutation_p.P850L	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	850	ARM 6.						binding			ovary(4)|skin(2)	6						GTCTGGGTGAGGATTTTTCAG	0.443000													18	40					0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43650762	43650762	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:43650762G>A	uc001jan.2	+	2	500	c.165G>A	c.(163-165)GAG>GAA	p.E55E	CSGALNACT2_uc001jam.1_Silent_p.E55E	NM_018590	NP_061060	Q8N6G5	CGAT2_HUMAN	chondroitin sulfate	55	Lumenal (Potential).				chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	Golgi cisterna membrane|integral to Golgi membrane	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding			ovary(1)	1						ATGGTAAAGAGTATTATCAAG	0.418000													15	44					0	0	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999149	46999149	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:46999149G>C	uc001jec.2	+	3	404	c.269G>C	c.(268-270)TGG>TCG	p.W90S	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	90											0						GGAGGCCACTGGTGGAGCAGC	0.667000													9	58					0	0	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70962246	70962246	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:70962246C>G	uc001jpe.1	+	12	1625	c.1570C>G	c.(1570-1572)CTC>GTC	p.L524V	SUPV3L1_uc010qjd.1_Missense_Mutation_p.L393V	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	524					DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						TGCCTACCATCTCCCTGATGC	0.373000													23	53					0	0	0	0
HTR7	3363	broad.mit.edu	37	10	92509226	92509226	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:92509226G>C	uc001kha.2	-	2	908	c.665C>G	c.(664-666)GCT>GGT	p.A222G	HTR7_uc001kgz.2_Missense_Mutation_p.A222G|HTR7_uc001khb.2_Missense_Mutation_p.A222G	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	222	Helical; Name=4; (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	TACATTCTGAGCCCATCCAAA	0.483000													40	58					0	0	0	0
CASP7	840	broad.mit.edu	37	10	115481445	115481445	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:115481445G>A	uc001lan.2	+	4	457	c.283G>A	c.(283-285)GAG>AAG	p.E95K	CASP7_uc001lam.2_Missense_Mutation_p.E95K|CASP7_uc001lao.2_Missense_Mutation_p.E128K|CASP7_uc001lap.2_Missense_Mutation_p.E95K|CASP7_uc001laq.2_Missense_Mutation_p.E95K|CASP7_uc010qsa.1_Missense_Mutation_p.E180K|CASP7_uc010qsb.1_Missense_Mutation_p.E70K	NM_033339	NP_203125	P55210	CASP7_HUMAN	caspase 7 isoform alpha	95					activation of caspase activity by cytochrome c|cellular component disassembly involved in apoptosis|induction of apoptosis by intracellular signals|proteolysis	cytosol|endoplasmic reticulum membrane|mitochondrial membrane|nucleoplasm	cysteine-type endopeptidase activity|protein binding			ovary(1)	1		Colorectal(252;0.0946)|Breast(234;0.188)		Epithelial(162;0.012)|all cancers(201;0.014)		CAAAGATGCCGAGGCGCTCTT	0.502000													39	71					0	0	0	0
MMP21	118856	broad.mit.edu	37	10	127462419	127462420	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:127462419_127462420GA>TT	uc001liu.2	-	2	677_678	c.677_678TC>AA	c.(676-678)ATC>AAA	p.I226K		NM_147191	NP_671724	Q8N119	MMP21_HUMAN	matrix metalloproteinase 21 preproprotein	226					proteolysis	extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				AGCCCAGCTTGATGTCGACCGC	0.728000													23	40					0	0	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													4	60					0	0	0	0
SAA4	6291	broad.mit.edu	37	11	18257396	18257396	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:18257396C>T	uc001mny.2	-	2	174	c.78G>A	c.(76-78)AAG>AAA	p.K26K		NM_006512	NP_006503	P35542	SAA4_HUMAN	serum amyloid A4, constitutive precursor	26					acute-phase response	high-density lipoprotein particle					0						GGAGAGCCTCCTTGAAAAACG	0.493000													24	79					0	0	0	0
NAV2	89797	broad.mit.edu	37	11	20083856	20083856	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:20083856A>G	uc010rdm.1	+	22	5364	c.5003A>G	c.(5002-5004)CAT>CGT	p.H1668R	NAV2_uc001mpp.2_Missense_Mutation_p.H1548R|NAV2_uc001mpr.3_Missense_Mutation_p.H1612R|NAV2_uc001mpt.2_Missense_Mutation_p.H661R|NAV2_uc009yhx.2_Missense_Mutation_p.H676R|NAV2_uc009yhy.1_Missense_Mutation_p.H574R|NAV2_uc009yhz.2_Missense_Mutation_p.H257R|NAV2_uc001mpu.2_Missense_Mutation_p.H50R	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	1668	Ser-rich.					nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						TTAATAGTTCATGGATCCTCA	0.423000													11	50					0	0	0	0
TRIM48	79097	broad.mit.edu	37	11	55032387	55032387	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:55032387C>T	uc010rid.1	+	2	142	c.56C>T	c.(55-57)TCT>TTT	p.S19F		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	3						intracellular	zinc ion binding				0						AACATGAATTCTGGAATCTCG	0.463000													89	188					0	0	0	0
OR5D16	390144	broad.mit.edu	37	11	55606573	55606573	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:55606573C>G	uc010rio.1	+	1	346	c.346C>G	c.(346-348)CTA>GTA	p.L116V		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TGAATTAATTCTATTTGCGGT	0.438000													47	84					0	0	0	0
SYVN1	84447	broad.mit.edu	37	11	64897499	64897499	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:64897499C>A	uc001odb.2	-	13	1477	c.1383G>T	c.(1381-1383)ATG>ATT	p.M461I	SYVN1_uc001odc.2_Missense_Mutation_p.M460I|SYVN1_uc009yqc.2_Missense_Mutation_p.M409I	NM_172230	NP_757385	Q86TM6	SYVN1_HUMAN	synoviolin 1 isoform b	461	Pro-rich.|Cytoplasmic (Potential).				ER-associated protein catabolic process|response to stress	endoplasmic reticulum membrane|integral to membrane|nucleus	acid-amino acid ligase activity|protein binding|zinc ion binding			ovary(1)	1						GGGGCATACCCATCCAGGGAG	0.647000													7	14					5.18039e-06	5.63627e-06	1	0
SERPINH1	871	broad.mit.edu	37	11	75277799	75277799	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:75277799C>T	uc001owr.2	+	2	634	c.405C>T	c.(403-405)TAC>TAT	p.Y135Y	SERPINH1_uc009yuf.2_Silent_p.Y135Y|SERPINH1_uc009yug.2_Silent_p.Y135Y|SERPINH1_uc001ows.2_Silent_p.Y135Y|SERPINH1_uc001owt.2_5'Flank	NM_001235	NP_001226	P50454	SERPH_HUMAN	serine (or cysteine) proteinase inhibitor, clade	135					regulation of proteolysis|response to unfolded protein	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	collagen binding|serine-type endopeptidase inhibitor activity			ovary(2)	2	Ovarian(111;0.11)					GCCGACTGTACGGACCCAGCT	0.642000													16	25					0	0	0	0
UBE4A	9354	broad.mit.edu	37	11	118267058	118267059	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:118267058_118267059CC>TT	uc001psw.2	+	20	3233_3234	c.3104_3105CC>TT	c.(3103-3105)CCC>CTT	p.P1035L	UBE4A_uc001psv.2_Missense_Mutation_p.P1042L	NM_004788	NP_004779	Q14139	UBE4A_HUMAN	ubiquitination factor E4A	1035	U-box.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	5	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		AACCGTAGTCCCCTCACCATGG	0.421000													23	42					0	0	0	0
SORL1	6653	broad.mit.edu	37	11	121444948	121444948	+	Splice_Site	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:121444948A>T	uc001pxx.2	+	24	3418	c.3338_splice	c.e24-2	p.P1113_splice	SORL1_uc010rzp.1_5'Flank	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class						cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ATCCCATTTTAGCTACCACCA	0.418000													52	107					0	0	0	0
HSPA8	3312	broad.mit.edu	37	11	122928593	122928593	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:122928593T>A	uc001pyo.2	-	9	1868	c.1790A>T	c.(1789-1791)AAA>ATA	p.K597I	HSPA8_uc009zbc.2_Missense_Mutation_p.K361I|HSPA8_uc001pyp.2_Intron|HSPA8_uc010rzu.1_Missense_Mutation_p.K520I	NM_006597	NP_006588	P11142	HSP7C_HUMAN	heat shock 70kDa protein 8 isoform 1	597					cellular membrane organization|interspecies interaction between organisms|mRNA metabolic process|negative regulation of transcription, DNA-dependent|neurotransmitter secretion|post-Golgi vesicle-mediated transport|protein folding|response to unfolded protein|transcription, DNA-dependent	cell surface|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|melanosome|plasma membrane|ribonucleoprotein complex	ATP binding|ATPase activity, coupled|protein binding			central_nervous_system(7)|lung(1)	8		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CTCCAGCTCTTTCTGTTGATG	0.463000													53	88					0	0	0	0
OR10S1	219873	broad.mit.edu	37	11	123847492	123847492	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:123847492T>A	uc001pzm.1	-	1	907	c.907A>T	c.(907-909)ACT>TCT	p.T303S		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	303	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TTCCGCAAAGTGTAAATGAAT	0.537000													43	83					0	0	0	0
Unknown	0	broad.mit.edu	37	11	124120549	124120549	+	IGR	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:124120549C>T								OR8G2 (24239 upstream) : OR8D1 (59188 downstream)																							GGTGGGCAACCTGGGCATGAC	0.522000													40	79					0	0	0	0
APLP2	334	broad.mit.edu	37	11	130005458	130005458	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr11:130005458A>G	uc010sby.1	+	13	1842	c.1685A>G	c.(1684-1686)GAT>GGT	p.D562G	APLP2_uc001qfp.2_Missense_Mutation_p.D562G|APLP2_uc001qfq.2_Missense_Mutation_p.D506G|APLP2_uc010sbz.1_Missense_Mutation_p.D350G|APLP2_uc001qfr.2_Missense_Mutation_p.D328G|APLP2_uc001qfs.2_Missense_Mutation_p.D333G|APLP2_uc001qfv.2_Missense_Mutation_p.D453G	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	562	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		TCTTCATCAGATGAGCTCCTT	0.587000													45	83					0	0	0	0
PLBD1	79887	broad.mit.edu	37	12	14706306	14706306	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:14706306C>G	uc001rcc.1	-	2	317	c.156G>C	c.(154-156)AAG>AAC	p.K52N		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	52					lipid catabolic process	extracellular region	hydrolase activity				0						CTTGTACTGTCTTTTCAGCAG	0.413000													26	38					0	0	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21467564	21467564	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:21467564C>G	uc001rer.2	-	3	505	c.254G>C	c.(253-255)AGA>ACA	p.R85T	SLCO1A2_uc001res.2_Missense_Mutation_p.R85T|SLCO1A2_uc010siq.1_Intron|SLCO1A2_uc010sio.1_Intron|SLCO1A2_uc010sip.1_Intron|SLCO1A2_uc001ret.2_Missense_Mutation_p.R83T|SLCO1A2_uc001reu.2_Missense_Mutation_p.R65T	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	85	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CATTATAGGTCTATGCAGTTT	0.328000													19	41					0	0	0	0
ITPR2	3709	broad.mit.edu	37	12	26808679	26808679	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:26808679G>A	uc001rhg.2	-	20	2968	c.2551C>T	c.(2551-2553)CCT>TCT	p.P851S		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	851	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					TCCCCAAAAGGAAAGGGCTGG	0.338000													37	61					0	0	0	0
FKBP11	51303	broad.mit.edu	37	12	49319149	49319149	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:49319149C>A	uc001rsp.2	-	1	182	c.63G>T	c.(61-63)GCG>GCT	p.A21A	FKBP11_uc010sma.1_5'Flank|FKBP11_uc001rsq.3_Silent_p.A21A|FKBP11_uc010smb.1_Silent_p.A21A	NM_016594	NP_057678	Q9NYL4	FKB11_HUMAN	FK506 binding protein 11 isoform 1 precursor	21					protein folding	integral to membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						CCCGGCACACCGCCGCACTGa	0.632000													3	25					0.00909568	0.00951548	1	0
KRT78	196374	broad.mit.edu	37	12	53241878	53241878	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:53241878C>T	uc001sbc.1	-	2	476	c.412G>A	c.(412-414)GTC>ATC	p.V138I		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	138	Coil 1A.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						GTCTCCAGGACCTTGTTCTGC	0.597000													11	32					0	0	0	0
MYO1A	4640	broad.mit.edu	37	12	57431381	57431381	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:57431381C>G	uc001smw.3	-	19	2249	c.2006G>C	c.(2005-2007)GGG>GCG	p.G669A	MYO1A_uc010sqz.1_Missense_Mutation_p.G507A|MYO1A_uc009zpd.2_Missense_Mutation_p.G669A	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	669	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GGCCAGCTCCCCCGAGGACAT	0.512000													107	229					0	0	0	0
OS9	10956	broad.mit.edu	37	12	58088661	58088661	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:58088661G>A	uc001spj.2	+	2	350	c.291G>A	c.(289-291)GGG>GGA	p.G97G	OS9_uc010srx.1_Silent_p.G97G|OS9_uc001spk.2_Silent_p.G97G|OS9_uc001spl.2_Silent_p.G97G|OS9_uc001spm.2_Silent_p.G97G|OS9_uc001spn.2_Silent_p.G97G|OS9_uc010sry.1_Silent_p.G97G|OS9_uc010srz.1_Intron	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	97					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			AAGGGCCTGGGATCCCTGAGT	0.522000													20	41					0	0	0	0
MIR26A2	407016	broad.mit.edu	37	12	58218400	58218400	+	RNA	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:58218400C>G	hsa-mir-26a-2|MI0000750	-			c.76C>G			CTDSP2_uc010ssg.1_5'Flank|CTDSP2_uc009zqf.2_Intron|CTDSP2_uc001sqm.2_Intron|CTDSP2_uc009zqg.2_Intron|uc001sqn.2_RNA																	0						TCAGCTGCCTCCAGAAACAAG	0.532000													15	20					0	0	0	0
SRGAP1	57522	broad.mit.edu	37	12	64521813	64521813	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:64521813G>A	uc010ssp.1	+	21	2769	c.2713G>A	c.(2713-2715)GAC>AAC	p.D905N	SRGAP1_uc001srv.2_Missense_Mutation_p.D842N	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	905					axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		CCTCAACAATGACAGTCCTGA	0.617000													31	54					0	0	0	0
PTPRB	5787	broad.mit.edu	37	12	71002999	71002999	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:71002999T>G	uc001swb.3	-	2	205	c.175A>C	c.(175-177)AGC>CGC	p.S59R	PTPRB_uc010sto.1_Missense_Mutation_p.S59R|PTPRB_uc010stp.1_Missense_Mutation_p.S59R|PTPRB_uc001swc.3_Missense_Mutation_p.S277R|PTPRB_uc001swa.3_Missense_Mutation_p.S277R|PTPRB_uc001swd.3_Missense_Mutation_p.S276R|PTPRB_uc009zrr.1_Missense_Mutation_p.S156R|PTPRB_uc001swe.2_Missense_Mutation_p.S277R	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	59	Fibronectin type-III 1.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			GTGTCACTGCTATAGATGAGG	0.498000													3	67					0	0	0	0
ANO4	121601	broad.mit.edu	37	12	101520815	101520815	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:101520815G>C	uc010svm.1	+	27	3407	c.2835G>C	c.(2833-2835)AAG>AAC	p.K945N	ANO4_uc001thw.2_Missense_Mutation_p.K910N|ANO4_uc001thx.2_Missense_Mutation_p.K945N|ANO4_uc001thy.2_Missense_Mutation_p.K465N	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	945	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AGAGGAAGAAGAATGGAAAAG	0.488000										HNSCC(74;0.22)			6	16					0	0	0	0
SELPLG	6404	broad.mit.edu	37	12	109017613	109017613	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:109017613C>T	uc001tni.2	-	2	631	c.471G>A	c.(469-471)ACG>ACA	p.T157T	SELPLG_uc001tnh.2_Silent_p.T147T|SELPLG_uc010sxe.1_Silent_p.T173T	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	157	Extracellular (Potential).|12 X 10 AA tandem repeats.				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						CCTCCGTGGCCGTCAGTCGAG	0.637000													53	78					0	0	0	0
CUX2	23316	broad.mit.edu	37	12	111746236	111746236	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:111746236G>A	uc001tsa.1	+	14	1317	c.1164G>A	c.(1162-1164)ATG>ATA	p.M388I		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	388						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CCTAGGGCATGGCCAAGCCTG	0.612000													18	27					0	0	0	0
RNF10	9921	broad.mit.edu	37	12	121000765	121000765	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:121000765G>T	uc001typ.3	+	8	1629	c.1146G>T	c.(1144-1146)CTG>CTT	p.L382L	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Silent_p.L288L	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	382					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AAGAGGCTCTGTCGGGATTGG	0.537000													30	48					6.00712e-18	7.32707e-18	1	0
HNF1A	6927	broad.mit.edu	37	12	121434487	121434487	+	Silent	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:121434487T>A	uc001tzg.2	+	6	1274	c.1251T>A	c.(1249-1251)GGT>GGA	p.G417G	HNF1A_uc001tze.1_Silent_p.G417G|HNF1A_uc001tzf.2_Silent_p.G417G|HNF1A_uc010szn.1_Silent_p.G417G	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	417					glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TCGGGCCTGGTGAGCCTGCCT	0.632000									Hepatic_Adenoma_Familial_Clustering_of				19	32					0	0	0	0
WDR66	144406	broad.mit.edu	37	12	122361573	122361573	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:122361573G>A	uc009zxk.2	+	3	566	c.424G>A	c.(424-426)GAT>AAT	p.D142N		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	142							calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		ACAATTGGAGGATGCAGAAAC	0.363000													23	61					0	0	0	0
POLE	5426	broad.mit.edu	37	12	133249289	133249289	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:133249289T>C	uc001uks.1	-	15	1654	c.1610A>G	c.(1609-1611)GAG>GGG	p.E537G	POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.E510G	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	537					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GACGTAGGTCTCAGAGTCCAG	0.577000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					31	64					0	0	0	0
RNF17	56163	broad.mit.edu	37	13	25448319	25448319	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:25448319A>T	uc001upr.2	+	33	4556	c.4515A>T	c.(4513-4515)GAA>GAT	p.E1505D	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E1501D|RNF17_uc001ups.2_Missense_Mutation_p.E1444D|RNF17_uc010aac.2_Missense_Mutation_p.E697D|RNF17_uc010aad.2_Missense_Mutation_p.E515D	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1505	Tudor 4.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CCATTAAAGAATTTAATCCTT	0.328000													31	36					0	0	0	0
N4BP2L2	10443	broad.mit.edu	37	13	33111164	33111164	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:33111164T>A	uc001uuk.3	-	2	179	c.1A>T	c.(1-3)ATG>TTG	p.M1L	N4BP2L2_uc010abe.1_Missense_Mutation_p.M1L|N4BP2L2_uc010tdz.1_Intron|N4BP2L2_uc001uul.1_Missense_Mutation_p.M1L|N4BP2L2_uc001uum.2_5'Flank	NM_014887	NP_055702	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5	1											0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		CCATAAGACATCTGAGAAATA	0.284000													10	14					0	0	0	0
NBEA	26960	broad.mit.edu	37	13	35619136	35619137	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:35619136_35619137GG>AA	uc001uvb.2	+	4	785_786	c.579_580GG>AA	c.(577-582)AAGGAG>AAAAAG	p.E194K		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	194						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCACTGTCAAGGAGTTGAAGCT	0.416000													9	14					0	0	0	0
PCDH8	5100	broad.mit.edu	37	13	53419596	53419596	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:53419596C>T	uc001vhi.2	-	2	3006	c.2803G>A	c.(2803-2805)GCT>ACT	p.A935T	PCDH8_uc001vhj.2_Missense_Mutation_p.A838T	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	935	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		TTTTTCAGAGCGTCCCCGCTG	0.522000													7	74					0	0	0	0
MYCBP2	23077	broad.mit.edu	37	13	77632376	77632376	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:77632376G>A	uc001vkf.2	-	79	13283	c.13192C>T	c.(13192-13194)CTC>TTC	p.L4398F	MYCBP2_uc010aev.2_Missense_Mutation_p.L3802F|MYCBP2_uc001vke.2_Missense_Mutation_p.L1015F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4398	RING-type; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GCTGCCGAGAGCGCTTCGGTG	0.458000													49	105					0	0	0	0
SLITRK5	26050	broad.mit.edu	37	13	88329860	88329860	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:88329860C>A	uc001vln.2	+	2	2436	c.2217C>A	c.(2215-2217)CCC>CCA	p.P739P	SLITRK5_uc010tic.1_Silent_p.P498P	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	739	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CCGCGCTGCCCAAGGTGAAGA	0.667000													37	101					1.90571e-15	2.27348e-15	1	0
GPC6	10082	broad.mit.edu	37	13	95055462	95055462	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:95055462G>T	uc001vlt.2	+	9	2291	c.1659G>T	c.(1657-1659)CTG>CTT	p.L553L		NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	553						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				TGCAGAGACTGTGCAGATAAT	0.517000													6	41					8.12818e-05	8.67006e-05	1	0
DOCK9	23348	broad.mit.edu	37	13	99566619	99566619	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:99566619C>T	uc001vnt.2	-	9	981	c.926G>A	c.(925-927)GGT>GAT	p.G309D	DOCK9_uc001vnw.2_Missense_Mutation_p.G308D|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.G309D|DOCK9_uc010tis.1_Missense_Mutation_p.G308D|DOCK9_uc010tit.1_Missense_Mutation_p.G309D|DOCK9_uc010afu.1_Missense_Mutation_p.G124D	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	309					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TAAACCGGAACCAGAACCTTC	0.393000													5	13					0	0	0	0
MYO16	23026	broad.mit.edu	37	13	109475526	109475526	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:109475526T>A	uc001vqt.1	+	9	1057	c.931T>A	c.(931-933)TGG>AGG	p.W311R	MYO16_uc010agk.1_Missense_Mutation_p.W333R|MYO16_uc001vqu.1_Missense_Mutation_p.W111R	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	311					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			CGAAATTGCCTGGGAAGAAAA	0.393000													48	141					0	0	0	0
ARHGEF7	8874	broad.mit.edu	37	13	111919973	111919973	+	Silent	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:111919973T>C	uc001vrs.2	+	10	1342	c.1092T>C	c.(1090-1092)TAT>TAC	p.Y364Y	ARHGEF7_uc001vrr.2_Silent_p.Y343Y|ARHGEF7_uc001vrt.2_Silent_p.Y314Y|ARHGEF7_uc010tjn.1_RNA|ARHGEF7_uc001vru.1_Silent_p.Y186Y|ARHGEF7_uc001vrv.3_Silent_p.Y186Y|ARHGEF7_uc001vrw.3_Silent_p.Y186Y|ARHGEF7_uc001vrx.3_Silent_p.Y186Y|ARHGEF7_uc010tjo.1_Silent_p.Y261Y|ARHGEF7_uc010tjp.1_Silent_p.Y108Y|ARHGEF7_uc010agn.1_Silent_p.Y108Y	NM_001113511	NP_001106983	Q14155	ARHG7_HUMAN	PAK-interacting exchange factor beta isoform c	364	DH.				apoptosis|epidermal growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_lung(23;3.96e-05)|Lung NSC(43;0.00156)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.188)			ACCTCACGTATTGTGCCAATC	0.532000													30	60					0	0	0	0
OR11H4	390442	broad.mit.edu	37	14	20711094	20711094	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr14:20711094C>T	uc010tld.1	+	1	144	c.144C>T	c.(142-144)ACC>ACT	p.T48T		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	48	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		ATGTCTTGACCTTGCTGGGAA	0.443000													30	60					0	0	0	0
TOX4	9878	broad.mit.edu	37	14	21955828	21955828	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr14:21955828G>A	uc001waz.2	+	3	397	c.294G>A	c.(292-294)GGG>GGA	p.G98G	TOX4_uc001way.2_5'UTR|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Silent_p.G75G|TOX4_uc010tlv.1_Intron	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	98						chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		AGGGCGGGGGGCTCCTGAGTG	0.557000													35	55					0	0	0	0
CTAGE5	4253	broad.mit.edu	37	14	39764138	39764138	+	Missense_Mutation	SNP	A	G	G	rs150627486	byFrequency	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr14:39764138A>G	uc001wvg.3	+	8	913	c.577A>G	c.(577-579)ACC>GCC	p.T193A	CTAGE5_uc010tqe.1_Missense_Mutation_p.T155A|CTAGE5_uc001wuz.3_Missense_Mutation_p.T181A|CTAGE5_uc001wuy.3_Missense_Mutation_p.T113A|CTAGE5_uc001wvb.3_Missense_Mutation_p.T164A|CTAGE5_uc001wvc.3_Missense_Mutation_p.T138A|CTAGE5_uc001wva.3_Missense_Mutation_p.T164A|CTAGE5_uc001wve.1_Missense_Mutation_p.T169A|CTAGE5_uc001wvh.3_Missense_Mutation_p.T193A|CTAGE5_uc001wvf.3_Missense_Mutation_p.T118A|CTAGE5_uc001wvi.3_Missense_Mutation_p.T198A|CTAGE5_uc010amz.2_5'UTR|CTAGE5_uc001wvj.3_Missense_Mutation_p.T164A	NM_005930	NP_005921	O15320	CTGE5_HUMAN	CTAGE family, member 5 isoform 1	193	Potential.						enzyme activator activity|protein binding				0	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0475)		GGCCAAAATGACCTTCAAGAT	0.313000													4	88					0	0	0	0
NIN	51199	broad.mit.edu	37	14	51259494	51259494	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr14:51259494G>A	uc001wym.2	-	5	562	c.371C>T	c.(370-372)ACG>ATG	p.T124M	NIN_uc001wyi.2_Missense_Mutation_p.T124M|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.T124M|NIN_uc010tqp.1_Missense_Mutation_p.T130M|NIN_uc001wyo.2_Missense_Mutation_p.T124M|NIN_uc001wyp.1_Missense_Mutation_p.T86M	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	124					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					CTCAATCACCGTCACTTCAGG	0.542000			T	PDGFRB	MPD								26	45					0	0	0	0
PRKCH	5583	broad.mit.edu	37	14	61917604	61917604	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr14:61917604C>T	uc001xfn.2	+	6	1052	c.747C>T	c.(745-747)AGC>AGT	p.S249S	PRKCH_uc010tsa.1_Silent_p.S88S	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	249	Phorbol-ester/DAG-type 2.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		ACAAGTTCAGCATCCACAACT	0.438000													23	38					0	0	0	0
ALKBH1	8846	broad.mit.edu	37	14	78161201	78161201	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr14:78161201C>T	uc001xuc.1	-	3	344	c.335G>A	c.(334-336)TGG>TAG	p.W112*	ALKBH1_uc001xud.1_Intron	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	112					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		CACCCAGTGCCACTGGTAACC	0.418000													27	51					0	0	0	0
RCOR1	23186	broad.mit.edu	37	14	103148296	103148296	+	Silent	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr14:103148296A>G	uc001ymb.2	+	3	417	c.417A>G	c.(415-417)CAA>CAG	p.Q139Q		NM_015156	NP_055971	Q9UKL0	RCOR1_HUMAN	REST corepressor 1	139	Interaction with HDAC1.|ELM2.				blood coagulation|histone H4 deacetylation|interspecies interaction between organisms	transcriptional repressor complex	protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription regulatory region DNA binding			ovary(1)	1						CACCCAATCAAAATCTGTCAG	0.373000													13	18					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	107062535	107062535	+	RNA	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr14:107062535C>G	uc010tyt.1	-	130		c.6143G>C								Parts of antibodies, mostly variable regions.												0						CTGCCACCAGCAGGAGGAAGA	0.512000													4	45					0	0	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890016	23890016	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:23890016C>T	uc001ywj.3	-	1	1160	c.1065G>A	c.(1063-1065)TGG>TGA	p.W355*		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		TGGGCCCTTCCCAGCCACTCA	0.672000													19	29					0	0	0	0
C15orf55	256646	broad.mit.edu	37	15	34640628	34640628	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:34640628C>T	uc001zif.2	+	2	630	c.475C>T	c.(475-477)CCG>TCG	p.P159S	C15orf55_uc010ucc.1_Missense_Mutation_p.P187S|C15orf55_uc010ucd.1_Missense_Mutation_p.P177S	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	159	Pro-rich.					cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		TCCAGGCCTTCCGCCTCAGCC	0.587000			T	BRD3|BRD4	lethal midline carcinoma								11	28					0	0	0	0
TMEM87A	25963	broad.mit.edu	37	15	42560198	42560198	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:42560198T>C	uc010udd.1	-	3	397	c.238A>G	c.(238-240)ATA>GTA	p.I80V	TMEM87A_uc001zpf.3_Missense_Mutation_p.I19V|TMEM87A_uc010bcu.1_Missense_Mutation_p.I19V|TMEM87A_uc001zpg.2_Missense_Mutation_p.I80V	NM_015497	NP_056312	Q8NBN3	TM87A_HUMAN	transmembrane protein 87A isoform 1	80						integral to membrane				ovary(1)	1		all_cancers(109;4.28e-16)|all_epithelial(112;1.04e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;1.03e-06)		TACCAGGTTATATTCAAAGAC	0.259000													25	46					0	0	0	0
TRPM7	54822	broad.mit.edu	37	15	50906377	50906378	+	Missense_Mutation	DNP	GC	AT	AT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:50906377_50906378GC>AT	uc001zyt.3	-	14	1841_1842	c.1577_1578GC>AT	c.(1576-1578)TGC>TAT	p.C526Y	TRPM7_uc010bew.1_Missense_Mutation_p.C526Y|TRPM7_uc001zyu.2_Missense_Mutation_p.C84Y	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	526	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TAGTATAGGTGCATCTGTAGGT	0.327000													18	38					0	0	0	0
NARG2	79664	broad.mit.edu	37	15	60741642	60741642	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:60741642C>G	uc002agp.2	-	10	1759	c.1524G>C	c.(1522-1524)TTG>TTC	p.L508F	NARG2_uc002ago.2_Missense_Mutation_p.L371F|NARG2_uc002agq.3_Missense_Mutation_p.L176F	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	508						nucleus				ovary(1)|lung(1)	2						CAGATGTTTTCAAGTCACTAT	0.333000													28	51					0	0	0	0
C15orf39	56905	broad.mit.edu	37	15	75498857	75498857	+	Silent	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:75498857T>C	uc002azp.3	+	2	788	c.468T>C	c.(466-468)GAT>GAC	p.D156D	C15orf39_uc002azq.3_Silent_p.D156D|C15orf39_uc002azr.3_5'Flank	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	156											0						GGCCACTGGATGTTGACTGGA	0.622000													37	66					0	0	0	0
CSPG4	1464	broad.mit.edu	37	15	75983101	75983101	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:75983101G>A	uc002baw.2	-	3	398	c.305C>T	c.(304-306)ACG>ATG	p.T102M		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	102	Extracellular (Potential).|Globular or compact configuration stabilized by disulfide bonds.|Laminin G-like 1.|Neurite growth inhibition (By similarity).				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						ACTCAGCAGCGTCTCTGCTGG	0.582000													29	66					0	0	0	0
XYLT1	64131	broad.mit.edu	37	16	17292261	17292261	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr16:17292261T>A	uc002dfa.2	-	5	1182	c.1097A>T	c.(1096-1098)TAC>TTC	p.Y366F		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	366	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CCGATGCAGGTAATTAGAGCG	0.587000													10	17					0	0	0	0
ACSM3	6296	broad.mit.edu	37	16	20797459	20797459	+	Silent	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr16:20797459T>G	uc002dhr.2	+	9	1390	c.1203T>G	c.(1201-1203)CCT>CCG	p.P401P	ACSM3_uc002dhq.2_Silent_p.P401P|ACSM3_uc010vba.1_Silent_p.P430P|ERI2_uc002dhs.2_Intron	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	401					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						TGGGAAAACCTTCTCCTGCTT	0.388000													15	23					0	0	0	0
EARS2	124454	broad.mit.edu	37	16	23563530	23563530	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr16:23563530C>G	uc002dlt.3	-	2	267	c.235G>C	c.(235-237)GAT>CAT	p.D79H	EARS2_uc002dlr.3_5'Flank|EARS2_uc002dls.3_RNA|EARS2_uc002dlu.2_Missense_Mutation_p.D79H	NM_001083614	NP_001077083	Q5JPH6	SYEM_HUMAN	glutamyl-tRNA synthetase 2 precursor	79					glutamyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|glutamate-tRNA ligase activity|RNA binding				0				GBM - Glioblastoma multiforme(48;0.0353)	L-Glutamic Acid(DB00142)	CGAGTCTGATCTGTGTCCTCT	0.547000													35	71					0	0	0	0
MAZ	4150	broad.mit.edu	37	16	29820025	29820025	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr16:29820025C>G	uc002dty.2	+	4	1410	c.1242C>G	c.(1240-1242)AGC>AGG	p.S414R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MAZ_uc002dtv.1_Intron|MAZ_uc010vdx.1_Missense_Mutation_p.S391R|MAZ_uc002dtw.2_Intron|MAZ_uc002dtx.2_Missense_Mutation_p.S414R|MAZ_uc010bzg.2_Missense_Mutation_p.S109R|MAZ_uc002dtz.1_3'UTR|MAZ_uc002dua.2_Missense_Mutation_p.S15R|MAZ_uc010vdy.1_Missense_Mutation_p.S15R|uc002duc.1_RNA	NM_002383	NP_002374	P56270	MAZ_HUMAN	MYC-associated zinc finger protein isoform 1	414					regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription|transcription initiation from RNA polymerase II promoter	nucleus	DNA binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1						AGGTGCACAGCCAGGGTCCTC	0.612000													12	18					0	0	0	0
FBXL19	54620	broad.mit.edu	37	16	30958233	30958233	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr16:30958233C>G	uc002eab.2	+	10	2028	c.1870C>G	c.(1870-1872)CCA>GCA	p.P624A	FBXL19_uc002dzz.1_Missense_Mutation_p.P312A|FBXL19_uc002eaa.1_Missense_Mutation_p.P523A|ORAI3_uc002eac.2_5'Flank	NM_001099784	NP_001093254	Q6PCT2	FXL19_HUMAN	F-box and leucine-rich repeat protein 19	624	LRR 4.						DNA binding|zinc ion binding			ovary(2)|lung(1)|breast(1)	4						CCCCACGTCCCCACTCCGCGA	0.682000													5	14					0	0	0	0
ACAP1	9744	broad.mit.edu	37	17	7251469	7251469	+	Silent	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:7251469C>G	uc002ggd.2	+	16	1643	c.1437C>G	c.(1435-1437)GTC>GTG	p.V479V		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	479	Arf-GAP.|Required for interaction with GULP1.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						TGGGAAATGTCATCATCAACC	0.617000													7	24					0	0	0	0
CNTROB	116840	broad.mit.edu	37	17	7839728	7839728	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:7839728G>C	uc002gjq.2	+	6	1558	c.639G>C	c.(637-639)GAG>GAC	p.E213D	CNTROB_uc002gjp.2_Missense_Mutation_p.E213D|CNTROB_uc002gjr.2_Missense_Mutation_p.E115D|CNTROB_uc010vum.1_5'Flank	NM_053051	NP_444279	Q8N137	CNTRB_HUMAN	centrobin, centrosomal BRCA2 interacting protein	213	Potential.				centriole replication|centrosome separation|cytokinesis	centriole	protein domain specific binding			breast(1)|central_nervous_system(1)	2		Prostate(122;0.173)				GAGTGTTAGAGCTACAGCAAC	0.527000													38	98					0	0	0	0
RASD1	51655	broad.mit.edu	37	17	17399294	17399294	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:17399294G>T	uc002gri.2	-	1	414	c.202C>A	c.(202-204)CGC>AGC	p.R68S		NM_016084	NP_057168	Q9Y272	RASD1_HUMAN	RAS, dexamethasone-induced 1 precursor	68					G-protein coupled receptor protein signaling pathway|small GTPase mediated signal transduction	nucleus|perinuclear region of cytoplasm|plasma membrane	GTP binding|GTPase activity				0						ACCTCGCCGCGGATGGAGTAG	0.672000													15	72					3.41278e-10	3.90032e-10	1	0
PRPSAP2	5636	broad.mit.edu	37	17	18833957	18833957	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:18833957C>T	uc002gup.1	+	12	1267	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	PRPSAP2_uc002guo.1_Silent_p.I266I|PRPSAP2_uc010vyi.1_Silent_p.I300I|PRPSAP2_uc010vyj.1_Silent_p.I266I|PRPSAP2_uc010vyk.1_Silent_p.I291I|PRPSAP2_uc002guq.1_Silent_p.I139I	NM_002767	NP_002758	O60256	KPRB_HUMAN	phosphoribosyl pyrophosphate	352					nucleotide biosynthetic process		enzyme inhibitor activity|magnesium ion binding|ribose phosphate diphosphokinase activity			skin(1)	1						TCCGTCGGATCCACAATGGGG	0.458000													12	23					0	0	0	0
CYTSB	92521	broad.mit.edu	37	17	20108048	20108048	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:20108048T>C	uc002gwq.2	+	4	831	c.686T>C	c.(685-687)CTT>CCT	p.L229P	CYTSB_uc010cqx.2_Missense_Mutation_p.L229P|CYTSB_uc002gwr.2_Missense_Mutation_p.L229P|CYTSB_uc002gws.2_Missense_Mutation_p.L229P|CYTSB_uc002gwv.2_Missense_Mutation_p.L148P|CYTSB_uc010vzf.1_Intron|CYTSB_uc002gww.2_Missense_Mutation_p.L5P|CYTSB_uc002gwt.2_Missense_Mutation_p.L148P|CYTSB_uc002gwu.2_Missense_Mutation_p.L148P	NM_001033553	NP_001028725	Q5M775	CYTSB_HUMAN	spectrin domain with coiled-coils 1 NSP5b3b	229						nucleus					0						ATAAGAGCTCTTGAGGAGAAG	0.478000													33	153					0	0	0	0
SEZ6	124925	broad.mit.edu	37	17	27283247	27283247	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:27283247C>G	uc002hdp.2	-	16	3076	c.2882G>C	c.(2881-2883)CGC>CCC	p.R961P	SEZ6_uc010crx.1_Intron|SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.R961P|SEZ6_uc002hdq.1_Missense_Mutation_p.R836P	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	961	Cytoplasmic (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			ggggcgggggcggggCAGCTG	0.478000													3	13					0	0	0	0
GGNBP2	79893	broad.mit.edu	37	17	34943490	34943490	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:34943490C>T	uc002hnb.2	+	13	1954	c.1705C>T	c.(1705-1707)CAC>TAC	p.H569Y		NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	569					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		AAATACCATGCACACAGTGTT	0.463000													14	64					0	0	0	0
KRT25	147183	broad.mit.edu	37	17	38910653	38910653	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:38910653T>G	uc002hve.2	-	2	558	c.497A>C	c.(496-498)GAT>GCT	p.D166A		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	166	Rod.|Coil 1B.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TCTGAAATCATCAGCTGTAAG	0.383000													29	67					0	0	0	0
PLEKHH3	79990	broad.mit.edu	37	17	40823110	40823111	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:40823110_40823111CC>GT	uc002iau.2	-	9	1789_1790	c.1322_1323GG>AC	c.(1321-1323)CGG>CAC	p.R441H	PLEKHH3_uc010cyl.1_Intron|PLEKHH3_uc002iat.1_RNA|PLEKHH3_uc002iav.2_RNA|PLEKHH3_uc010cym.1_Intron|PLEKHH3_uc002iaw.2_Missense_Mutation_p.R441H	NM_024927	NP_079203	Q7Z736	PKHH3_HUMAN	pleckstrin homology domain containing, family H	441	FERM.				signal transduction	cytoskeleton				large_intestine(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.14)		CGTTGCGGCTCCGGGCCAAGCC	0.663000													33	56					0	0	0	0
MARCH10	162333	broad.mit.edu	37	17	60821758	60821758	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:60821758C>A	uc010ddr.2	-	5	752	c.514G>T	c.(514-516)GTG>TTG	p.V172L	MARCH10_uc002jag.3_Missense_Mutation_p.V172L|MARCH10_uc010dds.2_Missense_Mutation_p.V210L|MARCH10_uc002jah.2_Missense_Mutation_p.V171L	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	172							ligase activity|zinc ion binding				0						GGAACCGGCACCTTTGCAGGC	0.557000													52	96					3.89483e-19	4.79363e-19	1	0
TEX2	55852	broad.mit.edu	37	17	62290905	62290905	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:62290905T>A	uc002jec.2	-	2	846	c.673A>T	c.(673-675)ACT>TCT	p.T225S	TEX2_uc002jed.2_Missense_Mutation_p.T225S|TEX2_uc002jee.2_Missense_Mutation_p.T225S	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	225					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		TGCCGGGAAGTGTCCGTGGAC	0.532000													41	58					0	0	0	0
SLC16A6	9120	broad.mit.edu	37	17	66267356	66267356	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:66267356G>A	uc002jgz.1	-	5	1133	c.945C>T	c.(943-945)ATC>ATT	p.I315I	ARSG_uc002jhc.2_Intron|SLC16A6_uc002jha.1_Silent_p.I315I	NM_004694	NP_004685	O15403	MOT7_HUMAN	solute carrier family 16, member 6	315	Helical; (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity				0	all_cancers(12;1.24e-09)		BRCA - Breast invasive adenocarcinoma(8;3.17e-08)|LUSC - Lung squamous cell carcinoma(166;0.24)		Pyruvic acid(DB00119)	CCAGAGGAATGATGTACAAGG	0.423000													12	24					0	0	0	0
PYCR1	5831	broad.mit.edu	37	17	79892538	79892538	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:79892538C>T	uc002kcr.1	-	5	902	c.624G>A	c.(622-624)CAG>CAA	p.Q208Q	PYCR1_uc002kcq.1_Silent_p.Q208Q|PYCR1_uc002kcp.2_Silent_p.Q208Q|PYCR1_uc002kcs.1_Silent_p.Q208Q|PYCR1_uc010wvd.1_Silent_p.Q235Q|PYCR1_uc002kct.1_Silent_p.Q208Q|PYCR1_uc002kcu.1_Intron|PYCR1_uc010wve.1_Intron	NM_006907	NP_008838	P32322	P5CR1_HUMAN	pyrroline-5-carboxylate reductase 1 isoform 1	208					cellular response to oxidative stress|proline biosynthetic process	mitochondrial matrix	binding|pyrroline-5-carboxylate reductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)		L-Proline(DB00172)|NADH(DB00157)	CCAGGAGGGCCTGGGCCCCGA	0.662000													3	5					0	0	0	0
MC5R	4161	broad.mit.edu	37	18	13826439	13826439	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr18:13826439C>A	uc010xaf.1	+	1	675	c.675C>A	c.(673-675)GCC>GCA	p.A225A		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	225	Cytoplasmic (Potential).			ALPGASSARQRTSM -> LCPGPALRGRGPAW (in Ref. 1).	G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						TGCCCGGGGCCAGCTCTGCGC	0.622000													87	179					3.56499e-28	4.44806e-28	1	0
ZNF521	25925	broad.mit.edu	37	18	22807174	22807174	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr18:22807174C>T	uc002kvk.2	-	4	955	c.708G>A	c.(706-708)AGG>AGA	p.R236R	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.R236R|ZNF521_uc002kvl.2_Silent_p.R16R	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	236					cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					AGTCCTCCATCCTGGAACCGG	0.522000			T	PAX5	ALL								13	67					0	0	0	0
NARS	4677	broad.mit.edu	37	18	55283091	55283091	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr18:55283091C>A	uc002lgs.2	-	3	438	c.210G>T	c.(208-210)TGG>TGT	p.W70C	NARS_uc002lgt.2_Missense_Mutation_p.W69C|NARS_uc010xea.1_5'UTR|NARS_uc010xeb.1_RNA|NARS_uc010xec.1_Missense_Mutation_p.W70C|NARS_uc010xed.1_Missense_Mutation_p.W37C	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	70					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	GTTCCCTATGCCACATCTTTT	0.388000													22	55					1.87028e-06	2.05128e-06	1	0
LRG1	116844	broad.mit.edu	37	19	4538051	4538051	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:4538051C>T	uc002mau.2	-	2	956	c.945G>A	c.(943-945)CAG>CAA	p.Q315Q	PLIN5_uc002mas.2_5'Flank|PLIN5_uc002mat.1_Intron	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	315	LRRCT.					extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTTTTGGGCCTGAAGCCAAC	0.592000													40	35					0	0	0	0
MUC16	94025	broad.mit.edu	37	19	9088493	9088493	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:9088493C>G	uc002mkp.2	-	1	3526	c.3322G>C	c.(3322-3324)GAT>CAT	p.D1108H		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1108	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGACATCATCAGAAAATGTG	0.443000													18	36					0	0	0	0
PPAN-P2RY11	692312	broad.mit.edu	37	19	10225320	10225320	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:10225320C>G	uc002mna.2	+	13	2291	c.2291C>G	c.(2290-2292)CCA>CGA	p.P764R	PPAN-P2RY11_uc010xla.1_3'UTR|P2RY11_uc002mnc.2_Missense_Mutation_p.P344R	NM_001040664	NP_001035754	Q9NQ55	SSF1_HUMAN	PPAN-P2RY11 protein	Error:Variant_position_missing_in_Q9NQ55_after_alignment					RNA splicing	nucleolus	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			AGCTGGAACCCAGAGGACGCC	0.657000													14	50					0	0	0	0
ZNF763	284390	broad.mit.edu	37	19	12088200	12088200	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:12088200G>T	uc002msw.2	+	3	300	c.145G>T	c.(145-147)GAC>TAC	p.D49Y	ZNF763_uc010xmf.1_Missense_Mutation_p.D69Y|ZNF763_uc002msv.2_Missense_Mutation_p.D52Y|ZNF763_uc010xmg.1_Intron	NM_001012753	NP_001012771	Q0D2J5	ZN763_HUMAN	zinc finger protein 763	49	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						AAAGTGGAAAGACCAGAACAT	0.333000													18	32					2.35188e-11	2.71064e-11	1	0
SYDE1	85360	broad.mit.edu	37	19	15222125	15222125	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:15222125T>C	uc002nah.1	+	5	1323	c.1292T>C	c.(1291-1293)GTA>GCA	p.V431A	SYDE1_uc002nai.1_Missense_Mutation_p.V364A|SYDE1_uc002naj.1_Missense_Mutation_p.V88A	NM_033025	NP_149014	Q6ZW31	SYDE1_HUMAN	synapse defective 1, Rho GTPase, homolog 1	431	Rho-GAP.				activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|pancreas(1)	2						CACCCCCAGGTAGTGGGACTG	0.587000													33	22					0	0	0	0
ATP13A1	57130	broad.mit.edu	37	19	19766741	19766741	+	Silent	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:19766741C>G	uc002nnh.3	-	9	1243	c.1215G>C	c.(1213-1215)CCG>CCC	p.P405P	ATP13A1_uc002nnf.3_5'Flank|ATP13A1_uc002nng.2_Silent_p.P287P	NM_020410	NP_065143	Q9HD20	AT131_HUMAN	ATPase type 13A1	405	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding	p.?(1)		ovary(3)|large_intestine(2)|central_nervous_system(1)	6						CGCTGTCAACCGCTGGGGAGA	0.652000													4	16					0	0	0	0
APLP1	333	broad.mit.edu	37	19	36368688	36368688	+	Missense_Mutation	SNP	G	A	A	rs142258705		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:36368688G>A	uc002oce.2	+	12	1651	c.1513G>A	c.(1513-1515)GAG>AAG	p.E505K	APLP1_uc010xsz.1_Missense_Mutation_p.E466K|APLP1_uc002ocf.2_Missense_Mutation_p.E505K|APLP1_uc002ocg.2_Missense_Mutation_p.E408K|APLP1_uc010xta.1_Missense_Mutation_p.E499K	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	505	Extracellular (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGCAGCAGCGAGGACAAGGG	0.582000													17	44					0	0	0	0
ZNF571	51276	broad.mit.edu	37	19	38057174	38057174	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:38057174C>T	uc002ogt.2	-	4	257	c.156G>A	c.(154-156)GTG>GTA	p.V52V	uc002ogm.2_Intron|uc002ogn.2_Intron|ZNF540_uc002ogo.2_Intron|ZNF540_uc002ogp.2_Intron|ZNF540_uc002ogq.2_Intron|ZNF571_uc002ogr.1_Intron|uc002ogs.1_5'Flank|ZNF571_uc010efp.2_Silent_p.V52V	NM_016536	NP_057620	Q7Z3V5	ZN571_HUMAN	zinc finger protein 571	52	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			ACTTTTTGGTCACACAACTGG	0.338000													16	51					0	0	0	0
PSG6	5675	broad.mit.edu	37	19	43529018	43529018	+	Silent	SNP	G	A	A	rs138426313		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:43529018G>A	uc002ovh.1	-	2	362	c.273C>T	c.(271-273)GAC>GAT	p.D91D	PSG11_uc002ouw.2_Silent_p.D91D|PSG10_uc002ouv.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.D91D|PSG11_uc002ovm.1_Silent_p.D85D|PSG11_uc002ovn.1_Silent_p.D91D|PSG11_uc002ovo.1_Intron|PSG11_uc002ovp.1_Intron			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TTATTTGACCGTCTACTACAT	0.443000													56	179					0	0	0	0
TEX101	83639	broad.mit.edu	37	19	43920656	43920656	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:43920656T>C	uc010xwo.1	+	4	535	c.340T>C	c.(340-342)TGT>CGT	p.C114R	TEX101_uc002owk.2_Missense_Mutation_p.C132R	NM_001130011	NP_001123483	Q9BY14	TX101_HUMAN	testis expressed 101 isoform 2	114						anchored to membrane|plasma membrane				ovary(1)	1		Prostate(69;0.0199)				GGATTCCTTCTGTAATGACAA	0.507000													98	142					0	0	0	0
FOSB	2354	broad.mit.edu	37	19	45971882	45971882	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:45971882C>T	uc002pbx.3	+	1	630	c.38C>T	c.(37-39)TCC>TTC	p.S13F	ERCC1_uc002pbu.1_Intron|FOSB_uc002pbw.2_Missense_Mutation_p.S13F|FOSB_uc010eke.2_Missense_Mutation_p.S13F|FOSB_uc002pby.3_Missense_Mutation_p.S13F|FOSB_uc010eka.1_Missense_Mutation_p.S13F|FOSB_uc010ekb.1_Missense_Mutation_p.S13F|FOSB_uc010ekc.1_Missense_Mutation_p.S13F|FOSB_uc010ekf.2_Missense_Mutation_p.S13F|FOSB_uc010ekd.1_Missense_Mutation_p.S13F|FOSB_uc010ekg.2_Missense_Mutation_p.S13F|FOSB_uc002pca.3_5'Flank	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	13					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		GACTCCGGCTCCCGGTGCAGC	0.632000													56	66					0	0	0	0
RUVBL2	10856	broad.mit.edu	37	19	49497072	49497072	+	5'Flank	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:49497072C>G	uc002plr.1	+						GYS1_uc010xzy.1_5'Flank|GYS1_uc002plp.2_5'Flank|GYS1_uc010emm.2_5'Flank|GYS1_uc010xzz.1_5'Flank|GYS1_uc010yaa.1_5'Flank|RUVBL2_uc002plq.1_Translation_Start_Site|RUVBL2_uc010yab.1_5'Flank|RUVBL2_uc002pls.1_5'Flank|RUVBL2_uc010emn.1_5'Flank|RUVBL2_uc010yac.1_5'Flank	NM_006666	NP_006657	Q9Y230	RUVB2_HUMAN	RuvB-like 2						cellular response to UV|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|protein folding|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex|membrane|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|ATP-dependent DNA helicase activity|damaged DNA binding|identical protein binding|unfolded protein binding				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000449)|OV - Ovarian serous cystadenocarcinoma(262;0.000555)|GBM - Glioblastoma multiforme(486;0.00585)|Epithelial(262;0.047)		GAGGAACCATCGAGATCTTTG	0.572000													3	15					0	0	0	0
ZNF347	84671	broad.mit.edu	37	19	53644866	53644866	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:53644866T>A	uc002qbb.1	-	5	1284	c.1215A>T	c.(1213-1215)GAA>GAT	p.E405D	ZNF347_uc010eql.1_Missense_Mutation_p.E406D|ZNF347_uc002qbc.1_Missense_Mutation_p.E406D	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	405	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		CCTTGCCACATTCATTACATT	0.423000													42	60					0	0	0	0
NLRP11	204801	broad.mit.edu	37	19	56303779	56303779	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:56303779A>G	uc010ygf.1	-	9	3112	c.2401T>C	c.(2401-2403)TTC>CTC	p.F801L	NLRP11_uc002qlz.2_Missense_Mutation_p.F648L|NLRP11_uc002qmb.2_Missense_Mutation_p.F702L|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	801							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GTTGGGCTGAACAGAAGCACT	0.473000													9	78					0	0	0	0
ZNF71	58491	broad.mit.edu	37	19	57133864	57133864	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:57133864G>T	uc002qnm.3	+	3	1447	c.1209G>T	c.(1207-1209)GTG>GTT	p.V403V		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	403	C2H2-type 10.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		ACCAGATCGTGCACACCGGGG	0.647000													15	47					8.60227e-14	1.00854e-13	1	0
ZNF211	10520	broad.mit.edu	37	19	58132578	58132578	+	Translation_Start_Site	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:58132578G>T	uc010yhb.1	+	1	785	c.-322G>T	c.(-324--320)GAGGG>GATGG		ZNF134_uc002qpo.2_Missense_Mutation_p.R191M|ZNF134_uc002qpn.2_Missense_Mutation_p.R364M	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GCACACCAGAGGGTTCACACT	0.438000													39	36					2.51541e-25	3.12416e-25	1	0
OTOF	9381	broad.mit.edu	37	2	26702480	26702480	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:26702480G>T	uc002rhk.2	-	17	2081	c.1954C>A	c.(1954-1956)CGG>AGG	p.R652R	OTOF_uc002rhh.2_5'Flank|OTOF_uc002rhi.2_5'Flank|OTOF_uc002rhj.2_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	652	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCGAGGCCGCTGGGGCCGG	0.642000													22	38					2.44723e-14	2.89412e-14	1	0
GPR75	10936	broad.mit.edu	37	2	54080317	54080317	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:54080317T>C	uc002rxo.3	-	2	1848	c.1577A>G	c.(1576-1578)GAA>GGA	p.E526G	ASB3_uc002rxi.3_Intron	NM_006794	NP_006785	O95800	GPR75_HUMAN	G protein-coupled receptor 75	526	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|skin(1)	2			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GCTGTCATATTCCTGCACTAA	0.408000													29	70					0	0	0	0
AFTPH	54812	broad.mit.edu	37	2	64780007	64780007	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:64780007C>T	uc002sdc.2	+	1	1431	c.1399C>T	c.(1399-1401)CAC>TAC	p.H467Y	AFTPH_uc002scz.2_Missense_Mutation_p.H467Y|AFTPH_uc002sda.2_Missense_Mutation_p.H467Y|AFTPH_uc002sdb.2_Missense_Mutation_p.H467Y	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	467					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						GTCTTCAGAGCACTTTCCACA	0.413000													33	58					0	0	0	0
WDR54	84058	broad.mit.edu	37	2	74652827	74652827	+	Nonstop_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:74652827G>C	uc002slb.2	+	10	1064	c.1004G>C	c.(1003-1005)TGA>TCA	p.*335S		NM_032118	NP_115494	Q9H977	WDR54_HUMAN	WD repeat domain 54	335											0						AGCAGTGTGTGAGAAGAGCAG	0.507000													71	98					0	0	0	0
Unknown	0	broad.mit.edu	37	2	90249391	90249391	+	RNA	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:90249391C>T	uc010fhm.2	+	28		c.3934C>T								Parts of antibodies, mostly variable regions.																		TATTATAGTACCCCTCCCACA	0.517000													54	138					0	0	0	0
MYO7B	4648	broad.mit.edu	37	2	128384629	128384629	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:128384629T>A	uc002top.2	+	31	4270	c.4217T>A	c.(4216-4218)CTG>CAG	p.L1406Q	MYO7B_uc002toq.1_Missense_Mutation_p.L259Q|MYO7B_uc002tor.1_Missense_Mutation_p.L259Q	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1406	FERM 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CAGTGGCCGCTGCTCTTCTCC	0.637000													7	12					0	0	0	0
RAB3GAP1	22930	broad.mit.edu	37	2	135851202	135851202	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:135851202A>T	uc002tuj.2	+	5	326	c.301A>T	c.(301-303)ATG>TTG	p.M101L	RAB3GAP1_uc010fnf.2_Missense_Mutation_p.M101L|RAB3GAP1_uc010fng.2_5'UTR|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	101						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		TCCACAATCTATGCAAGATTT	0.338000													21	39					0	0	0	0
NEB	4703	broad.mit.edu	37	2	152397296	152397296	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:152397296G>T	uc010fnx.2	-	109	15790	c.15599C>A	c.(15598-15600)GCC>GAC	p.A5200D	NEB_uc002txr.2_Missense_Mutation_p.A1623D	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	5200	Nebulin 141.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCTTTGGTGGCAAGTTCAAC	0.413000													26	45					2.79863e-10	3.21193e-10	1	0
SCN3A	6328	broad.mit.edu	37	2	166003416	166003416	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:166003416G>A	uc002ucx.2	-	12	1996	c.1504C>T	c.(1504-1506)CGA>TGA	p.R502*	SCN3A_uc002ucy.2_Nonsense_Mutation_p.R502*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.R502*|SCN3A_uc002uda.1_Nonsense_Mutation_p.R371*|SCN3A_uc002udb.1_Nonsense_Mutation_p.R371*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	502						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTCTTCCTTCGGTTCCTCCAT	0.428000													51	96					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179457367	179457367	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:179457367C>A	uc010zfg.1	-	250	51885	c.51661G>T	c.(51661-51663)GAT>TAT	p.D17221Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D10916Y|TTN_uc010zfi.1_Missense_Mutation_p.D10849Y|TTN_uc010zfj.1_Missense_Mutation_p.D10724Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18148							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTTGGCATCAAGAATCAAC	0.363000													35	51					7.65355e-07	8.49701e-07	1	0
GULP1	51454	broad.mit.edu	37	2	189458684	189458684	+	Silent	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:189458684A>T	uc010fru.2	+	12	1322	c.861A>T	c.(859-861)GGA>GGT	p.G287G	GULP1_uc002uqd.2_Missense_Mutation_p.D291V|GULP1_uc010zfw.1_Silent_p.G184G|GULP1_uc002uqf.2_Silent_p.G287G|GULP1_uc002uqg.2_Silent_p.G287G|GULP1_uc002uqh.1_3'UTR	NM_016315	NP_057399	Q9UBP9	GULP1_HUMAN	GULP, engulfment adaptor PTB domain containing	287					apoptosis|lipid transport|phagocytosis, engulfment	cytoplasm|intracellular membrane-bounded organelle	signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0423)|Epithelial(96;0.158)			TCAAAATGGGACTAACTCTTG	0.338000													9	26					0	0	0	0
CPS1	1373	broad.mit.edu	37	2	211473156	211473156	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:211473156C>T	uc002vee.3	+	19	2396	c.2264C>T	c.(2263-2265)TCC>TTC	p.S755F	CPS1_uc010fur.2_Missense_Mutation_p.S761F|CPS1_uc010fus.2_Missense_Mutation_p.S304F	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	755					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AACGTCGTATCCGGGAAGACA	0.423000													27	47					0	0	0	0
MARCH4	57574	broad.mit.edu	37	2	217124378	217124378	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:217124378G>A	uc002vgb.2	-	4	2657	c.890C>T	c.(889-891)TCG>TTG	p.S297L		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	297						Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		GCGGTACACCGAGGGTCCTTC	0.537000													23	25					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238287849	238287849	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:238287849G>C	uc002vwl.2	-	6	2212	c.1927C>G	c.(1927-1929)CTT>GTT	p.L643V	COL6A3_uc002vwo.2_Missense_Mutation_p.L437V|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.L437V|COL6A3_uc002vwr.2_Missense_Mutation_p.L236V|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	643	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCATCCAAAAGAAAGATGATA	0.388000													11	24					0	0	0	0
MYEOV2	150678	broad.mit.edu	37	2	241069334	241069334	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:241069334C>T	uc002vyu.1	-	4	375	c.375G>A	c.(373-375)TCG>TCA	p.S125S		NM_138336	NP_612209	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 1	Error:Variant_position_missing_in_Q8WXC6_after_alignment											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		TTACCTCTTCCGACACCACAG	0.617000													34	65					0	0	0	0
ING5	84289	broad.mit.edu	37	2	242650884	242650884	+	Silent	SNP	C	T	T	rs142180451	byFrequency	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:242650884C>T	uc002wcd.2	+	4	394	c.369C>T	c.(367-369)TCC>TCT	p.S123S	ING5_uc002wcc.1_Silent_p.S123S	NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	123					DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		TTGAAAGCTCCGGAGGGCGAG	0.393000													44	94					0	0	0	0
PTPRA	5786	broad.mit.edu	37	20	2845938	2845938	+	Translation_Start_Site	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr20:2845938C>T	uc002whj.2	+	5	522	c.-153C>T	c.(-155--151)CACGT>CATGT		VPS16_uc002whh.2_RNA|VPS16_uc002whe.2_Missense_Mutation_p.R717C|VPS16_uc002whf.2_Missense_Mutation_p.R573C|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Missense_Mutation_p.R403C|VPS16_uc002whi.2_Missense_Mutation_p.R201C	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A						axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						GCAGCTGGCACGTGACTTCCG	0.592000													23	60					0	0	0	0
ProSAPiP1	9762	broad.mit.edu	37	20	3147717	3147717	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr20:3147717C>T	uc002wia.1	-	1	1491	c.93G>A	c.(91-93)CCG>CCA	p.P31P	ProSAPiP1_uc002wib.1_Silent_p.P31P	NM_014731	NP_055546	O60299	PRIP1_HUMAN	ProSAPiP1 protein	31						cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				pancreas(1)	1						GGCGGGGGTCCGGGGGTCCAA	0.706000													9	10					0	0	0	0
RIN2	54453	broad.mit.edu	37	20	19981537	19981537	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr20:19981537G>T	uc002wro.1	+	11	2681	c.2645G>T	c.(2644-2646)GGC>GTC	p.G882V	RIN2_uc010gcu.1_Missense_Mutation_p.G449V|RIN2_uc010gcv.1_Missense_Mutation_p.G676V	NM_018993	NP_061866	Q8WYP3	RIN2_HUMAN	Ras and Rab interactor 2	882					endocytosis|small GTPase mediated signal transduction	cytoplasm	GTPase activator activity|Rab guanyl-nucleotide exchange factor activity			lung(4)|ovary(1)	5						GATCCTTATGGCATCATTTTC	0.532000													22	63					5.45024e-15	6.47365e-15	1	0
CST3	1471	broad.mit.edu	37	20	23614554	23614554	+	Nonstop_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr20:23614554T>A	uc002wtm.2	-	3	515	c.440A>T	c.(439-441)TAG>TTG	p.*147L	CST3_uc002wtn.1_Nonstop_Mutation_p.*147L	NM_000099	NP_000090	P01034	CYTC_HUMAN	cystatin C precursor	147					defense response|fibril organization|negative regulation of blood vessel remodeling|negative regulation of collagen catabolic process|negative regulation of elastin catabolic process|negative regulation of extracellular matrix disassembly	extracellular space	beta-amyloid binding|cysteine-type endopeptidase inhibitor activity|protease binding			ovary(1)	1	Lung NSC(19;0.0789)|Colorectal(13;0.0993)|all_lung(19;0.169)					TACAGACCCCTAGGCGTCCTG	0.577000													31	97					0	0	0	0
BAGE2	85319	broad.mit.edu	37	21	11058238	11058238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr21:11058238G>A	uc002yit.1	-	3	410	c.202C>T	c.(202-204)CAG>TAG	p.Q68*	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTCGGCTCCTGCAGCACAAGG	0.433000													14	83					0	0	0	0
NRIP1	8204	broad.mit.edu	37	21	16339770	16339770	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr21:16339770T>A	uc002yjx.2	-	4	1342	c.744A>T	c.(742-744)GAA>GAT	p.E248D		NM_003489	NP_003480	P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	248	Repression domain 1.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity				0				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		TAGCCCTTTTTTCCACCATGC	0.473000													19	47					0	0	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45479008	45479008	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr21:45479008A>T	uc002zea.2	+	6	872	c.703A>T	c.(703-705)ATG>TTG	p.M235L	TRAPPC10_uc010gpo.2_5'UTR|TRAPPC10_uc002zdz.2_Missense_Mutation_p.M235L	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	235					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TGTTTTCGAGATGCTGCAGCA	0.468000													9	28					0	0	0	0
SYN3	8224	broad.mit.edu	37	22	32909744	32909744	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr22:32909744C>G	uc003amx.2	-	13	1837	c.1678G>C	c.(1678-1680)GAC>CAC	p.D560H	SYN3_uc003amy.2_3'UTR|SYN3_uc003amz.2_Missense_Mutation_p.D559H	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa	560	E.				neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						TTGGCCTCGTCTTCACTTGGG	0.562000													28	55					0	0	0	0
GRAP2	9402	broad.mit.edu	37	22	40364132	40364132	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr22:40364132G>T	uc003ayh.1	+	6	809	c.546G>T	c.(544-546)ATG>ATT	p.M182I	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Missense_Mutation_p.M156I|GRAP2_uc011aon.1_Missense_Mutation_p.M116I|GRAP2_uc010gya.1_Missense_Mutation_p.M182I|GRAP2_uc011aoo.1_Missense_Mutation_p.M110I|GRAP2_uc011aop.1_Missense_Mutation_p.M142I|GRAP2_uc011aoq.1_Missense_Mutation_p.M69I|GRAP2_uc003ayj.1_Missense_Mutation_p.M182I	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	182					cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GACCTTCGATGAACCGGAAGC	0.443000													8	10					0.00448238	0.00472561	1	0
PHF21B	112885	broad.mit.edu	37	22	45281799	45281799	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr22:45281799C>T	uc003bfn.2	-	11	1368	c.1217G>A	c.(1216-1218)GGT>GAT	p.G406D	PHF21B_uc003bfm.2_Missense_Mutation_p.G202D|PHF21B_uc011aqk.1_Missense_Mutation_p.G352D|PHF21B_uc011aql.1_Missense_Mutation_p.G364D	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	406							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		CCAGGGCACACCCTCGTCTTT	0.597000													57	84					0	0	0	0
CELSR1	9620	broad.mit.edu	37	22	46931727	46931727	+	Silent	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr22:46931727G>T	uc003bhw.1	-	1	1341	c.1341C>A	c.(1339-1341)ATC>ATA	p.I447I		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	447	Extracellular (Potential).|Cadherin 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CCTCCACCTCGATGTACACGG	0.667000													16	35					1.52009e-12	1.75942e-12	1	0
PLCL2	23228	broad.mit.edu	37	3	17052859	17052859	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:17052859G>A	uc011awc.1	+	5	2102	c.1997G>A	c.(1996-1998)AGG>AAG	p.R666K	PLCL2_uc011awd.1_Missense_Mutation_p.R548K	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	674	PI-PLC Y-box.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						TTTCTTGCTAGGGTTTTTCCC	0.398000													16	23					0	0	0	0
FAM86D	692099	broad.mit.edu	37	3	75477008	75477008	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:75477008C>T	uc003dpp.3	-	5	498	c.139G>A	c.(139-141)GGT>AGT	p.G47S	FAM86D_uc003dpo.3_Intron|FAM86D_uc003dps.3_Intron|FAM86D_uc003dpq.3_5'UTR|FAM86D_uc003dpr.3_Intron	NR_024241				RecName: Full=Protein FAM86B1;												0						CCTGTGGTACCATGGGAGATG	0.582000													20	10					0	0	0	0
EPHA3	2042	broad.mit.edu	37	3	89456492	89456492	+	Silent	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:89456492C>G	uc003dqy.2	+	8	1893	c.1668C>G	c.(1666-1668)CTC>CTG	p.L556L	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	556	Helical; (Potential).					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TTATTCTCCTCACTGTTGTCA	0.408000										TSP Lung(6;0.00050)			10	13					0	0	0	0
Unknown	0	broad.mit.edu	37	3	95374086	95374086	+	RNA	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:95374086C>T	uc003dro.1	-	5		c.1776G>A								Homo sapiens cDNA FLJ34909 fis, clone NT2RI2009301, moderately similar to BIFUNCTIONAL METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE, MITOCHONDRIAL PRECURSOR.																		CTATTGTGAACAGGTTTAGAA	0.393000													4	22					0	0	0	0
EPHA6	285220	broad.mit.edu	37	3	97439174	97439174	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:97439174G>C	uc010how.1	+	15	2897	c.2854G>C	c.(2854-2856)GAT>CAT	p.D952H	EPHA6_uc003drt.2_Missense_Mutation_p.D344H|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	857	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CTCAGCAAGCGATGCATGGAG	0.463000													45	60					0	0	0	0
KALRN	8997	broad.mit.edu	37	3	124369736	124369736	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:124369736C>T	uc003ehg.2	+	38	5870	c.5743C>T	c.(5743-5745)CCT>TCT	p.P1915S	KALRN_uc003ehi.2_Missense_Mutation_p.P256S|KALRN_uc003ehk.2_Missense_Mutation_p.P218S|KALRN_uc011bjz.1_Missense_Mutation_p.P7S|KALRN_uc003ehj.2_Missense_Mutation_p.P186S	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1914					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ACCCACACCTCCTAAAAACCC	0.542000													23	55					0	0	0	0
STAG1	10274	broad.mit.edu	37	3	136141433	136141433	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:136141433T>C	uc003era.1	-	19	2148	c.1856A>G	c.(1855-1857)CAG>CGG	p.Q619R	STAG1_uc003erb.1_Missense_Mutation_p.Q619R|STAG1_uc003erc.1_Missense_Mutation_p.Q393R|STAG1_uc010hua.1_Missense_Mutation_p.Q482R	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	619					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						AAACTTAATCTGTTTTAATAA	0.308000													21	52					0	0	0	0
CLSTN2	64084	broad.mit.edu	37	3	140281753	140281753	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:140281753C>A	uc003etn.2	+	14	2503	c.2313C>A	c.(2311-2313)TGC>TGA	p.C771*		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	771	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GGATTAAGTGCTCAGAACTCA	0.562000										HNSCC(16;0.037)			10	38					0.000673444	0.00071275	1	0
PIK3CA	5290	broad.mit.edu	37	3	178916946	178916946	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:178916946G>C	uc003fjk.2	+	2	490	c.333G>C	c.(331-333)AAG>AAC	p.K111N		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	111					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.K111N(10)|p.K111E(7)|p.K111R(1)|p.K111del(1)|p.K111_I112>N(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			GTGAAGAAAAGATCCTCAATC	0.328000		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			6	42					0	0	0	0
MCF2L2	23101	broad.mit.edu	37	3	182897459	182897459	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:182897459C>T	uc003fli.1	-	29	3217	c.3127G>A	c.(3127-3129)GAC>AAC	p.D1043N		NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	1043					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			TGACTGTCGTCCGACTGGAAA	0.587000													85	82					0	0	0	0
RFC4	5984	broad.mit.edu	37	3	186518927	186518927	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:186518927T>G	uc003fqz.2	-	3	412	c.189A>C	c.(187-189)AAA>AAC	p.K63N	RFC4_uc011bsc.1_Missense_Mutation_p.K63N|RFC4_uc011bsd.1_Missense_Mutation_p.K63N	NM_002916	NP_002907	P35249	RFC4_HUMAN	replication factor C 4	63					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|phosphatidylinositol-mediated signaling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|large_intestine(1)	5	all_cancers(143;2.92e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)	GBM - Glioblastoma multiforme(93;0.0739)		CTAAAGATTTTTTCAGCACTG	0.378000													24	106					0	0	0	0
MFI2	4241	broad.mit.edu	37	3	196735690	196735690	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:196735690C>T	uc003fxk.3	-	12	1785	c.1672G>A	c.(1672-1674)GGC>AGC	p.G558S		NM_005929	NP_005920	P08582	TRFM_HUMAN	melanoma-associated antigen p97 isoform 1	558	Transferrin-like 2.				cellular iron ion homeostasis|iron ion transport	anchored to membrane|extracellular region|integral to plasma membrane	ferric iron binding|protein binding				0	all_cancers(143;3.95e-09)|Ovarian(172;0.0634)|Breast(254;0.0838)		Epithelial(36;4.55e-24)|all cancers(36;2.87e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00536)		CTGAAGGCGCCGCGGTAGCCG	0.672000													26	60					0	0	0	0
DRD5	1816	broad.mit.edu	37	4	9784899	9784899	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:9784899A>C	uc003gmb.3	+	1	1642	c.1246A>C	c.(1246-1248)AAC>CAC	p.N416H		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	416	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	CATGATGCCCAACGCCGTTAC	0.567000													19	48					0	0	0	0
BOD1L	259282	broad.mit.edu	37	4	13610154	13610154	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:13610154C>T	uc003gmz.1	-	8	1859	c.1742G>A	c.(1741-1743)AGG>AAG	p.R581K	BOD1L_uc010idr.1_5'UTR	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	581	Lys-rich.						DNA binding			ovary(5)|breast(1)	6						AAATATGTACCTTGAATCTTT	0.363000													3	4					0	0	0	0
LCORL	254251	broad.mit.edu	37	4	17910776	17910776	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:17910776T>A	uc003gpq.2	-	5	634	c.623A>T	c.(622-624)GAG>GTG	p.E208V	LCORL_uc011bxk.1_Missense_Mutation_p.E121V	NM_153686	NP_710153	Q8N3X6	LCORL_HUMAN	ligand dependent nuclear receptor	208					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						GCCTTCCTGCTCTTCCTGAAG	0.348000													28	42					0	0	0	0
SLIT2	9353	broad.mit.edu	37	4	20619185	20619185	+	Missense_Mutation	SNP	G	T	T	rs111791287		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:20619185G>T	uc003gpr.1	+	36	4464	c.4260G>T	c.(4258-4260)AAG>AAT	p.K1420N	SLIT2_uc003gps.1_Missense_Mutation_p.K1412N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1420					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AGGCGATCAAGTGCAAGCATG	0.557000													13	15					5.50884e-06	5.96974e-06	1	0
RCHY1	25898	broad.mit.edu	37	4	76407873	76407873	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:76407873G>C	uc003hik.2	-	9	793	c.661C>G	c.(661-663)CTC>GTC	p.L221V	RCHY1_uc010iio.2_Missense_Mutation_p.L117V|RCHY1_uc003hij.2_3'UTR|RCHY1_uc003hil.2_Missense_Mutation_p.L212V|RCHY1_uc010iip.2_3'UTR|RCHY1_uc010iiq.2_RNA|RCHY1_uc010iir.2_Missense_Mutation_p.L181V	NM_015436	NP_056251	Q96PM5	ZN363_HUMAN	ring finger and CHY zinc finger domain	221					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein autoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nuclear speck|ubiquitin ligase complex	electron carrier activity|p53 binding|protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			pancreas(1)	1			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			TCATTGCAGAGAATCTGAAAA	0.318000													7	17					0	0	0	0
ENPEP	2028	broad.mit.edu	37	4	111398004	111398004	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:111398004C>A	uc003iab.3	+	1	776	c.434C>A	c.(433-435)CCG>CAG	p.P145Q		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	145	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	ACCCGGCTCCCGGAGCTGAAG	0.627000													51	108					2.52991e-16	3.05838e-16	1	0
SEC24D	9871	broad.mit.edu	37	4	119649746	119649746	+	Silent	SNP	A	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:119649746A>T	uc003ici.3	-	22	3200	c.2928T>A	c.(2926-2928)ATT>ATA	p.I976I	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Silent_p.I977I	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	976					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TTTGTTGGATAATACCCATTA	0.308000													7	25					0	0	0	0
DCLK2	166614	broad.mit.edu	37	4	151168815	151168815	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:151168815G>A	uc003ilm.3	+	13	1939	c.1839G>A	c.(1837-1839)CCG>CCA	p.P613P	DCLK2_uc003iln.3_Silent_p.P612P|DCLK2_uc003ilo.3_Silent_p.P630P|DCLK2_uc003ilp.3_RNA	NM_001040260	NP_001035350	Q8N568	DCLK2_HUMAN	doublecortin-like kinase 2 isoform a	613	Protein kinase.				intracellular signal transduction	cytoplasm|cytoskeleton	ATP binding|protein serine/threonine kinase activity			ovary(3)	3	all_hematologic(180;0.151)					TGGAGTTTCCGGCCCCCTACT	0.512000													12	25					0	0	0	0
WDR17	116966	broad.mit.edu	37	4	177077229	177077229	+	Splice_Site	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:177077229G>T	uc003iuj.2	+	19	2689	c.2533_splice	c.e19-1	p.W845_splice	WDR17_uc003iuk.2_Splice_Site_p.W821_splice|WDR17_uc003ium.3_Splice_Site_p.W821_splice|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Splice_Site_p.W64_splice	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1											ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		TTCTATTGTAGTGGGACAAAG	0.368000													24	69					2.27525e-19	2.81304e-19	1	0
FAT1	2195	broad.mit.edu	37	4	187538253	187538253	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr4:187538253A>C	uc003izf.2	-	11	9169	c.8981T>G	c.(8980-8982)CTT>CGT	p.L2994R		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2994	Extracellular (Potential).|Cadherin 27.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CGTGATAGTAAGAAGGTAATT	0.413000										HNSCC(5;0.00058)			13	23					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13928288	13928288	+	Splice_Site	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:13928288C>A	uc003jfd.2	-	3	235	c.193_splice	c.e3-1	p.I65_splice	DNAH5_uc003jfe.1_Splice_Site	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5						microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCTTTCAATCTGGGAAAAAG	0.318000									Kartagener_syndrome				23	72					3.5997e-14	4.23861e-14	1	0
NIPBL	25836	broad.mit.edu	37	5	37048756	37048756	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:37048756A>G	uc003jkl.3	+	39	7241	c.6742A>G	c.(6742-6744)ATG>GTG	p.M2248V	NIPBL_uc003jkk.3_Missense_Mutation_p.M2248V|NIPBL_uc003jkn.2_5'Flank	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2248	HEAT 4.				brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AGATACACGTATGCAGCAGGC	0.269000													9	24					0	0	0	0
LIFR	3977	broad.mit.edu	37	5	38482196	38482196	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:38482196C>T	uc010ive.1	-	20	3127	c.2795G>A	c.(2794-2796)CGT>CAT	p.R932H	LIFR_uc003jli.2_Missense_Mutation_p.R932H	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	932	Cytoplasmic (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					ATCTTCAGGACGCTCAGCTAC	0.433000			T	PLAG1	salivary adenoma								29	188					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90106737	90106737	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:90106737C>T	uc003kju.2	+	74	15756	c.15660C>T	c.(15658-15660)TTC>TTT	p.F5220F	GPR98_uc003kjt.2_Silent_p.F2926F|GPR98_uc003kjw.2_Silent_p.F881F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5220	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATGGAACATTCAGCCTTGGGC	0.463000													28	32					0	0	0	0
NR2F1	7025	broad.mit.edu	37	5	92923999	92923999	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:92923999C>T	uc003kkj.2	+	2	2527	c.840C>T	c.(838-840)GCC>GCT	p.A280A		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	280					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		TGGCCGCCGCCGGCCTGCATG	0.667000													25	23					0	0	0	0
SLC27A6	28965	broad.mit.edu	37	5	128302163	128302163	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:128302163G>A	uc003kuy.2	+	2	729	c.333G>A	c.(331-333)CTG>CTA	p.L111L	SLC27A6_uc003kuz.2_Silent_p.L111L	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	111					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TGGCTCTGCTGATGAGCAATG	0.552000													13	10					0	0	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140769259	140769259	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:140769259C>T	uc003lkc.1	+	1	1808	c.1808C>T	c.(1807-1809)TCC>TTC	p.S603F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.S603F	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	603	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTGGCTGTCCTACCACGTG	0.662000													28	21					0	0	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140857945	140857945	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:140857945G>A	uc003lkv.1	+	1	2377	c.2262G>A	c.(2260-2262)CCG>CCA	p.P754P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Silent_p.P754P|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	754	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATGTCGCCGCACCTTTACC	0.642000											OREG0016865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	51	37					0	0	0	0
PDGFRB	5159	broad.mit.edu	37	5	149503837	149503837	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:149503837G>T	uc003lro.2	-	14	2468	c.1999C>A	c.(1999-2001)CTG>ATG	p.L667M	PDGFRB_uc010jhd.2_Missense_Mutation_p.L506M	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	667	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GCCCCCAACAGGTTGACCACG	0.632000			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								19	22					4.35082e-09	4.89017e-09	1	0
CDX1	1044	broad.mit.edu	37	5	149562339	149562339	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:149562339C>A	uc003lrq.2	+	2	550	c.454C>A	c.(454-456)CGG>AGG	p.R152R		NM_001804	NP_001795	P47902	CDX1_HUMAN	caudal type homeobox 1	152						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGTAAGACTCGGACCAAGGA	0.557000													97	73					9.72315e-31	1.21875e-30	1	0
RNF44	22838	broad.mit.edu	37	5	175956543	175956543	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:175956543G>A	uc003mek.1	-	9	1642	c.1117C>T	c.(1117-1119)CAT>TAT	p.H373Y	RNF44_uc011dfo.1_Missense_Mutation_p.H281Y|RNF44_uc003mel.1_Missense_Mutation_p.H62Y	NM_014901	NP_055716	Q7L0R7	RNF44_HUMAN	ring finger protein 44	373							zinc ion binding				0	all_cancers(89;0.0029)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCCGACTGATGGCTGTCCGGG	0.647000													22	25					0	0	0	0
NSD1	64324	broad.mit.edu	37	5	176709523	176709523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:176709523C>T	uc003mfr.3	+	19	6088	c.5950C>T	c.(5950-5952)CGA>TGA	p.R1984*	NSD1_uc003mft.3_Nonsense_Mutation_p.R1715*|NSD1_uc011dfx.1_Nonsense_Mutation_p.R1632*	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1984	SET.		R -> Q (in SOTOSS; loss of enzyme activity).		negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		ATGCAGAGCTCGAATTCGCTA	0.373000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			38	28					0	0	0	0
GNB2L1	10399	broad.mit.edu	37	5	180666087	180666087	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr5:180666087G>A	uc003mni.1	-	5	722	c.616C>T	c.(616-618)CTC>TTC	p.L206F	GNB2L1_uc003mnh.1_Missense_Mutation_p.L165F|GNB2L1_uc003mnk.1_Missense_Mutation_p.L128F|GNB2L1_uc003mnj.1_Missense_Mutation_p.L160F|GNB2L1_uc003mnl.1_5'UTR|GNB2L1_uc011dhk.1_Missense_Mutation_p.L206F|GNB2L1_uc010jls.2_3'UTR	NM_006098	NP_006089	P63244	GBLP_HUMAN	guanine nucleotide binding protein (G protein),	206	WD 5.				apoptosis|cell cycle|gastrulation|interspecies interaction between organisms|negative regulation of cell growth|negative regulation of phagocytosis|negative regulation of translation|negative regulation of Wnt receptor signaling pathway|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of gastrulation|positive regulation of GTPase activity|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein homooligomerization|positive regulation of protein phosphorylation|regulation of cell cycle|regulation of cell division|regulation of establishment of cell polarity|regulation of protein localization|rhythmic process	cytoskeleton|dendrite|midbody|nucleus|perikaryon|perinuclear region of cytoplasm|phagocytic cup|small ribosomal subunit	ion channel inhibitor activity|protein kinase C binding|protein phosphatase binding|protein tyrosine kinase inhibitor activity|receptor tyrosine kinase binding|SH2 domain binding				0	all_cancers(89;8.79e-06)|all_epithelial(37;1.13e-06)|Renal(175;0.000159)|Lung NSC(126;0.00354)|all_lung(126;0.00609)|Breast(19;0.0654)	all_cancers(40;0.000209)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_lung(500;0.0221)|all_hematologic(541;0.0433)|Lung NSC(249;0.132)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.101)|all cancers(165;0.11)		GAAGCACAGAGGGATCCATCT	0.522000													47	45					0	0	0	0
HIST1H3H	8357	broad.mit.edu	37	6	27778004	27778004	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:27778004G>A	uc003njm.2	+	1	163	c.153G>A	c.(151-153)GAG>GAA	p.E51E	HIST1H2BL_uc003njl.2_5'Flank	NM_003536	NP_003527	P68431	H31_HUMAN	histone cluster 1, H3h	51					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						CTCTCCGCGAGATTCGCCGCT	0.627000													29	53					0	0	0	0
ABCF1	23	broad.mit.edu	37	6	30546284	30546284	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:30546284G>C	uc003nql.2	+	6	514	c.419G>C	c.(418-420)AGT>ACT	p.S140T	ABCF1_uc003nqk.2_Missense_Mutation_p.S141T|ABCF1_uc003nqm.2_Missense_Mutation_p.S140T|ABCF1_uc010jsb.2_Intron	NM_001025091	NP_001020262	Q8NE71	ABCF1_HUMAN	ATP-binding cassette, sub-family F, member 1	140				S->A: Reduces phosphorylation. Inhibits strongly phosphorylation by CK2; when associated with S-109. Does not inhibits interaction with EIF2; when associated with S-109. Does not inhibit association with ribosomes; when associated with S- 109. Reduces EIF2 interaction with ribosomes; when associated with S-109. Does not inhibit protein synthesis; when associated with A-109.	inflammatory response|translational initiation	nuclear envelope|nuclear envelope|nucleoplasm|nucleoplasm|polysomal ribosome	ATP binding|ATP binding|ATPase activity|protein binding|ribosome binding|translation activator activity|translation factor activity, nucleic acid binding			ovary(2)	2						CAGGATCAGAGTGAGGAAGAG	0.502000													19	5					0	0	0	0
BRD2	6046	broad.mit.edu	37	6	32947816	32947816	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:32947816G>T	uc003ocn.3	+	11	3754	c.2053G>T	c.(2053-2055)GAG>TAG	p.E685*	BRD2_uc003ocq.3_Nonsense_Mutation_p.E685*|BRD2_uc003ocp.3_Nonsense_Mutation_p.E565*|BRD2_uc010juh.2_Nonsense_Mutation_p.E720*	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	685	ET.				spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						AGAAGAGATTGAGATTGATTT	0.483000													4	60					1.23904e-05	1.33738e-05	1	0
DNAH8	1769	broad.mit.edu	37	6	38885712	38885712	+	Silent	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:38885712A>G	uc003ooe.1	+	68	10269	c.9669A>G	c.(9667-9669)GCA>GCG	p.A3223A	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGATGAGTGCAACAGGATTCC	0.333000													3	43					0	0	0	0
DEFB114	245928	broad.mit.edu	37	6	49928037	49928037	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:49928037C>T	uc011dwp.1	-	2	178	c.178G>A	c.(178-180)GAG>AAG	p.E60K		NM_001037499	NP_001032588	Q30KQ6	DB114_HUMAN	beta-defensin 114 precursor	60					defense response to bacterium	extracellular region				ovary(1)	1	Lung NSC(77;0.042)					TACAATTTCTCAGTGCAGCAA	0.378000													12	24					0	0	0	0
EYS	346007	broad.mit.edu	37	6	66205124	66205124	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:66205124C>A	uc011dxu.1	-	4	718	c.180G>T	c.(178-180)TTG>TTT	p.L60F	EYS_uc003peq.2_Missense_Mutation_p.L60F|EYS_uc003per.1_Missense_Mutation_p.L60F|EYS_uc010kaj.1_RNA	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	60					response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						TGTTTACACCCAAAAACCAGC	0.388000													15	75					1.3612e-06	1.50507e-06	1	0
SYNCRIP	10492	broad.mit.edu	37	6	86324795	86324795	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:86324795G>A	uc003pla.2	-	11	2092	c.1551C>T	c.(1549-1551)CCC>CCT	p.P517P	SYNCRIP_uc003pku.2_Silent_p.P517P|SYNCRIP_uc003pkw.2_Silent_p.P482P|SYNCRIP_uc003pky.2_Silent_p.P419P|SYNCRIP_uc003pkv.2_Silent_p.P517P|SYNCRIP_uc003pkx.2_Silent_p.P365P|SYNCRIP_uc003pkz.2_Silent_p.P482P	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	517	Interaction with APOBEC1.|8 X 3 AA repeats of R-G-G.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		CTCTACCGCGGGGAGGAGCAG	0.577000													85	45					0	0	0	0
RFX6	222546	broad.mit.edu	37	6	117198535	117198535	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:117198535C>T	uc003pxm.2	+	1	160	c.97C>T	c.(97-99)CTG>TTG	p.L33L		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	33					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TGTGCAGCTCCTGGGCAAGGG	0.667000													15	6					0	0	0	0
FAM184A	79632	broad.mit.edu	37	6	119345399	119345399	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:119345399C>G	uc003pyj.2	-	2	1087	c.739G>C	c.(739-741)GAT>CAT	p.D247H	FAM184A_uc003pyk.3_Missense_Mutation_p.D127H|FAM184A_uc003pyl.3_Missense_Mutation_p.D127H	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	247	Potential.									ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						CCTTCATAATCCTCAATTAGT	0.423000													16	39					0	0	0	0
ULBP2	80328	broad.mit.edu	37	6	150263229	150263229	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:150263229C>A	uc003qno.2	+	1	94	c.21C>A	c.(19-21)ACC>ACA	p.T7T	ULBP2_uc011eeh.1_Silent_p.T7T|ULBP2_uc010kij.2_Silent_p.T7T	NM_025217	NP_079493	Q9BZM5	N2DL2_HUMAN	UL16 binding protein 2 precursor	7					antigen processing and presentation|immune response|natural killer cell activation|regulation of immune response	anchored to membrane|cell surface|extracellular space|MHC class I protein complex	MHC class I receptor activity				0		Ovarian(120;0.0907)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.58e-12)		CCGCCGCTACCAAGATCCTTC	0.607000													18	7					1.33834e-09	1.51678e-09	1	0
PDE10A	10846	broad.mit.edu	37	6	165862443	165862443	+	Silent	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:165862443T>A	uc003qun.2	-	6	580	c.339A>T	c.(337-339)GCA>GCT	p.A113A	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Silent_p.A43A|PDE10A_uc003quo.2_Silent_p.A123A	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	113	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	GGAAATACAGTGCAAATCCAT	0.368000													23	38					0	0	0	0
ZFAND2A	90637	broad.mit.edu	37	7	1197827	1197827	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr7:1197827T>G	uc003skc.2	-	2	323	c.22A>C	c.(22-24)AAG>CAG	p.K8Q	ZFAND2A_uc003skd.3_Missense_Mutation_p.K8Q|uc003skf.1_5'Flank	NM_182491	NP_872297	Q8N6M9	ZFN2A_HUMAN	zinc finger, AN1-type domain 2A	8	AN1-type 1.					cytoplasm|nucleus	zinc ion binding			ovary(1)	1		Ovarian(82;0.11)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.82e-15)		GAACAATGCTTCCCCAAATCA	0.408000													48	230					0	0	0	0
Unknown	0	broad.mit.edu	37	7	38374952	38374952	+	Splice_Site	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr7:38374952C>T	uc010kxk.1	-	2		c.166_splice	c.e2-1							Homo sapiens cDNA FLJ77147 complete cds, highly similar to Homo sapiens T cell receptor gamma variable 7, mRNA.																		TTCTGACTGGCTGCAATGGGA	0.403000											OREG0017990	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	23					0	0	0	0
Unknown	0	broad.mit.edu	37	7	39894089	39894089	+	RNA	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr7:39894089A>G	uc003thg.2	-	1		c.771T>C								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		TCAAATTCCAAGTGCTACTCA	0.368000													24	55					0	0	0	0
PKD1L1	168507	broad.mit.edu	37	7	47898336	47898336	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr7:47898336C>G	uc003tny.1	-	27	4297	c.4297G>C	c.(4297-4299)GAA>CAA	p.E1433Q		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1433	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TTCGAGTTTTCTTGCTCAGAG	0.438000													16	57					0	0	0	0
ASB4	51666	broad.mit.edu	37	7	95157465	95157465	+	Silent	SNP	C	A	A	rs146416403	by1000genomes	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr7:95157465C>A	uc011kij.1	+	3	828	c.828C>A	c.(826-828)GCC>GCA	p.A276A	ASB4_uc003unx.2_Silent_p.A276A	NM_016116	NP_057200	Q9Y574	ASB4_HUMAN	ankyrin repeat and SOCS box-containing protein 4	276	ANK 6.				intracellular signal transduction					central_nervous_system(1)	1	all_cancers(62;2.27e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.218)|all_lung(186;0.246)		STAD - Stomach adenocarcinoma(171;0.0151)			AAGCTGGCGCCGAAGCCAATC	0.577000											OREG0018172	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	35					8.10497e-08	9.03505e-08	1	0
CHRM2	1129	broad.mit.edu	37	7	136700385	136700385	+	Missense_Mutation	SNP	A	G	G	rs142006633	byFrequency	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr7:136700385A>G	uc003vtf.1	+	4	1396	c.773A>G	c.(772-774)AAC>AGC	p.N258S	CHRM2_uc003vtg.1_Missense_Mutation_p.N258S|CHRM2_uc003vtj.1_Missense_Mutation_p.N258S|CHRM2_uc003vtk.1_Missense_Mutation_p.N258S|CHRM2_uc003vtl.1_Missense_Mutation_p.N258S|CHRM2_uc003vtm.1_Missense_Mutation_p.N258S|CHRM2_uc003vti.1_Missense_Mutation_p.N258S|CHRM2_uc003vto.1_Missense_Mutation_p.N258S|CHRM2_uc003vtn.1_Missense_Mutation_p.N258S|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	258	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CTGGAGCACAACAAAATCCAG	0.512000													10	19					0	0	0	0
MGAM	8972	broad.mit.edu	37	7	141730195	141730195	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr7:141730195G>A	uc003vwy.2	+	11	1309	c.1255G>A	c.(1255-1257)GAG>AAG	p.E419K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	419	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTATATGGATGAGAGAAGGGA	0.348000													7	13					0	0	0	0
PTPRN2	5799	broad.mit.edu	37	7	157959789	157959789	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr7:157959789G>A	uc003wno.2	-	6	865	c.744C>T	c.(742-744)GCC>GCT	p.A248A	PTPRN2_uc003wnp.2_Silent_p.A231A|PTPRN2_uc003wnq.2_Silent_p.A248A|PTPRN2_uc003wnr.2_Silent_p.A210A|PTPRN2_uc011kwa.1_Silent_p.A271A	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	248	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGGCAGCATAGGCACTGAGGG	0.662000													13	12					0	0	0	0
EFHA2	286097	broad.mit.edu	37	8	16884802	16884802	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:16884802G>T	uc003wxd.2	+	1	56	c.14G>T	c.(13-15)CGA>CTA	p.R5L		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	5						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		GCTGCGCTGCGAAGGCTCTTG	0.622000													8	15					1.58986e-06	1.75078e-06	1	0
DUSP26	78986	broad.mit.edu	37	8	33451188	33451188	+	Missense_Mutation	SNP	C	T	T	rs141858173		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:33451188C>T	uc003xjp.2	-	3	632	c.299G>A	c.(298-300)CGA>CAA	p.R100Q	DUSP26_uc003xjq.2_Missense_Mutation_p.R100Q	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	100	Tyrosine-protein phosphatase.					Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		GGGCGTGCCTCGCCACCGGCT	0.632000													10	34					0	0	0	0
PRDM14	63978	broad.mit.edu	37	8	70978695	70978695	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:70978695C>T	uc003xym.2	-	5	1160	c.958G>A	c.(958-960)GGT>AGT	p.G320S		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	320	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			TTCCCCGTACCTCCTTTTCCA	0.408000													36	50					0	0	0	0
TMEM67	91147	broad.mit.edu	37	8	94821068	94821068	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:94821068G>A	uc011lgk.1	+	24	2511	c.2440G>A	c.(2440-2442)GAA>AAA	p.E814K	TMEM67_uc010maw.2_Missense_Mutation_p.E520K|TMEM67_uc003yga.3_Missense_Mutation_p.E733K|TMEM67_uc011lgl.1_Missense_Mutation_p.E213K	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	814					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			AACTTTTCAGGAAAATTTGTG	0.308000													4	18					0	0	0	0
TSPYL5	85453	broad.mit.edu	37	8	98289495	98289495	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:98289495G>A	uc003yhy.2	-	1	682	c.578C>T	c.(577-579)TCG>TTG	p.S193L		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	193					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					TGGGGGCCCCGACCCTGCATC	0.622000													24	96					0	0	0	0
RRM2B	50484	broad.mit.edu	37	8	103236307	103236307	+	Silent	SNP	A	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:103236307A>G	uc003ykn.2	-	5	761	c.517T>C	c.(517-519)TTG>CTG	p.L173L	RRM2B_uc003yko.2_RNA|RRM2B_uc010mbv.1_Silent_p.L121L|RRM2B_uc010mbw.1_Intron|RRM2B_uc010mbx.1_Intron|RRM2B_uc010mby.1_Intron	NM_015713	NP_056528	Q7LG56	RIR2B_HUMAN	ribonucleotide reductase M2 B (TP53 inducible)	173					deoxyribonucleoside diphosphate metabolic process|DNA repair|nucleobase, nucleoside and nucleotide interconversion	nucleoplasm	ribonucleoside-diphosphate reductase activity|transition metal ion binding			ovary(2)	2	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000728)			ATCCATCGCAAGGCCCAATCT	0.333000								Direct_reversal_of_damage|Modulation_of_nucleotide_pools					66	82					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110461669	110461669	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:110461669T>A	uc003yne.2	+	40	6232	c.6128T>A	c.(6127-6129)CTT>CAT	p.L2043H		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2043	Extracellular (Potential).|IPT/TIG 13.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ATTGACAGGCTTAGATCTGAT	0.353000										HNSCC(38;0.096)			5	5					0	0	0	0
COL14A1	7373	broad.mit.edu	37	8	121256222	121256222	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:121256222C>T	uc003yox.2	+	20	2719	c.2454C>T	c.(2452-2454)GTC>GTT	p.V818V	COL14A1_uc003yoy.2_Silent_p.V496V	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	818	Fibronectin type-III 6.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GCGAAGGCGTCAGCGTCTCCG	0.498000													15	153					0	0	0	0
DOCK8	81704	broad.mit.edu	37	9	289552	289552	+	Silent	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:289552C>T	uc003zgf.2	+	4	487	c.375C>T	c.(373-375)TAC>TAT	p.Y125Y	DOCK8_uc011lls.1_Silent_p.Y125Y|DOCK8_uc010mgu.2_5'UTR|DOCK8_uc010mgv.2_Silent_p.Y57Y|DOCK8_uc010mgt.2_Silent_p.Y57Y|DOCK8_uc003zgg.2_Silent_p.Y57Y|DOCK8_uc003zgh.2_RNA	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	125					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		TTCAGACCTACATCCGTGAGT	0.328000													9	47					0	0	0	0
SYK	6850	broad.mit.edu	37	9	93650843	93650843	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:93650843G>A	uc004aqz.2	+	13	1974	c.1769G>A	c.(1768-1770)CGG>CAG	p.R590Q	SYK_uc004ara.2_Missense_Mutation_p.R567Q|SYK_uc004arb.2_Missense_Mutation_p.R567Q|SYK_uc004arc.2_Missense_Mutation_p.R590Q|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	590	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						AAAGGAGAGCGGATGGGGTGC	0.438000			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								6	16					0	0	0	0
NCBP1	4686	broad.mit.edu	37	9	100403139	100403139	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:100403139C>G	uc004axq.2	+	2	557	c.98C>G	c.(97-99)TCT>TGT	p.S33C		NM_002486	NP_002477	Q09161	NCBP1_HUMAN	nuclear cap binding protein subunit 1, 80kDa	33	MIF4G.				gene silencing by RNA|histone mRNA metabolic process|mRNA 3'-end processing|mRNA capping|mRNA cleavage|mRNA export from nucleus|ncRNA metabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of mRNA 3'-end processing|positive regulation of viral transcription|regulation of translational initiation|spliceosomal snRNP assembly|termination of RNA polymerase II transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytosol|mRNA cap binding complex|nucleoplasm|ribonucleoprotein complex	protein binding|RNA cap binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.158)				CATTTGGAATCTTTAATATGT	0.358000													28	51					0	0	0	0
OR1J2	26740	broad.mit.edu	37	9	125273891	125273891	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:125273891G>A	uc004bmj.1	+	4	1666	c.811G>A	c.(811-813)GAT>AAT	p.D271N	OR1J2_uc011lyv.1_Missense_Mutation_p.D271N	NM_054107	NP_473448	Q8NGS2	OR1J2_HUMAN	olfactory receptor, family 1, subfamily J,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|pancreas(1)|breast(1)	5						TATTGACAAGGATGTCATTGT	0.473000													62	126					0	0	0	0
TTC16	158248	broad.mit.edu	37	9	130482360	130482360	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:130482360C>T	uc004brq.1	+	5	497	c.430C>T	c.(430-432)CAA>TAA	p.Q144*	PTRH1_uc011mah.1_Intron|TTC16_uc011mai.1_Nonsense_Mutation_p.Q131*|TTC16_uc004brr.1_Nonsense_Mutation_p.Q89*|TTC16_uc010mxn.1_5'Flank	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	144	TPR 3.						binding				0						TCCCCAGGGACAATGCCTTTT	0.577000													45	51					0	0	0	0
SEC16A	9919	broad.mit.edu	37	9	139366454	139366454	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:139366454C>T	uc004chx.2	-	4	3986	c.3677G>A	c.(3676-3678)AGC>AAC	p.S1226N	SEC16A_uc004chv.3_Missense_Mutation_p.S616N|SEC16A_uc004chw.2_Missense_Mutation_p.S1226N|SEC16A_uc010nbn.2_Missense_Mutation_p.S1226N	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	1048	Required for endoplasmic reticulum localization.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CGAGGAGTGGCTGGCTCGGGA	0.637000													33	37					0	0	0	0
ENTPD8	377841	broad.mit.edu	37	9	140330690	140330690	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:140330690G>A	uc004cmw.2	-	7	1009	c.825C>T	c.(823-825)CTC>CTT	p.L275L	C9orf167_uc011mew.1_Intron|ENTPD8_uc004cmx.2_Silent_p.L275L	NM_001033113	NP_001028285	Q5MY95	ENTP8_HUMAN	ectonucleoside triphosphate diphosphohydrolase 8	275	Extracellular (Potential).					integral to membrane|plasma membrane	ATP binding			skin(1)	1	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000224)|Epithelial(140;0.000898)		GGTAGCCGCTGAGGTAGCACG	0.706000													12	32					0	0	0	0
NR0B1	190	broad.mit.edu	37	X	30327172	30327172	+	Silent	SNP	C	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chrX:30327172C>A	uc004dcf.3	-	1	324	c.309G>T	c.(307-309)CCG>CCT	p.P103P		NM_000475	NP_000466	P51843	NR0B1_HUMAN	nuclear receptor subfamily 0, group B, member 1	103	4 X 67 AA tandem repeats.|2.				adrenal gland development|hypothalamus development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of steroid hormone receptor signaling pathway|pituitary gland development|protein localization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid biosynthetic process	cytoplasm|membrane fraction|nucleoplasm|nucleus|polysomal ribosome	AF-2 domain binding|DNA hairpin binding|ligand-regulated transcription factor activity|protein domain specific binding|protein homodimerization activity|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|steroid hormone receptor binding|transcription corepressor activity|transcription factor binding			ovary(1)|lung(1)	2					Dexamethasone(DB01234)|Tretinoin(DB00755)	AGCCCCAGCACGGACCCAGCG	0.677000											OREG0019719	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	15					2.37509e-13	2.76079e-13	1	0
DCAF12L1	139170	broad.mit.edu	37	X	125686264	125686264	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chrX:125686264G>T	uc004eul.2	-	1	579	c.328C>A	c.(328-330)CAG>AAG	p.Q110K		NM_178470	NP_848565	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	110										skin(3)|ovary(1)	4						CACACCACCTGCCTGGAGTTC	0.637000													36	17					4.65686e-17	5.65476e-17	1	0
SMARCA1	6594	broad.mit.edu	37	X	128599869	128599869	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chrX:128599869T>G	uc004eun.3	-	22	2882	c.2769A>C	c.(2767-2769)GAA>GAC	p.E923D	SMARCA1_uc004eup.3_Missense_Mutation_p.E911D|SMARCA1_uc011muk.1_Missense_Mutation_p.E923D|SMARCA1_uc011mul.1_Missense_Mutation_p.E911D	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	923					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						GAATTCTTGCTTCTCCACGTT	0.333000													29	21					0	0	0	0
GPC4	2239	broad.mit.edu	37	X	132438794	132438794	+	Silent	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chrX:132438794G>A	uc004exc.1	-	7	1463	c.1251C>T	c.(1249-1251)AAC>AAT	p.N417N	GPC4_uc011mvg.1_Silent_p.N347N	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	417					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					CCTCATTGCCGTTTCCTGCAG	0.468000													74	35					0	0	0	0
GABRA3	2556	broad.mit.edu	37	X	151336735	151336735	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chrX:151336735C>T	uc010ntk.1	-	10	1684	c.1444G>A	c.(1444-1446)GAG>AAG	p.E482K		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	482					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ATAGCTGACTCCCGGTTGACA	0.498000													35	13					0	0	0	0
ATP2B3	492	broad.mit.edu	37	X	152825277	152825277	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chrX:152825277G>A	uc004fht.1	+	16	2842	c.2716G>A	c.(2716-2718)GAG>AAG	p.E906K	ATP2B3_uc004fhs.1_Missense_Mutation_p.E906K|ATP2B3_uc010nuf.1_5'Flank|ATP2B3_uc004fhu.1_5'Flank	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	906	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCCACCCACAGAGTCGCTGCT	0.597000													35	11					0	0	0	0
Unknown	0	broad.mit.edu	37	1	149261363	149261363	+	IGR	DEL	G	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:149261363delG								LOC645166 (308309 upstream) : LOC388692 (18113 downstream)																							tgttcagagtggcagaggaga	0.169													---	---	---							
Unknown	0	broad.mit.edu	37	1	171639810	171639811	+	IGR	DEL	TA	-	-	rs115341538	by1000genomes	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:171639810_171639811delTA								MYOC (17987 upstream) : VAMP4 (29487 downstream)																							GTACTCTTGGTATACGAAGATC	0.515													---	---	---							
Unknown	0	broad.mit.edu	37	1	207273399	207273414	+	IGR	DEL	ATGTGTGTGTGTGTGT	-	-	rs57088528		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr1:207273399_207273414delATGTGTGTGTGTGTGT								C4BPB (64 upstream) : C4BPA (4097 downstream)																							ATAATGCACCAtgtgtgtgtgtgtgtgtgtgtgtgt	0.255													---	---	---							
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:42400455delT								None (None upstream) : LOC441666 (426860 downstream)																							cttctttgtgttgtgtgtatt	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	10	45568537	45568537	+	5'Flank	DEL	T	-	-	rs35080476		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr10:45568537delT	uc001jbx.1	-											Homo sapiens zinc finger protein 22 (KOX 15), mRNA (cDNA clone IMAGE:4826621).																		ATCCAGCTAATTTTTTTTTTT	0.214													---	---	---							
Unknown	0	broad.mit.edu	37	12	77054687	77054687	+	IGR	DEL	T	-	-	rs2369296	by1000genomes	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr12:77054687delT								OSBPL8 (101098 upstream) : ZDHHC17 (103167 downstream)																							aaaaaaaaaataaataaaGGA	0.358													---	---	---							
Unknown	0	broad.mit.edu	37	13	54615316	54615316	+	IGR	DEL	A	-	-	rs149312827		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr13:54615316delA								OLFM4 (989130 upstream) : MIR1297 (270791 downstream)																							attgcattacaacatgtacaa	0.080													---	---	---							
Unknown	0	broad.mit.edu	37	14	20085255	20085255	+	IGR	DEL	G	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:20085255delG								P704P (64983 upstream) : OR4Q3 (130332 downstream)																							AAACTAGGCTGTGACAACAAG	0.294													---	---	---							
Unknown	0	broad.mit.edu	37	14	20086381	20086382	+	IGR	INS	-	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr14:20086381_20086382insT								P704P (66109 upstream) : OR4Q3 (129205 downstream)																							GTCTTACAAGGTAAAAAAAATG	0.312													---	---	---							
NIPA2	81614	broad.mit.edu	37	15	23006728	23006729	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:23006728_23006729insG	uc001yux.2	-	8	1188_1189	c.575_576insC	c.(574-576)TCAfs	p.S192fs	NIPA2_uc001yuy.2_Frame_Shift_Ins_p.S192fs|NIPA2_uc001yuz.2_Frame_Shift_Ins_p.S192fs|NIPA2_uc001yva.2_Frame_Shift_Ins_p.S173fs|NIPA2_uc001yvb.2_Frame_Shift_Ins_p.S192fs|NIPA2_uc010ayb.2_Frame_Shift_Ins_p.S173fs	NM_030922	NP_112184	Q8N8Q9	NIPA2_HUMAN	non imprinted in Prader-Willi/Angelman syndrome	192	Helical; (Potential).					early endosome|integral to membrane|plasma membrane				haematopoietic_and_lymphoid_tissue(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;1.48e-06)|Epithelial(43;1.44e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000353)		CACAGGAGACTGAAAACGCGCC	0.520													---	---	---							
Unknown	0	broad.mit.edu	37	15	35376193	35376194	+	IGR	INS	-	A	A			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr15:35376193_35376194insA								ZNF770 (95739 upstream) : LOC723972 (153333 downstream)																							GATCCAATAGGAAAAAAAAAAA	0.267													---	---	---							
TP53	7157	broad.mit.edu	37	17	7579356	7579359	+	Frame_Shift_Del	DEL	GACG	-	-	rs11540654		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:7579356_7579359delGACG	uc002gim.2	-	4	522_525	c.328_331delCGTC	c.(328-333)CGTCTGfs	p.R110fs	TP53_uc002gig.1_Frame_Shift_Del_p.R110fs|TP53_uc002gih.2_Frame_Shift_Del_p.R110fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Frame_Shift_Del_p.R110fs|TP53_uc010cni.1_Frame_Shift_Del_p.R110fs|TP53_uc002gij.2_Frame_Shift_Del_p.R110fs|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Frame_Shift_Del_p.R71fs|TP53_uc010cnk.1_Frame_Shift_Del_p.R125fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	110_111	|Interaction with HIPK1 (By similarity).		L -> Q (in sporadic cancers; somatic mutation).|L -> P (in sporadic cancers; somatic mutation).|L -> M (in a sporadic cancer; somatic mutation).|L -> R (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R110L(24)|p.R110P(8)|p.0?(7)|p.R110fs*13(5)|p.R110C(4)|p.G59fs*23(3)|p.R110H(2)|p.F109_R110delFR(2)|p.Y107fs*38(1)|p.R110fs*18(1)|p.R110fs*39(1)|p.L111fs*10(1)|p.V73fs*9(1)|p.Y107fs*44(1)|p.L111M(1)|p.S33fs*23(1)|p.R110S(1)|p.Y103_G112>C(1)|p.P13fs*18(1)|p.Y103_L111>L(1)|p.F109_R110insXX(1)|p.G105_T125del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AAGAAGCCCAGACGGAAACCGTAG	0.613		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			---	---	---							
LIMD2	80774	broad.mit.edu	37	17	61776623	61776623	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr17:61776623delG	uc002jbj.3	-	2	214	c.36delC	c.(34-36)CCCfs	p.P12fs	LIMD2_uc002jbk.3_5'UTR|LIMD2_uc002jbl.3_Frame_Shift_Del_p.P12fs	NM_030576	NP_085053	Q9BT23	LIMD2_HUMAN	LIM domain containing 2	12							zinc ion binding				0						TTACATGAGAGGGGGTGGCCT	0.682													---	---	---							
Unknown	0	broad.mit.edu	37	19	16092412	16092412	+	IGR	DEL	A	-	-	rs111578902		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:16092412delA								OR10H4 (31645 upstream) : LOC126536 (34032 downstream)																							AGAAAACCAGAAAAAAAAAAT	0.303													---	---	---							
Unknown	0	broad.mit.edu	37	19	27738491	27738491	+	IGR	DEL	T	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:27738491delT								None (None upstream) : LOC148189 (542911 downstream)																							tggaaacgggtttttttcatg	0.000													---	---	---							
LENG9	94059	broad.mit.edu	37	19	54973750	54973750	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr19:54973750delT	uc010yez.1	-	1	1145	c.1026delA	c.(1024-1026)GAAfs	p.E342fs		NM_198988	NP_945339	Q96B70	LENG9_HUMAN	leukocyte receptor cluster (LRC) member 9	342					RNA metabolic process	intracellular	catalytic activity|nucleic acid binding|zinc ion binding				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.134)		GGACCAGGTATTCCTGGGCCT	0.632													---	---	---							
Unknown	0	broad.mit.edu	37	2	111391560	111391561	+	IGR	DEL	AA	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr2:111391560_111391561delAA								LOC151009 (249447 upstream) : BUB1 (3850 downstream)																							GAAGGTGGGCAAAAAAAAAAGC	0.396													---	---	---							
SYCP2	10388	broad.mit.edu	37	20	58444989	58444990	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr20:58444989_58444990insT	uc002yaz.2	-	35	3743_3744	c.3604_3605insA	c.(3604-3606)ATAfs	p.I1202fs		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	1202					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			CAGAGAACTTATTTTTTTTCTA	0.312													---	---	---							
TOP2B	7155	broad.mit.edu	37	3	25665146	25665146	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr3:25665146delT	uc011awn.1	-	21	2630	c.2587delA	c.(2587-2589)ATTfs	p.I863fs	TOP2B_uc003cdj.2_Frame_Shift_Del_p.I858fs	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	863					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						ATTATAGGAATATACCACTCA	0.398													---	---	---							
Unknown	0	broad.mit.edu	37	6	160133471	160133488	+	IGR	DEL	CTCACACTGCTCAGACCT	-	-	rs71296993		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr6:160133471_160133488delCTCACACTGCTCAGACCT								SOD2 (19118 upstream) : WTAP (14641 downstream)																							ataaccaccactcacactgctcagacctccataaccac	0.078													---	---	---							
Unknown	0	broad.mit.edu	37	7	130525844	130525845	+	IGR	INS	-	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr7:130525844_130525845insT								KLF14 (106984 upstream) : MIR29A (35661 downstream)																							CAGttctttgcttttttttttt	0.168													---	---	---							
Unknown	0	broad.mit.edu	37	8	35764089	35764089	+	IGR	DEL	C	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr8:35764089delC								UNC5D (111909 upstream) : KCNU1 (877753 downstream)																							gctcctgccgcccccactcct	0.000													---	---	---							
DENND1A	57706	broad.mit.edu	37	9	126144077	126144077	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-10A-01D-2013-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	d28213c6-eb6f-4348-aca4-6f384a3b6d71	g.chr9:126144077delG	uc004bnz.1	-	22	2897	c.2664delC	c.(2662-2664)TCCfs	p.S888fs	DENND1A_uc011lzl.1_Frame_Shift_Del_p.S706fs|DENND1A_uc004bny.1_Frame_Shift_Del_p.S670fs|DENND1A_uc011lzm.1_Frame_Shift_Del_p.S899fs|DENND1A_uc010mwh.1_Frame_Shift_Del_p.S309fs	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	888	Pro-rich.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						TGGAGAGGGCGGAGAGGTTGG	0.682													---	---	---							
Unknown	0	broad.mit.edu	37	1	149261363	149261363	+	IGR	DEL	G	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:149261363delG								LOC645166 (308309 upstream) : LOC388692 (18113 downstream)																							tgttcagagtggcagaggaga	0.169													---	---	---							
Unknown	0	broad.mit.edu	37	1	171639810	171639811	+	IGR	DEL	TA	-	-	rs115341538	by1000genomes	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr1:171639810_171639811delTA								MYOC (17987 upstream) : VAMP4 (29487 downstream)																							GTACTCTTGGTATACGAAGATC	0.515													---	---	---							
Unknown	0	broad.mit.edu	37	10	42385340	42385362	+	IGR	DEL	GAATTATCTAATGCAATCGAATA	-	-	rs66510027		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:42385340_42385362delGAATTATCTAATGCAATCGAATA								None (None upstream) : LOC441666 (441953 downstream)																							gaatcgaagggaattatctaatgcaatcgaatagaattatcga	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	10	42400455	42400455	+	IGR	DEL	T	-	-	rs71264011		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:42400455delT								None (None upstream) : LOC441666 (426860 downstream)																							cttctttgtgttgtgtgtatt	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	10	135454782	135454784	+	IGR	DEL	AAG	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr10:135454782_135454784delAAG								FRG2B (14483 upstream) : LOC653544 (35495 downstream)																							AAGTGTAGACAAGAGGGTCATCT	0.438													---	---	---							
Unknown	0	broad.mit.edu	37	12	3181349	3181350	+	IGR	INS	-	TT	TT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:3181349_3181350insTT								TEAD4 (31508 upstream) : TSPAN9 (5207 downstream)																							TTtttttttccttttttttttt	0.317													---	---	---							
PIP4K2C	79837	broad.mit.edu	37	12	57984921	57984922	+	5'Flank	INS	-	C	C	rs145477125	by1000genomes	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr12:57984921_57984922insC	uc001sou.2	+						PIP4K2C_uc001sot.2_5'Flank|PIP4K2C_uc010srs.1_5'Flank|PIP4K2C_uc010srt.1_5'Flank	NM_001146258	NP_001139730	Q8TBX8	PI42C_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type							cytoplasm|membrane	1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|identical protein binding			central_nervous_system(2)|lung(1)	3	Melanoma(17;0.122)					cggggccagcgtcgccccgccc	0.574													---	---	---							
TSC22D1	8848	broad.mit.edu	37	13	45148691	45148693	+	In_Frame_Del	DEL	TGT	-	-	rs148625973		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr13:45148691_45148693delTGT	uc001uzn.3	-	1	2009_2011	c.1518_1520delACA	c.(1516-1521)CAACAG>CAG	p.506_507QQ>Q	TSC22D1_uc001uzo.1_In_Frame_Del_p.506_507QQ>Q	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	506_507	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		TGgttgttgctgttgttgttgtt	0.404													---	---	---							
NIPA2	81614	broad.mit.edu	37	15	23006728	23006729	+	Frame_Shift_Ins	INS	-	G	G			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:23006728_23006729insG	uc001yux.2	-	8	1188_1189	c.575_576insC	c.(574-576)TCAfs	p.S192fs	NIPA2_uc001yuy.2_Frame_Shift_Ins_p.S192fs|NIPA2_uc001yuz.2_Frame_Shift_Ins_p.S192fs|NIPA2_uc001yva.2_Frame_Shift_Ins_p.S173fs|NIPA2_uc001yvb.2_Frame_Shift_Ins_p.S192fs|NIPA2_uc010ayb.2_Frame_Shift_Ins_p.S173fs	NM_030922	NP_112184	Q8N8Q9	NIPA2_HUMAN	non imprinted in Prader-Willi/Angelman syndrome	192	Helical; (Potential).					early endosome|integral to membrane|plasma membrane				haematopoietic_and_lymphoid_tissue(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;1.48e-06)|Epithelial(43;1.44e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000353)		CACAGGAGACTGAAAACGCGCC	0.520													---	---	---							
MFGE8	4240	broad.mit.edu	37	15	89453067	89453074	+	Frame_Shift_Del	DEL	GTGTACGA	-	-	rs141997845		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr15:89453067_89453074delGTGTACGA	uc002bng.3	-	2	267_274	c.154_161delTCGTACAC	c.(154-162)TCGTACACCfs	p.S52fs	MFGE8_uc002bnf.3_5'UTR|MFGE8_uc002bnh.3_Frame_Shift_Del_p.S52fs|MFGE8_uc010bnn.2_Frame_Shift_Del_p.S44fs|MFGE8_uc010upq.1_Intron|MFGE8_uc010upr.1_Frame_Shift_Del_p.S52fs|MFGE8_uc010bno.2_Intron	NM_005928	NP_005919	Q08431	MFGM_HUMAN	milk fat globule-EGF factor 8 protein isoform a	52_54	EGF-like.				angiogenesis|cell adhesion|interspecies interaction between organisms|single fertilization					ovary(1)	1	Lung NSC(78;0.0392)|all_lung(78;0.077)					GCACGTGCAGGTGTACGAGGGGAAGACA	0.543													---	---	---							
TP53	7157	broad.mit.edu	37	17	7579356	7579359	+	Frame_Shift_Del	DEL	GACG	-	-	rs11540654		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:7579356_7579359delGACG	uc002gim.2	-	4	522_525	c.328_331delCGTC	c.(328-333)CGTCTGfs	p.R110fs	TP53_uc002gig.1_Frame_Shift_Del_p.R110fs|TP53_uc002gih.2_Frame_Shift_Del_p.R110fs|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Frame_Shift_Del_p.R110fs|TP53_uc010cni.1_Frame_Shift_Del_p.R110fs|TP53_uc002gij.2_Frame_Shift_Del_p.R110fs|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Intron|TP53_uc002gio.2_Intron|TP53_uc010vug.1_Frame_Shift_Del_p.R71fs|TP53_uc010cnk.1_Frame_Shift_Del_p.R125fs	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	110_111	|Interaction with HIPK1 (By similarity).		L -> Q (in sporadic cancers; somatic mutation).|L -> P (in sporadic cancers; somatic mutation).|L -> M (in a sporadic cancer; somatic mutation).|L -> R (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R110L(24)|p.R110P(8)|p.0?(7)|p.R110fs*13(5)|p.R110C(4)|p.G59fs*23(3)|p.R110H(2)|p.F109_R110delFR(2)|p.Y107fs*38(1)|p.R110fs*18(1)|p.R110fs*39(1)|p.L111fs*10(1)|p.V73fs*9(1)|p.Y107fs*44(1)|p.L111M(1)|p.S33fs*23(1)|p.R110S(1)|p.Y103_G112>C(1)|p.P13fs*18(1)|p.Y103_L111>L(1)|p.F109_R110insXX(1)|p.G105_T125del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AAGAAGCCCAGACGGAAACCGTAG	0.613		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			---	---	---							
LIMD2	80774	broad.mit.edu	37	17	61776623	61776623	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr17:61776623delG	uc002jbj.3	-	2	214	c.36delC	c.(34-36)CCCfs	p.P12fs	LIMD2_uc002jbk.3_5'UTR|LIMD2_uc002jbl.3_Frame_Shift_Del_p.P12fs	NM_030576	NP_085053	Q9BT23	LIMD2_HUMAN	LIM domain containing 2	12							zinc ion binding				0						TTACATGAGAGGGGGTGGCCT	0.682													---	---	---							
LENG9	94059	broad.mit.edu	37	19	54973750	54973750	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr19:54973750delT	uc010yez.1	-	1	1145	c.1026delA	c.(1024-1026)GAAfs	p.E342fs		NM_198988	NP_945339	Q96B70	LENG9_HUMAN	leukocyte receptor cluster (LRC) member 9	342					RNA metabolic process	intracellular	catalytic activity|nucleic acid binding|zinc ion binding				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.134)		GGACCAGGTATTCCTGGGCCT	0.632													---	---	---							
Unknown	0	broad.mit.edu	37	2	111391560	111391561	+	IGR	DEL	AA	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr2:111391560_111391561delAA								LOC151009 (249447 upstream) : BUB1 (3850 downstream)																							GAAGGTGGGCAAAAAAAAAAGC	0.396													---	---	---							
SYCP2	10388	broad.mit.edu	37	20	58444989	58444990	+	Frame_Shift_Ins	INS	-	T	T			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr20:58444989_58444990insT	uc002yaz.2	-	35	3743_3744	c.3604_3605insA	c.(3604-3606)ATAfs	p.I1202fs		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	1202					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			CAGAGAACTTATTTTTTTTCTA	0.312													---	---	---							
Unknown	0	broad.mit.edu	37	3	5124712	5124713	+	IGR	INS	-	TT	TT			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:5124712_5124713insTT								BHLHE40 (97849 upstream) : ARL8B (39217 downstream)																							GCCttttttttttttttttttt	0.455													---	---	---							
TOP2B	7155	broad.mit.edu	37	3	25665146	25665146	+	Frame_Shift_Del	DEL	T	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:25665146delT	uc011awn.1	-	21	2630	c.2587delA	c.(2587-2589)ATTfs	p.I863fs	TOP2B_uc003cdj.2_Frame_Shift_Del_p.I858fs	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	863					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						ATTATAGGAATATACCACTCA	0.398													---	---	---							
Unknown	0	broad.mit.edu	37	3	99045093	99045094	+	IGR	INS	-	A	A	rs138319375	by1000genomes	TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr3:99045093_99045094insA								DCBLD2 (424560 upstream) : COL8A1 (312360 downstream)																							gaatttgagggaaaaaaaaAAC	0.213													---	---	---							
Unknown	0	broad.mit.edu	37	6	160133471	160133488	+	IGR	DEL	CTCACACTGCTCAGACCT	-	-	rs71296993		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr6:160133471_160133488delCTCACACTGCTCAGACCT								SOD2 (19118 upstream) : WTAP (14641 downstream)																							ataaccaccactcacactgctcagacctccataaccac	0.078													---	---	---							
Unknown	0	broad.mit.edu	37	8	35764089	35764089	+	IGR	DEL	C	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr8:35764089delC								UNC5D (111909 upstream) : KCNU1 (877753 downstream)																							gctcctgccgcccccactcct	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	9	67331359	67331359	+	IGR	DEL	T	-	-			TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:67331359delT								AQP7P1 (41867 upstream) : FAM27B (461571 downstream)																							CATGATGGGGTTGGGGGGGAA	0.393													---	---	---							
Unknown	0	broad.mit.edu	37	9	127957481	127957481	+	IGR	DEL	A	-	-	rs79479616		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chr9:127957481delA								PPP6C (5263 upstream) : RABEPK (5336 downstream)																							cgtctcaaataaaaaaaaaaa	0.229													---	---	---							
MIR450B	100126302	broad.mit.edu	37	X	133675600	133675615	+	5'Flank	DEL	ACACACACACACACAA	-	-	rs67064887		TCGA-CV-6956-01A-21D-2012-08	TCGA-CV-6956-11A-01D-2012-08									Somatic	Phase_I	Capture				Illumina GAIIx	9ccee056-124e-40d5-a07d-c208765d8640	e0a52d9d-41f2-46d3-8c62-df1241806397	g.chrX:133675600_133675615delACACACACACACACAA	hsa-mir-450b|MI0005531	-						MIR450A1_hsa-mir-450a-1|MI0001652_5'Flank|uc011mvl.1_5'Flank|MIR450A2_hsa-mir-450a-2|MI0003187_5'Flank|MIR542_hsa-mir-542|MI0003686_5'Flank																	0						acacacacacacacacacacacacaAAACCATGAAA	0.301													---	---	---							
